AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39627

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39627.t1 MTR_4g086510 96.573 321 11 0 1 321 1 321 0.0 640
MS.gene39627.t1 MTR_7g056207 85.759 316 45 0 2 317 34 349 0.0 568
MS.gene39627.t1 MTR_4g086480 64.907 322 106 3 1 318 1 319 1.41e-161 453
MS.gene39627.t1 MTR_4g086470 62.539 323 115 3 1 320 1 320 1.31e-145 413
MS.gene39627.t1 MTR_5g005850 45.015 331 163 9 1 317 3 328 4.28e-95 285
MS.gene39627.t1 MTR_4g086540 45.253 316 150 4 2 317 12 304 1.11e-93 281
MS.gene39627.t1 MTR_3g101420 43.810 315 163 6 9 317 8 314 2.14e-93 280
MS.gene39627.t1 MTR_1g105020 44.172 326 169 8 1 317 1 322 9.79e-91 273
MS.gene39627.t1 MTR_3g450680 42.202 327 175 7 2 318 10 332 3.45e-83 254
MS.gene39627.t1 MTR_8g040860 40.752 319 178 7 7 318 15 329 1.52e-76 238
MS.gene39627.t1 MTR_5g005920 38.415 328 191 8 2 319 6 332 7.60e-76 236
MS.gene39627.t1 MTR_5g005900 41.337 329 178 8 1 317 1 326 1.64e-75 235
MS.gene39627.t1 MTR_1g104930 41.121 321 176 7 4 317 8 322 6.05e-71 223
MS.gene39627.t1 MTR_7g051020 40.187 321 182 7 4 317 8 325 1.60e-69 219
MS.gene39627.t1 MTR_1g104933 40.506 316 173 7 8 317 10 316 3.38e-62 200
MS.gene39627.t1 MTR_1g111280 40.065 307 160 9 8 300 26 322 8.93e-61 198
MS.gene39627.t1 MTR_1g012430 39.117 317 176 9 8 318 3 308 1.60e-58 191
MS.gene39627.t1 MTR_4g050140 34.462 325 192 8 5 318 2 316 1.73e-55 183
MS.gene39627.t1 MTR_7g406880 36.928 306 167 9 15 299 28 328 2.23e-55 184
MS.gene39627.t1 MTR_7g107040 33.125 320 200 7 8 320 7 319 1.46e-46 160
MS.gene39627.t1 MTR_1g102160 35.231 281 157 7 16 279 19 291 3.65e-45 156
MS.gene39627.t1 MTR_6g464120 36.585 287 158 10 21 294 29 304 8.81e-44 157
MS.gene39627.t1 MTR_8g035520 34.936 312 185 8 16 317 21 324 1.03e-43 153
MS.gene39627.t1 MTR_8g035540 34.494 316 185 9 16 317 9 316 9.06e-43 150
MS.gene39627.t1 MTR_6g464280 34.831 267 152 7 35 288 38 295 1.36e-42 150
MS.gene39627.t1 MTR_6g464510 34.091 308 177 10 24 317 31 326 7.01e-42 148
MS.gene39627.t1 MTR_1g102170 36.059 269 149 9 21 276 43 301 2.03e-41 147
MS.gene39627.t1 MTR_6g464320 31.650 297 179 9 35 317 39 325 2.66e-41 146
MS.gene39627.t1 MTR_6g065110 35.274 292 169 8 39 319 54 336 5.20e-41 146
MS.gene39627.t1 MTR_6g065120 33.784 296 173 8 35 317 50 335 4.12e-40 144
MS.gene39627.t1 MTR_0007s0520 30.746 335 198 11 1 320 12 327 2.71e-39 141
MS.gene39627.t1 MTR_3g012440 30.029 343 208 9 4 318 3 341 3.36e-39 141
