AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26528

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26528.t1 MTR_4g086510 96.885 321 10 0 1 321 1 321 0.0 643
MS.gene26528.t1 MTR_7g056207 85.759 316 45 0 2 317 34 349 0.0 568
MS.gene26528.t1 MTR_4g086480 64.907 322 106 3 1 318 1 319 2.12e-161 453
MS.gene26528.t1 MTR_4g086470 62.539 323 115 3 1 320 1 320 1.35e-145 413
MS.gene26528.t1 MTR_5g005850 45.015 331 163 9 1 317 3 328 5.04e-95 285
MS.gene26528.t1 MTR_4g086540 45.253 316 150 4 2 317 12 304 9.65e-94 281
MS.gene26528.t1 MTR_3g101420 43.810 315 163 6 9 317 8 314 2.74e-93 280
MS.gene26528.t1 MTR_1g105020 44.172 326 169 8 1 317 1 322 5.56e-91 274
MS.gene26528.t1 MTR_3g450680 42.202 327 175 7 2 318 10 332 5.61e-83 254
MS.gene26528.t1 MTR_8g040860 40.752 319 178 7 7 318 15 329 1.27e-76 238
MS.gene26528.t1 MTR_5g005920 38.415 328 191 8 2 319 6 332 9.03e-76 236
MS.gene26528.t1 MTR_5g005900 41.337 329 178 8 1 317 1 326 2.52e-75 234
MS.gene26528.t1 MTR_1g104930 41.121 321 176 7 4 317 8 322 7.27e-71 223
MS.gene26528.t1 MTR_7g051020 40.187 321 182 7 4 317 8 325 1.90e-69 219
MS.gene26528.t1 MTR_1g104933 40.506 316 173 7 8 317 10 316 4.32e-62 200
MS.gene26528.t1 MTR_1g111280 40.065 307 160 9 8 300 26 322 1.34e-60 197
MS.gene26528.t1 MTR_1g012430 39.117 317 176 9 8 318 3 308 1.74e-57 188
MS.gene26528.t1 MTR_4g050140 34.462 325 192 8 5 318 2 316 2.04e-55 183
MS.gene26528.t1 MTR_7g406880 36.928 306 167 9 15 299 28 328 3.04e-55 183
MS.gene26528.t1 MTR_7g107040 33.125 320 200 7 8 320 7 319 1.33e-46 160
MS.gene26528.t1 MTR_1g102160 35.231 281 157 7 16 279 19 291 5.12e-45 156
MS.gene26528.t1 MTR_8g035520 34.936 312 185 8 16 317 21 324 1.25e-43 152
MS.gene26528.t1 MTR_6g464120 36.585 287 158 10 21 294 29 304 1.43e-43 157
MS.gene26528.t1 MTR_8g035540 34.494 316 185 9 16 317 9 316 1.13e-42 150
MS.gene26528.t1 MTR_6g464280 34.831 267 152 7 35 288 38 295 1.59e-42 149
MS.gene26528.t1 MTR_6g464510 34.416 308 176 11 24 317 31 326 7.16e-42 148
MS.gene26528.t1 MTR_1g102170 36.059 269 149 9 21 276 43 301 2.45e-41 147
MS.gene26528.t1 MTR_6g464320 31.650 297 179 9 35 317 39 325 3.73e-41 146
MS.gene26528.t1 MTR_6g065110 35.274 292 169 8 39 319 54 336 5.14e-41 146
MS.gene26528.t1 MTR_6g065120 33.784 296 173 8 35 317 50 335 4.63e-40 144
MS.gene26528.t1 MTR_0007s0520 30.746 335 198 11 1 320 12 327 2.63e-39 141
MS.gene26528.t1 MTR_3g012440 30.029 343 208 9 4 318 3 341 3.85e-39 141
