Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021666.t1 | XP_004489170.1 | 95 | 180 | 9 | 0 | 1 | 180 | 1 | 180 | 5.20E-89 | 337 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021666.t1 | Q8H1F4 | 76.4 | 174 | 41 | 0 | 6 | 179 | 7 | 180 | 1.6e-70 | 266.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021666.t1 | A0A1S2XGU1 | 95.0 | 180 | 9 | 0 | 1 | 180 | 1 | 180 | 3.8e-89 | 337.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene043279 | MS.gene021666 | PPI |
| MS.gene021666 | MS.gene003223 | PPI |
| MS.gene021666 | MS.gene056700 | PPI |
| MS.gene021666 | MS.gene45686 | PPI |
| MS.gene021666 | MS.gene68223 | PPI |
| MS.gene021666 | MS.gene02789 | PPI |
| MS.gene07800 | MS.gene021666 | PPI |
| MS.gene79635 | MS.gene021666 | PPI |
| MS.gene74608 | MS.gene021666 | PPI |
| MS.gene063166 | MS.gene021666 | PPI |
| MS.gene011220 | MS.gene021666 | PPI |
| MS.gene021666 | MS.gene37394 | PPI |
| MS.gene003764 | MS.gene021666 | PPI |
| MS.gene74768 | MS.gene021666 | PPI |
| MS.gene064893 | MS.gene021666 | PPI |
| MS.gene30333 | MS.gene021666 | PPI |
| MS.gene02023 | MS.gene021666 | PPI |
| MS.gene014282 | MS.gene021666 | PPI |
| MS.gene021666 | MS.gene50077 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021666.t1 | MTR_8g017630 | 86.034 | 179 | 25 | 0 | 1 | 179 | 1 | 179 | 1.69e-114 | 323 |
| MS.gene021666.t1 | MTR_0350s0010 | 83.721 | 172 | 27 | 1 | 9 | 179 | 48 | 219 | 1.39e-104 | 299 |
| MS.gene021666.t1 | MTR_2g028750 | 73.410 | 173 | 46 | 0 | 8 | 180 | 33 | 205 | 8.05e-93 | 269 |
| MS.gene021666.t1 | MTR_7g009640 | 94.074 | 135 | 8 | 0 | 9 | 143 | 1 | 135 | 2.44e-88 | 255 |
| MS.gene021666.t1 | MTR_8g018030 | 83.051 | 59 | 10 | 0 | 7 | 65 | 8 | 66 | 5.52e-31 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021666.t1 | AT4G08520 | 76.437 | 174 | 41 | 0 | 6 | 179 | 7 | 180 | 6.42e-99 | 283 |
| MS.gene021666.t1 | AT3G09800 | 74.138 | 174 | 45 | 0 | 6 | 179 | 5 | 178 | 9.27e-96 | 275 |
| MS.gene021666.t1 | AT3G09800 | 74.138 | 174 | 45 | 0 | 6 | 179 | 5 | 178 | 9.27e-96 | 275 |
| MS.gene021666.t1 | AT3G09800 | 74.138 | 174 | 45 | 0 | 6 | 179 | 5 | 178 | 9.27e-96 | 275 |
| MS.gene021666.t1 | AT3G09800 | 74.138 | 174 | 45 | 0 | 6 | 179 | 85 | 258 | 2.48e-94 | 275 |
| MS.gene021666.t1 | AT1G60970 | 71.098 | 173 | 50 | 0 | 8 | 180 | 5 | 177 | 8.90e-91 | 263 |
| MS.gene021666.t1 | AT3G09800 | 71.311 | 122 | 35 | 0 | 58 | 179 | 18 | 139 | 1.79e-58 | 179 |
| MS.gene021666.t1 | AT3G09800 | 71.311 | 122 | 35 | 0 | 58 | 179 | 18 | 139 | 1.79e-58 | 179 |
Find 22 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGGCGGAGTCAGCATCTA+TGG | 0.348358 | 7.4:+89643049 | None:intergenic |
| TGCCTTGACGAGATAGTTGA+TGG | 0.404780 | 7.4:-89643208 | MS.gene021666:CDS |
| AAGAGAGGCACTTGAGAACT+TGG | 0.422153 | 7.4:-89643245 | MS.gene021666:CDS |
| TGCAGACGCTAACGCAAGCA+TGG | 0.507776 | 7.4:-89642442 | MS.gene021666:intron |
| GACCTGCATTTCTTTGTCAC+TGG | 0.516261 | 7.4:-89643456 | MS.gene021666:CDS |
