AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23692

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23692.t1 MTR_7g056207 93.498 323 21 0 2 324 34 356 0.0 629
MS.gene23692.t1 MTR_4g086510 86.164 318 44 0 1 318 1 318 0.0 573
MS.gene23692.t1 MTR_4g086480 62.037 324 116 3 1 320 1 321 1.62e-155 438
MS.gene23692.t1 MTR_4g086470 60.372 323 122 3 1 320 1 320 7.07e-141 401
MS.gene23692.t1 MTR_4g086540 43.987 316 154 3 2 317 12 304 2.34e-94 283
MS.gene23692.t1 MTR_3g101420 43.671 316 164 5 9 318 8 315 9.04e-93 279
MS.gene23692.t1 MTR_5g005850 43.865 326 167 8 3 317 8 328 1.14e-89 271
MS.gene23692.t1 MTR_1g105020 44.172 326 169 8 1 317 1 322 1.34e-88 268
MS.gene23692.t1 MTR_3g450680 41.463 328 176 8 2 318 10 332 1.91e-81 250
MS.gene23692.t1 MTR_5g005900 42.424 330 175 9 1 318 1 327 2.81e-76 237
MS.gene23692.t1 MTR_8g040860 40.312 320 178 8 7 318 15 329 1.21e-75 235
MS.gene23692.t1 MTR_5g005920 38.788 330 183 9 2 317 6 330 6.21e-74 231
MS.gene23692.t1 MTR_1g104930 41.304 322 176 7 4 318 8 323 3.89e-71 224
MS.gene23692.t1 MTR_7g051020 40.062 322 183 7 4 318 8 326 1.28e-67 215
MS.gene23692.t1 MTR_1g104933 40.252 318 175 7 7 318 9 317 1.01e-63 204
MS.gene23692.t1 MTR_1g111280 36.792 318 181 8 8 313 26 335 4.03e-57 188
MS.gene23692.t1 MTR_4g050140 33.951 324 193 7 5 317 2 315 7.08e-56 184
MS.gene23692.t1 MTR_7g406880 34.462 325 190 8 15 318 28 350 3.30e-54 181
MS.gene23692.t1 MTR_1g012430 36.076 316 185 9 8 317 3 307 3.52e-51 172
MS.gene23692.t1 MTR_7g107040 34.277 318 193 8 8 317 7 316 6.92e-48 164
MS.gene23692.t1 MTR_6g464120 34.211 304 180 9 21 313 29 323 2.09e-44 159
MS.gene23692.t1 MTR_3g012440 32.588 313 186 8 7 298 6 314 3.01e-43 152
MS.gene23692.t1 MTR_1g102160 34.164 281 160 7 16 279 19 291 5.48e-43 151
MS.gene23692.t1 MTR_8g035520 33.333 312 192 7 16 318 21 325 2.36e-40 144
MS.gene23692.t1 MTR_6g464510 32.353 306 184 10 24 315 31 327 5.40e-40 143
MS.gene23692.t1 MTR_8g035540 32.326 331 186 9 16 324 9 323 3.55e-39 141
MS.gene23692.t1 MTR_1g102170 33.209 268 158 7 21 276 43 301 4.75e-39 141
MS.gene23692.t1 MTR_6g065110 32.990 291 175 6 39 318 54 335 1.46e-38 139
MS.gene23692.t1 MTR_6g464320 30.743 296 182 9 35 315 39 326 2.09e-37 136
MS.gene23692.t1 MTR_6g464280 32.000 275 169 6 35 296 38 307 3.83e-37 135
MS.gene23692.t1 MTR_1g089310 33.225 307 172 11 33 321 53 344 1.65e-35 132
MS.gene23692.t1 MTR_0007s0520 30.357 336 201 11 2 318 4 325 1.89e-35 131