MS.gene26528.t1 MTR_6g065340 31.959 291 168 6 35 317 60 328 2.85e-36 133
MS.gene26528.t1 MTR_1g089310 32.704 318 178 11 21 317 38 340 4.50e-36 133
MS.gene26528.t1 MTR_1g089310 32.704 318 178 11 21 317 54 356 4.75e-36 133
MS.gene26528.t1 MTR_6g065430 31.270 307 191 8 21 317 31 327 7.30e-36 132
MS.gene26528.t1 MTR_6g065270 31.208 298 181 7 35 317 47 335 1.12e-35 132
MS.gene26528.t1 MTR_7g093950 33.010 309 168 11 33 317 53 346 2.65e-35 131
MS.gene26528.t1 MTR_8g035500 31.890 254 161 5 35 279 33 283 7.96e-35 129
MS.gene26528.t1 MTR_6g065370 31.208 298 177 8 35 317 49 333 1.20e-34 129
MS.gene26528.t1 MTR_6g065400 30.612 294 184 6 35 317 49 333 3.67e-34 128
MS.gene26528.t1 MTR_1g082210 30.233 301 181 8 33 317 53 340 1.42e-33 126
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26528.t1 AT3G48700 50.152 329 150 6 1 318 1 326 8.62e-110 322
MS.gene26528.t1 AT3G48690 50.920 326 147 7 1 318 1 321 1.51e-107 317
MS.gene26528.t1 AT2G03550 50.000 312 148 4 8 317 5 310 3.15e-107 315
MS.gene26528.t1 AT1G19190 49.379 322 151 7 1 318 1 314 3.47e-103 305
MS.gene26528.t1 AT1G47480 46.729 321 159 6 1 319 1 311 7.17e-102 301
MS.gene26528.t1 AT1G49660 46.349 315 166 3 6 317 3 317 1.20e-94 283
MS.gene26528.t1 AT1G49650 47.231 307 158 4 14 317 67 372 1.45e-91 278
MS.gene26528.t1 AT1G49640 47.078 308 153 6 14 317 12 313 6.99e-89 269
MS.gene26528.t1 AT1G68620 36.562 320 184 8 8 319 23 331 2.00e-56 186
MS.gene26528.t1 AT5G16080 36.335 322 185 10 8 317 28 341 2.26e-55 184
MS.gene26528.t1 AT2G45600 32.492 317 184 9 16 318 16 316 8.32e-41 145
MS.gene26528.t1 AT5G06570 32.710 321 202 7 7 317 9 325 1.93e-38 139
MS.gene26528.t1 AT5G06570 32.710 321 202 7 7 317 9 325 1.93e-38 139
MS.gene26528.t1 AT5G06570 32.710 321 202 7 7 317 24 340 2.25e-38 139
MS.gene26528.t1 AT5G06570 32.710 321 202 7 7 317 24 340 2.25e-38 139
MS.gene26528.t1 AT5G62180 31.310 313 189 8 21 317 21 323 4.09e-38 138
MS.gene26528.t1 AT2G45610 31.847 314 195 9 16 317 17 323 2.15e-34 128
MS.gene26528.t1 AT3G05120 29.968 317 189 9 21 317 38 341 2.49e-34 128
MS.gene26528.t1 AT5G23530 31.741 293 176 10 33 317 50 326 3.07e-34 128
MS.gene26528.t1 AT5G27320 30.667 300 180 9 33 317 53 339 5.61e-34 127
MS.gene26528.t1 AT3G63010 33.333 249 147 7 75 317 106 341 5.93e-33 125

Find 85 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAACCGTTATGCAGATTT+TGG 0.137747 4.1:+23327721 MS.gene26528:CDS
TATCTTTGGCAGATAATTTA+TGG 0.167740 4.1:+23327917 MS.gene26528:CDS
