AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene022960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene022960.t1 MTR_7g056207 93.498 323 21 0 2 324 34 356 0.0 632
MS.gene022960.t1 MTR_4g086510 86.164 318 44 0 1 318 1 318 0.0 572
MS.gene022960.t1 MTR_4g086480 62.037 324 116 3 1 320 1 321 6.78e-155 437
MS.gene022960.t1 MTR_4g086470 60.372 323 122 3 1 320 1 320 2.02e-140 400
MS.gene022960.t1 MTR_4g086540 44.304 316 153 3 2 317 12 304 1.58e-95 286
MS.gene022960.t1 MTR_3g101420 43.671 316 164 5 9 318 8 315 3.12e-92 277
MS.gene022960.t1 MTR_5g005850 44.411 331 165 9 1 317 3 328 5.70e-90 272
MS.gene022960.t1 MTR_1g105020 44.172 326 169 8 1 317 1 322 5.14e-88 267
MS.gene022960.t1 MTR_3g450680 41.846 325 173 8 5 318 13 332 1.31e-80 248
MS.gene022960.t1 MTR_5g005900 42.727 330 174 9 1 318 1 327 3.49e-76 237
MS.gene022960.t1 MTR_8g040860 40.000 320 179 8 7 318 15 329 1.45e-74 233
MS.gene022960.t1 MTR_5g005920 39.210 329 181 9 3 317 7 330 1.70e-73 230
MS.gene022960.t1 MTR_1g104930 41.304 322 176 7 4 318 8 323 1.33e-70 222
MS.gene022960.t1 MTR_7g051020 40.062 322 183 7 4 318 8 326 4.75e-67 213
MS.gene022960.t1 MTR_1g104933 40.252 318 175 7 7 318 9 317 4.22e-63 203
MS.gene022960.t1 MTR_1g111280 37.107 318 180 8 8 313 26 335 3.74e-57 188
MS.gene022960.t1 MTR_4g050140 33.951 324 193 7 5 317 2 315 8.23e-55 181
MS.gene022960.t1 MTR_7g406880 34.462 325 190 8 15 318 28 350 1.19e-53 179
MS.gene022960.t1 MTR_1g012430 36.593 317 184 9 8 318 3 308 1.02e-52 176
MS.gene022960.t1 MTR_7g107040 34.277 318 193 8 8 317 7 316 7.02e-47 161
MS.gene022960.t1 MTR_6g464120 34.868 304 178 9 21 313 29 323 2.79e-45 161
MS.gene022960.t1 MTR_1g102160 34.520 281 159 7 16 279 19 291 1.42e-43 152
MS.gene022960.t1 MTR_3g012440 32.588 313 186 8 7 298 6 314 8.54e-43 151
MS.gene022960.t1 MTR_8g035520 33.974 312 190 7 16 318 21 325 4.18e-42 149
MS.gene022960.t1 MTR_6g464510 32.353 306 184 9 24 315 31 327 9.42e-41 145
MS.gene022960.t1 MTR_8g035540 33.540 322 194 8 16 324 9 323 3.48e-40 144
MS.gene022960.t1 MTR_1g102170 33.582 268 157 7 21 276 43 301 1.19e-39 142
MS.gene022960.t1 MTR_6g065110 33.333 291 174 6 39 318 54 335 4.57e-39 141
MS.gene022960.t1 MTR_6g464280 32.364 275 168 6 35 296 38 307 1.35e-38 139
MS.gene022960.t1 MTR_6g464320 31.081 296 181 9 35 315 39 326 3.92e-38 138
MS.gene022960.t1 MTR_0007s0520 30.861 337 198 12 2 318 4 325 5.36e-37 135
