AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene012997

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012997.t1 MTR_3g101420 95.570 316 14 0 1 316 1 316 0.0 620
MS.gene012997.t1 MTR_4g086510 43.077 325 170 7 1 316 1 319 2.64e-93 280
MS.gene012997.t1 MTR_4g086480 42.901 324 169 5 1 314 1 318 2.44e-91 275
MS.gene012997.t1 MTR_5g005850 42.812 320 174 6 4 314 9 328 6.51e-90 271
MS.gene012997.t1 MTR_7g056207 42.405 316 168 6 8 315 41 350 2.92e-88 268
MS.gene012997.t1 MTR_4g086540 44.373 311 144 5 8 314 19 304 1.09e-85 260
MS.gene012997.t1 MTR_4g086470 43.590 312 165 4 10 316 14 319 9.00e-85 258
MS.gene012997.t1 MTR_1g105020 40.446 314 176 5 10 314 11 322 2.50e-82 252
MS.gene012997.t1 MTR_3g450680 40.379 317 181 5 8 316 17 333 3.61e-79 244
MS.gene012997.t1 MTR_1g104930 43.963 323 168 7 2 316 7 324 1.06e-73 230
MS.gene012997.t1 MTR_5g005920 37.383 321 187 6 8 316 14 332 4.76e-73 228
MS.gene012997.t1 MTR_8g040860 39.806 309 177 5 15 316 24 330 2.34e-70 221
MS.gene012997.t1 MTR_7g051020 40.923 325 178 7 2 316 7 327 2.11e-69 219
MS.gene012997.t1 MTR_5g005900 38.154 325 189 7 3 316 5 328 4.64e-67 213
MS.gene012997.t1 MTR_1g104933 42.222 315 169 7 8 316 11 318 4.14e-64 205
MS.gene012997.t1 MTR_1g012430 35.443 316 187 6 8 316 4 309 1.34e-53 178
MS.gene012997.t1 MTR_1g111280 35.647 317 180 7 8 312 27 331 1.46e-53 179
MS.gene012997.t1 MTR_7g406880 34.347 329 183 10 15 316 29 351 6.10e-51 172
MS.gene012997.t1 MTR_4g050140 32.372 312 194 6 15 316 13 317 1.49e-47 162
MS.gene012997.t1 MTR_7g107040 31.715 309 197 5 14 314 14 316 3.37e-44 154
MS.gene012997.t1 MTR_6g464120 35.094 265 150 6 15 265 24 280 3.17e-41 150
MS.gene012997.t1 MTR_8g035520 31.629 313 196 8 15 316 21 326 9.99e-40 142
MS.gene012997.t1 MTR_8g035540 31.429 315 194 9 15 314 9 316 1.06e-39 142
MS.gene012997.t1 MTR_1g102160 32.509 283 160 9 15 276 19 291 2.71e-39 141
MS.gene012997.t1 MTR_1g102170 34.483 261 148 7 20 266 43 294 2.28e-38 139
MS.gene012997.t1 MTR_6g464510 33.439 314 177 9 20 315 28 327 5.07e-38 137
MS.gene012997.t1 MTR_6g065270 32.131 305 171 9 34 316 47 337 1.50e-37 137
MS.gene012997.t1 MTR_0007s0520 31.661 319 184 9 17 316 23 326 1.56e-37 136
MS.gene012997.t1 MTR_1g082210 32.530 249 138 5 32 261 53 290 9.23e-36 132
MS.gene012997.t1 MTR_6g065400 31.000 300 177 7 34 316 49 335 2.05e-35 131