TCCTGGAAAGGATAAGAATT+TGG 0.204845 4.1:+23327987 MS.gene26528:CDS
CCCAAATTCTTATCCTTTCC+AGG 0.230563 4.1:-23327988 None:intergenic
GAAGTAGCGTTATCACAATT+TGG 0.238391 4.1:-23328171 None:intergenic
AAGGAGTTGCTTGAGAAAAT+TGG 0.262640 4.1:+23328084 MS.gene26528:CDS
TTTCGAGATGAGAATGTCTT+TGG 0.280568 4.1:-23327404 None:intergenic
GAAATCTGAACATTTATCTT+TGG 0.318877 4.1:+23327903 MS.gene26528:CDS
TTGGATTCTACGTTTGTTGT+TGG 0.322208 4.1:-23327385 None:intergenic
CCTGGAAAGGATAAGAATTT+GGG 0.324352 4.1:+23327988 MS.gene26528:CDS
AGATTCTGACGGATATGTTT+TGG 0.326819 4.1:-23327429 None:intergenic
GGACAGAGGTTGGTATTATA+AGG 0.329561 4.1:+23328065 MS.gene26528:CDS
GGATAAGAATTTGGGGAGGT+TGG 0.340905 4.1:+23327996 MS.gene26528:CDS
CTATTGCATACGAAGATTCA+TGG 0.342324 4.1:+23327644 MS.gene26528:CDS
GTTGGGTTGTAAGAGAGTTT+TGG 0.343853 4.1:+23328014 MS.gene26528:CDS
TTTGTTTGTCCAACAAGTTC+GGG 0.347347 4.1:+23327943 MS.gene26528:CDS
GCAATAGGAAGAGGATGTTC+TGG 0.347644 4.1:-23327628 None:intergenic
AATTGATCGTTGTTGGGTTT+GGG 0.349087 4.1:-23327457 None:intergenic
TTTGGAAAAGTGTTCTTTGC+AGG 0.354718 4.1:+23327739 MS.gene26528:CDS
TAACCTTGAAGGGATTGTTT+TGG 0.366201 4.1:+23327831 MS.gene26528:CDS
AAATTGATCGTTGTTGGGTT+TGG 0.376453 4.1:-23327458 None:intergenic
GATAAGAATTTGGGGAGGTT+GGG 0.378686 4.1:+23327997 MS.gene26528:CDS
GTTTGTTTGTCCAACAAGTT+CGG 0.387947 4.1:+23327942 MS.gene26528:CDS
TTAACCACTATGCTTAATAA+AGG 0.388861 4.1:-23328214 None:intergenic
GTTTGGAAATTGATCGTTGT+TGG 0.395971 4.1:-23327464 None:intergenic
ATTCATGGACTTCCCTCAAA+TGG 0.399432 4.1:+23327659 MS.gene26528:CDS
GTTTCTCATTTGCATGGAAA+TGG 0.400772 4.1:+23327685 MS.gene26528:CDS
CATGAATCTTCGTATGCAAT+AGG 0.401174 4.1:-23327643 None:intergenic
TTGCTTGAGAAAATTGGTTA+TGG 0.425920 4.1:+23328090 MS.gene26528:CDS
TAATCATGGGTGAGAGATCA+AGG 0.441310 4.1:-23327297 None:intergenic
TTTGTTGTTGGATCAAAAGA+TGG 0.442349 4.1:-23327373 None:intergenic
CCTCTCCTTGTTTACTTCCA+CGG 0.464719 4.1:+23327496 MS.gene26528:CDS
GAACCAAAACAATCCCTTCA+AGG 0.467598 4.1:-23327834 None:intergenic
CAATAGGAAGAGGATGTTCT+GGG 0.468823 4.1:-23327627 None:intergenic
TCGTTAGAGCTTGAATCCAT+TGG 0.469914 4.1:-23327268 None:intergenic
GTTGGAACTGAAGGGCTTCA+AGG 0.471170 4.1:+23327805 MS.gene26528:CDS
TGTTGAAAGGGTTGGATCTG+AGG 0.476216 4.1:+23327873 MS.gene26528:CDS
CTTCAAGGGATTAACCTTGA+AGG 0.479794 4.1:+23327820 MS.gene26528:CDS
TTCTTTGCAGGAGACAGTGC+TGG 0.484895 4.1:+23327751 MS.gene26528:CDS