MS.gene23692.t1 MTR_1g089310 33.225 307 172 11 33 321 69 360 2.21e-35 132
MS.gene23692.t1 MTR_7g093950 31.949 313 174 10 33 321 53 350 2.29e-35 131
MS.gene23692.t1 MTR_1g082210 31.046 306 182 8 33 322 53 345 2.50e-35 131
MS.gene23692.t1 MTR_6g065120 30.303 297 184 7 35 318 50 336 4.17e-35 130
MS.gene23692.t1 MTR_6g065370 29.054 296 188 7 35 318 49 334 2.57e-33 125
MS.gene23692.t1 MTR_8g035500 31.496 254 162 5 35 279 33 283 6.54e-33 124
MS.gene23692.t1 MTR_6g065270 29.667 300 185 8 35 318 47 336 1.78e-32 123
MS.gene23692.t1 MTR_6g065430 30.556 288 185 6 35 317 50 327 1.99e-32 123
MS.gene23692.t1 MTR_6g065400 29.392 296 187 7 35 318 49 334 2.50e-32 123
MS.gene23692.t1 MTR_6g065340 29.452 292 176 6 35 318 60 329 5.24e-32 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23692.t1 AT3G48700 48.024 329 157 6 1 318 1 326 3.31e-104 308
MS.gene23692.t1 AT1G47480 46.250 320 160 5 1 318 1 310 2.64e-101 300
MS.gene23692.t1 AT2G03550 49.201 313 151 4 8 318 5 311 5.37e-101 300
MS.gene23692.t1 AT3G48690 47.385 325 160 5 1 318 1 321 1.77e-99 296
MS.gene23692.t1 AT1G19190 46.769 325 155 7 1 318 1 314 1.34e-96 288
MS.gene23692.t1 AT1G49660 45.860 314 167 3 7 317 4 317 2.09e-92 278
MS.gene23692.t1 AT1G49650 46.429 308 161 4 14 318 67 373 4.05e-89 271
MS.gene23692.t1 AT1G49640 44.805 308 160 6 14 317 12 313 2.02e-85 260
MS.gene23692.t1 AT1G68620 35.625 320 185 9 8 318 23 330 6.07e-54 180
MS.gene23692.t1 AT5G16080 35.738 305 179 8 8 303 28 324 2.22e-53 179
MS.gene23692.t1 AT5G06570 34.472 322 197 7 7 318 9 326 1.09e-43 153
MS.gene23692.t1 AT5G06570 34.472 322 197 7 7 318 9 326 1.09e-43 153
MS.gene23692.t1 AT5G06570 34.472 322 197 7 7 318 24 341 1.69e-43 153
MS.gene23692.t1 AT5G06570 34.472 322 197 7 7 318 24 341 1.69e-43 153
MS.gene23692.t1 AT2G45600 32.399 321 186 10 16 322 16 319 9.30e-40 142
MS.gene23692.t1 AT3G05120 32.026 306 178 8 33 321 53 345 1.56e-37 137
MS.gene23692.t1 AT5G27320 30.820 305 183 8 33 322 53 344 1.10e-36 135
MS.gene23692.t1 AT5G62180 32.215 298 175 10 35 317 38 323 6.08e-36 132
MS.gene23692.t1 AT3G63010 36.493 211 118 5 75 279 106 306 2.09e-33 126
MS.gene23692.t1 AT2G45610 31.126 302 181 11 33 318 34 324 3.66e-33 125
MS.gene23692.t1 AT5G23530 28.912 294 185 9 33 318 50 327 5.30e-30 117

Find 84 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACAAAGCTTTATGAGATTT+TGG 0.142481 7.1:-45820189 None:intergenic