MS.gene012997.t1 MTR_6g065370 31.333 300 176 7 34 316 49 335 2.83e-35 130
MS.gene012997.t1 MTR_3g012440 29.499 339 201 10 10 316 10 342 2.42e-33 125
MS.gene012997.t1 MTR_1g089310 30.323 310 171 9 20 297 38 334 4.89e-33 125
MS.gene012997.t1 MTR_1g089310 32.389 247 141 6 65 297 116 350 5.97e-33 125
MS.gene012997.t1 MTR_6g065110 31.525 295 172 7 38 315 54 335 1.08e-32 124
MS.gene012997.t1 MTR_6g464320 30.503 318 187 10 18 315 23 326 1.35e-32 123
MS.gene012997.t1 MTR_6g464280 30.909 330 180 10 14 315 16 325 6.18e-32 121
MS.gene012997.t1 MTR_6g065340 30.068 296 169 7 34 316 60 330 2.10e-31 120
MS.gene012997.t1 MTR_6g065120 29.900 301 180 8 34 316 50 337 2.00e-30 118
MS.gene012997.t1 MTR_8g035500 29.537 281 170 8 15 276 12 283 4.99e-30 116
MS.gene012997.t1 MTR_7g093950 31.290 310 172 12 32 315 53 347 1.52e-29 115
MS.gene012997.t1 MTR_6g065430 28.956 297 182 8 32 314 46 327 2.41e-26 106
MS.gene012997.t1 MTR_6g022710 28.049 246 138 9 63 272 153 395 2.55e-18 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012997.t1 AT1G47480 54.688 320 132 5 1 316 1 311 1.63e-125 362
MS.gene012997.t1 AT3G48690 41.009 317 171 5 10 314 8 320 8.62e-82 251
MS.gene012997.t1 AT3G48700 41.379 319 166 6 13 314 11 325 4.69e-81 249
MS.gene012997.t1 AT2G03550 41.214 313 172 6 9 316 7 312 1.40e-80 247
MS.gene012997.t1 AT1G49650 42.173 313 167 6 12 315 66 373 5.11e-80 248
MS.gene012997.t1 AT1G49640 41.667 312 162 7 13 314 12 313 2.73e-76 236
MS.gene012997.t1 AT1G19190 39.308 318 174 6 9 316 7 315 4.29e-75 233
MS.gene012997.t1 AT1G49660 41.587 315 169 6 10 314 8 317 1.18e-74 232
MS.gene012997.t1 AT5G16080 33.333 327 186 10 8 315 29 342 4.51e-48 164
MS.gene012997.t1 AT1G68620 35.117 299 166 8 10 296 26 308 7.02e-48 164
MS.gene012997.t1 AT5G06570 32.051 312 198 6 15 315 18 326 3.12e-39 141
MS.gene012997.t1 AT5G06570 32.051 312 198 6 15 315 18 326 3.12e-39 141
MS.gene012997.t1 AT5G06570 32.051 312 198 6 15 315 33 341 4.51e-39 141
MS.gene012997.t1 AT5G06570 32.051 312 198 6 15 315 33 341 4.51e-39 141
MS.gene012997.t1 AT3G05120 30.094 319 186 7 20 315 38 342 2.88e-38 139
MS.gene012997.t1 AT5G27320 29.968 317 187 7 20 315 38 340 1.20e-37 137
MS.gene012997.t1 AT2G45600 31.447 318 182 11 15 314 16 315 1.38e-35 131
MS.gene012997.t1 AT3G63010 30.035 283 170 6 36 302 69 339 1.70e-35 132
MS.gene012997.t1 AT2G45610 28.797 316 202 9 15 315 17 324 6.65e-34 127