AATGAGAAACGACCCATTTG+AGG 0.485439 4.1:-23327672 None:intergenic
GCTTCCTTTATTAAGCATAG+TGG 0.485822 4.1:+23328210 MS.gene26528:CDS
CTTGTTTACTTCCACGGTGG+TGG 0.494455 4.1:+23327502 MS.gene26528:CDS
TTGTGGTATGGTGGTGAGAA+AGG 0.497082 4.1:-23327541 None:intergenic
TCATCGGATCCCGAACTTGT+TGG 0.500915 4.1:-23327952 None:intergenic
TTTGGAAATTGATCGTTGTT+GGG 0.501578 4.1:-23327463 None:intergenic
GGTCACATAGAAAGACTCAT+AGG 0.504720 4.1:+23327334 MS.gene26528:CDS
TTCAAGGGATTAACCTTGAA+GGG 0.506683 4.1:+23327821 MS.gene26528:CDS
CCTTTCCAGGATTCAAAAGC+GGG 0.506964 4.1:-23327975 None:intergenic
GCTATTCGTGTTGGAACTGA+AGG 0.508303 4.1:+23327796 MS.gene26528:CDS
TGCTGAGAATGATTCGTTGA+AGG 0.512607 4.1:+23328044 MS.gene26528:CDS
ATGATTAAAATCTACAAAGA+TGG 0.516689 4.1:+23327313 MS.gene26528:CDS
TTCATGGACTTCCCTCAAAT+GGG 0.516932 4.1:+23327660 MS.gene26528:CDS
CTTTAGAAACAATGGTGTTG+AGG 0.518105 4.1:-23327567 None:intergenic
CTTGAGAAAATTGGTTATGG+TGG 0.520361 4.1:+23328093 MS.gene26528:CDS
CAATGGTGTTGAGGAAATTG+TGG 0.524537 4.1:-23327558 None:intergenic
TCTTCGTATGCAATAGGAAG+AGG 0.528217 4.1:-23327637 None:intergenic
AGGATTCAAAAGCGGGTCAT+CGG 0.531320 4.1:-23327968 None:intergenic
ATTCGTTGAAGGACAGAGGT+TGG 0.532870 4.1:+23328055 MS.gene26528:CDS
TTGGAACTGAAGGGCTTCAA+GGG 0.535779 4.1:+23327806 MS.gene26528:CDS
TGGGTCGTTTCTCATTTGCA+TGG 0.537774 4.1:+23327679 MS.gene26528:CDS
ATGAGAAACGACCCATTTGA+GGG 0.549483 4.1:-23327671 None:intergenic
CACATTAGCTTTAGAAACAA+TGG 0.549484 4.1:-23327575 None:intergenic
ATGGAAATGGTTCTGATGAA+TGG 0.551575 4.1:+23327698 MS.gene26528:CDS
AAAAGATGGAGGTACGATGT+TGG 0.553050 4.1:-23327359 None:intergenic
CATCACATGGCTATTCGTGT+TGG 0.555895 4.1:+23327787 MS.gene26528:CDS
AATTGGTTATGGTGGTGTTG+TGG 0.565299 4.1:+23328101 MS.gene26528:CDS
AGCAAACATTGCACATCACA+TGG 0.575653 4.1:+23327774 MS.gene26528:CDS
CTCCTTGTTTACTTCCACGG+TGG 0.586065 4.1:+23327499 MS.gene26528:CDS
GTGGAAGTGATTGAGACAAA+AGG 0.600674 4.1:+23328120 MS.gene26528:CDS
CTATTCGTGTTGGAACTGAA+GGG 0.601762 4.1:+23327797 MS.gene26528:CDS
CACCACCGTGGAAGTAAACA+AGG 0.602557 4.1:-23327501 None:intergenic
TCCTTTCCAGGATTCAAAAG+CGG 0.605233 4.1:-23327976 None:intergenic
TTGAGGAAATTGTGGTATGG+TGG 0.607405 4.1:-23327550 None:intergenic
GTTGTTGGATCAAAAGATGG+AGG 0.615289 4.1:-23327370 None:intergenic
CCGTGGAAGTAAACAAGGAG+AGG 0.629043 4.1:-23327496 None:intergenic
CGTGGAAGTAAACAAGGAGA+GGG 0.633922 4.1:-23327495 None:intergenic
