AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene047804

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047804.t1 MTR_4g086470 95.000 320 16 0 1 320 1 320 0.0 603
MS.gene047804.t1 MTR_4g086480 84.424 321 49 1 1 320 1 321 0.0 578
MS.gene047804.t1 MTR_4g086510 62.229 323 116 3 1 320 1 320 7.67e-156 439
MS.gene047804.t1 MTR_7g056207 60.248 322 122 3 2 320 34 352 8.33e-148 420
MS.gene047804.t1 MTR_3g101420 44.872 312 161 4 14 319 10 316 1.76e-95 285
MS.gene047804.t1 MTR_5g005850 42.683 328 175 7 1 317 3 328 1.49e-94 283
MS.gene047804.t1 MTR_4g086540 45.714 315 151 4 3 317 10 304 1.24e-92 278
MS.gene047804.t1 MTR_1g105020 44.654 318 164 8 10 317 7 322 1.22e-91 276
MS.gene047804.t1 MTR_3g450680 43.827 324 171 6 6 319 11 333 9.57e-91 274
MS.gene047804.t1 MTR_8g040860 43.849 317 170 6 10 319 15 330 2.60e-85 260
MS.gene047804.t1 MTR_5g005920 39.091 330 188 9 2 319 4 332 3.07e-78 242
MS.gene047804.t1 MTR_7g051020 42.547 322 176 6 4 317 5 325 6.31e-77 238
MS.gene047804.t1 MTR_1g104930 43.789 322 169 7 4 317 5 322 1.58e-75 235
MS.gene047804.t1 MTR_5g005900 40.303 330 180 8 4 319 2 328 2.44e-74 232
MS.gene047804.t1 MTR_1g104933 42.857 322 170 8 3 317 2 316 2.37e-69 219
MS.gene047804.t1 MTR_1g012430 38.217 314 178 8 14 320 6 310 7.53e-54 179
MS.gene047804.t1 MTR_4g050140 35.806 310 187 7 18 319 12 317 1.01e-53 178
MS.gene047804.t1 MTR_1g111280 33.445 299 179 5 14 300 29 319 2.79e-47 162
MS.gene047804.t1 MTR_7g406880 33.225 307 173 9 18 300 28 326 1.12e-44 156
MS.gene047804.t1 MTR_1g102160 33.455 275 159 7 23 279 23 291 6.75e-40 142
MS.gene047804.t1 MTR_7g107040 30.449 312 204 7 14 317 10 316 4.09e-39 140
MS.gene047804.t1 MTR_3g012440 31.985 272 170 5 61 319 73 342 1.54e-38 139
MS.gene047804.t1 MTR_6g464120 34.340 265 159 6 24 277 29 289 1.04e-37 140
MS.gene047804.t1 MTR_6g464320 32.550 298 172 11 38 317 39 325 1.12e-37 137
MS.gene047804.t1 MTR_8g035520 33.333 291 181 6 36 317 38 324 1.09e-36 134
MS.gene047804.t1 MTR_6g065110 30.844 308 189 7 24 317 37 334 2.16e-35 131
MS.gene047804.t1 MTR_6g065120 31.833 311 187 7 24 319 37 337 2.47e-35 131
MS.gene047804.t1 MTR_6g464280 32.886 298 171 10 38 317 38 324 2.57e-35 130
MS.gene047804.t1 MTR_6g065430 33.115 305 185 8 24 319 35 329 5.21e-35 130
MS.gene047804.t1 MTR_8g035540 33.333 297 175 9 38 320 32 319 1.31e-34 129
MS.gene047804.t1 MTR_6g065370 31.757 296 179 6 38 319 49 335 7.25e-34 127