MS.gene012997.t1 AT5G23530 31.438 299 171 9 32 316 50 328 9.33e-32 121
MS.gene012997.t1 AT5G62180 31.773 299 173 8 34 314 38 323 1.69e-31 120
MS.gene012997.t1 AT3G27320 28.794 257 138 10 58 272 120 373 1.62e-18 85.9
MS.gene012997.t1 AT3G27320 28.794 257 138 10 58 272 152 405 1.94e-18 85.9

Find 77 sgRNAs with CRISPR-Local

Find 90 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATTTCAATTTCAAGATTT+TGG 0.035715 3.2:-84505090 MS.gene012997:CDS
ATTGAAATTATTATCCTTTA+AGG 0.053225 3.2:+84505103 None:intergenic
TCATGGTGAATCCTTACTTT+TGG 0.204822 3.2:-84505061 MS.gene012997:CDS
CAGCCGCTTACAATGATTCT+TGG 0.307666 3.2:-84505268 MS.gene012997:CDS
TAAACTTTATCATAATATAT+TGG 0.313129 3.2:-84504832 MS.gene012997:CDS
TGGGAGGATTGTGATGTCTT+TGG 0.313418 3.2:+84505496 None:intergenic
AGGAAACTACATAGCCTTAA+AGG 0.329994 3.2:-84505117 MS.gene012997:CDS
TTGAGGGAGTTATGGTAAAC+AGG 0.343629 3.2:+84505362 None:intergenic
CATAATATATTGGTTAATAG+TGG 0.368553 3.2:-84504822 MS.gene012997:CDS
GGTGGATAGATGGTGGGAAT+TGG 0.384327 3.2:-84504988 MS.gene012997:CDS
TCGCTATCTCGGTTAATTAC+CGG 0.400920 3.2:-84505313 MS.gene012997:CDS
TTCTGCTACAAGTTTGTTGA+GGG 0.402134 3.2:+84505346 None:intergenic
CAAGTTTGTTGAGGGAGTTA+TGG 0.402947 3.2:+84505354 None:intergenic
GAAGAAGCTCCAGGGCTTGA+AGG 0.418009 3.2:-84504915 MS.gene012997:CDS
TTGGTTTGTCCATCTGATAA+AGG 0.425987 3.2:-84504969 MS.gene012997:CDS
GCTGAATTATATGAGATTCA+AGG 0.430850 3.2:-84504786 MS.gene012997:CDS
GGTTCCTTACCCCAAAAGTA+AGG 0.432228 3.2:+84505050 None:intergenic
TCACTTATTTCCACACCAAT+TGG 0.436714 3.2:+84505029 None:intergenic
CCATTGATTGTATACTTCCA+TGG 0.437221 3.2:-84505416 MS.gene012997:CDS
AAGAGAATGATTATGAAAGT+TGG 0.440131 3.2:-84505202 MS.gene012997:CDS
TCCTTTGATTAATCCGTTTG+TGG 0.442157 3.2:-84504937 MS.gene012997:CDS
GCTCCAGGGCTTGAAGGGTT+AGG 0.452764 3.2:-84504909 MS.gene012997:CDS
ATTCTTGGGAAGCAGTTCAA+TGG 0.455054 3.2:-84505253 MS.gene012997:CDS
AGAGGATGAAGATATACAAT+AGG 0.456378 3.2:+84505388 None:intergenic
TCATTGTAAGCGGCTGGAAG+TGG 0.457974 3.2:+84505275 None:intergenic
AGCCGCTTACAATGATTCTT+GGG 0.464184 3.2:-84505267 MS.gene012997:CDS
TCATAGATTTGTCGATGGGT+TGG 0.464440 3.2:+84505620 None:intergenic
AGAGAAGAATGGTGGATAGA+TGG 0.464480 3.2:-84504998 MS.gene012997:CDS
AAAGATATATTGATAGAAAG+AGG 0.465976 3.2:-84504855 MS.gene012997:CDS
CCATGGAAGTATACAATCAA+TGG 0.470075 3.2:+84505416 None:intergenic
