AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene014782

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014782.t1 MTR_3g108020 98.777 327 4 0 1 327 1 327 0.0 662
MS.gene014782.t1 MTR_4g015840 57.185 341 127 5 1 325 1 338 2.46e-128 370
MS.gene014782.t1 MTR_2g014470 56.932 339 133 5 1 326 1 339 1.14e-127 369
MS.gene014782.t1 MTR_2g090705 55.233 344 129 6 1 327 1 336 1.45e-125 363
MS.gene014782.t1 MTR_4g078850 55.043 347 132 8 1 326 1 344 7.07e-124 359
MS.gene014782.t1 MTR_2g014480 51.488 336 143 6 1 316 1 336 6.74e-108 318
MS.gene014782.t1 MTR_5g037880 42.857 329 122 4 4 325 5 274 1.58e-82 251
MS.gene014782.t1 MTR_4g015840 54.321 243 103 3 88 325 22 261 1.03e-81 249
MS.gene014782.t1 MTR_7g109340 34.251 327 201 7 5 326 27 344 2.17e-53 179
MS.gene014782.t1 MTR_3g437840 47.205 161 83 2 166 325 2 161 3.32e-46 154
MS.gene014782.t1 MTR_3g088140 43.931 173 96 1 148 319 175 347 1.14e-45 159
MS.gene014782.t1 MTR_3g437360 46.707 167 87 2 145 309 172 338 3.79e-45 157
MS.gene014782.t1 MTR_2g006890 43.077 195 106 2 129 318 174 368 5.49e-44 155
MS.gene014782.t1 MTR_8g006430 29.457 387 168 10 5 325 15 362 7.44e-33 126
MS.gene014782.t1 MTR_3g087030 29.630 351 200 12 3 318 81 419 3.99e-31 122
MS.gene014782.t1 MTR_3g437850 36.453 203 70 5 3 182 1 167 6.68e-30 112
MS.gene014782.t1 MTR_5g065160 28.125 352 206 11 4 322 83 420 1.11e-25 106
MS.gene014782.t1 MTR_5g065160 28.125 352 206 11 4 322 82 419 1.14e-25 106
MS.gene014782.t1 MTR_5g065160 28.125 352 206 11 4 322 83 420 2.35e-25 106
MS.gene014782.t1 MTR_5g065160 28.125 352 206 11 4 322 76 413 2.37e-25 105
MS.gene014782.t1 MTR_3g027580 26.979 341 220 10 4 322 89 422 3.29e-23 99.8
MS.gene014782.t1 MTR_2g087660 34.965 143 91 1 185 325 216 358 1.12e-21 95.1
MS.gene014782.t1 MTR_4g023470 27.679 336 217 10 5 318 87 418 1.11e-20 92.4
MS.gene014782.t1 MTR_4g050420 32.867 143 94 1 185 325 214 356 5.08e-19 87.4
MS.gene014782.t1 MTR_7g112360 36.552 145 68 5 5 129 17 157 1.51e-18 82.0
MS.gene014782.t1 MTR_7g101070 53.846 65 30 0 4 68 358 422 1.72e-18 86.3
MS.gene014782.t1 MTR_7g112360 53.030 66 28 1 5 67 17 82 6.36e-18 78.6
MS.gene014782.t1 MTR_2g104030 41.818 110 58 2 4 113 70 173 1.19e-16 80.9
MS.gene014782.t1 MTR_1g029460 43.137 102 44 4 3 103 5 93 8.87e-15 74.7
MS.gene014782.t1 MTR_5g065860 51.562 64 30 1 4 67 48 110 1.20e-14 70.5
MS.gene014782.t1 MTR_4g085070 43.210 81 39 2 11 88 19 95 1.85e-14 70.5
MS.gene014782.t1 MTR_1g110310 47.887 71 36 1 4 74 16 85 2.89e-14 73.6
MS.gene014782.t1 MTR_8g022310 43.478 69 34 1 4 67 10 78 1.65e-13 68.9
MS.gene014782.t1 MTR_8g022310 43.478 69 34 1 4 67 10 78 2.67e-13 68.9
MS.gene014782.t1 MTR_8g022310 43.478 69 34 1 4 67 10 78 2.86e-13 68.2
MS.gene014782.t1 MTR_8g022310 43.478 69 34 1 4 67 10 78 3.34e-13 68.2
MS.gene014782.t1 MTR_5g012530 43.243 74 40 1 4 75 12 85 4.97e-13 70.1
MS.gene014782.t1 MTR_1g052110 46.154 65 34 1 6 70 40 103 5.00e-13 68.9
MS.gene014782.t1 MTR_5g035770 46.250 80 41 2 4 83 25 102 5.04e-13 69.7
MS.gene014782.t1 MTR_6g027110 40.000 75 41 1 3 73 1 75 9.54e-13 65.1
MS.gene014782.t1 MTR_7g069480 44.286 70 37 1 3 72 26 93 1.16e-12 68.9
MS.gene014782.t1 MTR_2g087660 32.353 102 67 1 185 284 216 317 1.36e-12 67.8
MS.gene014782.t1 MTR_5g004570 40.000 100 48 3 4 103 6 93 1.64e-12 66.6
MS.gene014782.t1 MTR_6g027030 41.333 75 40 1 3 73 1 75 3.95e-12 65.1
MS.gene014782.t1 MTR_7g092380 43.077 65 36 1 6 70 24 87 5.18e-12 65.9
MS.gene014782.t1 MTR_8g037810 39.216 102 59 2 5 106 7 105 8.14e-12 65.9