MS.gene022960.t1 MTR_6g065120 30.640 297 183 7 35 318 50 336 9.23e-36 132
MS.gene022960.t1 MTR_1g082210 31.373 306 181 8 33 322 53 345 1.02e-35 132
MS.gene022960.t1 MTR_1g089310 33.225 307 172 11 33 321 53 344 1.08e-34 129
MS.gene022960.t1 MTR_7g093950 31.949 313 174 10 33 321 53 350 1.53e-34 129
MS.gene022960.t1 MTR_1g089310 33.225 307 172 11 33 321 69 360 1.56e-34 129
MS.gene022960.t1 MTR_8g035500 31.890 254 161 5 35 279 33 283 5.81e-34 127
MS.gene022960.t1 MTR_6g065370 29.392 296 187 7 35 318 49 334 8.48e-34 127
MS.gene022960.t1 MTR_6g065400 29.730 296 186 7 35 318 49 334 7.38e-33 124
MS.gene022960.t1 MTR_6g065270 30.000 300 184 8 35 318 47 336 7.80e-33 124
MS.gene022960.t1 MTR_6g065340 29.795 292 175 6 35 318 60 329 1.81e-32 123
MS.gene022960.t1 MTR_6g065430 30.556 288 185 6 35 317 50 327 2.97e-32 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene022960.t1 AT3G48700 48.297 323 156 5 7 318 4 326 9.51e-104 307
MS.gene022960.t1 AT1G47480 46.250 320 160 5 1 318 1 310 1.24e-100 299
MS.gene022960.t1 AT2G03550 49.201 313 151 4 8 318 5 311 1.63e-100 298
MS.gene022960.t1 AT3G48690 47.335 319 160 4 7 318 4 321 1.09e-98 294
MS.gene022960.t1 AT1G19190 46.708 319 155 6 7 318 4 314 1.45e-95 286
MS.gene022960.t1 AT1G49660 45.860 314 167 3 7 317 4 317 6.27e-92 276
MS.gene022960.t1 AT1G49650 46.429 308 161 4 14 318 67 373 1.16e-88 270
MS.gene022960.t1 AT1G49640 45.130 308 159 6 14 317 12 313 5.18e-85 259
MS.gene022960.t1 AT1G68620 35.625 320 185 8 8 318 23 330 1.95e-53 178
MS.gene022960.t1 AT5G16080 35.738 305 179 8 8 303 28 324 1.78e-52 176
MS.gene022960.t1 AT5G06570 34.783 322 196 7 7 318 9 326 1.03e-43 153
MS.gene022960.t1 AT5G06570 34.783 322 196 7 7 318 9 326 1.03e-43 153
MS.gene022960.t1 AT5G06570 34.783 322 196 7 7 318 24 341 1.61e-43 153
MS.gene022960.t1 AT5G06570 34.783 322 196 7 7 318 24 341 1.61e-43 153
MS.gene022960.t1 AT2G45600 32.399 321 186 10 16 322 16 319 1.57e-39 142
MS.gene022960.t1 AT3G05120 32.026 306 178 8 33 321 53 345 1.15e-36 135
MS.gene022960.t1 AT5G62180 32.550 298 174 10 35 317 38 323 1.28e-36 134
MS.gene022960.t1 AT5G27320 30.820 305 183 8 33 322 53 344 8.27e-36 132
MS.gene022960.t1 AT2G45610 31.229 301 182 10 33 318 34 324 3.46e-34 127
MS.gene022960.t1 AT3G63010 36.493 211 118 5 75 279 106 306 1.89e-32 124
MS.gene022960.t1 AT5G23530 30.068 296 179 10 33 318 50 327 1.50e-30 118