GTGGATGTTCCGGTGCTAAC+CGG 0.472727 3.2:+84505294 None:intergenic
CCGTTTGTGGAAGAAGCTCC+AGG 0.475107 3.2:-84504924 MS.gene012997:CDS
ATATATTGGTTAATAGTGGT+TGG 0.476791 3.2:-84504818 MS.gene012997:CDS
CAAGAATCATTGTAAGCGGC+TGG 0.479330 3.2:+84505269 None:intergenic
CTTCTGCTACAAGTTTGTTG+AGG 0.480079 3.2:+84505345 None:intergenic
GGCATTGGCGTCGTTCCTCC+CGG 0.480972 3.2:-84505545 MS.gene012997:CDS
GCGGCTGGAAGTGGATGTTC+CGG 0.485630 3.2:+84505284 None:intergenic
TTGGAGATAACGTTTGTTTG+AGG 0.489762 3.2:+84505515 None:intergenic
CCTGGAGCTTCTTCCACAAA+CGG 0.490261 3.2:+84504924 None:intergenic
GTTTGTTTGAGGATCGATGC+CGG 0.495904 3.2:+84505526 None:intergenic
AACTTCATAGATTTGTCGAT+GGG 0.496050 3.2:+84505616 None:intergenic
TCATCATTTCCTTTATCAGA+TGG 0.496874 3.2:+84504960 None:intergenic
TTTGTTTGAGGATCGATGCC+GGG 0.502447 3.2:+84505527 None:intergenic
TTCTTGGCAGGTGATAGTGC+AGG 0.508682 3.2:-84505149 MS.gene012997:CDS
GTCGAAAGATATGCCGGCAT+TGG 0.510442 3.2:-84505560 MS.gene012997:CDS
GCTTCACATGCTGTTGAAGA+TGG 0.513321 3.2:-84505227 MS.gene012997:CDS
GGGAGGAACGACGCCAATGC+CGG 0.515304 3.2:+84505547 None:intergenic
CTGAATTATATGAGATTCAA+GGG 0.517407 3.2:-84504785 MS.gene012997:CDS
CTCTTAGCTTTATCACACTC+AGG 0.520717 3.2:+84504735 None:intergenic
ACACCTAACCCTTCAAGCCC+TGG 0.529370 3.2:+84504906 None:intergenic
ATATAGTCTTGCTGTGACAC+CGG 0.533831 3.2:+84505469 None:intergenic
AGCAAACATCATCGCTATCT+CGG 0.546431 3.2:-84505324 MS.gene012997:CDS
TTGGTTAATAGTGGTTGGAA+AGG 0.546510 3.2:-84504813 MS.gene012997:CDS
GAAGAATGGTGGATAGATGG+TGG 0.548405 3.2:-84504995 MS.gene012997:CDS
AAGAAGCTCCAGGGCTTGAA+GGG 0.550930 3.2:-84504914 MS.gene012997:CDS
TCCACAAACGGATTAATCAA+AGG 0.558343 3.2:+84504936 None:intergenic
AAGAATGGTGGATAGATGGT+GGG 0.558366 3.2:-84504994 MS.gene012997:CDS
GAACTTCATAGATTTGTCGA+TGG 0.569806 3.2:+84505615 None:intergenic
GATAGTGCAGGTGCTAACAT+AGG 0.572065 3.2:-84505137 MS.gene012997:CDS
GGTTAATTACCGGTTAGCAC+CGG 0.599685 3.2:-84505303 MS.gene012997:CDS
GGGTAAGGAACCAATTGGTG+TGG 0.605765 3.2:-84505039 MS.gene012997:CDS
TTCCCAAGAATCATTGTAAG+CGG 0.612607 3.2:+84505265 None:intergenic
GGTACCGTCGAAAGATATGC+CGG 0.612722 3.2:-84505566 MS.gene012997:CDS
CGTTTGTGGAAGAAGCTCCA+GGG 0.617332 3.2:-84504923 MS.gene012997:CDS
TCTTTGTGTACACGAAGGTA+GGG 0.619638 3.2:+84505590 None:intergenic
GTTATGGTAAACAGGGTCAG+AGG 0.624470 3.2:+84505370 None:intergenic
