Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01038.t1 | XP_003593642.1 | 93.9 | 347 | 14 | 2 | 1 | 347 | 1 | 340 | 3.00E-181 | 644.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01038.t1 | Q5R8J8 | 44.1 | 358 | 163 | 8 | 1 | 345 | 1 | 334 | 2.0e-69 | 264.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01038.t1 | A2Q505 | 93.9 | 347 | 14 | 2 | 1 | 347 | 1 | 340 | 2.1e-181 | 644.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene01038 | MS.gene75767 | PPI |
MS.gene01038 | MS.gene037465 | PPI |
MS.gene01038 | MS.gene066761 | PPI |
MS.gene01038 | MS.gene034468 | PPI |
MS.gene01038 | MS.gene43051 | PPI |
MS.gene01038 | MS.gene77100 | PPI |
MS.gene01038 | MS.gene014782 | PPI |
MS.gene66767 | MS.gene01038 | PPI |
MS.gene01038 | MS.gene050322 | PPI |
MS.gene01038 | MS.gene50004 | PPI |
MS.gene01038 | MS.gene031675 | PPI |
MS.gene01038 | MS.gene007227 | PPI |
MS.gene01038 | MS.gene84339 | PPI |
MS.gene01038 | MS.gene002499 | PPI |
MS.gene01038 | MS.gene072961 | PPI |
MS.gene045555 | MS.gene01038 | PPI |
MS.gene01038 | MS.gene01472 | PPI |
MS.gene006630 | MS.gene01038 | PPI |
MS.gene01038 | MS.gene35396 | PPI |
MS.gene01038 | MS.gene047354 | PPI |
MS.gene50013 | MS.gene01038 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01038.t1 | MTR_2g014470 | 96.542 | 347 | 5 | 2 | 1 | 347 | 1 | 340 | 0.0 | 676 |
MS.gene01038.t1 | MTR_4g078850 | 78.797 | 349 | 66 | 4 | 1 | 346 | 1 | 344 | 0.0 | 540 |
MS.gene01038.t1 | MTR_4g015840 | 69.143 | 350 | 93 | 5 | 1 | 346 | 1 | 339 | 3.59e-167 | 469 |
MS.gene01038.t1 | MTR_2g090705 | 69.429 | 350 | 88 | 3 | 1 | 346 | 1 | 335 | 7.73e-163 | 458 |
MS.gene01038.t1 | MTR_2g014480 | 68.895 | 344 | 91 | 6 | 1 | 336 | 1 | 336 | 5.02e-152 | 431 |
MS.gene01038.t1 | MTR_3g108020 | 55.652 | 345 | 133 | 4 | 1 | 345 | 1 | 325 | 1.14e-127 | 369 |
MS.gene01038.t1 | MTR_4g015840 | 68.504 | 254 | 68 | 4 | 97 | 346 | 17 | 262 | 3.51e-113 | 330 |
MS.gene01038.t1 | MTR_3g437360 | 39.169 | 337 | 195 | 7 | 2 | 329 | 3 | 338 | 4.67e-69 | 219 |
MS.gene01038.t1 | MTR_5g037880 | 54.237 | 177 | 81 | 0 | 169 | 345 | 98 | 274 | 4.87e-67 | 213 |
MS.gene01038.t1 | MTR_5g037880 | 52.128 | 94 | 32 | 2 | 4 | 90 | 5 | 92 | 7.69e-21 | 91.3 |
MS.gene01038.t1 | MTR_3g437840 | 51.553 | 161 | 78 | 0 | 186 | 346 | 2 | 162 | 2.32e-54 | 176 |
MS.gene01038.t1 | MTR_7g109340 | 33.913 | 345 | 196 | 7 | 5 | 345 | 27 | 343 | 2.30e-50 | 171 |
MS.gene01038.t1 | MTR_3g088140 | 42.857 | 196 | 105 | 3 | 153 | 341 | 157 | 352 | 1.28e-44 | 157 |
MS.gene01038.t1 | MTR_8g006430 | 33.609 | 363 | 204 | 11 | 5 | 345 | 15 | 362 | 1.81e-44 | 158 |
MS.gene01038.t1 | MTR_2g006890 | 45.000 | 180 | 98 | 1 | 167 | 345 | 196 | 375 | 3.34e-44 | 156 |
MS.gene01038.t1 | MTR_3g437850 | 35.610 | 205 | 89 | 5 | 3 | 202 | 1 | 167 | 5.38e-32 | 118 |
MS.gene01038.t1 | MTR_3g087030 | 27.793 | 367 | 216 | 11 | 4 | 344 | 82 | 425 | 1.34e-31 | 123 |