MS.gene047804.t1 MTR_6g065400 31.419 296 180 6 38 319 49 335 1.31e-33 126
MS.gene047804.t1 MTR_6g065340 31.164 292 170 6 38 319 60 330 2.28e-33 125
MS.gene047804.t1 MTR_1g089310 32.143 252 151 7 73 317 102 340 5.05e-33 125
MS.gene047804.t1 MTR_1g089310 32.143 252 151 7 73 317 118 356 5.33e-33 125
MS.gene047804.t1 MTR_6g464510 32.000 300 169 11 38 317 42 326 2.55e-32 122
MS.gene047804.t1 MTR_6g065270 30.565 301 180 8 38 319 47 337 3.46e-32 122
MS.gene047804.t1 MTR_1g102170 31.203 266 163 7 24 276 43 301 9.21e-32 121
MS.gene047804.t1 MTR_0007s0520 30.564 337 196 12 1 320 12 327 2.24e-31 120
MS.gene047804.t1 MTR_8g035500 32.411 253 158 5 38 279 33 283 3.68e-31 119
MS.gene047804.t1 MTR_7g093950 31.274 259 149 8 73 317 103 346 1.61e-30 118
MS.gene047804.t1 MTR_1g082210 29.508 305 181 11 33 317 50 340 1.97e-29 115
MS.gene047804.t1 MTR_6g022710 29.389 262 141 10 74 296 158 414 1.97e-18 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047804.t1 AT3G48690 48.287 321 157 6 7 318 1 321 6.85e-102 302
MS.gene047804.t1 AT1G47480 47.040 321 158 5 1 319 1 311 6.74e-101 299
MS.gene047804.t1 AT2G03550 47.619 315 160 4 7 319 1 312 2.96e-100 297
MS.gene047804.t1 AT3G48700 45.706 326 163 6 7 318 1 326 7.72e-100 297
MS.gene047804.t1 AT1G19190 46.541 318 162 5 7 319 1 315 2.36e-98 293
MS.gene047804.t1 AT1G49650 48.701 308 151 6 16 317 66 372 3.04e-95 287
MS.gene047804.t1 AT1G49660 48.447 322 150 4 7 317 1 317 3.59e-94 282
MS.gene047804.t1 AT1G49640 47.403 308 149 7 17 317 12 313 2.59e-91 275
MS.gene047804.t1 AT1G68620 31.288 326 198 10 5 317 17 329 1.00e-43 153
MS.gene047804.t1 AT5G06570 32.915 319 201 7 10 317 9 325 2.54e-38 139
MS.gene047804.t1 AT5G06570 32.915 319 201 7 10 317 9 325 2.54e-38 139
MS.gene047804.t1 AT5G06570 32.915 319 201 7 10 317 24 340 4.02e-38 138
MS.gene047804.t1 AT5G06570 32.915 319 201 7 10 317 24 340 4.02e-38 138
MS.gene047804.t1 AT5G16080 31.353 303 184 9 14 302 31 323 1.50e-37 137
MS.gene047804.t1 AT2G45600 31.864 295 182 8 38 320 31 318 2.77e-36 133
MS.gene047804.t1 AT2G45610 32.192 292 180 8 38 317 38 323 1.01e-32 124
MS.gene047804.t1 AT5G27320 29.373 303 183 9 33 317 50 339 1.21e-32 124
MS.gene047804.t1 AT3G05120 29.180 305 183 10 33 317 50 341 1.80e-32 123
MS.gene047804.t1 AT3G63010 32.090 268 150 9 33 279 50 306 3.86e-30 117
MS.gene047804.t1 AT5G23530 30.345 290 179 9 37 317 51 326 1.53e-29 115
MS.gene047804.t1 AT5G62180 30.909 275 162 8 38 295 38 301 3.53e-29 114