TGATGATTTGAAGAGAAGAA+TGG 0.628091 3.2:-84505009 MS.gene012997:CDS
GTCTTTGTGTACACGAAGGT+AGG 0.633999 3.2:+84505589 None:intergenic
TACCTTCGTGTACACAAAGA+CGG 0.636875 3.2:-84505587 MS.gene012997:CDS
TGATTTGAAGAGAAGAATGG+TGG 0.647899 3.2:-84505006 MS.gene012997:CDS
AATGCCGGCATATCTTTCGA+CGG 0.666567 3.2:+84505562 None:intergenic
TGAGGGAGTTATGGTAAACA+GGG 0.672820 3.2:+84505363 None:intergenic
TTGATTGTATACTTCCATGG+TGG 0.674326 3.2:-84505413 MS.gene012997:CDS
GTTTGAGGATCGATGCCGGG+AGG 0.683731 3.2:+84505530 None:intergenic
TTGTGTACACGAAGGTAGGG+AGG 0.684898 3.2:+84505593 None:intergenic
ATATACAATAGGCTCCACCA+TGG 0.708865 3.2:+84505399 None:intergenic
TACCGTCTTTGTGTACACGA+AGG 0.725120 3.2:+84505585 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAACTTTATCATAATATAT+TGG - chr3.2:84505492-84505511 MS.gene012997:CDS 10.0%
!! ATTGAAATTATTATCCTTTA+AGG + chr3.2:84505224-84505243 None:intergenic 15.0%
!!! AATTTCAATTTCAAGATTTT+GGG - chr3.2:84505235-84505254 MS.gene012997:CDS 15.0%
!!! TAATTTCAATTTCAAGATTT+TGG - chr3.2:84505234-84505253 MS.gene012997:CDS 15.0%
!! AAAGATATATTGATAGAAAG+AGG - chr3.2:84505469-84505488 MS.gene012997:CDS 20.0%
!!! CATAATATATTGGTTAATAG+TGG - chr3.2:84505502-84505521 MS.gene012997:CDS 20.0%
! AAGAGAATGATTATGAAAGT+TGG - chr3.2:84505122-84505141 MS.gene012997:CDS 25.0%
! CTGAATTATATGAGATTCAA+GGG - chr3.2:84505539-84505558 MS.gene012997:CDS 25.0%
!! ATATATTGGTTAATAGTGGT+TGG - chr3.2:84505506-84505525 MS.gene012997:CDS 25.0%
!! TGACTTTAACAAAGTTTTCT+TGG - chr3.2:84505159-84505178 MS.gene012997:CDS 25.0%
!!! TTTTCTGAAGTTGAATTGTT+TGG + chr3.2:84504884-84504903 None:intergenic 25.0%
AACTTCATAGATTTGTCGAT+GGG + chr3.2:84504711-84504730 None:intergenic 30.0%
AGAGGATGAAGATATACAAT+AGG + chr3.2:84504939-84504958 None:intergenic 30.0%
GCTGAATTATATGAGATTCA+AGG - chr3.2:84505538-84505557 MS.gene012997:CDS 30.0%
TCATCATTTCCTTTATCAGA+TGG + chr3.2:84505367-84505386 None:intergenic 30.0%
TGATGATTTGAAGAGAAGAA+TGG - chr3.2:84505315-84505334 MS.gene012997:CDS 30.0%
! TTTAACAAAGTTTTCTTGGC+AGG - chr3.2:84505163-84505182 MS.gene012997:CDS 30.0%
GAACTTCATAGATTTGTCGA+TGG + chr3.2:84504712-84504731 None:intergenic 35.0%
TCACTTATTTCCACACCAAT+TGG + chr3.2:84505298-84505317 None:intergenic 35.0%
TCCTTTGATTAATCCGTTTG+TGG - chr3.2:84505387-84505406 MS.gene012997:CDS 35.0%