MS.gene014782.t1 MTR_6g026940 43.077 65 33 1 3 63 1 65 2.91e-11 62.0
MS.gene014782.t1 MTR_8g081620 40.845 71 41 1 5 74 61 131 3.19e-11 62.0
MS.gene014782.t1 MTR_3g100330 44.776 67 34 2 3 68 68 132 6.62e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014782.t1 AT5G25530 69.027 339 93 3 1 327 1 339 2.44e-161 454
MS.gene014782.t1 AT5G25530 67.147 347 94 4 1 327 1 347 1.41e-158 447
MS.gene014782.t1 AT3G08910 55.357 336 123 4 1 325 1 320 1.04e-126 365
MS.gene014782.t1 AT5G01390 56.433 342 123 6 1 325 1 333 1.57e-126 365
MS.gene014782.t1 AT1G10350 55.014 349 134 4 1 327 1 348 5.18e-126 365
MS.gene014782.t1 AT2G20560 56.012 341 131 6 1 326 1 337 6.64e-126 364
MS.gene014782.t1 AT1G59725 54.386 342 129 5 1 327 1 330 1.24e-121 353
MS.gene014782.t1 AT4G28480 55.460 348 133 3 1 326 1 348 2.49e-121 353
MS.gene014782.t1 AT3G47940 50.420 357 138 4 1 327 1 348 1.34e-115 338
MS.gene014782.t1 AT5G01390 49.552 335 99 5 1 325 1 275 1.14e-103 305
MS.gene014782.t1 AT4G28480 48.318 327 131 5 1 326 1 290 3.67e-96 286
MS.gene014782.t1 AT5G01390 41.791 335 86 6 1 325 1 236 1.11e-74 230
MS.gene014782.t1 AT2G20550 43.986 291 125 6 63 326 5 284 1.52e-69 218
MS.gene014782.t1 AT2G20550 43.986 291 125 6 63 326 5 284 1.52e-69 218
MS.gene014782.t1 AT5G01390 53.886 193 75 5 1 182 1 190 6.90e-60 192
MS.gene014782.t1 AT1G44160 48.876 178 91 0 148 325 176 353 8.94e-52 175
MS.gene014782.t1 AT1G11040 45.000 180 99 0 146 325 253 432 1.82e-47 166
MS.gene014782.t1 AT3G62600 29.444 360 182 6 2 326 24 346 8.71e-44 154
MS.gene014782.t1 AT2G22360 27.457 346 211 12 4 318 86 422 3.35e-24 102
MS.gene014782.t1 AT5G22060 37.063 143 88 1 185 325 217 359 1.97e-23 100
MS.gene014782.t1 AT5G22060 33.178 214 103 3 5 218 15 188 7.31e-17 81.3
MS.gene014782.t1 AT3G44110 36.364 143 89 1 185 325 216 358 8.14e-22 95.5
MS.gene014782.t1 AT1G28210 25.788 349 214 11 4 322 48 381 8.39e-20 89.7
MS.gene014782.t1 AT1G28210 25.788 349 214 11 4 322 48 381 9.82e-20 89.7
MS.gene014782.t1 AT1G28210 25.788 349 214 11 4 322 48 381 9.99e-20 89.4
MS.gene014782.t1 AT1G80030 44.762 105 52 2 4 108 75 173 6.00e-18 84.7
MS.gene014782.t1 AT1G80030 44.762 105 52 2 4 108 75 173 7.41e-18 84.7
MS.gene014782.t1 AT1G80030 44.762 105 52 2 4 108 75 173 7.41e-18 84.7
MS.gene014782.t1 AT1G80030 44.762 105 52 2 4 108 75 173 7.41e-18 84.7
MS.gene014782.t1 AT3G17830 54.054 74 32 1 2 75 61 132 1.28e-17 84.0
MS.gene014782.t1 AT1G56300 54.545 66 27 1 5 67 14 79 1.45e-17 77.8
MS.gene014782.t1 AT1G56300 54.545 66 27 1 5 67 14 79 2.03e-17 78.6
MS.gene014782.t1 AT4G39960 51.389 72 33 1 4 75 85 154 1.17e-16 80.9
MS.gene014782.t1 AT4G39960 51.389 72 33 1 4 75 85 154 1.17e-16 80.9
MS.gene014782.t1 AT5G48030 46.053 76 40 1 4 79 94 168 3.42e-16 79.3
MS.gene014782.t1 AT5G16650 52.239 67 31 1 4 70 11 76 2.15e-15 73.2
MS.gene014782.t1 AT5G16650 52.239 67 31 1 4 70 11 76 2.39e-15 72.0
MS.gene014782.t1 AT1G68370 47.887 71 36 1 4 74 17 86 1.58e-14 74.3
MS.gene014782.t1 AT2G41000 39.326 89 50 1 3 87 2 90 1.81e-14 71.6
MS.gene014782.t1 AT5G03160 46.154 65 35 0 4 68 370 434 2.38e-14 73.9
MS.gene014782.t1 AT3G44110 34.513 113 72 1 185 295 216 328 3.15e-14 72.8
MS.gene014782.t1 AT1G59980 43.478 69 38 1 6 74 25 92 4.59e-14 72.8
MS.gene014782.t1 AT2G41000 39.326 89 50 1 3 87 2 90 7.40e-14 69.3
MS.gene014782.t1 AT1G59980 43.478 69 38 1 6 74 25 92 9.18e-14 72.0
MS.gene014782.t1 AT1G71000 48.485 66 31 1 5 67 9 74 3.03e-13 67.4
MS.gene014782.t1 AT1G21080 41.584 101 46 3 3 103 5 92 3.59e-13 70.1
MS.gene014782.t1 AT1G21080 41.584 101 46 3 3 103 5 92 3.71e-13 70.1