| ATGCAATCACCCTTCTGTTG+AGG | 0.540407 | 7.4:-89643380 | MS.gene021666:intron |
| TGCCAGTGACAAAGAAATGC+AGG | 0.541473 | 7.4:+89643454 | None:intergenic |
| AGCATTTGTCTTGATAGTCT+TGG | 0.547180 | 7.4:+89644749 | None:intergenic |
| AGCCAAAATACCTCAACAGA+AGG | 0.555442 | 7.4:+89643370 | None:intergenic |
| TGACTCCGCCTTGTCTGAGC+AGG | 0.559584 | 7.4:-89643039 | MS.gene021666:intron |
| TTCCCTCTGAGTCTAAAAGA+AGG | 0.560577 | 7.4:+89644850 | None:intergenic |
| AAGACAAATGCTCGCACAGA+AGG | 0.568388 | 7.4:-89644738 | MS.gene021666:intron |
| GCAGACGCTAACGCAAGCAT+GGG | 0.582122 | 7.4:-89642441 | MS.gene021666:intron |
| GCCAAAATACCTCAACAGAA+GGG | 0.598170 | 7.4:+89643371 | None:intergenic |
| CTCCATCAACTATCTCGTCA+AGG | 0.603291 | 7.4:+89643206 | None:intergenic |
| GTCAGCATCTATGGTGTGAG+AGG | 0.619927 | 7.4:+89643058 | None:intergenic |
| TAGCACTACCTGCTCAGACA+AGG | 0.635959 | 7.4:+89643031 | None:intergenic |
| TTGACGAGATAGTTGATGGA+GGG | 0.641968 | 7.4:-89643204 | MS.gene021666:intron |
| CTTGACGAGATAGTTGATGG+AGG | 0.654429 | 7.4:-89643205 | MS.gene021666:CDS |
| GAATAATGTTGACAAAAGAG+AGG | 0.658404 | 7.4:-89643260 | MS.gene021666:CDS |
| CACTACCTGCTCAGACAAGG+CGG | 0.687504 | 7.4:+89643034 | None:intergenic |
| AGGATGATACTCGAAACAAG+TGG | 0.724853 | 7.4:-89643104 | MS.gene021666:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAACTTGATAAATATAA+TGG | - | chr7.4:89644038-89644057 | MS.gene021666:intron | 10.0% |
| !! | ACTAAGATAATAAATATTTA+TGG | + | chr7.4:89645701-89645720 | None:intergenic | 10.0% |
| !! | CAAAAATTACTTTATAAAAT+AGG | + | chr7.4:89644955-89644974 | None:intergenic | 10.0% |
| !!! | AATATTTTTTAAAAAACGAA+TGG | + | chr7.4:89645112-89645131 | None:intergenic | 10.0% |
| !!! | GTTTTTAATTATCATTATTT+TGG | + | chr7.4:89644093-89644112 | None:intergenic | 10.0% |
| !! | AGTATATCATAAAACTTTAT+TGG | - | chr7.4:89642750-89642769 | MS.gene021666:intron | 15.0% |
| !! | ATATTCCAAACTAAAAAATT+TGG | + | chr7.4:89644601-89644620 | None:intergenic | 15.0% |
| !!! | GTAATTTTTGTATCATTTAT+AGG | - | chr7.4:89644965-89644984 | MS.gene021666:intron | 15.0% |
| !! | AAAAGATTCCTAATACTTAT+AGG | + | chr7.4:89642528-89642547 | None:intergenic | 20.0% |
| !! | AATATGATATCAAAGTCTAT+AGG | - | chr7.4:89643832-89643851 | MS.gene021666:intron | 20.0% |
| !! | AGCTATTAATATTTGTGTTA+AGG | - | chr7.4:89643306-89643325 | MS.gene021666:intron | 20.0% |
| !! | ATAGACTTTGATATCATATT+AGG | + | chr7.4:89643832-89643851 | None:intergenic | 20.0% |
| !! | ATAGGAATGATGAATAAAAT+AGG | + | chr7.4:89644937-89644956 | None:intergenic | 20.0% |
| !! | ATATGTGTTAAAATCTGTAA+TGG | + | chr7.4:89643538-89643557 | None:intergenic | 20.0% |
| !! | TAAACAAAACAAAAAAGCAA+TGG | + | chr7.4:89643248-89643267 | None:intergenic | 20.0% |
| !! | TAATTTCATAAACTCGTATT+GGG | + | chr7.4:89644574-89644593 | None:intergenic | 20.0% |
| !! | TTAATGTCTATATGATACAA+TGG | + | chr7.4:89644671-89644690 | None:intergenic | 20.0% |