TTTGGGAATGAAGATTCTGA+CGG 0.635421 4.1:-23327440 None:intergenic
AATGATTCGTTGAAGGACAG+AGG 0.637660 4.1:+23328051 MS.gene26528:CDS
CTTTGGCAGATAATTTATGG+AGG 0.639376 4.1:+23327920 MS.gene26528:CDS
GTGATTGAGACAAAAGGTGA+AGG 0.640528 4.1:+23328126 MS.gene26528:CDS
GTGTTGAGGAAATTGTGGTA+TGG 0.652807 4.1:-23327553 None:intergenic
CTGGAAAGGATAAGAATTTG+GGG 0.670967 4.1:+23327989 MS.gene26528:CDS
GAAAGGATAAGAATTTGGGG+AGG 0.711471 4.1:+23327992 MS.gene26528:CDS
AATAGGAAGAGGATGTTCTG+GGG 0.734302 4.1:-23327626 None:intergenic
CTACGCAGAAACCACCACCG+TGG 0.793795 4.1:-23327513 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGATTAAAATCTACAAAGA+TGG + chr4.1:23327313-23327332 MS.gene26528:CDS 20.0%
!!! ATCTTTGTAGATTTTAATCA+TGG - chr4.1:23327314-23327333 None:intergenic 20.0%
!!! TCTTTGTAGATTTTAATCAT+GGG - chr4.1:23327313-23327332 None:intergenic 20.0%
! GAAATCTGAACATTTATCTT+TGG + chr4.1:23327903-23327922 MS.gene26528:CDS 25.0%
! TATCTTTGGCAGATAATTTA+TGG + chr4.1:23327917-23327936 MS.gene26528:CDS 25.0%
! TTAACCACTATGCTTAATAA+AGG - chr4.1:23328217-23328236 None:intergenic 25.0%
!!! TTTGGTTCATACATTCTTTT+GGG + chr4.1:23327849-23327868 MS.gene26528:CDS 25.0%
!!! TTTTGGTTCATACATTCTTT+TGG + chr4.1:23327848-23327867 MS.gene26528:CDS 25.0%
TTGCTTGAGAAAATTGGTTA+TGG + chr4.1:23328090-23328109 MS.gene26528:CDS 30.0%
TTTGGAAATTGATCGTTGTT+GGG - chr4.1:23327466-23327485 None:intergenic 30.0%
! CTTTTCCAAAATCTGCATAA+CGG - chr4.1:23327729-23327748 None:intergenic 30.0%
! TTGGTTCATACATTCTTTTG+GGG + chr4.1:23327850-23327869 MS.gene26528:CDS 30.0%
!! CACATTAGCTTTAGAAACAA+TGG - chr4.1:23327578-23327597 None:intergenic 30.0%
!! TTTGTTGTTGGATCAAAAGA+TGG - chr4.1:23327376-23327395 None:intergenic 30.0%
AAATTGATCGTTGTTGGGTT+TGG - chr4.1:23327461-23327480 None:intergenic 35.0%
AAGGAGTTGCTTGAGAAAAT+TGG + chr4.1:23328084-23328103 MS.gene26528:CDS 35.0%
AATTGATCGTTGTTGGGTTT+GGG - chr4.1:23327460-23327479 None:intergenic 35.0%
CATGAATCTTCGTATGCAAT+AGG - chr4.1:23327646-23327665 None:intergenic 35.0%
CCTGGAAAGGATAAGAATTT+GGG + chr4.1:23327988-23328007 MS.gene26528:CDS 35.0%
CTATTGCATACGAAGATTCA+TGG + chr4.1:23327644-23327663 MS.gene26528:CDS 35.0%
CTGGAAAGGATAAGAATTTG+GGG + chr4.1:23327989-23328008 MS.gene26528:CDS 35.0%
CTTGAGAAAATTGGTTATGG+TGG + chr4.1:23328093-23328112 MS.gene26528:CDS 35.0%
CTTTGGCAGATAATTTATGG+AGG + chr4.1:23327920-23327939 MS.gene26528:CDS 35.0%
GAAGTAGCGTTATCACAATT+TGG - chr4.1:23328174-23328193 None:intergenic 35.0%