TGATTTGAAGAGAAGAATGG+TGG - chr3.2:84505318-84505337 MS.gene012997:CDS 35.0%
TTCCCAAGAATCATTGTAAG+CGG + chr3.2:84505062-84505081 None:intergenic 35.0%
TTGATTGTATACTTCCATGG+TGG - chr3.2:84504911-84504930 MS.gene012997:CDS 35.0%
TTGGAGATAACGTTTGTTTG+AGG + chr3.2:84504812-84504831 None:intergenic 35.0%
TTGGTTAATAGTGGTTGGAA+AGG - chr3.2:84505511-84505530 MS.gene012997:CDS 35.0%
! AGGAAACTACATAGCCTTAA+AGG - chr3.2:84505207-84505226 MS.gene012997:CDS 35.0%
! CCATGGAAGTATACAATCAA+TGG + chr3.2:84504911-84504930 None:intergenic 35.0%
! CCATTGATTGTATACTTCCA+TGG - chr3.2:84504908-84504927 MS.gene012997:CDS 35.0%
! TCATGGTGAATCCTTACTTT+TGG - chr3.2:84505263-84505282 MS.gene012997:CDS 35.0%
!! ATGGTGAATCCTTACTTTTG+GGG - chr3.2:84505265-84505284 MS.gene012997:CDS 35.0%
!! CAAGATTTTGGGTCTTATCA+TGG - chr3.2:84505246-84505265 MS.gene012997:CDS 35.0%
!! CATGGTGAATCCTTACTTTT+GGG - chr3.2:84505264-84505283 MS.gene012997:CDS 35.0%
!! TCCACAAACGGATTAATCAA+AGG + chr3.2:84505391-84505410 None:intergenic 35.0%
!! TTCTGCTACAAGTTTGTTGA+GGG + chr3.2:84504981-84505000 None:intergenic 35.0%
!! TTGGTTTGTCCATCTGATAA+AGG - chr3.2:84505355-84505374 MS.gene012997:CDS 35.0%
AGCAAACATCATCGCTATCT+CGG - chr3.2:84505000-84505019 MS.gene012997:CDS 40.0%
AGCCGCTTACAATGATTCTT+GGG - chr3.2:84505057-84505076 MS.gene012997:CDS 40.0%
ATATACAATAGGCTCCACCA+TGG + chr3.2:84504928-84504947 None:intergenic 40.0%
ATCACAATCCTCCCAAAAAC+CGG - chr3.2:84504836-84504855 MS.gene012997:CDS 40.0%
ATTCTTGGGAAGCAGTTCAA+TGG - chr3.2:84505071-84505090 MS.gene012997:CDS 40.0%
TACCTTCGTGTACACAAAGA+CGG - chr3.2:84504737-84504756 MS.gene012997:CDS 40.0%
TCATAGATTTGTCGATGGGT+TGG + chr3.2:84504707-84504726 None:intergenic 40.0%
TCGCTATCTCGGTTAATTAC+CGG - chr3.2:84505011-84505030 MS.gene012997:CDS 40.0%
TCTTTGTGTACACGAAGGTA+GGG + chr3.2:84504737-84504756 None:intergenic 40.0%
TGAGGGAGTTATGGTAAACA+GGG + chr3.2:84504964-84504983 None:intergenic 40.0%
TTGAGGGAGTTATGGTAAAC+AGG + chr3.2:84504965-84504984 None:intergenic 40.0%
! ATATAGTCTTGCTGTGACAC+CGG + chr3.2:84504858-84504877 None:intergenic 40.0%
!! AAGAATGGTGGATAGATGGT+GGG - chr3.2:84505330-84505349 MS.gene012997:CDS 40.0%
!! AGAGAAGAATGGTGGATAGA+TGG - chr3.2:84505326-84505345 MS.gene012997:CDS 40.0%
!! CAAGTTTGTTGAGGGAGTTA+TGG + chr3.2:84504973-84504992 None:intergenic 40.0%
!! CTCTTAGCTTTATCACACTC+AGG + chr3.2:84505592-84505611 None:intergenic 40.0%