| !! | TTAATTTCATAAACTCGTAT+TGG | + | chr7.4:89644575-89644594 | None:intergenic | 20.0% |
| !!! | AGAAGGATATTTTTTATCAT+AGG | + | chr7.4:89643383-89643402 | None:intergenic | 20.0% |
| !!! | TATTTGTGTTAAGGTATTAT+TGG | - | chr7.4:89643315-89643334 | MS.gene021666:intron | 20.0% |
| !!! | TTATTCTCTTTTACATTAGT+TGG | - | chr7.4:89642571-89642590 | MS.gene021666:intron | 20.0% |
| ! | AAAAAAAACATGTCAGTGTT+GGG | + | chr7.4:89645402-89645421 | None:intergenic | 25.0% |
| ! | AAAACAAATCTATCAACCTT+AGG | - | chr7.4:89644354-89644373 | MS.gene021666:intron | 25.0% |
| ! | AACTGTCAGATTATAATTTG+AGG | - | chr7.4:89644524-89644543 | MS.gene021666:intron | 25.0% |
| ! | AATATCAAAATTTCACTGTC+AGG | + | chr7.4:89645786-89645805 | None:intergenic | 25.0% |
| ! | ACATGATTATTGATGTTTAC+TGG | - | chr7.4:89643599-89643618 | MS.gene021666:intron | 25.0% |
| ! | ATTAGTTAATGTGTACCAAT+GGG | + | chr7.4:89644257-89644276 | None:intergenic | 25.0% |
| ! | GATCACAAAAAATAAAACCT+TGG | - | chr7.4:89644162-89644181 | MS.gene021666:intron | 25.0% |
| ! | TAAAAAAAACATGTCAGTGT+TGG | + | chr7.4:89645403-89645422 | None:intergenic | 25.0% |
| ! | TAATCATGTAAACTAGCATA+TGG | + | chr7.4:89643588-89643607 | None:intergenic | 25.0% |
| ! | TATCTTGAATCAATATGTCA+TGG | - | chr7.4:89644909-89644928 | MS.gene021666:intron | 25.0% |
| ! | TATTAGTTAATGTGTACCAA+TGG | + | chr7.4:89644258-89644277 | None:intergenic | 25.0% |
| ! | TATTCTCTCTCAAAATCTAA+TGG | - | chr7.4:89645561-89645580 | MS.gene021666:intron | 25.0% |
| ! | TCAACCAAAATATACATACT+TGG | + | chr7.4:89644233-89644252 | None:intergenic | 25.0% |
| ! | TCACAATTTATATTTCTCGA+AGG | - | chr7.4:89642780-89642799 | MS.gene021666:intron | 25.0% |
| ! | TGTACTAGTAGTTATTACAT+AGG | - | chr7.4:89644462-89644481 | MS.gene021666:intron | 25.0% |
| ! | TTATTATGACATTCACTATG+TGG | - | chr7.4:89644629-89644648 | MS.gene021666:intron | 25.0% |
| ! | TTATTTACATTGATCCATCA+AGG | - | chr7.4:89642490-89642509 | MS.gene021666:intron | 25.0% |
| ! | TTCTTGAAGGTTTAAATATG+AGG | - | chr7.4:89643185-89643204 | MS.gene021666:intron | 25.0% |
| ! | TTGATTTAGAGAAACACTAA+TGG | - | chr7.4:89642860-89642879 | MS.gene021666:intron | 25.0% |
| !! | TCAAGTTATGTGCATTTTTA+TGG | - | chr7.4:89642440-89642459 | MS.gene021666:CDS | 25.0% |
| !! | TCACTGTGTAATATATTTTC+AGG | + | chr7.4:89643960-89643979 | None:intergenic | 25.0% |
| !!! | AACACTGACATGTTTTTTTT+AGG | - | chr7.4:89645402-89645421 | MS.gene021666:intron | 25.0% |
| !!! | AACTGCCAAATTTTTTAGTT+TGG | - | chr7.4:89644593-89644612 | MS.gene021666:intron | 25.0% |
| !!! | ATGTTTTTTTAGTTTCACGA+TGG | + | chr7.4:89643214-89643233 | None:intergenic | 25.0% |
| !!! | TCATTATTACAGAGTTTTGA+CGG | - | chr7.4:89645720-89645739 | MS.gene021666:intron | 25.0% |
| !!! | TTGAATGTGTTCATTTTTCA+TGG | - | chr7.4:89644188-89644207 | MS.gene021666:intron | 25.0% |
| AAAAATATTCCCTCACTTGA+AGG | - | chr7.4:89645123-89645142 | MS.gene021666:intron | 30.0% | |