MS.gene39627.t1 MTR_6g065340 31.959 291 168 6 35 317 60 328 1.88e-36 134
MS.gene39627.t1 MTR_1g089310 32.704 318 178 11 21 317 38 340 3.22e-36 133
MS.gene39627.t1 MTR_6g065430 31.270 307 191 8 21 317 31 327 3.27e-36 133
MS.gene39627.t1 MTR_1g089310 32.704 318 178 11 21 317 54 356 4.11e-36 133
MS.gene39627.t1 MTR_6g065270 31.208 298 181 7 35 317 47 335 9.33e-36 132
MS.gene39627.t1 MTR_7g093950 33.010 309 168 11 33 317 53 346 2.29e-35 131
MS.gene39627.t1 MTR_8g035500 30.169 295 184 8 35 317 33 317 5.41e-35 129
MS.gene39627.t1 MTR_6g065370 30.272 294 185 6 35 317 49 333 2.01e-34 129
MS.gene39627.t1 MTR_6g065400 30.612 294 184 6 35 317 49 333 2.12e-34 128
MS.gene39627.t1 MTR_1g082210 30.233 301 181 8 33 317 53 340 9.16e-34 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39627.t1 AT3G48700 50.152 329 150 6 1 318 1 326 2.30e-109 321
MS.gene39627.t1 AT3G48690 50.920 326 147 7 1 318 1 321 4.58e-107 315
MS.gene39627.t1 AT2G03550 50.000 312 148 4 8 317 5 310 2.29e-106 313
MS.gene39627.t1 AT1G19190 49.379 322 151 7 1 318 1 314 7.44e-103 304
MS.gene39627.t1 AT1G47480 46.729 321 159 6 1 319 1 311 6.50e-102 302
MS.gene39627.t1 AT1G49660 46.349 315 166 3 6 317 3 317 3.26e-94 282
MS.gene39627.t1 AT1G49650 47.231 307 158 4 14 317 67 372 3.60e-91 276
MS.gene39627.t1 AT1G49640 47.078 308 153 6 14 317 12 313 1.63e-88 268
MS.gene39627.t1 AT1G68620 36.562 320 184 8 8 319 23 331 2.09e-56 186
MS.gene39627.t1 AT5G16080 36.025 322 186 10 8 317 28 341 2.37e-54 181
MS.gene39627.t1 AT2G45600 32.492 317 184 9 16 318 16 316 7.18e-41 145
MS.gene39627.t1 AT5G06570 32.710 321 202 7 7 317 9 325 1.59e-38 139
MS.gene39627.t1 AT5G06570 32.710 321 202 7 7 317 9 325 1.59e-38 139
MS.gene39627.t1 AT5G06570 32.710 321 202 7 7 317 24 340 2.09e-38 139
MS.gene39627.t1 AT5G06570 32.710 321 202 7 7 317 24 340 2.09e-38 139
MS.gene39627.t1 AT5G62180 31.310 313 189 8 21 317 21 323 2.99e-38 138
MS.gene39627.t1 AT5G23530 31.987 297 170 10 33 317 50 326 1.21e-34 129
MS.gene39627.t1 AT3G05120 29.968 317 189 9 21 317 38 341 1.53e-34 129
MS.gene39627.t1 AT2G45610 31.847 314 195 9 16 317 17 323 1.56e-34 128
MS.gene39627.t1 AT5G27320 30.667 300 180 9 33 317 53 339 6.48e-34 127
MS.gene39627.t1 AT3G63010 33.333 249 147 7 75 317 106 341 4.93e-33 125

Find 86 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAACCGTTATGCAGATTT+TGG 0.137747 4.2:+24490385 MS.gene39627:CDS
TATCTTTGGCAGATAATTTA+TGG 0.167740 4.2:+24490581 MS.gene39627:CDS