GCTTCCTTTATTAAGCATAG+TGG + chr4.1:23328210-23328229 MS.gene26528:CDS 35.0%
GTTTCTCATTTGCATGGAAA+TGG + chr4.1:23327685-23327704 MS.gene26528:CDS 35.0%
GTTTGGAAATTGATCGTTGT+TGG - chr4.1:23327467-23327486 None:intergenic 35.0%
GTTTGTTTGTCCAACAAGTT+CGG + chr4.1:23327942-23327961 MS.gene26528:CDS 35.0%
TCCTGGAAAGGATAAGAATT+TGG + chr4.1:23327987-23328006 MS.gene26528:CDS 35.0%
TTCAAGGGATTAACCTTGAA+GGG + chr4.1:23327821-23327840 MS.gene26528:CDS 35.0%
TTTCGAGATGAGAATGTCTT+TGG - chr4.1:23327407-23327426 None:intergenic 35.0%
TTTGGGAATGAAGATTCTGA+CGG - chr4.1:23327443-23327462 None:intergenic 35.0%
TTTGTTTGTCCAACAAGTTC+GGG + chr4.1:23327943-23327962 MS.gene26528:CDS 35.0%
! ATCAACCGTTATGCAGATTT+TGG + chr4.1:23327721-23327740 MS.gene26528:CDS 35.0%
! CTTTAGAAACAATGGTGTTG+AGG - chr4.1:23327570-23327589 None:intergenic 35.0%
! TAACCTTGAAGGGATTGTTT+TGG + chr4.1:23327831-23327850 MS.gene26528:CDS 35.0%
!! AGATTCTGACGGATATGTTT+TGG - chr4.1:23327432-23327451 None:intergenic 35.0%
!! ATGGAAATGGTTCTGATGAA+TGG + chr4.1:23327698-23327717 MS.gene26528:CDS 35.0%
!! TTGGATTCTACGTTTGTTGT+TGG - chr4.1:23327388-23327407 None:intergenic 35.0%
!! TTTGGAAAAGTGTTCTTTGC+AGG + chr4.1:23327739-23327758 MS.gene26528:CDS 35.0%
!!! ATTCTTTTGGGGTGTTGAAA+GGG + chr4.1:23327861-23327880 MS.gene26528:CDS 35.0%
AATAGGAAGAGGATGTTCTG+GGG - chr4.1:23327629-23327648 None:intergenic 40.0%
AATGAGAAACGACCCATTTG+AGG - chr4.1:23327675-23327694 None:intergenic 40.0%
AATGATTCGTTGAAGGACAG+AGG + chr4.1:23328051-23328070 MS.gene26528:CDS 40.0%
AGCAAACATTGCACATCACA+TGG + chr4.1:23327774-23327793 MS.gene26528:CDS 40.0%
ATGAGAAACGACCCATTTGA+GGG - chr4.1:23327674-23327693 None:intergenic 40.0%
ATTCATGGACTTCCCTCAAA+TGG + chr4.1:23327659-23327678 MS.gene26528:CDS 40.0%
CAATAGGAAGAGGATGTTCT+GGG - chr4.1:23327630-23327649 None:intergenic 40.0%
CCCAAATTCTTATCCTTTCC+AGG - chr4.1:23327991-23328010 None:intergenic 40.0%
CTATTCGTGTTGGAACTGAA+GGG + chr4.1:23327797-23327816 MS.gene26528:CDS 40.0%
CTTCAAGGGATTAACCTTGA+AGG + chr4.1:23327820-23327839 MS.gene26528:CDS 40.0%
GAAAGGATAAGAATTTGGGG+AGG + chr4.1:23327992-23328011 MS.gene26528:CDS 40.0%
GAACCAAAACAATCCCTTCA+AGG - chr4.1:23327837-23327856 None:intergenic 40.0%
GATAAGAATTTGGGGAGGTT+GGG + chr4.1:23327997-23328016 MS.gene26528:CDS 40.0%
GGTCACATAGAAAGACTCAT+AGG + chr4.1:23327334-23327353 MS.gene26528:CDS 40.0%
GTGATTGAGACAAAAGGTGA+AGG + chr4.1:23328126-23328145 MS.gene26528:CDS 40.0%