| AAAAATCGATCGAGAACTAA+AGG | + | chr7.4:89643063-89643082 | None:intergenic | 30.0% | |
| AAGAATGAATTAGGCTCAAT+AGG | - | chr7.4:89643802-89643821 | MS.gene021666:intron | 30.0% | |
| AGCACCAAAACTTATATTGA+AGG | - | chr7.4:89645353-89645372 | MS.gene021666:intron | 30.0% | |
| ATATGTGGTTACATACATGT+CGG | - | chr7.4:89645437-89645456 | MS.gene021666:intron | 30.0% | |
| CACCAAAACTTATATTGAAG+GGG | - | chr7.4:89645355-89645374 | MS.gene021666:intron | 30.0% | |
| CATTGAAAATAGACAAGGTA+TGG | - | chr7.4:89643733-89643752 | MS.gene021666:intron | 30.0% | |
| CCAAAATATACATACTTGGT+AGG | + | chr7.4:89644229-89644248 | None:intergenic | 30.0% | |
| CTAGCAACTTCATGTATATA+AGG | + | chr7.4:89645645-89645664 | None:intergenic | 30.0% | |
| GAATAATGTTGACAAAAGAG+AGG | - | chr7.4:89644987-89645006 | MS.gene021666:intron | 30.0% | |
| GAGTCTGATTAAGTACATTT+AGG | + | chr7.4:89644309-89644328 | None:intergenic | 30.0% | |
| GATGACATTATTGAATTCAG+TGG | - | chr7.4:89642837-89642856 | MS.gene021666:intron | 30.0% | |
| GCACCAAAACTTATATTGAA+GGG | - | chr7.4:89645354-89645373 | MS.gene021666:intron | 30.0% | |
| TAATGCCATACATGATTTCA+TGG | - | chr7.4:89642930-89642949 | MS.gene021666:intron | 30.0% | |
| TATAAGGAAAGTTATGAACC+TGG | + | chr7.4:89645629-89645648 | None:intergenic | 30.0% | |
| TATGTAGCTGATATGTTGTT+TGG | - | chr7.4:89644706-89644725 | MS.gene021666:intron | 30.0% | |
| TCCATGTTCCTATAAGTATT+AGG | - | chr7.4:89642517-89642536 | MS.gene021666:intron | 30.0% | |
| TCCTAATACTTATAGGAACA+TGG | + | chr7.4:89642521-89642540 | None:intergenic | 30.0% | |
| TCCTACATTGAAAATAGACA+AGG | - | chr7.4:89643728-89643747 | MS.gene021666:intron | 30.0% | |
| TCTTTCAAAACCGATTGATA+AGG | + | chr7.4:89643786-89643805 | None:intergenic | 30.0% | |
| TTCACTGACCAAAAAAGAAA+AGG | + | chr7.4:89644405-89644424 | None:intergenic | 30.0% | |
| ! | AAGTTACTTTCTTGCATAGA+TGG | - | chr7.4:89644132-89644151 | MS.gene021666:intron | 30.0% |
| ! | ACCTTGTCTATTTTCAATGT+AGG | + | chr7.4:89643732-89643751 | None:intergenic | 30.0% |
| ! | CCTACCAAGTATGTATATTT+TGG | - | chr7.4:89644226-89644245 | MS.gene021666:intron | 30.0% |
| ! | TCTCTTTTACATTAGTTGGA+TGG | - | chr7.4:89642575-89642594 | MS.gene021666:intron | 30.0% |
| ! | TTACTCCTCCTTTTCTTTTT+TGG | - | chr7.4:89644394-89644413 | MS.gene021666:intron | 30.0% |
| ! | TTTCTGGTAAAGTAGCATTT+AGG | + | chr7.4:89643143-89643162 | None:intergenic | 30.0% |
| !! | GATTTGTTTTCATCACATGT+TGG | + | chr7.4:89644344-89644363 | None:intergenic | 30.0% |
| !! | TCAAGTATTTTTCAGATGAC+TGG | - | chr7.4:89643432-89643451 | MS.gene021666:CDS | 30.0% |
| !!! | ACTTTTTTGCTAATCACTGA+TGG | - | chr7.4:89644494-89644513 | MS.gene021666:intron | 30.0% |
| !!! | CGGTTTTGAAAGAATGAATT+AGG | - | chr7.4:89643793-89643812 | MS.gene021666:intron | 30.0% |
| !!! | GCTAGTTTTGAACTATTTGT+TGG | + | chr7.4:89643458-89643477 | None:intergenic | 30.0% |
| !!! | TATATTTTGGTTGATCCCAT+TGG | - | chr7.4:89644239-89644258 | MS.gene021666:intron | 30.0% |