ATCAACAGTTACGTAGATTT+TGG 0.160744 7.1:+45819739 MS.gene23692:CDS
TCCGGGTAAGGATAAGAATT+TGG 0.212125 7.1:+45820005 MS.gene23692:CDS
GTTGGGTTGTAAGAATGTTT+TGG 0.280166 7.1:+45820032 MS.gene23692:CDS
GGATAAGAATTTGGGGAGGT+TGG 0.307714 7.1:+45820014 MS.gene23692:CDS
TTGGATTCTACGTTTGTTGT+TGG 0.322208 7.1:-45819403 None:intergenic
CCGGGTAAGGATAAGAATTT+GGG 0.325474 7.1:+45820006 MS.gene23692:CDS
TTCTTTGCAGGAGACAGTTC+TGG 0.335239 7.1:+45819769 MS.gene23692:CDS
GGATAGAGGTTGGTATTATA+AGG 0.336514 7.1:+45820083 MS.gene23692:CDS
GTTTGTTTGTCCAACAAGTT+CGG 0.342105 7.1:+45819960 MS.gene23692:CDS
TTTGTTTGTCCAACAAGTTC+GGG 0.342906 7.1:+45819961 MS.gene23692:CDS
GATAAGAATTTGGGGAGGTT+GGG 0.344863 7.1:+45820015 MS.gene23692:CDS
TAACCTTGAAGGGATTGTTT+TGG 0.366201 7.1:+45819849 MS.gene23692:CDS
GTTTGGAAATTCATCGTTGA+TGG 0.367756 7.1:-45819482 None:intergenic
ACTGCATGCAAGATTAATAA+AGG 0.374217 7.1:-45820232 None:intergenic
TATTAATCTTGCATGCAGTT+TGG 0.381108 7.1:+45820236 MS.gene23692:CDS
CTATAGGAAGAGGATGTTCC+GGG 0.390821 7.1:-45819645 None:intergenic
GCTATAGGAAGAGGATGTTC+CGG 0.399486 7.1:-45819646 None:intergenic
ACAAAAGATAAATATTGTTC+TGG 0.404222 7.1:-45819922 None:intergenic
AAATTCATCGTTGATGGGTA+TGG 0.404848 7.1:-45819476 None:intergenic
ATTCATGGACTTCCCTCAAA+TGG 0.406576 7.1:+45819677 MS.gene23692:CDS
CATGAATCTTCGTATGCTAT+AGG 0.408799 7.1:-45819661 None:intergenic
GCTTCTCATTTGCATGGAAA+TGG 0.414423 7.1:+45819703 MS.gene23692:CDS
CGATGACCCGTTATTGAATC+CGG 0.417641 7.1:+45819987 MS.gene23692:CDS
TTATCATTGGTGAGAGATCA+AGG 0.418548 7.1:-45819315 None:intergenic
CTATAGCATACGAAGATTCA+TGG 0.419285 7.1:+45819662 MS.gene23692:CDS
CCCAAATTCTTATCCTTACC+CGG 0.420067 7.1:-45820006 None:intergenic
TTTGTTGTTGGATCAAAAGA+TGG 0.442349 7.1:-45819391 None:intergenic
TCCTTACCCGGATTCAATAA+CGG 0.444048 7.1:-45819994 None:intergenic
CCTTACCCGGATTCAATAAC+GGG 0.445272 7.1:-45819993 None:intergenic
TTGCTTGAGAAAAGTGGTTA+TGG 0.445976 7.1:+45820108 MS.gene23692:CDS
TTGTGGTATGTTGGTGAGAA+AGG 0.458779 7.1:-45819559 None:intergenic
GGGTATGGGAATGAAGATTC+TGG 0.461502 7.1:-45819461 None:intergenic
AATGATTTAATGAAGGATAG+AGG 0.462878 7.1:+45820069 MS.gene23692:CDS
GAACCAAAACAATCCCTTCA+AGG 0.467598 7.1:-45819852 None:intergenic
GTTGGAACTGAAGGGCTTCA+AGG 0.471170 7.1:+45819823 MS.gene23692:CDS
TGCAAACATTGCACATCAAA+TGG 0.473268 7.1:+45819792 MS.gene23692:CDS
TTCGTCTGAGCTTGAATCCA+TGG 0.477080 7.1:-45819287 None:intergenic