MS.gene014782.t1 AT1G71000 48.485 66 31 1 5 67 9 74 3.91e-13 67.0
MS.gene014782.t1 AT2G21510 36.111 108 66 2 4 111 6 110 4.49e-13 69.7
MS.gene014782.t1 AT2G21510 36.111 108 66 2 4 111 6 110 4.49e-13 69.7
MS.gene014782.t1 AT2G21510 36.111 108 66 2 4 111 6 110 5.44e-13 69.3
MS.gene014782.t1 AT2G21510 36.111 108 66 2 4 111 6 110 5.78e-13 69.3
MS.gene014782.t1 AT2G21510 36.111 108 66 2 4 111 6 110 5.78e-13 69.3
MS.gene014782.t1 AT5G06910 46.154 65 34 1 6 70 31 94 1.13e-12 67.8
MS.gene014782.t1 AT5G05750 36.697 109 62 2 4 107 114 220 1.65e-12 67.4
MS.gene014782.t1 AT2G33735 43.077 65 36 1 4 68 22 85 2.21e-12 63.5
MS.gene014782.t1 AT2G33735 43.077 65 36 1 4 68 22 85 2.21e-12 63.5
MS.gene014782.t1 AT1G24120 42.500 80 44 2 4 83 20 97 3.86e-12 67.0
MS.gene014782.t1 AT1G76700 39.604 101 49 3 3 103 5 93 6.33e-12 66.2
MS.gene014782.t1 AT5G49060 47.761 67 33 1 4 70 99 163 6.34e-12 66.2
MS.gene014782.t1 AT5G49060 47.761 67 33 1 4 70 99 163 6.34e-12 66.2
MS.gene014782.t1 AT4G39150 34.259 108 68 2 4 111 6 110 6.36e-12 66.2
MS.gene014782.t1 AT4G39150 34.259 108 68 2 4 111 6 110 6.36e-12 66.2
MS.gene014782.t1 AT4G39150 34.259 108 68 2 4 111 6 110 6.36e-12 66.2
MS.gene014782.t1 AT4G13830 39.726 73 43 1 3 74 65 137 1.71e-11 62.0
MS.gene014782.t1 AT4G13830 39.726 73 43 1 3 74 65 137 2.09e-11 62.4
MS.gene014782.t1 AT2G35720 39.726 73 42 1 4 74 15 87 5.39e-11 63.9
MS.gene014782.t1 AT1G72416 40.909 66 37 1 4 67 5 70 9.91e-11 60.8

Find 79 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACTTGGTGACTCAGTTTC+TGG 0.142352 3.1:+85767229 None:intergenic
GGAAGTAGTCCCTTGAATTT+TGG 0.174079 3.1:-85767163 MS.gene014782:CDS
ATTAGTTGATTCCCTTTATC+TGG 0.206300 3.1:+85766334 None:intergenic
TGACCGGGTTCCTTTGTTAT+TGG 0.230224 3.1:+85766088 None:intergenic
AAGATATCTTCTGCACTTCT+TGG 0.243008 3.1:+85767199 None:intergenic
GATATCTTTGCAGAATTCTT+TGG 0.257479 3.1:-85767184 MS.gene014782:CDS
AGTTTGGAGGAGTTGTATTC+TGG 0.261924 3.1:-85766992 MS.gene014782:CDS
AAGATAACATTCCCAGATAA+AGG 0.288781 3.1:-85766346 MS.gene014782:CDS
GACTAAATTGCCTTGTAGTT+TGG 0.302178 3.1:-85767008 MS.gene014782:CDS
TCAACAGGCGGTGGTTTCTT+TGG 0.314972 3.1:+85767031 None:intergenic
TTATTGTTAGGGTTCTTGTC+AGG 0.339068 3.1:+85767709 None:intergenic
TTTAGTGCAGCACGTTGTTC+TGG 0.340516 3.1:+85766013 None:intergenic
TAACAAAGGAACCCGGTCAT+AGG 0.345303 3.1:-85766084 MS.gene014782:CDS
TCATAAACATTCCTTCTTTG+AGG 0.371333 3.1:+85767289 None:intergenic
CTCAGAGATCTGTTTGAAAC+GGG 0.404431 3.1:+85767672 None:intergenic
ATAGAAAATTGGCTATGAAA+TGG 0.433354 3.1:-85767735 MS.gene014782:CDS
ACCATCAGATGGAAATCTCT+TGG 0.438047 3.1:+85767120 None:intergenic
TATTGTTAGGGTTCTTGTCA+GGG 0.438705 3.1:+85767710 None:intergenic
AACAAAGGAACCCGGTCATA+GGG 0.440148 3.1:-85766083 MS.gene014782:CDS
AGATAACATTCCCAGATAAA+GGG 0.448544 3.1:-85766345 MS.gene014782:CDS
ATCACAAATACAAGATCTGC+TGG 0.449360 3.1:+85766301 None:intergenic
CAAGGCAATTTAGTCTCAAC+AGG 0.460386 3.1:+85767016 None:intergenic
TTTGTTCCTTTCTTCCATCC+CGG 0.465213 3.1:+85766367 None:intergenic
TAAATTGCCTTGTAGTTTGG+AGG 0.472522 3.1:-85767005 MS.gene014782:CDS
TGCTGCACTAAAGCGAGCAT+TGG 0.473058 3.1:-85766002 MS.gene014782:CDS
TTTCCATCTGATGGTGGAGC+AGG 0.478052 3.1:-85767112 MS.gene014782:CDS
GGTGACTCAGTTTCTGGTGA+TGG 0.483765 3.1:+85767235 None:intergenic
CATGAATTGTTCAAGAGAGA+TGG 0.486072 3.1:-85766265 MS.gene014782:CDS
TGATTTGAGGATCATATTTG+AGG 0.486195 3.1:-85766059 MS.gene014782:CDS
CCTCAAATCACCCCTATGAC+CGG 0.487277 3.1:+85766072 None:intergenic