| AAACTCGTATTGGGATAGAA+TGG | + | chr7.4:89644565-89644584 | None:intergenic | 35.0% | |
| AAAGCTCTCCAATTACTCAT+TGG | + | chr7.4:89643672-89643691 | None:intergenic | 35.0% | |
| AACACTAATGGCTTTCTTGA+AGG | - | chr7.4:89642872-89642891 | MS.gene021666:intron | 35.0% | |
| AAGCTCTCCAATTACTCATT+GGG | + | chr7.4:89643671-89643690 | None:intergenic | 35.0% | |
| ACTGACCAAAAAAGAAAAGG+AGG | + | chr7.4:89644402-89644421 | None:intergenic | 35.0% | |
| ATTCAGTGGGTAATTTCAAG+TGG | + | chr7.4:89643095-89643114 | None:intergenic | 35.0% | |
| CAGATACAACTTTCCGAAAT+TGG | - | chr7.4:89645287-89645306 | MS.gene021666:intron | 35.0% | |
| CTAAAGTATGGTGCTTCATA+GGG | + | chr7.4:89645534-89645553 | None:intergenic | 35.0% | |
| CTTACAAAATCGACCTGTTA+AGG | + | chr7.4:89643992-89644011 | None:intergenic | 35.0% | |
| GAATACCTACAGCTAAAGTA+TGG | + | chr7.4:89645546-89645565 | None:intergenic | 35.0% | |
| GACATGTATGTAACCACATA+TGG | + | chr7.4:89645438-89645457 | None:intergenic | 35.0% | |
| GATGGATCATCAATGTTGTA+TGG | - | chr7.4:89642593-89642612 | MS.gene021666:intron | 35.0% | |
| TAAAGGAGAGAATATGACGA+GGG | + | chr7.4:89643046-89643065 | None:intergenic | 35.0% | |
| TACTTTCTTGCATAGATGGA+AGG | - | chr7.4:89644136-89644155 | MS.gene021666:intron | 35.0% | |
| TCCAAAGTAAAACGAGTATG+AGG | + | chr7.4:89645675-89645694 | None:intergenic | 35.0% | |
| TCTGATATTATGTTACCACC+AGG | + | chr7.4:89642717-89642736 | None:intergenic | 35.0% | |
| TGGTAAAGTAGCATTTAGGT+TGG | + | chr7.4:89643139-89643158 | None:intergenic | 35.0% | |
| TGTAATACTGATCAAGCCTA+AGG | + | chr7.4:89644373-89644392 | None:intergenic | 35.0% | |
| TTTGCATGTTTAGAAAGAGC+TGG | - | chr7.4:89643273-89643292 | MS.gene021666:intron | 35.0% | |
| ! | AGCATTTGTCTTGATAGTCT+TGG | + | chr7.4:89643501-89643520 | None:intergenic | 35.0% |
| ! | AGTTTCGTGCATGGATTATA+TGG | + | chr7.4:89643871-89643890 | None:intergenic | 35.0% |
| ! | ATCCTTCTTTTAGACTCAGA+GGG | - | chr7.4:89643395-89643414 | MS.gene021666:CDS | 35.0% |
| ! | ATGAGTAATTGGAGAGCTTT+TGG | - | chr7.4:89643672-89643691 | MS.gene021666:intron | 35.0% |
| ! | CACCCCTTCAATATAAGTTT+TGG | + | chr7.4:89645360-89645379 | None:intergenic | 35.0% |
| ! | TATCCTTCTTTTAGACTCAG+AGG | - | chr7.4:89643394-89643413 | MS.gene021666:CDS | 35.0% |
| ! | TCATACTCGTTTTACTTTGG+AGG | - | chr7.4:89645674-89645693 | MS.gene021666:intron | 35.0% |
| ! | TCCTCATACTCGTTTTACTT+TGG | - | chr7.4:89645671-89645690 | MS.gene021666:intron | 35.0% |
| ! | TTCAGTGGGTAATTTCAAGT+GGG | + | chr7.4:89643094-89643113 | None:intergenic | 35.0% |
| !! | CTTAACAGGTCGATTTTGTA+AGG | - | chr7.4:89643990-89644009 | MS.gene021666:intron | 35.0% |
| !!! | GTTTTAGCTTCAGTTCTTCA+GGG | - | chr7.4:89644836-89644855 | MS.gene021666:CDS | 35.0% |
| !!! | TGTTTTAGCTTCAGTTCTTC+AGG | - | chr7.4:89644835-89644854 | MS.gene021666:CDS | 35.0% |
| AAGCACCATACTTTAGCTGT+AGG | - | chr7.4:89645538-89645557 | MS.gene021666:intron | 40.0% | |