CTTCAAGGGATTAACCTTGA+AGG 0.479794 7.1:+45819838 MS.gene23692:CDS
TTGAGGTAATTGTGGTATGT+TGG 0.482197 7.1:-45819568 None:intergenic
AAGGAGTTGCTTGAGAAAAG+TGG 0.492040 7.1:+45820102 MS.gene23692:CDS
CTTGTTTACTTCCACGGCGG+TGG 0.496894 7.1:+45819520 MS.gene23692:CDS
AATGAGAAGCCACCCATTTG+AGG 0.499502 7.1:-45819690 None:intergenic
TCATCGGATCCCGAACTTGT+TGG 0.500915 7.1:-45819970 None:intergenic
CCTCTCCTTGTTTACTTCCA+CGG 0.501857 7.1:+45819514 MS.gene23692:CDS
CCCGTTATTGAATCCGGGTA+AGG 0.504978 7.1:+45819993 MS.gene23692:CDS
TTCAAGGGATTAACCTTGAA+GGG 0.506683 7.1:+45819839 MS.gene23692:CDS
GCTATTCGTGTTGGAACTGA+AGG 0.510323 7.1:+45819814 MS.gene23692:CDS
ATTTAATGAAGGATAGAGGT+TGG 0.510939 7.1:+45820073 MS.gene23692:CDS
TCTTCGTATGCTATAGGAAG+AGG 0.511339 7.1:-45819655 None:intergenic
TTCATGGACTTCCCTCAAAT+GGG 0.514492 7.1:+45819678 MS.gene23692:CDS
AATTCATCGTTGATGGGTAT+GGG 0.527547 7.1:-45819475 None:intergenic
ATGAGAAGCCACCCATTTGA+GGG 0.529157 7.1:-45819689 None:intergenic
CAATGGTGTTGAGGTAATTG+TGG 0.531357 7.1:-45819576 None:intergenic
TTGGAACTGAAGGGCTTCAA+GGG 0.535779 7.1:+45819824 MS.gene23692:CDS
TTTGGAAATTCATCGTTGAT+GGG 0.536977 7.1:-45819481 None:intergenic
CATCAAATGGCTATTCGTGT+TGG 0.537039 7.1:+45819805 MS.gene23692:CDS
ATGGAAATGGTTGTGATGAA+TGG 0.552637 7.1:+45819716 MS.gene23692:CDS
GTTGATGTGATTGAGACAAA+AGG 0.552670 7.1:+45820138 MS.gene23692:CDS
TGGGTGGCTTCTCATTTGCA+TGG 0.555925 7.1:+45819697 MS.gene23692:CDS
CTTGAGAAACAATGGTGTTG+AGG 0.555979 7.1:-45819585 None:intergenic
TGCTGAGAATGATTTAATGA+AGG 0.559812 7.1:+45820062 MS.gene23692:CDS
TACATTAGCTTGAGAAACAA+TGG 0.567689 7.1:-45819593 None:intergenic
CGGATTCAATAACGGGTCAT+CGG 0.578183 7.1:-45819986 None:intergenic
GATGACCCGTTATTGAATCC+GGG 0.583489 7.1:+45819988 MS.gene23692:CDS
CACCGCCGTGGAAGTAAACA+AGG 0.586579 7.1:-45819519 None:intergenic
ATGGACTTCCCTCAAATGGG+TGG 0.592925 7.1:+45819681 MS.gene23692:CDS
GGTCACATAGAAAGACTCTC+AGG 0.595927 7.1:+45819352 MS.gene23692:CDS
TCGTCTGAGCTTGAATCCAT+GGG 0.599476 7.1:-45819286 None:intergenic
CTATTCGTGTTGGAACTGAA+GGG 0.601762 7.1:+45819815 MS.gene23692:CDS
ATGATAAAAGTCTACAAAGA+CGG 0.607569 7.1:+45819331 MS.gene23692:CDS
GTTGTTGGATCAAAAGATGG+AGG 0.615289 7.1:-45819388 None:intergenic
CCGTGGAAGTAAACAAGGAG+AGG 0.616625 7.1:-45819514 None:intergenic
CGTGGAAGTAAACAAGGAGA+GGG 0.617294 7.1:-45819513 None:intergenic
CTCCTTGTTTACTTCCACGG+CGG 0.620496 7.1:+45819517 MS.gene23692:CDS