Find 70 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTGGTGGGTGATTGGTTT+TGG 0.145456 4.4:-25916349 None:intergenic
GCTAATATTTCACACTATTT+AGG 0.162895 4.4:+25916660 MS.gene047804:CDS
TTTAGATTCAACGTTGGTTT+TGG 0.202200 4.4:-25916277 None:intergenic
ACTTCACTTGCTAATGTTAT+TGG 0.227846 4.4:+25916465 MS.gene047804:CDS
CCATTGCTCATGAAGATTCA+TGG 0.261987 4.4:+25916529 MS.gene047804:CDS
TCGGTTTGGGAAGGAAAATT+TGG 0.267860 4.4:+25916686 MS.gene047804:CDS
TTGAGGTAGTTATGGTAGTT+TGG 0.286089 4.4:-25916435 None:intergenic
CACTATTTAGGTATTCGGTT+TGG 0.299444 4.4:+25916672 MS.gene047804:CDS
AGTTGTATCCTTCATCAAAA+AGG 0.305612 4.4:+25917088 MS.gene047804:CDS
TTTCACACTATTTAGGTATT+CGG 0.307797 4.4:+25916667 MS.gene047804:CDS
CCCGGCTAATGATCCCGATT+TGG 0.313711 4.4:+25916869 MS.gene047804:CDS
CCGGCTAATGATCCCGATTT+GGG 0.325716 4.4:+25916870 MS.gene047804:CDS
CTTTCTCAAAATCTGCATAT+TGG 0.331880 4.4:-25916611 None:intergenic
AGATTGCTTGTTTGTGTTGC+TGG 0.344082 4.4:+25916909 MS.gene047804:CDS
CCTGTCTTTGTTTACTTTCA+CGG 0.344106 4.4:+25916381 MS.gene047804:CDS
TGCTGAGATGTTATGTTCTT+CGG 0.344889 4.4:-25916313 None:intergenic
GGTCGTGTGGAAAATCTAAT+AGG 0.345060 4.4:+25916225 MS.gene047804:CDS
GCTTCACATGTTGGTGGAAA+TGG 0.350595 4.4:+25916570 MS.gene047804:CDS
AATTGGATCAGAATCAAATA+TGG 0.360234 4.4:+25916767 MS.gene047804:CDS
ATTCATGGCTTGCACTCAAA+TGG 0.361551 4.4:+25916544 MS.gene047804:CDS
ACTATTTAGGTATTCGGTTT+GGG 0.372944 4.4:+25916673 MS.gene047804:CDS
TAGAAAAGATTCATAATTTG+TGG 0.374091 4.4:+25916799 MS.gene047804:CDS
TCTTCATGAGCAATGGGAAC+AGG 0.384148 4.4:-25916522 None:intergenic
AATGGCTATTTCGTCGTTGA+TGG 0.384770 4.4:-25916169 None:intergenic
TTGGATGGTTTGAAACTTGA+AGG 0.392629 4.4:+25916705 MS.gene047804:CDS
TAACAGAGTTGAGGTAGTTA+TGG 0.398147 4.4:-25916443 None:intergenic
ATATTTGATTCTGATCCAAT+TGG 0.402441 4.4:-25916765 None:intergenic
TTATGGTAGTTTGGTGAGAA+AGG 0.405757 4.4:-25916426 None:intergenic
TGATCCCGATTTGGGGAAGT+TGG 0.407781 4.4:+25916878 MS.gene047804:CDS
ACAACCCAACTTCCCCAAAT+CGG 0.414443 4.4:-25916883 None:intergenic
AATCAATGGGTCGTCAGATC+CGG 0.425185 4.4:-25916844 None:intergenic
GATCCCGATTTGGGGAAGTT+GGG 0.451553 4.4:+25916879 MS.gene047804:CDS
CCCAAATCGGGATCATTAGC+CGG 0.457367 4.4:-25916870 None:intergenic
GCAATGGGAACAGGGTGTTC+CGG 0.459329 4.4:-25916513 None:intergenic
TCATTAGCCGGGTTAATCAA+TGG 0.461765 4.4:-25916858 None:intergenic