| ACACTATTGAGTTTCGTGCA+TGG | + | chr7.4:89643880-89643899 | None:intergenic | 40.0% | |
| ACATTCACTATGTGGAACTG+TGG | - | chr7.4:89644637-89644656 | MS.gene021666:intron | 40.0% | |
| AGCCAAAATACCTCAACAGA+AGG | + | chr7.4:89644880-89644899 | None:intergenic | 40.0% | |
| AGGATGATACTCGAAACAAG+TGG | - | chr7.4:89645143-89645162 | MS.gene021666:intron | 40.0% | |
| ATGTGACACACCTTTCTTGT+AGG | - | chr7.4:89643349-89643368 | MS.gene021666:intron | 40.0% | |
| CAAAACCGATTGATAAGGTG+AGG | + | chr7.4:89643781-89643800 | None:intergenic | 40.0% | |
| CAACGCCATGAAATCATGTA+TGG | + | chr7.4:89642938-89642957 | None:intergenic | 40.0% | |
| CAGTGAACACACATCAGTAT+TGG | - | chr7.4:89644418-89644437 | MS.gene021666:intron | 40.0% | |
| CCTAAAGTATGGTGCTTCAT+AGG | + | chr7.4:89645596-89645615 | None:intergenic | 40.0% | |
| CTAAAGGAGAGAATATGACG+AGG | + | chr7.4:89643047-89643066 | None:intergenic | 40.0% | |
| CTCGAAGGTTTGCGATAAAA+TGG | - | chr7.4:89642795-89642814 | MS.gene021666:intron | 40.0% | |
| GAGTATCATCCTTCAAGTGA+GGG | + | chr7.4:89645135-89645154 | None:intergenic | 40.0% | |
| GATCCTCTACACCTAAAGTA+TGG | + | chr7.4:89645607-89645626 | None:intergenic | 40.0% | |
| GCACGAAACTCAATAGTGTT+GGG | - | chr7.4:89643881-89643900 | MS.gene021666:intron | 40.0% | |
| GCCAAAATACCTCAACAGAA+GGG | + | chr7.4:89644879-89644898 | None:intergenic | 40.0% | |
| GCTAAAGTATGGTGCTTCAT+AGG | + | chr7.4:89645535-89645554 | None:intergenic | 40.0% | |
| GGACATGAAACCTACAAGAA+AGG | + | chr7.4:89643362-89643381 | None:intergenic | 40.0% | |
| GTGACATCTTTCACCTTAAC+AGG | - | chr7.4:89643976-89643995 | MS.gene021666:intron | 40.0% | |
| TAGAGCTCCCAATGAGTAAT+TGG | - | chr7.4:89643661-89643680 | MS.gene021666:intron | 40.0% | |
| TATGTGGAACTGTGGAAGTT+TGG | - | chr7.4:89644645-89644664 | MS.gene021666:intron | 40.0% | |
| TGCACGAAACTCAATAGTGT+TGG | - | chr7.4:89643880-89643899 | MS.gene021666:intron | 40.0% | |
| TTCCCTCTGAGTCTAAAAGA+AGG | + | chr7.4:89643400-89643419 | None:intergenic | 40.0% | |
| TTCCGAAATTGGATCCTCTA+CGG | - | chr7.4:89645298-89645317 | MS.gene021666:intron | 40.0% | |
| ! | AAAACATGTCAGTGTTGGGT+CGG | + | chr7.4:89645398-89645417 | None:intergenic | 40.0% |
| ! | AAGTATGGTTCTGCAGTTGT+AGG | - | chr7.4:89645324-89645343 | MS.gene021666:intron | 40.0% |
| ! | ATGTCGAAGATGGATTCAGT+GGG | + | chr7.4:89643108-89643127 | None:intergenic | 40.0% |
| ! | CCTATGAAGCACCATACTTT+AGG | - | chr7.4:89645532-89645551 | MS.gene021666:intron | 40.0% |
| ! | GGAACATGGATTAACCTTGA+TGG | + | chr7.4:89642507-89642526 | None:intergenic | 40.0% |
| ! | GGTGTGAGAGGTAACTTTTT+CGG | + | chr7.4:89645180-89645199 | None:intergenic | 40.0% |
| ! | TTCGTGCATGGATTATATGG+TGG | + | chr7.4:89643868-89643887 | None:intergenic | 40.0% |
| !! | ACCCTTCTGTTGAGGTATTT+TGG | - | chr7.4:89644875-89644894 | MS.gene021666:CDS | 40.0% |
| !! | TTGACGAGATAGTTGATGGA+GGG | - | chr7.4:89645043-89645062 | MS.gene021666:intron | 40.0% |