!! CTTCTGCTACAAGTTTGTTG+AGG + chr3.2:84504982-84505001 None:intergenic 40.0%
!!! GAATCCTTACTTTTGGGGTA+AGG - chr3.2:84505270-84505289 MS.gene012997:CDS 40.0%
!!! TTTTGGGGTAAGGAACCAAT+TGG - chr3.2:84505280-84505299 MS.gene012997:CDS 40.0%
AATGCCGGCATATCTTTCGA+CGG + chr3.2:84504765-84504784 None:intergenic 45.0%
CAAGAATCATTGTAAGCGGC+TGG + chr3.2:84505058-84505077 None:intergenic 45.0%
CAGCCGCTTACAATGATTCT+TGG - chr3.2:84505056-84505075 MS.gene012997:CDS 45.0%
GATAGTGCAGGTGCTAACAT+AGG - chr3.2:84505187-84505206 MS.gene012997:CDS 45.0%
GCTTCACATGCTGTTGAAGA+TGG - chr3.2:84505097-84505116 MS.gene012997:CDS 45.0%
GGTTCCTTACCCCAAAAGTA+AGG + chr3.2:84505277-84505296 None:intergenic 45.0%
GTCTTTGTGTACACGAAGGT+AGG + chr3.2:84504738-84504757 None:intergenic 45.0%
GTTATGGTAAACAGGGTCAG+AGG + chr3.2:84504957-84504976 None:intergenic 45.0%
GTTTGTTTGAGGATCGATGC+CGG + chr3.2:84504801-84504820 None:intergenic 45.0%
TACCGTCTTTGTGTACACGA+AGG + chr3.2:84504742-84504761 None:intergenic 45.0%
TGGGAGGATTGTGATGTCTT+TGG + chr3.2:84504831-84504850 None:intergenic 45.0%
TTTGTTTGAGGATCGATGCC+GGG + chr3.2:84504800-84504819 None:intergenic 45.0%
! GGTTAATTACCGGTTAGCAC+CGG - chr3.2:84505021-84505040 MS.gene012997:CDS 45.0%
!! GAAGAATGGTGGATAGATGG+TGG - chr3.2:84505329-84505348 MS.gene012997:CDS 45.0%
!!! TTGCTGTGACACCGGTTTTT+GGG + chr3.2:84504850-84504869 None:intergenic 45.0%
AAGAAGCTCCAGGGCTTGAA+GGG - chr3.2:84505410-84505429 MS.gene012997:CDS 50.0%
CCTGGAGCTTCTTCCACAAA+CGG + chr3.2:84505403-84505422 None:intergenic 50.0%
CGTTTGTGGAAGAAGCTCCA+GGG - chr3.2:84505401-84505420 MS.gene012997:CDS 50.0%
GGGTAAGGAACCAATTGGTG+TGG - chr3.2:84505285-84505304 MS.gene012997:CDS 50.0%
GGTACCGTCGAAAGATATGC+CGG - chr3.2:84504758-84504777 MS.gene012997:CDS 50.0%
GTCGAAAGATATGCCGGCAT+TGG - chr3.2:84504764-84504783 MS.gene012997:CDS 50.0%
TCATTGTAAGCGGCTGGAAG+TGG + chr3.2:84505052-84505071 None:intergenic 50.0%
TTGTGTACACGAAGGTAGGG+AGG + chr3.2:84504734-84504753 None:intergenic 50.0%
! TTCTTGGCAGGTGATAGTGC+AGG - chr3.2:84505175-84505194 MS.gene012997:CDS 50.0%
!! GGTGGATAGATGGTGGGAAT+TGG - chr3.2:84505336-84505355 MS.gene012997:CDS 50.0%
!!! CTTGCTGTGACACCGGTTTT+TGG + chr3.2:84504851-84504870 None:intergenic 50.0%
ACACCTAACCCTTCAAGCCC+TGG + chr3.2:84505421-84505440 None:intergenic 55.0%