AAAAGATGGAGGTACAATGT+CGG 0.623683 7.1:-45819377 None:intergenic
AGTTGATTACAAAAGAGCCC+CGG 0.625897 7.1:+45819627 MS.gene23692:CDS
CTTGAGAAAAGTGGTTATGG+TGG 0.628747 7.1:+45820111 MS.gene23692:CDS
TGTGGAAAGAGTTGGATCTG+AGG 0.629593 7.1:+45819891 MS.gene23692:CDS
GTGATTGAGACAAAAGGTGA+AGG 0.667699 7.1:+45820144 MS.gene23692:CDS
CTACGCAGAAACCACCGCCG+TGG 0.693149 7.1:-45819531 None:intergenic
TATAGGAAGAGGATGTTCCG+GGG 0.736742 7.1:-45819644 None:intergenic
GTAAGGATAAGAATTTGGGG+AGG 0.741992 7.1:+45820010 MS.gene23692:CDS
CGGGTAAGGATAAGAATTTG+GGG 0.748700 7.1:+45820007 MS.gene23692:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAAGATAAATATTGTTC+TGG - chr7.1:45819925-45819944 None:intergenic 20.0%
!!! AGAACAATATTTATCTTTTG+TGG + chr7.1:45819924-45819943 MS.gene23692:CDS 20.0%
!!! TATCTTTTGTGGATAATTTA+TGG + chr7.1:45819935-45819954 MS.gene23692:CDS 20.0%
! AATGATTTAATGAAGGATAG+AGG + chr7.1:45820069-45820088 MS.gene23692:CDS 25.0%
! ATGATAAAAGTCTACAAAGA+CGG + chr7.1:45819331-45819350 MS.gene23692:CDS 25.0%
!! TCTTTGTAGACTTTTATCAT+TGG - chr7.1:45819331-45819350 None:intergenic 25.0%
ACTGCATGCAAGATTAATAA+AGG - chr7.1:45820235-45820254 None:intergenic 30.0%
ATTTAATGAAGGATAGAGGT+TGG + chr7.1:45820073-45820092 MS.gene23692:CDS 30.0%
TATTAATCTTGCATGCAGTT+TGG + chr7.1:45820236-45820255 MS.gene23692:CDS 30.0%
TGCTGAGAATGATTTAATGA+AGG + chr7.1:45820062-45820081 MS.gene23692:CDS 30.0%
TTTGGAAATTCATCGTTGAT+GGG - chr7.1:45819484-45819503 None:intergenic 30.0%
! ATCAACAGTTACGTAGATTT+TGG + chr7.1:45819739-45819758 MS.gene23692:CDS 30.0%
! CTTTTGTGGATAATTTATGG+CGG + chr7.1:45819938-45819957 MS.gene23692:CDS 30.0%
! TACATTAGCTTGAGAAACAA+TGG - chr7.1:45819596-45819615 None:intergenic 30.0%
! TTTGGAAAAGTTTTCTTTGC+AGG + chr7.1:45819757-45819776 MS.gene23692:CDS 30.0%
!! GACAAAGCTTTATGAGATTT+TGG - chr7.1:45820192-45820211 None:intergenic 30.0%
!! TTTGGTTCATGCATTCTTTT+GGG + chr7.1:45819867-45819886 MS.gene23692:CDS 30.0%
!! TTTGTTGTTGGATCAAAAGA+TGG - chr7.1:45819394-45819413 None:intergenic 30.0%
!!! TTTTGAGATGAGAATGTCTT+TGG - chr7.1:45819425-45819444 None:intergenic 30.0%
!!! TTTTGGTTCATGCATTCTTT+TGG + chr7.1:45819866-45819885 MS.gene23692:CDS 30.0%
ATGGAAATGGTTGTGATGAA+TGG + chr7.1:45819716-45819735 MS.gene23692:CDS 35.0%
CATGAATCTTCGTATGCTAT+AGG - chr7.1:45819664-45819683 None:intergenic 35.0%
CTATAGCATACGAAGATTCA+TGG + chr7.1:45819662-45819681 MS.gene23692:CDS 35.0%