GTGGAAGTGATTGAGACAAA+AGG + chr4.1:23328120-23328139 MS.gene26528:CDS 40.0%
GTGTTGAGGAAATTGTGGTA+TGG - chr4.1:23327556-23327575 None:intergenic 40.0%
GTTGTTGGATCAAAAGATGG+AGG - chr4.1:23327373-23327392 None:intergenic 40.0%
TAATCATGGGTGAGAGATCA+AGG - chr4.1:23327300-23327319 None:intergenic 40.0%
TCCTTTCCAGGATTCAAAAG+CGG - chr4.1:23327979-23327998 None:intergenic 40.0%
TCTTCGTATGCAATAGGAAG+AGG - chr4.1:23327640-23327659 None:intergenic 40.0%
TGCTGAGAATGATTCGTTGA+AGG + chr4.1:23328044-23328063 MS.gene26528:CDS 40.0%
TTCATGGACTTCCCTCAAAT+GGG + chr4.1:23327660-23327679 MS.gene26528:CDS 40.0%
TTGAGGAAATTGTGGTATGG+TGG - chr4.1:23327553-23327572 None:intergenic 40.0%
! AAAAGATGGAGGTACGATGT+TGG - chr4.1:23327362-23327381 None:intergenic 40.0%
! AAACAAGGAGAGGGAGTTTT+TGG - chr4.1:23327489-23327508 None:intergenic 40.0%
! AATTGGTTATGGTGGTGTTG+TGG + chr4.1:23328101-23328120 MS.gene26528:CDS 40.0%
! CAATGGTGTTGAGGAAATTG+TGG - chr4.1:23327561-23327580 None:intergenic 40.0%
!! GGACAGAGGTTGGTATTATA+AGG + chr4.1:23328065-23328084 MS.gene26528:CDS 40.0%
!! GTTGGGTTGTAAGAGAGTTT+TGG + chr4.1:23328014-23328033 MS.gene26528:CDS 40.0%
!!! CATTCTTTTGGGGTGTTGAA+AGG + chr4.1:23327860-23327879 MS.gene26528:CDS 40.0%
AGGATTCAAAAGCGGGTCAT+CGG - chr4.1:23327971-23327990 None:intergenic 45.0%
ATTCGTTGAAGGACAGAGGT+TGG + chr4.1:23328055-23328074 MS.gene26528:CDS 45.0%
CATCACATGGCTATTCGTGT+TGG + chr4.1:23327787-23327806 MS.gene26528:CDS 45.0%
CCTTTCCAGGATTCAAAAGC+GGG - chr4.1:23327978-23327997 None:intergenic 45.0%
CGTGGAAGTAAACAAGGAGA+GGG - chr4.1:23327498-23327517 None:intergenic 45.0%
GCAATAGGAAGAGGATGTTC+TGG - chr4.1:23327631-23327650 None:intergenic 45.0%
GCTATTCGTGTTGGAACTGA+AGG + chr4.1:23327796-23327815 MS.gene26528:CDS 45.0%
GGATAAGAATTTGGGGAGGT+TGG + chr4.1:23327996-23328015 MS.gene26528:CDS 45.0%
TGGGTCGTTTCTCATTTGCA+TGG + chr4.1:23327679-23327698 MS.gene26528:CDS 45.0%
TGTTGAAAGGGTTGGATCTG+AGG + chr4.1:23327873-23327892 MS.gene26528:CDS 45.0%
TTGGAACTGAAGGGCTTCAA+GGG + chr4.1:23327806-23327825 MS.gene26528:CDS 45.0%
! CCTCTCCTTGTTTACTTCCA+CGG + chr4.1:23327496-23327515 MS.gene26528:CDS 45.0%
! TTGTGGTATGGTGGTGAGAA+AGG - chr4.1:23327544-23327563 None:intergenic 45.0%
!!! AGGAGAGGGAGTTTTTGGTT+TGG - chr4.1:23327484-23327503 None:intergenic 45.0%
!!! TTTTGGGGTGTTGAAAGGGT+TGG + chr4.1:23327865-23327884 MS.gene26528:CDS 45.0%