Find 83 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACAAAGCTTTATGAGATTT+TGG 0.142481 7.2:-48335875 None:intergenic
ATCAACAGTTACGTAGATTT+TGG 0.160744 7.2:+48335425 MS.gene022960:CDS
TCCGGGTAAGGATAAGAATT+TGG 0.212125 7.2:+48335691 MS.gene022960:CDS
GTTGGGTTGTAAGAATGTTT+TGG 0.280166 7.2:+48335718 MS.gene022960:CDS
GGATAAGAATTTGGGGAGGT+TGG 0.307714 7.2:+48335700 MS.gene022960:CDS
TTGGATTCTACGTTTGTTGT+TGG 0.322208 7.2:-48335089 None:intergenic
CCGGGTAAGGATAAGAATTT+GGG 0.325474 7.2:+48335692 MS.gene022960:CDS
CCTTACCCGGATTCAATAAC+AGG 0.334611 7.2:-48335679 None:intergenic
TTCTTTGCAGGAGACAGTTC+TGG 0.335239 7.2:+48335455 MS.gene022960:CDS
GGATAGAGGTTGGTATTATA+AGG 0.336514 7.2:+48335769 MS.gene022960:CDS
GTTTGTTTGTCCAACAAGTT+CGG 0.342105 7.2:+48335646 MS.gene022960:CDS
TTTGTTTGTCCAACAAGTTC+GGG 0.342906 7.2:+48335647 MS.gene022960:CDS
GATAAGAATTTGGGGAGGTT+GGG 0.344863 7.2:+48335701 MS.gene022960:CDS
TTCGTCTGAGCTTGAATTCA+TGG 0.358656 7.2:-48334973 None:intergenic
CGATGACCTGTTATTGAATC+CGG 0.364669 7.2:+48335673 MS.gene022960:CDS
TAACCTTGAAGGGATTGTTT+TGG 0.366201 7.2:+48335535 MS.gene022960:CDS
GTTTGGAAATTCATCGTTGA+TGG 0.367756 7.2:-48335168 None:intergenic
ACTGCATGCAAGATTAATAA+AGG 0.374217 7.2:-48335918 None:intergenic
GCTTCTCATTTGCATGGAAA+TGG 0.377923 7.2:+48335389 MS.gene022960:CDS
TATTAATCTTGCATGCAGTT+TGG 0.381108 7.2:+48335922 MS.gene022960:CDS
CTATAGGAAGAGGATGTTCC+GGG 0.390821 7.2:-48335331 None:intergenic
GCTATAGGAAGAGGATGTTC+CGG 0.399486 7.2:-48335332 None:intergenic
AAATTCATCGTTGATGGGTA+TGG 0.404848 7.2:-48335162 None:intergenic
ATTCATGGACTTCCCTCAAA+TGG 0.406576 7.2:+48335363 MS.gene022960:CDS
CATGAATCTTCGTATGCTAT+AGG 0.408799 7.2:-48335347 None:intergenic
CTATAGCATACGAAGATTCA+TGG 0.419285 7.2:+48335348 MS.gene022960:CDS
ACAAAAGATAAATATTGTTC+AGG 0.420042 7.2:-48335608 None:intergenic
CCCAAATTCTTATCCTTACC+CGG 0.420067 7.2:-48335692 None:intergenic
TTTGTTGTTGGATCAAAAGA+TGG 0.442349 7.2:-48335077 None:intergenic
TTGCTTGAGAAAAGTGGTTA+TGG 0.445976 7.2:+48335794 MS.gene022960:CDS
TTATCATTGGTGAGAGATCA+AGG 0.455963 7.2:-48335001 None:intergenic
TTGTGGTATGTTGGTGAGAA+AGG 0.458779 7.2:-48335245 None:intergenic
GGGTATGGGAATGAAGATTC+TGG 0.461502 7.2:-48335147 None:intergenic
CCTCTCCTTGTTTACTTCCA+CGG 0.464719 7.2:+48335200 MS.gene022960:CDS
GAACCAAAACAATCCCTTCA+AGG 0.467598 7.2:-48335538 None:intergenic
GTTGGAACTGAAGGGCTTCA+AGG 0.471170 7.2:+48335509 MS.gene022960:CDS
TGCAAACATTGCACATCAAA+TGG 0.473268 7.2:+48335478 MS.gene022960:CDS