TTTGTTTACTTTCACGGCGG+TGG 0.469368 4.4:+25916387 MS.gene047804:CDS
GACATAGCATTCTCACAACT+TGG 0.472647 4.4:-25917053 None:intergenic
CCAAATCGGGATCATTAGCC+GGG 0.473736 4.4:-25916869 None:intergenic
CAACCCAACTTCCCCAAATC+GGG 0.476448 4.4:-25916882 None:intergenic
TTCATGGCTTGCACTCAAAT+GGG 0.480049 4.4:+25916545 MS.gene047804:CDS
AAGTGGTTGGGGTGGTGTTG+TGG 0.481631 4.4:+25916983 MS.gene047804:CDS
CATGAATCTTCATGAGCAAT+GGG 0.488874 4.4:-25916528 None:intergenic
GATTGCTTGTTTGTGTTGCT+GGG 0.495692 4.4:+25916910 MS.gene047804:CDS
CCGTGAAAGTAAACAAAGAC+AGG 0.497695 4.4:-25916381 None:intergenic
CATTAGCCGGGTTAATCAAT+GGG 0.503555 4.4:-25916857 None:intergenic
GGCTATTTCGTCGTTGATGG+TGG 0.504951 4.4:-25916166 None:intergenic
TTTGAGAAAGTGTTCTTAGG+AGG 0.509667 4.4:+25916624 MS.gene047804:CDS
CCATGAATCTTCATGAGCAA+TGG 0.523102 4.4:-25916529 None:intergenic
TCGTCAGATCCGGTCGTGGT+TGG 0.537151 4.4:-25916834 None:intergenic
TTTACATGTCCAACCACGAC+CGG 0.538692 4.4:+25916825 MS.gene047804:CDS
TGGATGGTTTGAAACTTGAA+GGG 0.541623 4.4:+25916706 MS.gene047804:CDS
GTGGAAATGGCTCTGATGAA+TGG 0.542774 4.4:+25916583 MS.gene047804:CDS
TATTTCGTCGTTGATGGTGG+AGG 0.545398 4.4:-25916163 None:intergenic
TTCTTAGGAGGTGATAGTGC+TGG 0.559579 4.4:+25916636 MS.gene047804:CDS
TTTAGGTATTCGGTTTGGGA+AGG 0.559737 4.4:+25916677 MS.gene047804:CDS
TTTGGGAAGGAAAATTTGGA+TGG 0.568228 4.4:+25916690 MS.gene047804:CDS
AAATGGGTTGCTTCACATGT+TGG 0.579541 4.4:+25916561 MS.gene047804:CDS
TGGGTCGTCAGATCCGGTCG+TGG 0.585748 4.4:-25916838 None:intergenic
TTTGTATACTCTCAAGATTG+GGG 0.592780 4.4:-25916199 None:intergenic
CTTCATGAGCAATGGGAACA+GGG 0.596332 4.4:-25916521 None:intergenic
TGACGACCCATTGATTAACC+CGG 0.607111 4.4:+25916851 MS.gene047804:CDS
TGGGTTGCTTCACATGTTGG+TGG 0.616285 4.4:+25916564 MS.gene047804:CDS
TTGTATACTCTCAAGATTGG+GGG 0.619560 4.4:-25916198 None:intergenic
TGTTCACTACAGAAGAGCAC+CGG 0.621670 4.4:+25916494 MS.gene047804:CDS
GTCTTTGTTTACTTTCACGG+CGG 0.634625 4.4:+25916384 MS.gene047804:CDS
CGTGAAAGTAAACAAAGACA+GGG 0.635829 4.4:-25916380 None:intergenic
AACGTCTTTAGATTCAACGT+TGG 0.641244 4.4:-25916283 None:intergenic
CGGCTAATGATCCCGATTTG+GGG 0.655506 4.4:+25916871 MS.gene047804:CDS
TGTGGAAGTTGTTGAAACAG+AGG 0.656063 4.4:+25917001 MS.gene047804:CDS
CAAGTGAAGTAACAGAGTTG+AGG 0.663575 4.4:-25916452 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGAAAAGATTCATAATTTG+TGG + chr4.4:25916799-25916818 MS.gene047804:CDS 20.0%