| !!! | GTAACTTTTTCGGCGATAAG+TGG | + | chr7.4:89645170-89645189 | None:intergenic | 40.0% |
| AAGACAAATGCTCGCACAGA+AGG | - | chr7.4:89643509-89643528 | MS.gene021666:CDS | 45.0% | |
| ACACGACTAGTGCTTCTTGA+AGG | - | chr7.4:89643172-89643191 | MS.gene021666:intron | 45.0% | |
| ACTTTAGGTGTAGAGGATCC+AGG | - | chr7.4:89645608-89645627 | MS.gene021666:intron | 45.0% | |
| AGCACTAGTCGTGTTCTCAA+AGG | + | chr7.4:89643166-89643185 | None:intergenic | 45.0% | |
| AGGCAACAAACTGCCATATG+TGG | - | chr7.4:89645422-89645441 | MS.gene021666:intron | 45.0% | |
| ATATGACGAGGGAGAAAGTG+AGG | + | chr7.4:89643035-89643054 | None:intergenic | 45.0% | |
| ATGAACACATTCAAGCGCCA+AGG | + | chr7.4:89644182-89644201 | None:intergenic | 45.0% | |
| ATGCAATCACCCTTCTGTTG+AGG | - | chr7.4:89644867-89644886 | MS.gene021666:CDS | 45.0% | |
| ATTGTATGTGTGTCTCGCGA+GGG | - | chr7.4:89642961-89642980 | MS.gene021666:intron | 45.0% | |
| CGACTCCTCACCTTATCAAT+CGG | - | chr7.4:89643773-89643792 | MS.gene021666:intron | 45.0% | |
| CGAGTATCATCCTTCAAGTG+AGG | + | chr7.4:89645136-89645155 | None:intergenic | 45.0% | |
| CTCCATCAACTATCTCGTCA+AGG | + | chr7.4:89645044-89645063 | None:intergenic | 45.0% | |
| GACCTGCATTTCTTTGTCAC+TGG | - | chr7.4:89644791-89644810 | MS.gene021666:CDS | 45.0% | |
| GCACCATACTTTAGGTGTAG+AGG | - | chr7.4:89645601-89645620 | MS.gene021666:intron | 45.0% | |
| GCATGTTTAGAAAGAGCTGG+TGG | - | chr7.4:89643276-89643295 | MS.gene021666:intron | 45.0% | |
| GGTGTGTCACATGATACTTG+TGG | + | chr7.4:89643341-89643360 | None:intergenic | 45.0% | |
| GTCGTGTTCTCAAAGGTTTC+TGG | + | chr7.4:89643159-89643178 | None:intergenic | 45.0% | |
| TAGAAAGAGCTGGTGGAAGA+GGG | - | chr7.4:89643283-89643302 | MS.gene021666:intron | 45.0% | |
| TATGACGAGGGAGAAAGTGA+GGG | + | chr7.4:89643034-89643053 | None:intergenic | 45.0% | |
| TATGGTGCTTCATAGGGTGT+TGG | + | chr7.4:89645589-89645608 | None:intergenic | 45.0% | |
| TGCCAGTGACAAAGAAATGC+AGG | + | chr7.4:89644796-89644815 | None:intergenic | 45.0% | |
| TGCCGTAGAGGATCCAATTT+CGG | + | chr7.4:89645303-89645322 | None:intergenic | 45.0% | |
| TGCCTTGACGAGATAGTTGA+TGG | - | chr7.4:89645039-89645058 | MS.gene021666:intron | 45.0% | |
| TTAGAAAGAGCTGGTGGAAG+AGG | - | chr7.4:89643282-89643301 | MS.gene021666:intron | 45.0% | |
| ! | AGTGGGTAATTTCAAGTGGG+AGG | + | chr7.4:89643091-89643110 | None:intergenic | 45.0% |
| ! | GATGTCGAAGATGGATTCAG+TGG | + | chr7.4:89643109-89643128 | None:intergenic | 45.0% |
| ! | GTTGATGGAGGGTATGCAAT+TGG | - | chr7.4:89645054-89645073 | MS.gene021666:intron | 45.0% |
| !! | AAGAGAGGCACTTGAGAACT+TGG | - | chr7.4:89645002-89645021 | MS.gene021666:intron | 45.0% |
| !! | ATACATGTCGGTGTCGTGTA+TGG | - | chr7.4:89645449-89645468 | MS.gene021666:intron | 45.0% |
| !! | CTTGACGAGATAGTTGATGG+AGG | - | chr7.4:89645042-89645061 | MS.gene021666:intron | 45.0% |
| CATTGTATGTGTGTCTCGCG+AGG | - | chr7.4:89642960-89642979 | MS.gene021666:intron | 50.0% | |