TCCTGGAAAGGATAAGAATT+TGG 0.204845 4.2:+24490651 MS.gene39627:CDS
CCCAAATTCTTATCCTTTCC+AGG 0.230563 4.2:-24490652 None:intergenic
GAAGTAGCGTTATCACAATT+TGG 0.238391 4.2:-24490835 None:intergenic
AAGGAGTTGCTTGAGAAAAT+TGG 0.262640 4.2:+24490748 MS.gene39627:CDS
TTTCGAGATGAGAATGTCTT+TGG 0.280568 4.2:-24490068 None:intergenic
GAAATCTGAACATTTATCTT+TGG 0.318877 4.2:+24490567 MS.gene39627:CDS
TTGGATTCTACGTTTGTTGT+TGG 0.322208 4.2:-24490049 None:intergenic
CCTGGAAAGGATAAGAATTT+GGG 0.324352 4.2:+24490652 MS.gene39627:CDS
AGATTCTGACGGATATGTTT+TGG 0.326819 4.2:-24490093 None:intergenic
GGACAGAGGTTGGTATTATA+AGG 0.329561 4.2:+24490729 MS.gene39627:CDS
GGATAAGAATTTGGGGAGGT+TGG 0.340905 4.2:+24490660 MS.gene39627:CDS
GTTGGGTTGTAAGAGAGTTT+TGG 0.343853 4.2:+24490678 MS.gene39627:CDS
TTTGTTTGTCCAACAAGTTC+GGG 0.347347 4.2:+24490607 MS.gene39627:CDS
AATTGATCGTTGTTGGGTTT+GGG 0.349087 4.2:-24490121 None:intergenic
GCTATAGGAAGAGGATGTTC+TGG 0.353632 4.2:-24490292 None:intergenic
TTTGGAAAAGTGTTCTTTGC+AGG 0.354718 4.2:+24490403 MS.gene39627:CDS
TAACCTTGAAGGGATTGTTT+TGG 0.366201 4.2:+24490495 MS.gene39627:CDS
AAATTGATCGTTGTTGGGTT+TGG 0.376453 4.2:-24490122 None:intergenic
GATAAGAATTTGGGGAGGTT+GGG 0.378686 4.2:+24490661 MS.gene39627:CDS
GTTTGTTTGTCCAACAAGTT+CGG 0.387947 4.2:+24490606 MS.gene39627:CDS
TTAACCACTATGCTTAATAA+AGG 0.388861 4.2:-24490878 None:intergenic
GTTTGGAAATTGATCGTTGT+TGG 0.395971 4.2:-24490128 None:intergenic
ATTCATGGACTTCCCTCAAA+TGG 0.399432 4.2:+24490323 MS.gene39627:CDS
GGTTCTCATTTACATGGAAA+TGG 0.399768 4.2:+24490349 MS.gene39627:CDS
CATGAATCTTCGTATGCTAT+AGG 0.408799 4.2:-24490307 None:intergenic
CTATAGCATACGAAGATTCA+TGG 0.419285 4.2:+24490308 MS.gene39627:CDS
TTGCTTGAGAAAATTGGTTA+TGG 0.425920 4.2:+24490754 MS.gene39627:CDS
TAATCATGGGTGAGAGATCA+AGG 0.441310 4.2:-24489961 None:intergenic
TTTGTTGTTGGATCAAAAGA+TGG 0.442349 4.2:-24490037 None:intergenic
CCTCTCCTTGTTTACTTCCA+CGG 0.464719 4.2:+24490160 MS.gene39627:CDS
CTATAGGAAGAGGATGTTCT+GGG 0.466651 4.2:-24490291 None:intergenic
GAACCAAAACAATCCCTTCA+AGG 0.467598 4.2:-24490498 None:intergenic
TCGTTAGAGCTTGAATCCAT+TGG 0.469914 4.2:-24489932 None:intergenic
GTTGGAACTGAAGGGCTTCA+AGG 0.471170 4.2:+24490469 MS.gene39627:CDS
TGTTGAAAGGGTTGGATCTG+AGG 0.476216 4.2:+24490537 MS.gene39627:CDS
CTTCAAGGGATTAACCTTGA+AGG 0.479794 4.2:+24490484 MS.gene39627:CDS
GCTTCCTTTATTAAGCATAG+TGG 0.485822 4.2:+24490874 MS.gene39627:CDS
CTTGTTTACTTCCACGGTGG+TGG 0.494455 4.2:+24490166 MS.gene39627:CDS