!!! TTATATCCATCCTTATTTTT+GGG + chr4.4:25916734-25916753 MS.gene047804:CDS 20.0%
!!! TTTATATCCATCCTTATTTT+TGG + chr4.4:25916733-25916752 MS.gene047804:CDS 20.0%
! AAAGAATTGCTTGAAAAAAG+TGG + chr4.4:25916966-25916985 MS.gene047804:CDS 25.0%
! AATTGGATCAGAATCAAATA+TGG + chr4.4:25916767-25916786 MS.gene047804:CDS 25.0%
! ATATTTGATTCTGATCCAAT+TGG - chr4.4:25916768-25916787 None:intergenic 25.0%
! GCTAATATTTCACACTATTT+AGG + chr4.4:25916660-25916679 MS.gene047804:CDS 25.0%
! TTTCACACTATTTAGGTATT+CGG + chr4.4:25916667-25916686 MS.gene047804:CDS 25.0%
!! ATCTTGAGAGTATACAAAAA+CGG + chr4.4:25916204-25916223 MS.gene047804:CDS 25.0%
!! TTTTGTATACTCTCAAGATT+GGG - chr4.4:25916203-25916222 None:intergenic 25.0%
!! TTTTTGTATACTCTCAAGAT+TGG - chr4.4:25916204-25916223 None:intergenic 25.0%
!!! TATATCCATCCTTATTTTTG+GGG + chr4.4:25916735-25916754 MS.gene047804:CDS 25.0%
AATTGCTTGAAAAAAGTGGT+TGG + chr4.4:25916970-25916989 MS.gene047804:CDS 30.0%
ACTATTTAGGTATTCGGTTT+GGG + chr4.4:25916673-25916692 MS.gene047804:CDS 30.0%
AGTTGTATCCTTCATCAAAA+AGG + chr4.4:25917088-25917107 MS.gene047804:CDS 30.0%
ATTGCTTGAAAAAAGTGGTT+GGG + chr4.4:25916971-25916990 MS.gene047804:CDS 30.0%
CTTTCTCAAAATCTGCATAT+TGG - chr4.4:25916614-25916633 None:intergenic 30.0%
TTTGTATACTCTCAAGATTG+GGG - chr4.4:25916202-25916221 None:intergenic 30.0%
! ACTTCACTTGCTAATGTTAT+TGG + chr4.4:25916465-25916484 MS.gene047804:CDS 30.0%
! TTTTGATGAAGGATACAACT+TGG - chr4.4:25917088-25917107 None:intergenic 30.0%
!! AAAGATATTTTGAGGGATAG+GGG + chr4.4:25916933-25916952 MS.gene047804:CDS 30.0%
!! GAAAGATATTTTGAGGGATA+GGG + chr4.4:25916932-25916951 MS.gene047804:CDS 30.0%
!!! GATTTTGAGAAAGTGTTCTT+AGG + chr4.4:25916621-25916640 MS.gene047804:CDS 30.0%
!!! TTAGATTCAACGTTGGTTTT+GGG - chr4.4:25916279-25916298 None:intergenic 30.0%
!!! TTTAGATTCAACGTTGGTTT+TGG - chr4.4:25916280-25916299 None:intergenic 30.0%
AACGTCTTTAGATTCAACGT+TGG - chr4.4:25916286-25916305 None:intergenic 35.0%
CACTATTTAGGTATTCGGTT+TGG + chr4.4:25916672-25916691 MS.gene047804:CDS 35.0%
CATGAATCTTCATGAGCAAT+GGG - chr4.4:25916531-25916550 None:intergenic 35.0%
CGTGAAAGTAAACAAAGACA+GGG - chr4.4:25916383-25916402 None:intergenic 35.0%
TAACAGAGTTGAGGTAGTTA+TGG - chr4.4:25916446-25916465 None:intergenic 35.0%
TGCTGAGATGTTATGTTCTT+CGG - chr4.4:25916316-25916335 None:intergenic 35.0%
TTGAGGTAGTTATGGTAGTT+TGG - chr4.4:25916438-25916457 None:intergenic 35.0%