ATTAAGCATTGAAGTAAAGC+CGG 0.489224 3.1:-85766386 MS.gene014782:CDS
ATATCACTAGCAGAAGCTAT+TGG 0.492007 3.1:-85766217 MS.gene014782:CDS
TTAGTTGATTCCCTTTATCT+GGG 0.493209 3.1:+85766335 None:intergenic
CCTCAGAGATCTGTTTGAAA+CGG 0.493838 3.1:+85767671 None:intergenic
CAAACGTAGTTTAAGTGTCC+CGG 0.507158 3.1:-85766164 MS.gene014782:CDS
GAGAACAAGGGTTAAAAGAA+AGG 0.512568 3.1:-85767258 MS.gene014782:CDS
GCTGCACTAAAGCGAGCATT+GGG 0.516052 3.1:-85766001 MS.gene014782:CDS
ATACAAGATCTGCTGGAAGT+TGG 0.521115 3.1:+85766308 None:intergenic
TTAAGCATTGAAGTAAAGCC+GGG 0.521592 3.1:-85766385 MS.gene014782:CDS
TCTGATGGTGGAGCAGGAAA+TGG 0.522820 3.1:-85767106 MS.gene014782:CDS
GGAAATCTCTTGGACCTCCC+TGG 0.526253 3.1:+85767130 None:intergenic
GAGCTTGTTGTTGCTAATGA+AGG 0.527192 3.1:-85766115 MS.gene014782:CDS
AGGAATGTTTATGATCAGCT+TGG 0.530957 3.1:-85767280 MS.gene014782:CDS
TATGATCAGCTTGGAGAACA+AGG 0.535520 3.1:-85767271 MS.gene014782:CDS
ATGAATTGTTCAAGAGAGAT+GGG 0.537623 3.1:-85766264 MS.gene014782:CDS
GTAAAGCCGGGATGGAAGAA+AGG 0.539331 3.1:-85766373 MS.gene014782:CDS
AGAAAGAAAGAAAATGGGTG+TGG 0.540206 3.1:-85767818 None:intergenic
AGGACAGTAGTGGATTCCTA+CGG 0.543187 3.1:-85766944 MS.gene014782:CDS
TCCAAGAGATTTCCATCTGA+TGG 0.546102 3.1:-85767121 MS.gene014782:CDS
CAAGGAAAATGAAGATCTCA+AGG 0.549083 3.1:-85766964 MS.gene014782:CDS
AGTTGTATTCTGGTTCTACA+AGG 0.550537 3.1:-85766982 MS.gene014782:CDS
TCCAGATGATCCAAAATTCA+AGG 0.552821 3.1:+85767153 None:intergenic
CTTCTTGGATAAAATCCACT+TGG 0.564609 3.1:+85767214 None:intergenic
CTCAAATCACCCCTATGACC+GGG 0.566792 3.1:+85766073 None:intergenic
TTTCCTGCTCCACCATCAGA+TGG 0.569001 3.1:+85767109 None:intergenic
TACAACTCCTCCAAACTACA+AGG 0.576940 3.1:+85766998 None:intergenic
TATTGAGTGATCCTCAAAGA+AGG 0.581960 3.1:-85767300 MS.gene014782:CDS
GAAGATCTCAAGGACAGTAG+TGG 0.582736 3.1:-85766954 MS.gene014782:CDS
CCGGTCATAGGGGTGATTTG+AGG 0.587567 3.1:-85766072 MS.gene014782:CDS
AATTTAGTCTCAACAGGCGG+TGG 0.590412 3.1:+85767022 None:intergenic
GCATTGAAGTAAAGCCGGGA+TGG 0.596425 3.1:-85766381 MS.gene014782:CDS
TCACTAGCAGAAGCTATTGG+TGG 0.596975 3.1:-85766214 MS.gene014782:CDS
ACAGATCTCTGAGGCTTATG+CGG 0.606049 3.1:-85767662 MS.gene014782:intron
GGACAGTAGTGGATTCCTAC+GGG 0.608784 3.1:-85766943 MS.gene014782:intron
GCAGGAAATGGTGGATTCAG+CGG 0.614762 3.1:-85767094 MS.gene014782:CDS
CCAGATGATCCAAAATTCAA+GGG 0.617332 3.1:+85767154 None:intergenic
GATGGTGGAGCAGGAAATGG+TGG 0.627146 3.1:-85767103 MS.gene014782:CDS
ATGATCAGCTTGGAGAACAA+GGG 0.627749 3.1:-85767270 MS.gene014782:CDS
TGAAGGAATGCCAATAACAA+AGG 0.628931 3.1:-85766098 MS.gene014782:CDS
GCACTAAAGCGAGCATTGGG+TGG 0.634751 3.1:-85765998 MS.gene014782:CDS
CCAGAAACTGAGTCACCAAG+TGG 0.638580 3.1:-85767229 MS.gene014782:CDS
TCTCTCTTGAACAATTCATG+AGG 0.646574 3.1:+85766268 None:intergenic
AAGAGATTTCCATCTGATGG+TGG 0.651360 3.1:-85767118 MS.gene014782:CDS
GCAACAACAAGCTCATAACC+AGG 0.661064 3.1:+85766124 None:intergenic
ACAAAGGAACCCGGTCATAG+GGG 0.665969 3.1:-85766082 MS.gene014782:CDS
CCGTTTCAAACAGATCTCTG+AGG 0.684168 3.1:-85767671 MS.gene014782:CDS
GGCAATTTAGTCTCAACAGG+CGG 0.684270 3.1:+85767019 None:intergenic
ATGCCAATAACAAAGGAACC+CGG 0.688633 3.1:-85766091 MS.gene014782:CDS
TTGGATCATCTGGACCAGGG+AGG 0.719770 3.1:-85767144 MS.gene014782:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTGAAAAAAAGAAAAGA+TGG + chr3.1:85766177-85766196 None:intergenic 15.0%
!! AATTGAAAAAAAGAAAAGAT+GGG + chr3.1:85766176-85766195 None:intergenic 15.0%
!! ATAATTAAATTCCCTAATAA+AGG + chr3.1:85766201-85766220 None:intergenic 15.0%