TTGTGGTATGGTGGTGAGAA+AGG 0.497082 4.2:-24490205 None:intergenic
ATGGAAATGGTTCTGATGAA+TGG 0.500867 4.2:+24490362 MS.gene39627:CDS
TCATCGGATCCCGAACTTGT+TGG 0.500915 4.2:-24490616 None:intergenic
TTTGGAAATTGATCGTTGTT+GGG 0.501578 4.2:-24490127 None:intergenic
GGTCACATAGAAAGACTCAT+AGG 0.504720 4.2:+24489998 MS.gene39627:CDS
TTCAAGGGATTAACCTTGAA+GGG 0.506683 4.2:+24490485 MS.gene39627:CDS
CCTTTCCAGGATTCAAAAGC+GGG 0.506964 4.2:-24490639 None:intergenic
AATGAGAACCGACCCATTTG+AGG 0.508046 4.2:-24490336 None:intergenic
GCTATTCGTGTTGGAACTGA+AGG 0.508303 4.2:+24490460 MS.gene39627:CDS
TCTTCGTATGCTATAGGAAG+AGG 0.511339 4.2:-24490301 None:intergenic
TGCTGAGAATGATTCGTTGA+AGG 0.512607 4.2:+24490708 MS.gene39627:CDS
TGGGTCGGTTCTCATTTACA+TGG 0.515529 4.2:+24490343 MS.gene39627:CDS
ATGATTAAAATCTACAAAGA+TGG 0.516689 4.2:+24489977 MS.gene39627:CDS
TTCATGGACTTCCCTCAAAT+GGG 0.516932 4.2:+24490324 MS.gene39627:CDS
CTTTAGAAACAATGGTGTTG+AGG 0.518105 4.2:-24490231 None:intergenic
CTTGAGAAAATTGGTTATGG+TGG 0.520361 4.2:+24490757 MS.gene39627:CDS
CAATGGTGTTGAGGAAATTG+TGG 0.524537 4.2:-24490222 None:intergenic
TTCTTTGCAGGAGACAGTGC+TGG 0.531069 4.2:+24490415 MS.gene39627:CDS
AGGATTCAAAAGCGGGTCAT+CGG 0.531320 4.2:-24490632 None:intergenic
ATTCGTTGAAGGACAGAGGT+TGG 0.532870 4.2:+24490719 MS.gene39627:CDS
TTGGAACTGAAGGGCTTCAA+GGG 0.535779 4.2:+24490470 MS.gene39627:CDS
CACATTAGCTTTAGAAACAA+TGG 0.549484 4.2:-24490239 None:intergenic
AAAAGATGGAGGTACGATGT+TGG 0.553050 4.2:-24490023 None:intergenic
CATCACATGGCTATTCGTGT+TGG 0.555895 4.2:+24490451 MS.gene39627:CDS
TGCAAACATTGCACATCACA+TGG 0.556025 4.2:+24490438 MS.gene39627:CDS
ATGAGAACCGACCCATTTGA+GGG 0.557631 4.2:-24490335 None:intergenic
AATTGGTTATGGTGGTGTTG+TGG 0.565299 4.2:+24490765 MS.gene39627:CDS
TGGACTTCCCTCAAATGGGT+CGG 0.583373 4.2:+24490328 MS.gene39627:CDS
CTCCTTGTTTACTTCCACGG+TGG 0.586065 4.2:+24490163 MS.gene39627:CDS
GTGGAAGTGATTGAGACAAA+AGG 0.600674 4.2:+24490784 MS.gene39627:CDS
CTATTCGTGTTGGAACTGAA+GGG 0.601762 4.2:+24490461 MS.gene39627:CDS
CACCACCGTGGAAGTAAACA+AGG 0.602557 4.2:-24490165 None:intergenic
TCCTTTCCAGGATTCAAAAG+CGG 0.605233 4.2:-24490640 None:intergenic
TTGAGGAAATTGTGGTATGG+TGG 0.607405 4.2:-24490214 None:intergenic
GTTGTTGGATCAAAAGATGG+AGG 0.615289 4.2:-24490034 None:intergenic
CCGTGGAAGTAAACAAGGAG+AGG 0.629043 4.2:-24490160 None:intergenic
CGTGGAAGTAAACAAGGAGA+GGG 0.633922 4.2:-24490159 None:intergenic