TTGCTTGAAAAAAGTGGTTG+GGG + chr4.4:25916972-25916991 MS.gene047804:CDS 35.0%
TTGTATACTCTCAAGATTGG+GGG - chr4.4:25916201-25916220 None:intergenic 35.0%
TTTGGGAAGGAAAATTTGGA+TGG + chr4.4:25916690-25916709 MS.gene047804:CDS 35.0%
! AAACAAAGACAGGGAGTTTT+TGG - chr4.4:25916374-25916393 None:intergenic 35.0%
! AACAAAGACAGGGAGTTTTT+GGG - chr4.4:25916373-25916392 None:intergenic 35.0%
! CCTGTCTTTGTTTACTTTCA+CGG + chr4.4:25916381-25916400 MS.gene047804:CDS 35.0%
! TGGATGGTTTGAAACTTGAA+GGG + chr4.4:25916706-25916725 MS.gene047804:CDS 35.0%
! TTATGGTAGTTTGGTGAGAA+AGG - chr4.4:25916429-25916448 None:intergenic 35.0%
! TTGCTGGGAAAGATATTTTG+AGG + chr4.4:25916925-25916944 MS.gene047804:CDS 35.0%
! TTGGATGGTTTGAAACTTGA+AGG + chr4.4:25916705-25916724 MS.gene047804:CDS 35.0%
!! GGAAAGATATTTTGAGGGAT+AGG + chr4.4:25916931-25916950 MS.gene047804:CDS 35.0%
!! TGCTGGGAAAGATATTTTGA+GGG + chr4.4:25916926-25916945 MS.gene047804:CDS 35.0%
!! TTTGAGAAAGTGTTCTTAGG+AGG + chr4.4:25916624-25916643 MS.gene047804:CDS 35.0%
AGATTGCTTGTTTGTGTTGC+TGG + chr4.4:25916909-25916928 MS.gene047804:CDS 40.0%
AGTATACAAAAACGGTCGTG+TGG + chr4.4:25916212-25916231 MS.gene047804:CDS 40.0%
CAAGTGAAGTAACAGAGTTG+AGG - chr4.4:25916455-25916474 None:intergenic 40.0%
CATTAGCCGGGTTAATCAAT+GGG - chr4.4:25916860-25916879 None:intergenic 40.0%
CCATGAATCTTCATGAGCAA+TGG - chr4.4:25916532-25916551 None:intergenic 40.0%
CCATTGCTCATGAAGATTCA+TGG + chr4.4:25916529-25916548 MS.gene047804:CDS 40.0%
CCGTGAAAGTAAACAAAGAC+AGG - chr4.4:25916384-25916403 None:intergenic 40.0%
GACATAGCATTCTCACAACT+TGG - chr4.4:25917056-25917075 None:intergenic 40.0%
GGTCGTGTGGAAAATCTAAT+AGG + chr4.4:25916225-25916244 MS.gene047804:CDS 40.0%
TCATTAGCCGGGTTAATCAA+TGG - chr4.4:25916861-25916880 None:intergenic 40.0%
TGTGGAAGTTGTTGAAACAG+AGG + chr4.4:25917001-25917020 MS.gene047804:CDS 40.0%
! AATGGCTATTTCGTCGTTGA+TGG - chr4.4:25916172-25916191 None:intergenic 40.0%
! ATTCATGGCTTGCACTCAAA+TGG + chr4.4:25916544-25916563 MS.gene047804:CDS 40.0%
! CAAGATTGGGGGTATATCAA+TGG - chr4.4:25916190-25916209 None:intergenic 40.0%
! GATTGCTTGTTTGTGTTGCT+GGG + chr4.4:25916910-25916929 MS.gene047804:CDS 40.0%
! GTCTTTGTTTACTTTCACGG+CGG + chr4.4:25916384-25916403 MS.gene047804:CDS 40.0%
! TTCATGGCTTGCACTCAAAT+GGG + chr4.4:25916545-25916564 MS.gene047804:CDS 40.0%
!! AAATGGGTTGCTTCACATGT+TGG + chr4.4:25916561-25916580 MS.gene047804:CDS 40.0%
!! TCGGTTTGGGAAGGAAAATT+TGG + chr4.4:25916686-25916705 MS.gene047804:CDS 40.0%