TCATCGGATCCCGAACTTGT+TGG 0.477950 7.2:-48335656 None:intergenic
CTTCAAGGGATTAACCTTGA+AGG 0.479794 7.2:+48335524 MS.gene022960:CDS
TTGAGGTAATTGTGGTATGT+TGG 0.482197 7.2:-48335254 None:intergenic
AAGGAGTTGCTTGAGAAAAG+TGG 0.492040 7.2:+48335788 MS.gene022960:CDS
CTTGTTTACTTCCACGGTGG+TGG 0.494455 7.2:+48335206 MS.gene022960:CDS
AATGAGAAGCCACCCATTTG+AGG 0.499502 7.2:-48335376 None:intergenic
TTCAAGGGATTAACCTTGAA+GGG 0.506683 7.2:+48335525 MS.gene022960:CDS
ATTTGATGAAGGATAGAGGT+TGG 0.508797 7.2:+48335759 MS.gene022960:CDS
GCTATTCGTGTTGGAACTGA+AGG 0.510323 7.2:+48335500 MS.gene022960:CDS
CCTGTTATTGAATCCGGGTA+AGG 0.511006 7.2:+48335679 MS.gene022960:CDS
TCTTCGTATGCTATAGGAAG+AGG 0.511339 7.2:-48335341 None:intergenic
AATGATTTGATGAAGGATAG+AGG 0.514472 7.2:+48335755 MS.gene022960:CDS
TTCATGGACTTCCCTCAAAT+GGG 0.514492 7.2:+48335364 MS.gene022960:CDS
AATTCATCGTTGATGGGTAT+GGG 0.527547 7.2:-48335161 None:intergenic
ATGAGAAGCCACCCATTTGA+GGG 0.529157 7.2:-48335375 None:intergenic
CAATGGTGTTGAGGTAATTG+TGG 0.531357 7.2:-48335262 None:intergenic
TTGGAACTGAAGGGCTTCAA+GGG 0.535779 7.2:+48335510 MS.gene022960:CDS
TTTGGAAATTCATCGTTGAT+GGG 0.536977 7.2:-48335167 None:intergenic
CATCAAATGGCTATTCGTGT+TGG 0.537039 7.2:+48335491 MS.gene022960:CDS
TCGTCTGAGCTTGAATTCAT+GGG 0.539264 7.2:-48334972 None:intergenic
ATGGAAATGGTTCTGATGAA+TGG 0.551575 7.2:+48335402 MS.gene022960:CDS
GTTGATGTGATTGAGACAAA+AGG 0.552670 7.2:+48335824 MS.gene022960:CDS
TGGGTGGCTTCTCATTTGCA+TGG 0.555925 7.2:+48335383 MS.gene022960:CDS
CTTGAGAAACAATGGTGTTG+AGG 0.555979 7.2:-48335271 None:intergenic
TGCTGAGAATGATTTGATGA+AGG 0.557670 7.2:+48335748 MS.gene022960:CDS
TACATTAGCTTGAGAAACAA+TGG 0.567689 7.2:-48335279 None:intergenic
GATGACCTGTTATTGAATCC+GGG 0.578029 7.2:+48335674 MS.gene022960:CDS
CTCCTTGTTTACTTCCACGG+TGG 0.586065 7.2:+48335203 MS.gene022960:CDS
ATGGACTTCCCTCAAATGGG+TGG 0.592925 7.2:+48335367 MS.gene022960:CDS
GGTCACATAGAAAGACTCTC+AGG 0.595927 7.2:+48335038 MS.gene022960:CDS
CGGATTCAATAACAGGTCAT+CGG 0.596111 7.2:-48335672 None:intergenic
CTATTCGTGTTGGAACTGAA+GGG 0.601762 7.2:+48335501 MS.gene022960:CDS
CACCACCGTGGAAGTAAACA+AGG 0.602557 7.2:-48335205 None:intergenic
ATGATAAAAGTCTACAAAGA+CGG 0.607569 7.2:+48335017 MS.gene022960:CDS
AGTTGATTACAGAAGAGCCC+CGG 0.613495 7.2:+48335313 MS.gene022960:CDS
GTTGTTGGATCAAAAGATGG+AGG 0.615289 7.2:-48335074 None:intergenic