!! ATACTCATGATTAAATTAAT+AGG + chr3.1:85767289-85767308 None:intergenic 15.0%
!! TTATAACAAAAGATAAGATA+AGG + chr3.1:85767165-85767184 None:intergenic 15.0%
!!! GAGAAATTTTTATGAATTTT+AGG - chr3.1:85766476-85766495 MS.gene014782:intron 15.0%
!!! TTTTCAATTTTCCTTTATTA+GGG - chr3.1:85766187-85766206 MS.gene014782:CDS 15.0%
!!! TTTTTCAATTTTCCTTTATT+AGG - chr3.1:85766186-85766205 MS.gene014782:CDS 15.0%
!! AAATGAATCACAAAATGTTA+GGG - chr3.1:85766338-85766357 MS.gene014782:CDS 20.0%
!! AACAAAAAACACAACAATAA+AGG + chr3.1:85766974-85766993 None:intergenic 20.0%
!! GCTTATAGTTTATATGAAAA+TGG - chr3.1:85767134-85767153 MS.gene014782:CDS 20.0%
!! GTTGTTTATATAATATGCTT+GGG - chr3.1:85766991-85767010 MS.gene014782:CDS 20.0%
!! TAAAGGTTCATATAATAAGT+TGG + chr3.1:85766957-85766976 None:intergenic 20.0%
!! TAAATGAATCACAAAATGTT+AGG - chr3.1:85766337-85766356 MS.gene014782:CDS 20.0%
!! TTCATATAGGAAAATGTTAA+TGG - chr3.1:85766367-85766386 MS.gene014782:CDS 20.0%
!!! AAGATGTTTGTTTGTTTTAT+GGG - chr3.1:85767321-85767340 MS.gene014782:intron 20.0%
!!! ATATCTTTTGATTCACAATA+AGG + chr3.1:85767566-85767585 None:intergenic 20.0%
!!! ATGTTAATGGTTAATTTGTT+AGG - chr3.1:85766380-85766399 MS.gene014782:CDS 20.0%
!!! GAAAAAAGCATATAGAAAAT+TGG - chr3.1:85766053-85766072 MS.gene014782:CDS 20.0%
!!! TATGAAAACAAGTTGAAAAT+AGG + chr3.1:85767088-85767107 None:intergenic 20.0%
!!! TGATATTATTTTGCAATACA+TGG - chr3.1:85766268-85766287 MS.gene014782:CDS 20.0%
!!! TGTTAATGGTTAATTTGTTA+GGG - chr3.1:85766381-85766400 MS.gene014782:CDS 20.0%
!!! TGTTGTTTATATAATATGCT+TGG - chr3.1:85766990-85767009 MS.gene014782:CDS 20.0%
!!! TTCATATAATAAGTTGGATT+GGG + chr3.1:85766951-85766970 None:intergenic 20.0%
! ATAGAAAATTGGCTATGAAA+TGG - chr3.1:85766064-85766083 MS.gene014782:CDS 25.0%
! GGTATATAACTTCTTTGATA+CGG + chr3.1:85766423-85766442 None:intergenic 25.0%
! TTAAACTGATTATCCAAACA+AGG - chr3.1:85767230-85767249 MS.gene014782:CDS 25.0%
! TTTATATAATATGCTTGGGT+TGG - chr3.1:85766995-85767014 MS.gene014782:CDS 25.0%
!! GGATTACTATAACATTTTGA+AGG - chr3.1:85766002-85766021 MS.gene014782:CDS 25.0%
!! GTTCATATAATAAGTTGGAT+TGG + chr3.1:85766952-85766971 None:intergenic 25.0%
!! TTTTATGTCATGGTAGAAAT+TGG - chr3.1:85766300-85766319 MS.gene014782:CDS 25.0%
!!! ATTATTTTGCAATACATGGA+GGG - chr3.1:85766272-85766291 MS.gene014782:CDS 25.0%
!!! CAAGATGTTTGTTTGTTTTA+TGG - chr3.1:85767320-85767339 MS.gene014782:intron 25.0%
!!! CAGCTTCTTTTTTATTGTTA+GGG + chr3.1:85766104-85766123 None:intergenic 25.0%
!!! GTTAGGGTTTTTTTTCATAT+AGG - chr3.1:85766354-85766373 MS.gene014782:CDS 25.0%
!!! TATTATTTTGCAATACATGG+AGG - chr3.1:85766271-85766290 MS.gene014782:CDS 25.0%
!!! TCAGCTTCTTTTTTATTGTT+AGG + chr3.1:85766105-85766124 None:intergenic 25.0%
!!! TTACTATAACATTTTGAAGG+TGG - chr3.1:85766005-85766024 MS.gene014782:CDS 25.0%
AAGATAACATTCCCAGATAA+AGG - chr3.1:85767453-85767472 MS.gene014782:intron 30.0%
AGATAACATTCCCAGATAAA+GGG - chr3.1:85767454-85767473 MS.gene014782:intron 30.0%
ATGAATTGTTCAAGAGAGAT+GGG - chr3.1:85767535-85767554 MS.gene014782:intron 30.0%
CATGTCGTTAATAAACAAGA+GGG + chr3.1:85766444-85766463 None:intergenic 30.0%
GATATCTTTGCAGAATTCTT+TGG - chr3.1:85766615-85766634 MS.gene014782:intron 30.0%
GGTAGAAATTGGAATTGAAA+TGG - chr3.1:85766311-85766330 MS.gene014782:CDS 30.0%
TCAAGAAAATGCAACACATT+AGG + chr3.1:85766238-85766257 None:intergenic 30.0%
TCATAAACATTCCTTCTTTG+AGG + chr3.1:85766513-85766532 None:intergenic 30.0%
TCATGTCGTTAATAAACAAG+AGG + chr3.1:85766445-85766464 None:intergenic 30.0%