TTTGGGAATGAAGATTCTGA+CGG 0.635421 4.2:-24490104 None:intergenic
AATGATTCGTTGAAGGACAG+AGG 0.637660 4.2:+24490715 MS.gene39627:CDS
CTTTGGCAGATAATTTATGG+AGG 0.639376 4.2:+24490584 MS.gene39627:CDS
GTGATTGAGACAAAAGGTGA+AGG 0.640528 4.2:+24490790 MS.gene39627:CDS
GTGTTGAGGAAATTGTGGTA+TGG 0.652807 4.2:-24490217 None:intergenic
CTGGAAAGGATAAGAATTTG+GGG 0.670967 4.2:+24490653 MS.gene39627:CDS
GAAAGGATAAGAATTTGGGG+AGG 0.711471 4.2:+24490656 MS.gene39627:CDS
TATAGGAAGAGGATGTTCTG+GGG 0.732130 4.2:-24490290 None:intergenic
CTACGCAGAAACCACCACCG+TGG 0.793795 4.2:-24490177 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGATTAAAATCTACAAAGA+TGG + chr4.2:24489977-24489996 MS.gene39627:CDS 20.0%
!!! ATCTTTGTAGATTTTAATCA+TGG - chr4.2:24489978-24489997 None:intergenic 20.0%
!!! TCTTTGTAGATTTTAATCAT+GGG - chr4.2:24489977-24489996 None:intergenic 20.0%
! GAAATCTGAACATTTATCTT+TGG + chr4.2:24490567-24490586 MS.gene39627:CDS 25.0%
! TATCTTTGGCAGATAATTTA+TGG + chr4.2:24490581-24490600 MS.gene39627:CDS 25.0%
! TTAACCACTATGCTTAATAA+AGG - chr4.2:24490881-24490900 None:intergenic 25.0%
!!! TTTGGTTCATACATTCTTTT+GGG + chr4.2:24490513-24490532 MS.gene39627:CDS 25.0%
!!! TTTTGGTTCATACATTCTTT+TGG + chr4.2:24490512-24490531 MS.gene39627:CDS 25.0%
TTGCTTGAGAAAATTGGTTA+TGG + chr4.2:24490754-24490773 MS.gene39627:CDS 30.0%
TTTGGAAATTGATCGTTGTT+GGG - chr4.2:24490130-24490149 None:intergenic 30.0%
! CTTTTCCAAAATCTGCATAA+CGG - chr4.2:24490393-24490412 None:intergenic 30.0%
! TTGGTTCATACATTCTTTTG+GGG + chr4.2:24490514-24490533 MS.gene39627:CDS 30.0%
!! CACATTAGCTTTAGAAACAA+TGG - chr4.2:24490242-24490261 None:intergenic 30.0%
!! TTTGTTGTTGGATCAAAAGA+TGG - chr4.2:24490040-24490059 None:intergenic 30.0%
AAATTGATCGTTGTTGGGTT+TGG - chr4.2:24490125-24490144 None:intergenic 35.0%
AAGGAGTTGCTTGAGAAAAT+TGG + chr4.2:24490748-24490767 MS.gene39627:CDS 35.0%
AATTGATCGTTGTTGGGTTT+GGG - chr4.2:24490124-24490143 None:intergenic 35.0%
CATGAATCTTCGTATGCTAT+AGG - chr4.2:24490310-24490329 None:intergenic 35.0%
CCTGGAAAGGATAAGAATTT+GGG + chr4.2:24490652-24490671 MS.gene39627:CDS 35.0%
CTATAGCATACGAAGATTCA+TGG + chr4.2:24490308-24490327 MS.gene39627:CDS 35.0%
CTGGAAAGGATAAGAATTTG+GGG + chr4.2:24490653-24490672 MS.gene39627:CDS 35.0%
CTTGAGAAAATTGGTTATGG+TGG + chr4.2:24490757-24490776 MS.gene39627:CDS 35.0%
CTTTGGCAGATAATTTATGG+AGG + chr4.2:24490584-24490603 MS.gene39627:CDS 35.0%
GAAGTAGCGTTATCACAATT+TGG - chr4.2:24490838-24490857 None:intergenic 35.0%