AAAAGATGGAGGTACAATGT+CGG 0.623683 7.2:-48335063 None:intergenic
CTTGAGAAAAGTGGTTATGG+TGG 0.628747 7.2:+48335797 MS.gene022960:CDS
CCGTGGAAGTAAACAAGGAG+AGG 0.629043 7.2:-48335200 None:intergenic
TGTGGAAAGAGTTGGATCTG+AGG 0.629593 7.2:+48335577 MS.gene022960:CDS
CGTGGAAGTAAACAAGGAGA+GGG 0.633922 7.2:-48335199 None:intergenic
GTGATTGAGACAAAAGGTGA+AGG 0.667699 7.2:+48335830 MS.gene022960:CDS
TATAGGAAGAGGATGTTCCG+GGG 0.736742 7.2:-48335330 None:intergenic
GTAAGGATAAGAATTTGGGG+AGG 0.741992 7.2:+48335696 MS.gene022960:CDS
CGGGTAAGGATAAGAATTTG+GGG 0.748700 7.2:+48335693 MS.gene022960:CDS
CTACGCAGAAACCACCACCG+TGG 0.793795 7.2:-48335217 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAAGATAAATATTGTTC+AGG - chr7.2:48335611-48335630 None:intergenic 20.0%
!!! TATCTTTTGTGGATAATTTA+TGG + chr7.2:48335621-48335640 MS.gene022960:CDS 20.0%
!!! TGAACAATATTTATCTTTTG+TGG + chr7.2:48335610-48335629 MS.gene022960:CDS 20.0%
! ATGATAAAAGTCTACAAAGA+CGG + chr7.2:48335017-48335036 MS.gene022960:CDS 25.0%
!! TCTTTGTAGACTTTTATCAT+TGG - chr7.2:48335017-48335036 None:intergenic 25.0%
AATGATTTGATGAAGGATAG+AGG + chr7.2:48335755-48335774 MS.gene022960:CDS 30.0%
ACTGCATGCAAGATTAATAA+AGG - chr7.2:48335921-48335940 None:intergenic 30.0%
TATTAATCTTGCATGCAGTT+TGG + chr7.2:48335922-48335941 MS.gene022960:CDS 30.0%
TTTGGAAATTCATCGTTGAT+GGG - chr7.2:48335170-48335189 None:intergenic 30.0%
! ATCAACAGTTACGTAGATTT+TGG + chr7.2:48335425-48335444 MS.gene022960:CDS 30.0%
! CTTTTGTGGATAATTTATGG+CGG + chr7.2:48335624-48335643 MS.gene022960:CDS 30.0%
! TACATTAGCTTGAGAAACAA+TGG - chr7.2:48335282-48335301 None:intergenic 30.0%
! TTTGGAAAAGTTTTCTTTGC+AGG + chr7.2:48335443-48335462 MS.gene022960:CDS 30.0%
!! GACAAAGCTTTATGAGATTT+TGG - chr7.2:48335878-48335897 None:intergenic 30.0%
!! TTTGGTTCATGCATTCTTTT+GGG + chr7.2:48335553-48335572 MS.gene022960:CDS 30.0%
!! TTTGTTGTTGGATCAAAAGA+TGG - chr7.2:48335080-48335099 None:intergenic 30.0%
!!! TTTTGAGATGAGAATGTCTT+TGG - chr7.2:48335111-48335130 None:intergenic 30.0%
!!! TTTTGGTTCATGCATTCTTT+TGG + chr7.2:48335552-48335571 MS.gene022960:CDS 30.0%
ATTTGATGAAGGATAGAGGT+TGG + chr7.2:48335759-48335778 MS.gene022960:CDS 35.0%
CATGAATCTTCGTATGCTAT+AGG - chr7.2:48335350-48335369 None:intergenic 35.0%
CTATAGCATACGAAGATTCA+TGG + chr7.2:48335348-48335367 MS.gene022960:CDS 35.0%
GTTGATGTGATTGAGACAAA+AGG + chr7.2:48335824-48335843 MS.gene022960:CDS 35.0%