CCGTTTGTGGAAGAAGCTCC+AGG - chr3.2:84505400-84505419 MS.gene012997:CDS 55.0%
GAAGAAGCTCCAGGGCTTGA+AGG - chr3.2:84505409-84505428 MS.gene012997:CDS 55.0%
! GTGGATGTTCCGGTGCTAAC+CGG + chr3.2:84505033-84505052 None:intergenic 55.0%
!!! CTGTGACACCGGTTTTTGGG+AGG + chr3.2:84504847-84504866 None:intergenic 55.0%
GCGGCTGGAAGTGGATGTTC+CGG + chr3.2:84505043-84505062 None:intergenic 60.0%
GCTCCAGGGCTTGAAGGGTT+AGG - chr3.2:84505415-84505434 MS.gene012997:CDS 60.0%
GTTTGAGGATCGATGCCGGG+AGG + chr3.2:84504797-84504816 None:intergenic 60.0%
GGGAGGAACGACGCCAATGC+CGG + chr3.2:84504780-84504799 None:intergenic 65.0%
!! GGCATTGGCGTCGTTCCTCC+CGG - chr3.2:84504779-84504798 MS.gene012997:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 84504698 84505648 84504698 ID=MS.gene012997
chr3.2 mRNA 84504698 84505648 84504698 ID=MS.gene012997.t1;Parent=MS.gene012997
chr3.2 exon 84504698 84505648 84504698 ID=MS.gene012997.t1.exon1;Parent=MS.gene012997.t1
chr3.2 CDS 84504698 84505648 84504698 ID=cds.MS.gene012997.t1;Parent=MS.gene012997.t1
Gene Sequence

>MS.gene012997

ATGGATCCAACCCATCGACAAATCTATGAAGTTCCTCCCTACCTTCGTGTACACAAAGACGGTACCGTCGAAAGATATGCCGGCATTGGCGTCGTTCCTCCCGGCATCGATCCTCAAACAAACGTTATCTCCAAAGACATCACAATCCTCCCAAAAACCGGTGTCACAGCAAGACTATATTCTCCAAACAATTCAACTTCAGAAAAGCTTCCATTGATTGTATACTTCCATGGTGGAGCCTATTGTATATCTTCATCCTCTGACCCTGTTTACCATAACTCCCTCAACAAACTTGTAGCAGAAGCAAACATCATCGCTATCTCGGTTAATTACCGGTTAGCACCGGAACATCCACTTCCAGCCGCTTACAATGATTCTTGGGAAGCAGTTCAATGGATTGCTTCACATGCTGTTGAAGATGGTGAAGAGAATGATTATGAAAGTTGGCTTAAAGAAAAAGTTGACTTTAACAAAGTTTTCTTGGCAGGTGATAGTGCAGGTGCTAACATAGGAAACTACATAGCCTTAAAGGATAATAATTTCAATTTCAAGATTTTGGGTCTTATCATGGTGAATCCTTACTTTTGGGGTAAGGAACCAATTGGTGTGGAAATAAGTGATGATTTGAAGAGAAGAATGGTGGATAGATGGTGGGAATTGGTTTGTCCATCTGATAAAGGAAATGATGATCCTTTGATTAATCCGTTTGTGGAAGAAGCTCCAGGGCTTGAAGGGTTAGGTGTTGAAAAAGTTCTTGTTACTGTTTGTGAGAAAGATATATTGATAGAAAGAGGTAAACTTTATCATAATATATTGGTTAATAGTGGTTGGAAAGGAACTGCTGAATTATATGAGATTCAAGGGAAAGATCATGTGTTTCATATTTTCAATCCTGAGTGTGATAAAGCTAAGAGTTTGATTAAACGCATAGCTGTTTTCATCAATGAATAG
Protein sequence

>MS.gene012997.t1

MDPTHRQIYEVPPYLRVHKDGTVERYAGIGVVPPGIDPQTNVISKDITILPKTGVTARLYSPNNSTSEKLPLIVYFHGGAYCISSSSDPVYHNSLNKLVAEANIIAISVNYRLAPEHPLPAAYNDSWEAVQWIASHAVEDGEENDYESWLKEKVDFNKVFLAGDSAGANIGNYIALKDNNFNFKILGLIMVNPYFWGKEPIGVEISDDLKRRMVDRWWELVCPSDKGNDDPLINPFVEEAPGLEGLGVEKVLVTVCEKDILIERGKLYHNILVNSGWKGTAELYEIQGKDHVFHIFNPECDKAKSLIKRIAVFINE