TGATTTGAGGATCATATTTG+AGG - chr3.1:85767740-85767759 MS.gene014782:CDS 30.0%
TTTATGGGTCAATTGTTCTA+AGG - chr3.1:85767336-85767355 MS.gene014782:intron 30.0%
! ATTAGTTGATTCCCTTTATC+TGG + chr3.1:85767468-85767487 None:intergenic 30.0%
! TTAGTTGATTCCCTTTATCT+GGG + chr3.1:85767467-85767486 None:intergenic 30.0%
!! ATTAAGCATTGAAGTAAAGC+CGG - chr3.1:85767413-85767432 MS.gene014782:intron 30.0%
!! TTTGTTAGGGTTATTTTGTG+TGG - chr3.1:85766394-85766413 MS.gene014782:CDS 30.0%
AAGATATCTTCTGCACTTCT+TGG + chr3.1:85766603-85766622 None:intergenic 35.0%
ACGTTTCGTTTATCATCGTT+TGG - chr3.1:85766880-85766899 MS.gene014782:intron 35.0%
AGGAATGTTTATGATCAGCT+TGG - chr3.1:85766519-85766538 MS.gene014782:intron 35.0%
AGGTCTAGGTTAGAGATATA+AGG - chr3.1:85767250-85767269 MS.gene014782:CDS 35.0%
ATATCACTAGCAGAAGCTAT+TGG - chr3.1:85767582-85767601 MS.gene014782:intron 35.0%
ATCACAAATACAAGATCTGC+TGG + chr3.1:85767501-85767520 None:intergenic 35.0%
CAAGGAAAATGAAGATCTCA+AGG - chr3.1:85766835-85766854 MS.gene014782:intron 35.0%
CATGAATTGTTCAAGAGAGA+TGG - chr3.1:85767534-85767553 MS.gene014782:intron 35.0%
CCAGATGATCCAAAATTCAA+GGG + chr3.1:85766648-85766667 None:intergenic 35.0%
CTTCTTGGATAAAATCCACT+TGG + chr3.1:85766588-85766607 None:intergenic 35.0%
GAAGGTGGATAAAAATGCTA+CGG - chr3.1:85766020-85766039 MS.gene014782:CDS 35.0%
GACTAAATTGCCTTGTAGTT+TGG - chr3.1:85766791-85766810 MS.gene014782:intron 35.0%
GAGAACAAGGGTTAAAAGAA+AGG - chr3.1:85766541-85766560 MS.gene014782:intron 35.0%
TAAATTGCCTTGTAGTTTGG+AGG - chr3.1:85766794-85766813 MS.gene014782:intron 35.0%
TATTGAGTGATCCTCAAAGA+AGG - chr3.1:85766499-85766518 MS.gene014782:intron 35.0%
TATTGTTAGGGTTCTTGTCA+GGG + chr3.1:85766092-85766111 None:intergenic 35.0%
TCCAGATGATCCAAAATTCA+AGG + chr3.1:85766649-85766668 None:intergenic 35.0%
TCTCTCTTGAACAATTCATG+AGG + chr3.1:85767534-85767553 None:intergenic 35.0%
TGAAGGAATGCCAATAACAA+AGG - chr3.1:85767701-85767720 MS.gene014782:CDS 35.0%
TGATTATCCAAACAAGGTCT+AGG - chr3.1:85767236-85767255 MS.gene014782:CDS 35.0%
TTATTGTTAGGGTTCTTGTC+AGG + chr3.1:85766093-85766112 None:intergenic 35.0%
! ATGATGACGAAAATTGCAGA+AGG - chr3.1:85767370-85767389 MS.gene014782:intron 35.0%
! TGATGACGAAAATTGCAGAA+GGG - chr3.1:85767371-85767390 MS.gene014782:intron 35.0%
!! AGTTGTATTCTGGTTCTACA+AGG - chr3.1:85766817-85766836 MS.gene014782:intron 35.0%
!! GTTCTGGTGTCAATTTTGTT+GGG + chr3.1:85767773-85767792 None:intergenic 35.0%
!! TATAATATGCTTGGGTTGGT+TGG - chr3.1:85766999-85767018 MS.gene014782:CDS 35.0%
!! TGTTCTGGTGTCAATTTTGT+TGG + chr3.1:85767774-85767793 None:intergenic 35.0%
!! TTAAGCATTGAAGTAAAGCC+GGG - chr3.1:85767414-85767433 MS.gene014782:intron 35.0%
!!! GAGGGTTTAGTTTTATGTCA+TGG - chr3.1:85766290-85766309 MS.gene014782:CDS 35.0%
AAGAGATTTCCATCTGATGG+TGG - chr3.1:85766681-85766700 MS.gene014782:intron 40.0%
ACCATCAGATGGAAATCTCT+TGG + chr3.1:85766682-85766701 None:intergenic 40.0%
AGTTTGGAGGAGTTGTATTC+TGG - chr3.1:85766807-85766826 MS.gene014782:intron 40.0%
ATACAAGATCTGCTGGAAGT+TGG + chr3.1:85767494-85767513 None:intergenic 40.0%
ATGATCAGCTTGGAGAACAA+GGG - chr3.1:85766529-85766548 MS.gene014782:intron 40.0%
ATGCCAATAACAAAGGAACC+CGG - chr3.1:85767708-85767727 MS.gene014782:CDS 40.0%
CAAACGTAGTTTAAGTGTCC+CGG - chr3.1:85767635-85767654 MS.gene014782:intron 40.0%
CAAGGCAATTTAGTCTCAAC+AGG + chr3.1:85766786-85766805 None:intergenic 40.0%
CCTCAGAGATCTGTTTGAAA+CGG + chr3.1:85766131-85766150 None:intergenic 40.0%
GTGAAAAACATTGTGAGTCC+TGG - chr3.1:85767657-85767676 MS.gene014782:intron 40.0%