GTTTGGAAATTCATCGTTGA+TGG - chr7.2:48335171-48335190 None:intergenic 35.0%
GTTTGTTTGTCCAACAAGTT+CGG + chr7.2:48335646-48335665 MS.gene022960:CDS 35.0%
TGCAAACATTGCACATCAAA+TGG + chr7.2:48335478-48335497 MS.gene022960:CDS 35.0%
TGCTGAGAATGATTTGATGA+AGG + chr7.2:48335748-48335767 MS.gene022960:CDS 35.0%
TTATCATTGGTGAGAGATCA+AGG - chr7.2:48335004-48335023 None:intergenic 35.0%
TTCAAGGGATTAACCTTGAA+GGG + chr7.2:48335525-48335544 MS.gene022960:CDS 35.0%
TTGAGGTAATTGTGGTATGT+TGG - chr7.2:48335257-48335276 None:intergenic 35.0%
TTGCTTGAGAAAAGTGGTTA+TGG + chr7.2:48335794-48335813 MS.gene022960:CDS 35.0%
TTTGTTTGTCCAACAAGTTC+GGG + chr7.2:48335647-48335666 MS.gene022960:CDS 35.0%
! AAAAGATGGAGGTACAATGT+CGG - chr7.2:48335066-48335085 None:intergenic 35.0%
! AAATTCATCGTTGATGGGTA+TGG - chr7.2:48335165-48335184 None:intergenic 35.0%
! AATTCATCGTTGATGGGTAT+GGG - chr7.2:48335164-48335183 None:intergenic 35.0%
! TAACCTTGAAGGGATTGTTT+TGG + chr7.2:48335535-48335554 MS.gene022960:CDS 35.0%
! TTGGTTCATGCATTCTTTTG+GGG + chr7.2:48335554-48335573 MS.gene022960:CDS 35.0%
!! ATGGAAATGGTTCTGATGAA+TGG + chr7.2:48335402-48335421 MS.gene022960:CDS 35.0%
!! GGATAGAGGTTGGTATTATA+AGG + chr7.2:48335769-48335788 MS.gene022960:CDS 35.0%
!! GTTGGGTTGTAAGAATGTTT+TGG + chr7.2:48335718-48335737 MS.gene022960:CDS 35.0%
!! TTGGATTCTACGTTTGTTGT+TGG - chr7.2:48335092-48335111 None:intergenic 35.0%
AAGGAGTTGCTTGAGAAAAG+TGG + chr7.2:48335788-48335807 MS.gene022960:CDS 40.0%
ATTCATGGACTTCCCTCAAA+TGG + chr7.2:48335363-48335382 MS.gene022960:CDS 40.0%
CATCAAATGGCTATTCGTGT+TGG + chr7.2:48335491-48335510 MS.gene022960:CDS 40.0%
CCCAAATTCTTATCCTTACC+CGG - chr7.2:48335695-48335714 None:intergenic 40.0%
CCGGGTAAGGATAAGAATTT+GGG + chr7.2:48335692-48335711 MS.gene022960:CDS 40.0%
CGATGACCTGTTATTGAATC+CGG + chr7.2:48335673-48335692 MS.gene022960:CDS 40.0%
CGGATTCAATAACAGGTCAT+CGG - chr7.2:48335675-48335694 None:intergenic 40.0%
CGGGTAAGGATAAGAATTTG+GGG + chr7.2:48335693-48335712 MS.gene022960:CDS 40.0%
CTATTCGTGTTGGAACTGAA+GGG + chr7.2:48335501-48335520 MS.gene022960:CDS 40.0%
CTTCAAGGGATTAACCTTGA+AGG + chr7.2:48335524-48335543 MS.gene022960:CDS 40.0%
CTTGAGAAAAGTGGTTATGG+TGG + chr7.2:48335797-48335816 MS.gene022960:CDS 40.0%
GAACCAAAACAATCCCTTCA+AGG - chr7.2:48335541-48335560 None:intergenic 40.0%
GATAAGAATTTGGGGAGGTT+GGG + chr7.2:48335701-48335720 MS.gene022960:CDS 40.0%