!! TTTAGGTATTCGGTTTGGGA+AGG + chr4.4:25916677-25916696 MS.gene047804:CDS 40.0%
!!! TTGGTTTTGGGATCAAGAGA+TGG - chr4.4:25916267-25916286 None:intergenic 40.0%
AATCAATGGGTCGTCAGATC+CGG - chr4.4:25916847-25916866 None:intergenic 45.0%
ACAACCCAACTTCCCCAAAT+CGG - chr4.4:25916886-25916905 None:intergenic 45.0%
CCACACCCCAAAAATAAGGA+TGG - chr4.4:25916743-25916762 None:intergenic 45.0%
CTTCATGAGCAATGGGAACA+GGG - chr4.4:25916524-25916543 None:intergenic 45.0%
CTTGAAAAAAGTGGTTGGGG+TGG + chr4.4:25916975-25916994 MS.gene047804:CDS 45.0%
GGATCCACACCCCAAAAATA+AGG - chr4.4:25916747-25916766 None:intergenic 45.0%
TCTTCATGAGCAATGGGAAC+AGG - chr4.4:25916525-25916544 None:intergenic 45.0%
TTTACATGTCCAACCACGAC+CGG + chr4.4:25916825-25916844 MS.gene047804:CDS 45.0%
TTTGTTTACTTTCACGGCGG+TGG + chr4.4:25916387-25916406 MS.gene047804:CDS 45.0%
! GCTTCACATGTTGGTGGAAA+TGG + chr4.4:25916570-25916589 MS.gene047804:CDS 45.0%
! TGACGACCCATTGATTAACC+CGG + chr4.4:25916851-25916870 MS.gene047804:CDS 45.0%
! TGTTCACTACAGAAGAGCAC+CGG + chr4.4:25916494-25916513 MS.gene047804:CDS 45.0%
! TTCTTAGGAGGTGATAGTGC+TGG + chr4.4:25916636-25916655 MS.gene047804:CDS 45.0%
!! GTGGAAATGGCTCTGATGAA+TGG + chr4.4:25916583-25916602 MS.gene047804:CDS 45.0%
!! TATTTCGTCGTTGATGGTGG+AGG - chr4.4:25916166-25916185 None:intergenic 45.0%
!!! AAGACAGGGAGTTTTTGGGT+TGG - chr4.4:25916369-25916388 None:intergenic 45.0%
!!! CCATCCTTATTTTTGGGGTG+TGG + chr4.4:25916740-25916759 MS.gene047804:CDS 45.0%
!!! GTTGGTGGGTGATTGGTTTT+GGG - chr4.4:25916351-25916370 None:intergenic 45.0%
!!! GTTTTGGGATCAAGAGATGG+AGG - chr4.4:25916264-25916283 None:intergenic 45.0%
!!! TTTTGGGGTGTGGATCCAAT+TGG + chr4.4:25916750-25916769 MS.gene047804:CDS 45.0%
!!! TTTTTGGGTTGGTGGGTGAT+TGG - chr4.4:25916358-25916377 None:intergenic 45.0%
CAACCCAACTTCCCCAAATC+GGG - chr4.4:25916885-25916904 None:intergenic 50.0%
CCAAATCGGGATCATTAGCC+GGG - chr4.4:25916872-25916891 None:intergenic 50.0%
CCCAAATCGGGATCATTAGC+CGG - chr4.4:25916873-25916892 None:intergenic 50.0%
CCGGCTAATGATCCCGATTT+GGG + chr4.4:25916870-25916889 MS.gene047804:CDS 50.0%
TGGGTTGCTTCACATGTTGG+TGG + chr4.4:25916564-25916583 MS.gene047804:CDS 50.0%
! CGGCTAATGATCCCGATTTG+GGG + chr4.4:25916871-25916890 MS.gene047804:CDS 50.0%
! GGCTATTTCGTCGTTGATGG+TGG - chr4.4:25916169-25916188 None:intergenic 50.0%
!! GATCCCGATTTGGGGAAGTT+GGG + chr4.4:25916879-25916898 MS.gene047804:CDS 50.0%