TACAACTCCTCCAAACTACA+AGG + chr3.1:85766804-85766823 None:intergenic 40.0%
TATGATCAGCTTGGAGAACA+AGG - chr3.1:85766528-85766547 MS.gene014782:intron 40.0%
TCCAAGAGATTTCCATCTGA+TGG - chr3.1:85766678-85766697 MS.gene014782:intron 40.0%
TCTCTAACCTAGACCTTGTT+TGG + chr3.1:85767246-85767265 None:intergenic 40.0%
TTTGTTCCTTTCTTCCATCC+CGG + chr3.1:85767435-85767454 None:intergenic 40.0%
! AATTTTGGATCATCTGGACC+AGG - chr3.1:85766651-85766670 MS.gene014782:intron 40.0%
! ATTTTGGATCATCTGGACCA+GGG - chr3.1:85766652-85766671 MS.gene014782:intron 40.0%
! CCCTTGAATTTTGGATCATC+TGG - chr3.1:85766645-85766664 MS.gene014782:intron 40.0%
! CTCAGAGATCTGTTTGAAAC+GGG + chr3.1:85766130-85766149 None:intergenic 40.0%
! GACTCACAATGTTTTTCACC+GGG + chr3.1:85767656-85767675 None:intergenic 40.0%
! GGAAGTAGTCCCTTGAATTT+TGG - chr3.1:85766636-85766655 MS.gene014782:intron 40.0%
! GGACTCACAATGTTTTTCAC+CGG + chr3.1:85767657-85767676 None:intergenic 40.0%
!! GAGCTTGTTGTTGCTAATGA+AGG - chr3.1:85767684-85767703 MS.gene014782:CDS 40.0%
AACAAAGGAACCCGGTCATA+GGG - chr3.1:85767716-85767735 MS.gene014782:CDS 45.0%
AATTTAGTCTCAACAGGCGG+TGG + chr3.1:85766780-85766799 None:intergenic 45.0%
CCGTTTCAAACAGATCTCTG+AGG - chr3.1:85766128-85766147 MS.gene014782:CDS 45.0%
GAAGATCTCAAGGACAGTAG+TGG - chr3.1:85766845-85766864 MS.gene014782:intron 45.0%
GATAAACGAAACGTACCCGT+AGG + chr3.1:85766874-85766893 None:intergenic 45.0%
GCAACAACAAGCTCATAACC+AGG + chr3.1:85767678-85767697 None:intergenic 45.0%
GGCAATTTAGTCTCAACAGG+CGG + chr3.1:85766783-85766802 None:intergenic 45.0%
TAACAAAGGAACCCGGTCAT+AGG - chr3.1:85767715-85767734 MS.gene014782:CDS 45.0%
TCACTAGCAGAAGCTATTGG+TGG - chr3.1:85767585-85767604 MS.gene014782:intron 45.0%
TTTAGTGCAGCACGTTGTTC+TGG + chr3.1:85767789-85767808 None:intergenic 45.0%
! TGACCGGGTTCCTTTGTTAT+TGG + chr3.1:85767714-85767733 None:intergenic 45.0%
!! ACAGATCTCTGAGGCTTATG+CGG - chr3.1:85766137-85766156 MS.gene014782:CDS 45.0%
!! AGGACAGTAGTGGATTCCTA+CGG - chr3.1:85766855-85766874 MS.gene014782:intron 45.0%
ACAAAGGAACCCGGTCATAG+GGG - chr3.1:85767717-85767736 MS.gene014782:CDS 50.0%
CATCGTTTGGATCCTCTGCA+AGG - chr3.1:85766893-85766912 MS.gene014782:intron 50.0%
CCAGAAACTGAGTCACCAAG+TGG - chr3.1:85766570-85766589 MS.gene014782:intron 50.0%
CCTCAAATCACCCCTATGAC+CGG + chr3.1:85767730-85767749 None:intergenic 50.0%
CTCAAATCACCCCTATGACC+GGG + chr3.1:85767729-85767748 None:intergenic 50.0%
GCATTGAAGTAAAGCCGGGA+TGG - chr3.1:85767418-85767437 MS.gene014782:intron 50.0%
GCTGCACTAAAGCGAGCATT+GGG - chr3.1:85767798-85767817 MS.gene014782:CDS 50.0%
GGATTGGGATCTCCACTGAA+TGG + chr3.1:85766936-85766955 None:intergenic 50.0%
GTAAAGCCGGGATGGAAGAA+AGG - chr3.1:85767426-85767445 MS.gene014782:intron 50.0%
TCAACAGGCGGTGGTTTCTT+TGG + chr3.1:85766771-85766790 None:intergenic 50.0%
TGCTGCACTAAAGCGAGCAT+TGG - chr3.1:85767797-85767816 MS.gene014782:CDS 50.0%
TTTCCTGCTCCACCATCAGA+TGG + chr3.1:85766693-85766712 None:intergenic 50.0%
! CCACTTGGTGACTCAGTTTC+TGG + chr3.1:85766573-85766592 None:intergenic 50.0%
!! GCAGGAAATGGTGGATTCAG+CGG - chr3.1:85766705-85766724 MS.gene014782:intron 50.0%
!! GGACAGTAGTGGATTCCTAC+GGG - chr3.1:85766856-85766875 MS.gene014782:intron 50.0%
!! GGTGACTCAGTTTCTGGTGA+TGG + chr3.1:85766567-85766586 None:intergenic 50.0%
!! TCTGATGGTGGAGCAGGAAA+TGG - chr3.1:85766693-85766712 MS.gene014782:intron 50.0%
!! TTTCCATCTGATGGTGGAGC+AGG - chr3.1:85766687-85766706 MS.gene014782:intron 50.0%
CCGGTCATAGGGGTGATTTG+AGG - chr3.1:85767727-85767746 MS.gene014782:CDS 55.0%