| GAACCATACTTCTGCCGTAG+AGG | + | chr7.4:89645315-89645334 | None:intergenic | 50.0% | |
| GATCCTCTACGGCAGAAGTA+TGG | - | chr7.4:89645309-89645328 | MS.gene021666:intron | 50.0% | |
| GGCTGAACTGATGTCGAAGA+TGG | + | chr7.4:89643118-89643137 | None:intergenic | 50.0% | |
| GTCAGCATCTATGGTGTGAG+AGG | + | chr7.4:89645192-89645211 | None:intergenic | 50.0% | |
| TAGCACTACCTGCTCAGACA+AGG | + | chr7.4:89645219-89645238 | None:intergenic | 50.0% | |
| ! | CTCAATAGTGTTGGGCGTGA+TGG | - | chr7.4:89643889-89643908 | MS.gene021666:intron | 50.0% |
| ! | TGGGCGTGATGGAGTGTATT+GGG | - | chr7.4:89643900-89643919 | MS.gene021666:intron | 50.0% |
| ! | TTGGGCGTGATGGAGTGTAT+TGG | - | chr7.4:89643899-89643918 | MS.gene021666:intron | 50.0% |
| CAAGGCGGAGTCAGCATCTA+TGG | + | chr7.4:89645201-89645220 | None:intergenic | 55.0% | |
| CACTACCTGCTCAGACAAGG+CGG | + | chr7.4:89645216-89645235 | None:intergenic | 55.0% | |
| GCAGACGCTAACGCAAGCAT+GGG | - | chr7.4:89645806-89645825 | MS.gene021666:intron | 55.0% | |
| TGCAGACGCTAACGCAAGCA+TGG | - | chr7.4:89645805-89645824 | MS.gene021666:intron | 55.0% | |
| ! | CGTGTGCTGATGTTGCAACC+TGG | - | chr7.4:89642696-89642715 | MS.gene021666:intron | 55.0% |
| ! | GTGCTGATGTTGCAACCTGG+TGG | - | chr7.4:89642699-89642718 | MS.gene021666:intron | 55.0% |
| TGACTCCGCCTTGTCTGAGC+AGG | - | chr7.4:89645208-89645227 | MS.gene021666:intron | 60.0% | |
| ! | TGTCAGTGTTGGGTCGGCGT+TGG | + | chr7.4:89645392-89645411 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 89642400 | 89645869 | 89642400 | ID=MS.gene021666 |
| chr7.4 | mRNA | 89642400 | 89645869 | 89642400 | ID=MS.gene021666.t1;Parent=MS.gene021666 |
| chr7.4 | exon | 89645858 | 89645869 | 89645858 | ID=MS.gene021666.t1.exon1;Parent=MS.gene021666.t1 |
| chr7.4 | CDS | 89645858 | 89645869 | 89645858 | ID=cds.MS.gene021666.t1;Parent=MS.gene021666.t1 |
| chr7.4 | exon | 89644739 | 89644898 | 89644739 | ID=MS.gene021666.t1.exon2;Parent=MS.gene021666.t1 |
| chr7.4 | CDS | 89644739 | 89644898 | 89644739 | ID=cds.MS.gene021666.t1;Parent=MS.gene021666.t1 |
| chr7.4 | exon | 89643381 | 89643528 | 89643381 | ID=MS.gene021666.t1.exon3;Parent=MS.gene021666.t1 |
| chr7.4 | CDS | 89643381 | 89643528 | 89643381 | ID=cds.MS.gene021666.t1;Parent=MS.gene021666.t1 |
| chr7.4 | exon | 89643205 | 89643282 | 89643205 | ID=MS.gene021666.t1.exon4;Parent=MS.gene021666.t1 |
| chr7.4 | CDS | 89643205 | 89643282 | 89643205 | ID=cds.MS.gene021666.t1;Parent=MS.gene021666.t1 |
| chr7.4 | exon | 89643040 | 89643124 | 89643040 | ID=MS.gene021666.t1.exon5;Parent=MS.gene021666.t1 |
| chr7.4 | CDS | 89643040 | 89643124 | 89643040 | ID=cds.MS.gene021666.t1;Parent=MS.gene021666.t1 |
| chr7.4 | exon | 89642400 | 89642459 | 89642400 | ID=MS.gene021666.t1.exon6;Parent=MS.gene021666.t1 |
| chr7.4 | CDS | 89642400 | 89642459 | 89642400 | ID=cds.MS.gene021666.t1;Parent=MS.gene021666.t1 |
| Gene Sequence |
| Protein sequence |