GCTTCCTTTATTAAGCATAG+TGG + chr4.2:24490874-24490893 MS.gene39627:CDS 35.0%
GGTTCTCATTTACATGGAAA+TGG + chr4.2:24490349-24490368 MS.gene39627:CDS 35.0%
GTTTGGAAATTGATCGTTGT+TGG - chr4.2:24490131-24490150 None:intergenic 35.0%
GTTTGTTTGTCCAACAAGTT+CGG + chr4.2:24490606-24490625 MS.gene39627:CDS 35.0%
TCCTGGAAAGGATAAGAATT+TGG + chr4.2:24490651-24490670 MS.gene39627:CDS 35.0%
TTCAAGGGATTAACCTTGAA+GGG + chr4.2:24490485-24490504 MS.gene39627:CDS 35.0%
TTTCGAGATGAGAATGTCTT+TGG - chr4.2:24490071-24490090 None:intergenic 35.0%
TTTGGGAATGAAGATTCTGA+CGG - chr4.2:24490107-24490126 None:intergenic 35.0%
TTTGTTTGTCCAACAAGTTC+GGG + chr4.2:24490607-24490626 MS.gene39627:CDS 35.0%
! ATCAACCGTTATGCAGATTT+TGG + chr4.2:24490385-24490404 MS.gene39627:CDS 35.0%
! CTTTAGAAACAATGGTGTTG+AGG - chr4.2:24490234-24490253 None:intergenic 35.0%
! TAACCTTGAAGGGATTGTTT+TGG + chr4.2:24490495-24490514 MS.gene39627:CDS 35.0%
!! AGATTCTGACGGATATGTTT+TGG - chr4.2:24490096-24490115 None:intergenic 35.0%
!! ATGGAAATGGTTCTGATGAA+TGG + chr4.2:24490362-24490381 MS.gene39627:CDS 35.0%
!! TTGGATTCTACGTTTGTTGT+TGG - chr4.2:24490052-24490071 None:intergenic 35.0%
!! TTTGGAAAAGTGTTCTTTGC+AGG + chr4.2:24490403-24490422 MS.gene39627:CDS 35.0%
!!! ATTCTTTTGGGGTGTTGAAA+GGG + chr4.2:24490525-24490544 MS.gene39627:CDS 35.0%
AATGATTCGTTGAAGGACAG+AGG + chr4.2:24490715-24490734 MS.gene39627:CDS 40.0%
ATTCATGGACTTCCCTCAAA+TGG + chr4.2:24490323-24490342 MS.gene39627:CDS 40.0%
CCCAAATTCTTATCCTTTCC+AGG - chr4.2:24490655-24490674 None:intergenic 40.0%
CTATAGGAAGAGGATGTTCT+GGG - chr4.2:24490294-24490313 None:intergenic 40.0%
CTATTCGTGTTGGAACTGAA+GGG + chr4.2:24490461-24490480 MS.gene39627:CDS 40.0%
CTTCAAGGGATTAACCTTGA+AGG + chr4.2:24490484-24490503 MS.gene39627:CDS 40.0%
GAAAGGATAAGAATTTGGGG+AGG + chr4.2:24490656-24490675 MS.gene39627:CDS 40.0%
GAACCAAAACAATCCCTTCA+AGG - chr4.2:24490501-24490520 None:intergenic 40.0%
GATAAGAATTTGGGGAGGTT+GGG + chr4.2:24490661-24490680 MS.gene39627:CDS 40.0%
GGTCACATAGAAAGACTCAT+AGG + chr4.2:24489998-24490017 MS.gene39627:CDS 40.0%
GTGATTGAGACAAAAGGTGA+AGG + chr4.2:24490790-24490809 MS.gene39627:CDS 40.0%
GTGGAAGTGATTGAGACAAA+AGG + chr4.2:24490784-24490803 MS.gene39627:CDS 40.0%
GTGTTGAGGAAATTGTGGTA+TGG - chr4.2:24490220-24490239 None:intergenic 40.0%
GTTGTTGGATCAAAAGATGG+AGG - chr4.2:24490037-24490056 None:intergenic 40.0%
TAATCATGGGTGAGAGATCA+AGG - chr4.2:24489964-24489983 None:intergenic 40.0%