GCAATGGTGCAGCCATTCAG+TGG - chr3.1:85766921-85766940 MS.gene014782:intron 55.0%
GGAAATCTCTTGGACCTCCC+TGG + chr3.1:85766672-85766691 None:intergenic 55.0%
TTGGATCATCTGGACCAGGG+AGG - chr3.1:85766655-85766674 MS.gene014782:intron 55.0%
!! GATGGTGGAGCAGGAAATGG+TGG - chr3.1:85766696-85766715 MS.gene014782:intron 55.0%
!! GCACTAAAGCGAGCATTGGG+TGG - chr3.1:85767801-85767820 MS.gene014782:CDS 55.0%
CCATTGCAGCAGCCTTGCAG+AGG + chr3.1:85766908-85766927 None:intergenic 60.0%
CCTCTGCAAGGCTGCTGCAA+TGG - chr3.1:85766905-85766924 MS.gene014782:intron 60.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 85765994 85767827 85765994 ID=MS.gene014782
chr3.1 mRNA 85765994 85767827 85765994 ID=MS.gene014782.t1;Parent=MS.gene014782
chr3.1 exon 85767663 85767827 85767663 ID=MS.gene014782.t1.exon1;Parent=MS.gene014782.t1
chr3.1 CDS 85767663 85767827 85767663 ID=cds.MS.gene014782.t1;Parent=MS.gene014782.t1
chr3.1 exon 85766944 85767323 85766944 ID=MS.gene014782.t1.exon2;Parent=MS.gene014782.t1
chr3.1 CDS 85766944 85767323 85766944 ID=cds.MS.gene014782.t1;Parent=MS.gene014782.t1
chr3.1 exon 85765994 85766432 85765994 ID=MS.gene014782.t1.exon3;Parent=MS.gene014782.t1
chr3.1 CDS 85765994 85766432 85765994 ID=cds.MS.gene014782.t1;Parent=MS.gene014782.t1
Gene Sequence

>MS.gene014782

ATGGGTGTGGATTACTATAACATTTTGAAGGTGGATAAAAATGCTACGGAAGATGATTTGAAAAAAGCATATAGAAAATTGGCTATGAAATGGCACCCTGACAAGAACCCTAACAATAAAAAAGAAGCTGAAGCCCGTTTCAAACAGATCTCTGAGGCTTATGCGGTAACAAAATCATTCCCATCTTTTCTTTTTTTCAATTTTCCTTTATTAGGGAATTTAATTATAATTTATAATGACACCTAATGTGTTGCATTTTCTTGATCATGAATGTTGATATTATTTTGCAATACATGGAGGGTTTAGTTTTATGTCATGGTAGAAATTGGAATTGAAATGGTGATAAATGAATCACAAAATGTTAGGGTTTTTTTTCATATAGGAAAATGTTAATGGTTAATTTGTTAGGGTTATTTTGTGTGGATTCCGTATCAAAGAAGTTATATACCCTCTTGTTTATTAACGACATGAATCTCAATCTTGAGAAATTTTTATGAATTTTAGGTATTGAGTGATCCTCAAAGAAGGAATGTTTATGATCAGCTTGGAGAACAAGGGTTAAAAGAAAGGCCATCACCAGAAACTGAGTCACCAAGTGGATTTTATCCAAGAAGTGCAGAAGATATCTTTGCAGAATTCTTTGGAAGTAGTCCCTTGAATTTTGGATCATCTGGACCAGGGAGGTCCAAGAGATTTCCATCTGATGGTGGAGCAGGAAATGGTGGATTCAGCGGAGATTTTAATTCTAGAACACATAGCGAAAGAGCAAATACACCAAAGAAACCACCGCCTGTTGAGACTAAATTGCCTTGTAGTTTGGAGGAGTTGTATTCTGGTTCTACAAGGAAAATGAAGATCTCAAGGACAGTAGTGGATTCCTACGGGTACGTTTCGTTTATCATCGTTTGGATCCTCTGCAAGGCTGCTGCAATGGTGCAGCCATTCAGTGGAGATCCCAATCCAACTTATTATATGAACCTTTATTGTTGTGTTTTTTGTTGTTTATATAATATGCTTGGGTTGGTTGGTTTATTTGAGCTTATCTACTAACATTGTGAGCTTATGAAAACAACATATAACAAGTCACATAACCTATTTTCAACTTGTTTTCATAAGTTTGTCATGATAGCTTACGAAAACGCTTATAGTTTATATGAAAATGGCATGACCTTATCTTATCTTTTGTTATAAAATAGTTTATACATAAATGCTTATATAATAAGAGTTTACGCTTAGTTAAACTGATTATCCAAACAAGGTCTAGGTTAGAGATATAAGGACAAAAGTTACTGCCTATTAATTTAATCATGAGTATTAGTAATGACACAAGATGTTTGTTTGTTTTATGGGTCAATTGTTCTAAGGTGTCTTTGTTTATGATGACGAAAATTGCAGAAGGGAAATTAAAGAAACAGAGATATTAAGCATTGAAGTAAAGCCGGGATGGAAGAAAGGAACAAAGATAACATTCCCAGATAAAGGGAATCAACTAATTAACCAACTTCCAGCAGATCTTGTATTTGTGATTGATGAGAAGCCTCATGAATTGTTCAAGAGAGATGGGAATGACCTTATTGTGAATCAAAAGATATCACTAGCAGAAGCTATTGGTGGAACTTCAATAAATATCAAAACACTTTACAAACGTAGTTTAAGTGTCCCGGTGAAAAACATTGTGAGTCCTGGTTATGAGCTTGTTGTTGCTAATGAAGGAATGCCAATAACAAAGGAACCCGGTCATAGGGGTGATTTGAGGATCATATTTGAGGTTAAGTTCCCAACAAAATTGACACCAGAACAACGTGCTGCACTAAAGCGAGCATTGGGTGGTTAA
Protein sequence

>MS.gene014782.t1

MGVDYYNILKVDKNATEDDLKKAYRKLAMKWHPDKNPNNKKEAEARFKQISEAYAVLSDPQRRNVYDQLGEQGLKERPSPETESPSGFYPRSAEDIFAEFFGSSPLNFGSSGPGRSKRFPSDGGAGNGGFSGDFNSRTHSERANTPKKPPPVETKLPCSLEELYSGSTRKMKISRTVVDSYGREIKETEILSIEVKPGWKKGTKITFPDKGNQLINQLPADLVFVIDEKPHELFKRDGNDLIVNQKISLAEAIGGTSINIKTLYKRSLSVPVKNIVSPGYELVVANEGMPITKEPGHRGDLRIIFEVKFPTKLTPEQRAALKRALGG