!! TGATCCCGATTTGGGGAAGT+TGG + chr4.4:25916878-25916897 MS.gene047804:CDS 50.0%
!!! ACAGGGAGTTTTTGGGTTGG+TGG - chr4.4:25916366-25916385 None:intergenic 50.0%
!!! CAGGGAGTTTTTGGGTTGGT+GGG - chr4.4:25916365-25916384 None:intergenic 50.0%
!!! GGTTGGTGGGTGATTGGTTT+TGG - chr4.4:25916352-25916371 None:intergenic 50.0%
CCCGGCTAATGATCCCGATT+TGG + chr4.4:25916869-25916888 MS.gene047804:CDS 55.0%
! AAGTGGTTGGGGTGGTGTTG+TGG + chr4.4:25916983-25917002 MS.gene047804:CDS 55.0%
! GCAATGGGAACAGGGTGTTC+CGG - chr4.4:25916516-25916535 None:intergenic 55.0%
TCGTCAGATCCGGTCGTGGT+TGG - chr4.4:25916837-25916856 None:intergenic 60.0%
TGGGTCGTCAGATCCGGTCG+TGG - chr4.4:25916841-25916860 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 25916153 25917115 25916153 ID=MS.gene047804
chr4.4 mRNA 25916153 25917115 25916153 ID=MS.gene047804.t1;Parent=MS.gene047804
chr4.4 exon 25916153 25917115 25916153 ID=MS.gene047804.t1.exon1;Parent=MS.gene047804.t1
chr4.4 CDS 25916153 25917115 25916153 ID=cds.MS.gene047804.t1;Parent=MS.gene047804.t1
Gene Sequence

>MS.gene047804

ATGGATTCAACCTCCACCATCAACGACGAAATAGCCATTGATATACCCCCAATCTTGAGAGTATACAAAAACGGTCGTGTGGAAAATCTAATAGGTGATGAGATTCTTCCTCCATCTCTTGATCCCAAAACCAACGTTGAATCTAAAGACGTTATAATCTCCGAAGAACATAACATCTCAGCAAGACTTTTCATTCCCAAAACCAATCACCCACCAACCCAAAAACTCCCTGTCTTTGTTTACTTTCACGGCGGTGGTTTTTGCATTGAAACACCTTTCTCACCAAACTACCATAACTACCTCAACTCTGTTACTTCACTTGCTAATGTTATTGGTGTTTCTGTTCACTACAGAAGAGCACCGGAACACCCTGTTCCCATTGCTCATGAAGATTCATGGCTTGCACTCAAATGGGTTGCTTCACATGTTGGTGGAAATGGCTCTGATGAATGGTTGAACCAATATGCAGATTTTGAGAAAGTGTTCTTAGGAGGTGATAGTGCTGGTGCTAATATTTCACACTATTTAGGTATTCGGTTTGGGAAGGAAAATTTGGATGGTTTGAAACTTGAAGGGAGTGTTTATATCCATCCTTATTTTTGGGGTGTGGATCCAATTGGATCAGAATCAAATATGGCTGAATTTGTAGAAAAGATTCATAATTTGTGGCGTTTTACATGTCCAACCACGACCGGATCTGACGACCCATTGATTAACCCGGCTAATGATCCCGATTTGGGGAAGTTGGGTTGTAAGAGATTGCTTGTTTGTGTTGCTGGGAAAGATATTTTGAGGGATAGGGGTTTGTATTACAAAGAATTGCTTGAAAAAAGTGGTTGGGGTGGTGTTGTGGAAGTTGTTGAAACAGAGGATGAACAACATATTTTTCATCTGTTCAAACCAAGTTGTGAGAATGCTATGTCTTTGCTTAACCAAGTTGTATCCTTCATCAAAAAGGCTTGA
Protein sequence

>MS.gene047804.t1

MDSTSTINDEIAIDIPPILRVYKNGRVENLIGDEILPPSLDPKTNVESKDVIISEEHNISARLFIPKTNHPPTQKLPVFVYFHGGGFCIETPFSPNYHNYLNSVTSLANVIGVSVHYRRAPEHPVPIAHEDSWLALKWVASHVGGNGSDEWLNQYADFEKVFLGGDSAGANISHYLGIRFGKENLDGLKLEGSVYIHPYFWGVDPIGSESNMAEFVEKIHNLWRFTCPTTTGSDDPLINPANDPDLGKLGCKRLLVCVAGKDILRDRGLYYKELLEKSGWGGVVEVVETEDEQHIFHLFKPSCENAMSLLNQVVSFIKKA