GATGACCTGTTATTGAATCC+GGG + chr7.2:48335674-48335693 MS.gene022960:CDS 40.0%
GCTTCTCATTTGCATGGAAA+TGG + chr7.2:48335389-48335408 MS.gene022960:CDS 40.0%
GTAAGGATAAGAATTTGGGG+AGG + chr7.2:48335696-48335715 MS.gene022960:CDS 40.0%
GTGATTGAGACAAAAGGTGA+AGG + chr7.2:48335830-48335849 MS.gene022960:CDS 40.0%
GTTGTTGGATCAAAAGATGG+AGG - chr7.2:48335077-48335096 None:intergenic 40.0%
TCCGGGTAAGGATAAGAATT+TGG + chr7.2:48335691-48335710 MS.gene022960:CDS 40.0%
TCTTCGTATGCTATAGGAAG+AGG - chr7.2:48335344-48335363 None:intergenic 40.0%
TTCATGGACTTCCCTCAAAT+GGG + chr7.2:48335364-48335383 MS.gene022960:CDS 40.0%
! AAACAAGGAGAGGGAGTTTT+TGG - chr7.2:48335193-48335212 None:intergenic 40.0%
! CAATGGTGTTGAGGTAATTG+TGG - chr7.2:48335265-48335284 None:intergenic 40.0%
! CTTGAGAAACAATGGTGTTG+AGG - chr7.2:48335274-48335293 None:intergenic 40.0%
! TTGTGGTATGTTGGTGAGAA+AGG - chr7.2:48335248-48335267 None:intergenic 40.0%
AATGAGAAGCCACCCATTTG+AGG - chr7.2:48335379-48335398 None:intergenic 45.0%
AGTTGATTACAGAAGAGCCC+CGG + chr7.2:48335313-48335332 MS.gene022960:CDS 45.0%
ATGAGAAGCCACCCATTTGA+GGG - chr7.2:48335378-48335397 None:intergenic 45.0%
CCTGTTATTGAATCCGGGTA+AGG + chr7.2:48335679-48335698 MS.gene022960:CDS 45.0%
CCTTACCCGGATTCAATAAC+AGG - chr7.2:48335682-48335701 None:intergenic 45.0%
CGTGGAAGTAAACAAGGAGA+GGG - chr7.2:48335202-48335221 None:intergenic 45.0%
CTATAGGAAGAGGATGTTCC+GGG - chr7.2:48335334-48335353 None:intergenic 45.0%
GCTATAGGAAGAGGATGTTC+CGG - chr7.2:48335335-48335354 None:intergenic 45.0%
GCTATTCGTGTTGGAACTGA+AGG + chr7.2:48335500-48335519 MS.gene022960:CDS 45.0%
GGATAAGAATTTGGGGAGGT+TGG + chr7.2:48335700-48335719 MS.gene022960:CDS 45.0%
GGGTATGGGAATGAAGATTC+TGG - chr7.2:48335150-48335169 None:intergenic 45.0%
GGTCACATAGAAAGACTCTC+AGG + chr7.2:48335038-48335057 MS.gene022960:CDS 45.0%
TATAGGAAGAGGATGTTCCG+GGG - chr7.2:48335333-48335352 None:intergenic 45.0%
TGTGGAAAGAGTTGGATCTG+AGG + chr7.2:48335577-48335596 MS.gene022960:CDS 45.0%
TTCTTTGCAGGAGACAGTTC+TGG + chr7.2:48335455-48335474 MS.gene022960:CDS 45.0%
TTGGAACTGAAGGGCTTCAA+GGG + chr7.2:48335510-48335529 MS.gene022960:CDS 45.0%
! CCTCTCCTTGTTTACTTCCA+CGG + chr7.2:48335200-48335219 MS.gene022960:CDS 45.0%
!!! AGGAGAGGGAGTTTTTGGTT+TGG - chr7.2:48335188-48335207 None:intergenic 45.0%
!!! TCATGCATTCTTTTGGGGTG+TGG + chr7.2:48335559-48335578 MS.gene022960:CDS 45.0%
!!! TTTTGGGGTGTGGAAAGAGT+TGG + chr7.2:48335569-48335588 MS.gene022960:CDS 45.0%