GTTGATGTGATTGAGACAAA+AGG + chr7.1:45820138-45820157 MS.gene23692:CDS 35.0%
GTTTGGAAATTCATCGTTGA+TGG - chr7.1:45819485-45819504 None:intergenic 35.0%
GTTTGTTTGTCCAACAAGTT+CGG + chr7.1:45819960-45819979 MS.gene23692:CDS 35.0%
TGCAAACATTGCACATCAAA+TGG + chr7.1:45819792-45819811 MS.gene23692:CDS 35.0%
TTATCATTGGTGAGAGATCA+AGG - chr7.1:45819318-45819337 None:intergenic 35.0%
TTCAAGGGATTAACCTTGAA+GGG + chr7.1:45819839-45819858 MS.gene23692:CDS 35.0%
TTGAGGTAATTGTGGTATGT+TGG - chr7.1:45819571-45819590 None:intergenic 35.0%
TTGCTTGAGAAAAGTGGTTA+TGG + chr7.1:45820108-45820127 MS.gene23692:CDS 35.0%
TTTGTTTGTCCAACAAGTTC+GGG + chr7.1:45819961-45819980 MS.gene23692:CDS 35.0%
! AAAAGATGGAGGTACAATGT+CGG - chr7.1:45819380-45819399 None:intergenic 35.0%
! AAATTCATCGTTGATGGGTA+TGG - chr7.1:45819479-45819498 None:intergenic 35.0%
! AATTCATCGTTGATGGGTAT+GGG - chr7.1:45819478-45819497 None:intergenic 35.0%
! TAACCTTGAAGGGATTGTTT+TGG + chr7.1:45819849-45819868 MS.gene23692:CDS 35.0%
! TTGGTTCATGCATTCTTTTG+GGG + chr7.1:45819868-45819887 MS.gene23692:CDS 35.0%
!! GGATAGAGGTTGGTATTATA+AGG + chr7.1:45820083-45820102 MS.gene23692:CDS 35.0%
!! GTTGGGTTGTAAGAATGTTT+TGG + chr7.1:45820032-45820051 MS.gene23692:CDS 35.0%
!! TTGGATTCTACGTTTGTTGT+TGG - chr7.1:45819406-45819425 None:intergenic 35.0%
AAGGAGTTGCTTGAGAAAAG+TGG + chr7.1:45820102-45820121 MS.gene23692:CDS 40.0%
AGTTGATTACAAAAGAGCCC+CGG + chr7.1:45819627-45819646 MS.gene23692:CDS 40.0%
ATTCATGGACTTCCCTCAAA+TGG + chr7.1:45819677-45819696 MS.gene23692:CDS 40.0%
CATCAAATGGCTATTCGTGT+TGG + chr7.1:45819805-45819824 MS.gene23692:CDS 40.0%
CCCAAATTCTTATCCTTACC+CGG - chr7.1:45820009-45820028 None:intergenic 40.0%
CCGGGTAAGGATAAGAATTT+GGG + chr7.1:45820006-45820025 MS.gene23692:CDS 40.0%
CGGGTAAGGATAAGAATTTG+GGG + chr7.1:45820007-45820026 MS.gene23692:CDS 40.0%
CTATTCGTGTTGGAACTGAA+GGG + chr7.1:45819815-45819834 MS.gene23692:CDS 40.0%
CTTCAAGGGATTAACCTTGA+AGG + chr7.1:45819838-45819857 MS.gene23692:CDS 40.0%
CTTGAGAAAAGTGGTTATGG+TGG + chr7.1:45820111-45820130 MS.gene23692:CDS 40.0%
GAACCAAAACAATCCCTTCA+AGG - chr7.1:45819855-45819874 None:intergenic 40.0%
GATAAGAATTTGGGGAGGTT+GGG + chr7.1:45820015-45820034 MS.gene23692:CDS 40.0%
GCTTCTCATTTGCATGGAAA+TGG + chr7.1:45819703-45819722 MS.gene23692:CDS 40.0%
GTAAGGATAAGAATTTGGGG+AGG + chr7.1:45820010-45820029 MS.gene23692:CDS 40.0%