CACCACCGTGGAAGTAAACA+AGG - chr4.1:23327504-23327523 None:intergenic 50.0%
CCGTGGAAGTAAACAAGGAG+AGG - chr4.1:23327499-23327518 None:intergenic 50.0%
CTTGTTTACTTCCACGGTGG+TGG + chr4.1:23327502-23327521 MS.gene26528:CDS 50.0%
GTTGGAACTGAAGGGCTTCA+AGG + chr4.1:23327805-23327824 MS.gene26528:CDS 50.0%
TCATCGGATCCCGAACTTGT+TGG - chr4.1:23327955-23327974 None:intergenic 50.0%
TTCTTTGCAGGAGACAGTGC+TGG + chr4.1:23327751-23327770 MS.gene26528:CDS 50.0%
! CTCCTTGTTTACTTCCACGG+TGG + chr4.1:23327499-23327518 MS.gene26528:CDS 50.0%
!! CCCGCTTTTGAATCCTGGAA+AGG + chr4.1:23327975-23327994 MS.gene26528:CDS 50.0%
!! GATGACCCGCTTTTGAATCC+TGG + chr4.1:23327970-23327989 MS.gene26528:CDS 50.0%
CTACGCAGAAACCACCACCG+TGG - chr4.1:23327516-23327535 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 23327271 23328236 23327271 ID=MS.gene26528
chr4.1 mRNA 23327271 23328236 23327271 ID=MS.gene26528.t1;Parent=MS.gene26528
chr4.1 exon 23327271 23328236 23327271 ID=MS.gene26528.t1.exon1;Parent=MS.gene26528.t1
chr4.1 CDS 23327271 23328236 23327271 ID=cds.MS.gene26528.t1;Parent=MS.gene26528.t1
Gene Sequence

>MS.gene26528

ATGGATTCAAGCTCTAACGAAGTAGTCCTTGATCTCTCACCCATGATTAAAATCTACAAAGATGGTCACATAGAAAGACTCATAGGATCCAACATCGTACCTCCATCTTTTGATCCAACAACAAACGTAGAATCCAAAGACATTCTCATCTCGAAAGACCAAAACATATCCGTCAGAATCTTCATTCCCAAACCCAACAACGATCAATTTCCAAACCAAAAACTCCCTCTCCTTGTTTACTTCCACGGTGGTGGTTTCTGCGTAGAAACACCTTTCTCACCACCATACCACAATTTCCTCAACACCATTGTTTCTAAAGCTAATGTGATCGCTGTTTCAGTTGATTACAGAAGAGCCCCAGAACATCCTCTTCCTATTGCATACGAAGATTCATGGACTTCCCTCAAATGGGTCGTTTCTCATTTGCATGGAAATGGTTCTGATGAATGGATCAACCGTTATGCAGATTTTGGAAAAGTGTTCTTTGCAGGAGACAGTGCTGGAGCAAACATTGCACATCACATGGCTATTCGTGTTGGAACTGAAGGGCTTCAAGGGATTAACCTTGAAGGGATTGTTTTGGTTCATACATTCTTTTGGGGTGTTGAAAGGGTTGGATCTGAGGCTGCTGAGAAATCTGAACATTTATCTTTGGCAGATAATTTATGGAGGTTTGTTTGTCCAACAAGTTCGGGATCCGATGACCCGCTTTTGAATCCTGGAAAGGATAAGAATTTGGGGAGGTTGGGTTGTAAGAGAGTTTTGGTTTGTGTTGCTGAGAATGATTCGTTGAAGGACAGAGGTTGGTATTATAAGGAGTTGCTTGAGAAAATTGGTTATGGTGGTGTTGTGGAAGTGATTGAGACAAAAGGTGAAGGACATGTTTTTCATCTCTTTAATCCAAATTGTGATAACGCTACTTCTTTGCTTAATCAAATTGCTTCCTTTATTAAGCATAGTGGTTAA
Protein sequence

>MS.gene26528.t1

MDSSSNEVVLDLSPMIKIYKDGHIERLIGSNIVPPSFDPTTNVESKDILISKDQNISVRIFIPKPNNDQFPNQKLPLLVYFHGGGFCVETPFSPPYHNFLNTIVSKANVIAVSVDYRRAPEHPLPIAYEDSWTSLKWVVSHLHGNGSDEWINRYADFGKVFFAGDSAGANIAHHMAIRVGTEGLQGINLEGIVLVHTFFWGVERVGSEAAEKSEHLSLADNLWRFVCPTSSGSDDPLLNPGKDKNLGRLGCKRVLVCVAENDSLKDRGWYYKELLEKIGYGGVVEVIETKGEGHVFHLFNPNCDNATSLLNQIASFIKHSG