ATGGACTTCCCTCAAATGGG+TGG + chr7.2:48335367-48335386 MS.gene022960:CDS 50.0%
CACCACCGTGGAAGTAAACA+AGG - chr7.2:48335208-48335227 None:intergenic 50.0%
CCGTGGAAGTAAACAAGGAG+AGG - chr7.2:48335203-48335222 None:intergenic 50.0%
CTTGTTTACTTCCACGGTGG+TGG + chr7.2:48335206-48335225 MS.gene022960:CDS 50.0%
GTTGGAACTGAAGGGCTTCA+AGG + chr7.2:48335509-48335528 MS.gene022960:CDS 50.0%
TCATCGGATCCCGAACTTGT+TGG - chr7.2:48335659-48335678 None:intergenic 50.0%
TGGGTGGCTTCTCATTTGCA+TGG + chr7.2:48335383-48335402 MS.gene022960:CDS 50.0%
! CTCCTTGTTTACTTCCACGG+TGG + chr7.2:48335203-48335222 MS.gene022960:CDS 50.0%
CTACGCAGAAACCACCACCG+TGG - chr7.2:48335220-48335239 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 48334975 48335949 48334975 ID=MS.gene022960
chr7.2 mRNA 48334975 48335949 48334975 ID=MS.gene022960.t1;Parent=MS.gene022960
chr7.2 exon 48334975 48335949 48334975 ID=MS.gene022960.t1.exon1;Parent=MS.gene022960.t1
chr7.2 CDS 48334975 48335949 48334975 ID=cds.MS.gene022960.t1;Parent=MS.gene022960.t1
Gene Sequence

>MS.gene022960

ATGAATTCAAGCTCAGACGAAGTCGTCCTTGATCTCTCACCAATGATAAAAGTCTACAAAGACGGTCACATAGAAAGACTCTCAGGATCCGACATTGTACCTCCATCTTTTGATCCAACAACAAACGTAGAATCCAAAGACATTCTCATCTCAAAAGACAAAAACATATCAGCCAGAATCTTCATTCCCATACCCATCAACGATGAATTTCCAAACCAAAAACTCCCTCTCCTTGTTTACTTCCACGGTGGTGGTTTCTGCGTAGAAACACCTTTCTCACCAACATACCACAATTACCTCAACACCATTGTTTCTCAAGCTAATGTAATCGCTGTTTCAGTTGATTACAGAAGAGCCCCGGAACATCCTCTTCCTATAGCATACGAAGATTCATGGACTTCCCTCAAATGGGTGGCTTCTCATTTGCATGGAAATGGTTCTGATGAATGGATCAACAGTTACGTAGATTTTGGAAAAGTTTTCTTTGCAGGAGACAGTTCTGGTGCAAACATTGCACATCAAATGGCTATTCGTGTTGGAACTGAAGGGCTTCAAGGGATTAACCTTGAAGGGATTGTTTTGGTTCATGCATTCTTTTGGGGTGTGGAAAGAGTTGGATCTGAGGCTGAGAAACCTGAACAATATTTATCTTTTGTGGATAATTTATGGCGGTTTGTTTGTCCAACAAGTTCGGGATCCGATGACCTGTTATTGAATCCGGGTAAGGATAAGAATTTGGGGAGGTTGGGTTGTAAGAATGTTTTGGTTTGTGTTGCTGAGAATGATTTGATGAAGGATAGAGGTTGGTATTATAAGGAGTTGCTTGAGAAAAGTGGTTATGGTGGTATTGTTGATGTGATTGAGACAAAAGGTGAAGGACATGTTTTTCATCTCTTTAATCCAAAATCTCATAAAGCTTTGTCTTTGCTTAAGCAAATTGTTTCCTTTATTAATCTTGCATGCAGTTTGGCATAG
Protein sequence

>MS.gene022960.t1

MNSSSDEVVLDLSPMIKVYKDGHIERLSGSDIVPPSFDPTTNVESKDILISKDKNISARIFIPIPINDEFPNQKLPLLVYFHGGGFCVETPFSPTYHNYLNTIVSQANVIAVSVDYRRAPEHPLPIAYEDSWTSLKWVASHLHGNGSDEWINSYVDFGKVFFAGDSSGANIAHQMAIRVGTEGLQGINLEGIVLVHAFFWGVERVGSEAEKPEQYLSFVDNLWRFVCPTSSGSDDLLLNPGKDKNLGRLGCKNVLVCVAENDLMKDRGWYYKELLEKSGYGGIVDVIETKGEGHVFHLFNPKSHKALSLLKQIVSFINLACSLA