GTGATTGAGACAAAAGGTGA+AGG + chr7.1:45820144-45820163 MS.gene23692:CDS 40.0%
GTTGTTGGATCAAAAGATGG+AGG - chr7.1:45819391-45819410 None:intergenic 40.0%
TCCGGGTAAGGATAAGAATT+TGG + chr7.1:45820005-45820024 MS.gene23692:CDS 40.0%
TCCTTACCCGGATTCAATAA+CGG - chr7.1:45819997-45820016 None:intergenic 40.0%
TCTTCGTATGCTATAGGAAG+AGG - chr7.1:45819658-45819677 None:intergenic 40.0%
TTCATGGACTTCCCTCAAAT+GGG + chr7.1:45819678-45819697 MS.gene23692:CDS 40.0%
! AAACAAGGAGAGGGAGTTTT+TGG - chr7.1:45819507-45819526 None:intergenic 40.0%
! CAATGGTGTTGAGGTAATTG+TGG - chr7.1:45819579-45819598 None:intergenic 40.0%
! CTTGAGAAACAATGGTGTTG+AGG - chr7.1:45819588-45819607 None:intergenic 40.0%
! TTGTGGTATGTTGGTGAGAA+AGG - chr7.1:45819562-45819581 None:intergenic 40.0%
AATGAGAAGCCACCCATTTG+AGG - chr7.1:45819693-45819712 None:intergenic 45.0%
ATGAGAAGCCACCCATTTGA+GGG - chr7.1:45819692-45819711 None:intergenic 45.0%
CCTTACCCGGATTCAATAAC+GGG - chr7.1:45819996-45820015 None:intergenic 45.0%
CGATGACCCGTTATTGAATC+CGG + chr7.1:45819987-45820006 MS.gene23692:CDS 45.0%
CGTGGAAGTAAACAAGGAGA+GGG - chr7.1:45819516-45819535 None:intergenic 45.0%
CTATAGGAAGAGGATGTTCC+GGG - chr7.1:45819648-45819667 None:intergenic 45.0%
GATGACCCGTTATTGAATCC+GGG + chr7.1:45819988-45820007 MS.gene23692:CDS 45.0%
GCTATAGGAAGAGGATGTTC+CGG - chr7.1:45819649-45819668 None:intergenic 45.0%
GCTATTCGTGTTGGAACTGA+AGG + chr7.1:45819814-45819833 MS.gene23692:CDS 45.0%
GGATAAGAATTTGGGGAGGT+TGG + chr7.1:45820014-45820033 MS.gene23692:CDS 45.0%
GGGTATGGGAATGAAGATTC+TGG - chr7.1:45819464-45819483 None:intergenic 45.0%
GGTCACATAGAAAGACTCTC+AGG + chr7.1:45819352-45819371 MS.gene23692:CDS 45.0%
TATAGGAAGAGGATGTTCCG+GGG - chr7.1:45819647-45819666 None:intergenic 45.0%
TGTGGAAAGAGTTGGATCTG+AGG + chr7.1:45819891-45819910 MS.gene23692:CDS 45.0%
TTCTTTGCAGGAGACAGTTC+TGG + chr7.1:45819769-45819788 MS.gene23692:CDS 45.0%
TTGGAACTGAAGGGCTTCAA+GGG + chr7.1:45819824-45819843 MS.gene23692:CDS 45.0%
! CCTCTCCTTGTTTACTTCCA+CGG + chr7.1:45819514-45819533 MS.gene23692:CDS 45.0%
!! CGGATTCAATAACGGGTCAT+CGG - chr7.1:45819989-45820008 None:intergenic 45.0%
!!! AGGAGAGGGAGTTTTTGGTT+TGG - chr7.1:45819502-45819521 None:intergenic 45.0%
!!! TCATGCATTCTTTTGGGGTG+TGG + chr7.1:45819873-45819892 MS.gene23692:CDS 45.0%
!!! TTTTGGGGTGTGGAAAGAGT+TGG + chr7.1:45819883-45819902 MS.gene23692:CDS 45.0%
ATGGACTTCCCTCAAATGGG+TGG + chr7.1:45819681-45819700 MS.gene23692:CDS 50.0%