TATAGGAAGAGGATGTTCTG+GGG - chr4.2:24490293-24490312 None:intergenic 40.0%
TCCTTTCCAGGATTCAAAAG+CGG - chr4.2:24490643-24490662 None:intergenic 40.0%
TCTTCGTATGCTATAGGAAG+AGG - chr4.2:24490304-24490323 None:intergenic 40.0%
TGCAAACATTGCACATCACA+TGG + chr4.2:24490438-24490457 MS.gene39627:CDS 40.0%
TGCTGAGAATGATTCGTTGA+AGG + chr4.2:24490708-24490727 MS.gene39627:CDS 40.0%
TTCATGGACTTCCCTCAAAT+GGG + chr4.2:24490324-24490343 MS.gene39627:CDS 40.0%
TTGAGGAAATTGTGGTATGG+TGG - chr4.2:24490217-24490236 None:intergenic 40.0%
! AAAAGATGGAGGTACGATGT+TGG - chr4.2:24490026-24490045 None:intergenic 40.0%
! AAACAAGGAGAGGGAGTTTT+TGG - chr4.2:24490153-24490172 None:intergenic 40.0%
! AATTGGTTATGGTGGTGTTG+TGG + chr4.2:24490765-24490784 MS.gene39627:CDS 40.0%
! CAATGGTGTTGAGGAAATTG+TGG - chr4.2:24490225-24490244 None:intergenic 40.0%
!! GGACAGAGGTTGGTATTATA+AGG + chr4.2:24490729-24490748 MS.gene39627:CDS 40.0%
!! GTTGGGTTGTAAGAGAGTTT+TGG + chr4.2:24490678-24490697 MS.gene39627:CDS 40.0%
!!! CATTCTTTTGGGGTGTTGAA+AGG + chr4.2:24490524-24490543 MS.gene39627:CDS 40.0%
AATGAGAACCGACCCATTTG+AGG - chr4.2:24490339-24490358 None:intergenic 45.0%
AGGATTCAAAAGCGGGTCAT+CGG - chr4.2:24490635-24490654 None:intergenic 45.0%
ATGAGAACCGACCCATTTGA+GGG - chr4.2:24490338-24490357 None:intergenic 45.0%
ATTCGTTGAAGGACAGAGGT+TGG + chr4.2:24490719-24490738 MS.gene39627:CDS 45.0%
CATCACATGGCTATTCGTGT+TGG + chr4.2:24490451-24490470 MS.gene39627:CDS 45.0%
CCTTTCCAGGATTCAAAAGC+GGG - chr4.2:24490642-24490661 None:intergenic 45.0%
CGTGGAAGTAAACAAGGAGA+GGG - chr4.2:24490162-24490181 None:intergenic 45.0%
GCTATAGGAAGAGGATGTTC+TGG - chr4.2:24490295-24490314 None:intergenic 45.0%
GCTATTCGTGTTGGAACTGA+AGG + chr4.2:24490460-24490479 MS.gene39627:CDS 45.0%
GGATAAGAATTTGGGGAGGT+TGG + chr4.2:24490660-24490679 MS.gene39627:CDS 45.0%
TGTTGAAAGGGTTGGATCTG+AGG + chr4.2:24490537-24490556 MS.gene39627:CDS 45.0%
TTGGAACTGAAGGGCTTCAA+GGG + chr4.2:24490470-24490489 MS.gene39627:CDS 45.0%
! CCTCTCCTTGTTTACTTCCA+CGG + chr4.2:24490160-24490179 MS.gene39627:CDS 45.0%
! TGGGTCGGTTCTCATTTACA+TGG + chr4.2:24490343-24490362 MS.gene39627:CDS 45.0%
! TTGTGGTATGGTGGTGAGAA+AGG - chr4.2:24490208-24490227 None:intergenic 45.0%
!!! AGGAGAGGGAGTTTTTGGTT+TGG - chr4.2:24490148-24490167 None:intergenic 45.0%
!!! TTTTGGGGTGTTGAAAGGGT+TGG + chr4.2:24490529-24490548 MS.gene39627:CDS 45.0%
CACCACCGTGGAAGTAAACA+AGG - chr4.2:24490168-24490187 None:intergenic 50.0%