CCCGTTATTGAATCCGGGTA+AGG + chr7.1:45819993-45820012 MS.gene23692:CDS 50.0%
CCGTGGAAGTAAACAAGGAG+AGG - chr7.1:45819517-45819536 None:intergenic 50.0%
GTTGGAACTGAAGGGCTTCA+AGG + chr7.1:45819823-45819842 MS.gene23692:CDS 50.0%
TCATCGGATCCCGAACTTGT+TGG - chr7.1:45819973-45819992 None:intergenic 50.0%
TGGGTGGCTTCTCATTTGCA+TGG + chr7.1:45819697-45819716 MS.gene23692:CDS 50.0%
! CTCCTTGTTTACTTCCACGG+CGG + chr7.1:45819517-45819536 MS.gene23692:CDS 50.0%
CACCGCCGTGGAAGTAAACA+AGG - chr7.1:45819522-45819541 None:intergenic 55.0%
CTTGTTTACTTCCACGGCGG+TGG + chr7.1:45819520-45819539 MS.gene23692:CDS 55.0%
CTACGCAGAAACCACCGCCG+TGG - chr7.1:45819534-45819553 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 45819289 45820263 45819289 ID=MS.gene23692
chr7.1 mRNA 45819289 45820263 45819289 ID=MS.gene23692.t1;Parent=MS.gene23692
chr7.1 exon 45819289 45820263 45819289 ID=MS.gene23692.t1.exon1;Parent=MS.gene23692.t1
chr7.1 CDS 45819289 45820263 45819289 ID=cds.MS.gene23692.t1;Parent=MS.gene23692.t1
Gene Sequence

>MS.gene23692

ATGGATTCAAGCTCAGACGAAGTAGTCCTTGATCTCTCACCAATGATAAAAGTCTACAAAGACGGTCACATAGAAAGACTCTCAGGATCCGACATTGTACCTCCATCTTTTGATCCAACAACAAACGTAGAATCCAAAGACATTCTCATCTCAAAAGACAAAAACATATCAGCCAGAATCTTCATTCCCATACCCATCAACGATGAATTTCCAAACCAAAAACTCCCTCTCCTTGTTTACTTCCACGGCGGTGGTTTCTGCGTAGAAACACCTTTCTCACCAACATACCACAATTACCTCAACACCATTGTTTCTCAAGCTAATGTAATCGCTGTTTCAGTTGATTACAAAAGAGCCCCGGAACATCCTCTTCCTATAGCATACGAAGATTCATGGACTTCCCTCAAATGGGTGGCTTCTCATTTGCATGGAAATGGTTGTGATGAATGGATCAACAGTTACGTAGATTTTGGAAAAGTTTTCTTTGCAGGAGACAGTTCTGGTGCAAACATTGCACATCAAATGGCTATTCGTGTTGGAACTGAAGGGCTTCAAGGGATTAACCTTGAAGGGATTGTTTTGGTTCATGCATTCTTTTGGGGTGTGGAAAGAGTTGGATCTGAGGCTGAGAAACCAGAACAATATTTATCTTTTGTGGATAATTTATGGCGGTTTGTTTGTCCAACAAGTTCGGGATCCGATGACCCGTTATTGAATCCGGGTAAGGATAAGAATTTGGGGAGGTTGGGTTGTAAGAATGTTTTGGTTTGTGTTGCTGAGAATGATTTAATGAAGGATAGAGGTTGGTATTATAAGGAGTTGCTTGAGAAAAGTGGTTATGGTGGTATTGTTGATGTGATTGAGACAAAAGGTGAAGGACATGTTTTTCATCTCTTTAATCCAAAATCTCATAAAGCTTTGTCTTTGCTTAAGCAAATTGTTTCCTTTATTAATCTTGCATGCAGTTTGGCATAG
Protein sequence

>MS.gene23692.t1

MDSSSDEVVLDLSPMIKVYKDGHIERLSGSDIVPPSFDPTTNVESKDILISKDKNISARIFIPIPINDEFPNQKLPLLVYFHGGGFCVETPFSPTYHNYLNTIVSQANVIAVSVDYKRAPEHPLPIAYEDSWTSLKWVASHLHGNGCDEWINSYVDFGKVFFAGDSSGANIAHQMAIRVGTEGLQGINLEGIVLVHAFFWGVERVGSEAEKPEQYLSFVDNLWRFVCPTSSGSDDPLLNPGKDKNLGRLGCKNVLVCVAENDLMKDRGWYYKELLEKSGYGGIVDVIETKGEGHVFHLFNPKSHKALSLLKQIVSFINLACSLA