CCGTGGAAGTAAACAAGGAG+AGG - chr4.2:24490163-24490182 None:intergenic 50.0%
CTTGTTTACTTCCACGGTGG+TGG + chr4.2:24490166-24490185 MS.gene39627:CDS 50.0%
GTTGGAACTGAAGGGCTTCA+AGG + chr4.2:24490469-24490488 MS.gene39627:CDS 50.0%
TCATCGGATCCCGAACTTGT+TGG - chr4.2:24490619-24490638 None:intergenic 50.0%
TGGACTTCCCTCAAATGGGT+CGG + chr4.2:24490328-24490347 MS.gene39627:CDS 50.0%
TTCTTTGCAGGAGACAGTGC+TGG + chr4.2:24490415-24490434 MS.gene39627:CDS 50.0%
! CTCCTTGTTTACTTCCACGG+TGG + chr4.2:24490163-24490182 MS.gene39627:CDS 50.0%
!! CCCGCTTTTGAATCCTGGAA+AGG + chr4.2:24490639-24490658 MS.gene39627:CDS 50.0%
!! GATGACCCGCTTTTGAATCC+TGG + chr4.2:24490634-24490653 MS.gene39627:CDS 50.0%
CTACGCAGAAACCACCACCG+TGG - chr4.2:24490180-24490199 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 24489935 24490900 24489935 ID=MS.gene39627
chr4.2 mRNA 24489935 24490900 24489935 ID=MS.gene39627.t1;Parent=MS.gene39627
chr4.2 exon 24489935 24490900 24489935 ID=MS.gene39627.t1.exon1;Parent=MS.gene39627.t1
chr4.2 CDS 24489935 24490900 24489935 ID=cds.MS.gene39627.t1;Parent=MS.gene39627.t1
Gene Sequence

>MS.gene39627

ATGGATTCAAGCTCTAACGAAGTAGTCCTTGATCTCTCACCCATGATTAAAATCTACAAAGATGGTCACATAGAAAGACTCATAGGATCCAACATCGTACCTCCATCTTTTGATCCAACAACAAACGTAGAATCCAAAGACATTCTCATCTCGAAAGACCAAAACATATCCGTCAGAATCTTCATTCCCAAACCCAACAACGATCAATTTCCAAACCAAAAACTCCCTCTCCTTGTTTACTTCCACGGTGGTGGTTTCTGCGTAGAAACACCTTTCTCACCACCATACCACAATTTCCTCAACACCATTGTTTCTAAAGCTAATGTGATCGCTGTTTCAGTTGATTACAGAAGAGCCCCAGAACATCCTCTTCCTATAGCATACGAAGATTCATGGACTTCCCTCAAATGGGTCGGTTCTCATTTACATGGAAATGGTTCTGATGAATGGATCAACCGTTATGCAGATTTTGGAAAAGTGTTCTTTGCAGGAGACAGTGCTGGTGCAAACATTGCACATCACATGGCTATTCGTGTTGGAACTGAAGGGCTTCAAGGGATTAACCTTGAAGGGATTGTTTTGGTTCATACATTCTTTTGGGGTGTTGAAAGGGTTGGATCTGAGGCTGCTGAGAAATCTGAACATTTATCTTTGGCAGATAATTTATGGAGGTTTGTTTGTCCAACAAGTTCGGGATCCGATGACCCGCTTTTGAATCCTGGAAAGGATAAGAATTTGGGGAGGTTGGGTTGTAAGAGAGTTTTGGTTTGTGTTGCTGAGAATGATTCGTTGAAGGACAGAGGTTGGTATTATAAGGAGTTGCTTGAGAAAATTGGTTATGGTGGTGTTGTGGAAGTGATTGAGACAAAAGGTGAAGGACATGTTTTTCATCTCTTTAATCCAAATTGTGATAACGCTACTTCTTTGCTTAATCAAATTGCTTCCTTTATTAAGCATAGTGGTTAA
Protein sequence

>MS.gene39627.t1

MDSSSNEVVLDLSPMIKIYKDGHIERLIGSNIVPPSFDPTTNVESKDILISKDQNISVRIFIPKPNNDQFPNQKLPLLVYFHGGGFCVETPFSPPYHNFLNTIVSKANVIAVSVDYRRAPEHPLPIAYEDSWTSLKWVGSHLHGNGSDEWINRYADFGKVFFAGDSAGANIAHHMAIRVGTEGLQGINLEGIVLVHTFFWGVERVGSEAAEKSEHLSLADNLWRFVCPTSSGSDDPLLNPGKDKNLGRLGCKRVLVCVAENDSLKDRGWYYKELLEKIGYGGVVEVIETKGEGHVFHLFNPNCDNATSLLNQIASFIKHSG