MS.gene01038.t1 | MTR_2g087660 | 37.241 | 145 | 89 | 1 | 203 | 345 | 214 | 358 | 1.54e-25 | 106 |
MS.gene01038.t1 | MTR_2g087660 | 60.563 | 71 | 23 | 2 | 5 | 75 | 14 | 79 | 5.33e-12 | 67.0 |
MS.gene01038.t1 | MTR_4g050420 | 32.979 | 188 | 118 | 4 | 161 | 345 | 174 | 356 | 4.40e-25 | 105 |
MS.gene01038.t1 | MTR_4g050420 | 59.155 | 71 | 24 | 2 | 5 | 75 | 14 | 79 | 3.99e-11 | 64.3 |
MS.gene01038.t1 | MTR_5g065160 | 26.849 | 365 | 206 | 13 | 4 | 338 | 76 | 409 | 2.06e-22 | 98.2 |
MS.gene01038.t1 | MTR_5g065160 | 26.849 | 365 | 206 | 13 | 4 | 338 | 83 | 416 | 2.62e-22 | 97.8 |
MS.gene01038.t1 | MTR_2g104030 | 44.697 | 132 | 51 | 4 | 4 | 135 | 70 | 179 | 2.67e-21 | 95.1 |
MS.gene01038.t1 | MTR_3g027580 | 27.746 | 346 | 223 | 11 | 4 | 338 | 89 | 418 | 4.16e-21 | 94.0 |
MS.gene01038.t1 | MTR_7g101070 | 60.000 | 65 | 26 | 0 | 4 | 68 | 358 | 422 | 5.24e-20 | 91.3 |
MS.gene01038.t1 | MTR_7g112360 | 46.970 | 66 | 32 | 1 | 5 | 67 | 17 | 82 | 4.33e-16 | 75.5 |
MS.gene01038.t1 | MTR_7g112360 | 46.970 | 66 | 32 | 1 | 5 | 67 | 17 | 82 | 7.50e-16 | 73.2 |
MS.gene01038.t1 | MTR_7g069480 | 51.429 | 70 | 32 | 1 | 3 | 72 | 26 | 93 | 8.06e-16 | 79.0 |
MS.gene01038.t1 | MTR_5g012530 | 48.649 | 74 | 36 | 1 | 4 | 75 | 12 | 85 | 1.02e-15 | 78.6 |
MS.gene01038.t1 | MTR_2g087660 | 38.462 | 91 | 56 | 0 | 203 | 293 | 214 | 304 | 2.69e-15 | 76.3 |
MS.gene01038.t1 | MTR_2g087660 | 60.563 | 71 | 23 | 2 | 5 | 75 | 14 | 79 | 3.19e-12 | 67.0 |
MS.gene01038.t1 | MTR_6g027110 | 44.000 | 75 | 38 | 1 | 3 | 73 | 1 | 75 | 5.70e-15 | 71.6 |
MS.gene01038.t1 | MTR_5g065860 | 50.000 | 64 | 31 | 1 | 4 | 67 | 48 | 110 | 7.57e-15 | 71.2 |
MS.gene01038.t1 | MTR_6g471050 | 24.786 | 351 | 206 | 14 | 30 | 346 | 7 | 333 | 1.38e-14 | 74.7 |
MS.gene01038.t1 | MTR_1g110310 | 49.296 | 71 | 35 | 1 | 4 | 74 | 16 | 85 | 1.72e-14 | 74.3 |
MS.gene01038.t1 | MTR_6g027030 | 45.333 | 75 | 37 | 1 | 3 | 73 | 1 | 75 | 1.88e-14 | 72.0 |
MS.gene01038.t1 | MTR_8g022310 | 44.928 | 69 | 33 | 1 | 4 | 67 | 10 | 78 | 3.51e-14 | 71.2 |
MS.gene01038.t1 | MTR_4g085070 | 50.000 | 60 | 27 | 1 | 11 | 67 | 19 | 78 | 4.89e-14 | 69.3 |
MS.gene01038.t1 | MTR_8g022310 | 44.928 | 69 | 33 | 1 | 4 | 67 | 10 | 78 | 5.45e-14 | 70.1 |
MS.gene01038.t1 | MTR_8g022310 | 43.478 | 69 | 34 | 1 | 4 | 67 | 10 | 78 | 5.65e-14 | 70.5 |
MS.gene01038.t1 | MTR_8g022310 | 43.478 | 69 | 34 | 1 | 4 | 67 | 10 | 78 | 7.29e-14 | 70.5 |
MS.gene01038.t1 | MTR_5g035770 | 47.945 | 73 | 37 | 1 | 4 | 76 | 25 | 96 | 1.84e-13 | 71.2 |
MS.gene01038.t1 | MTR_5g065160 | 48.571 | 70 | 35 | 1 | 4 | 73 | 83 | 151 | 1.93e-13 | 71.2 |
MS.gene01038.t1 | MTR_5g065160 | 48.571 | 70 | 35 | 1 | 4 | 73 | 82 | 150 | 2.07e-13 | 71.2 |
MS.gene01038.t1 | MTR_6g026940 | 44.928 | 69 | 34 | 1 | 3 | 67 | 1 | 69 | 2.19e-13 | 68.2 |
MS.gene01038.t1 | MTR_1g052110 | 47.692 | 65 | 33 | 1 | 6 | 70 | 40 | 103 | 2.59e-13 | 69.7 |
MS.gene01038.t1 | MTR_4g023470 | 39.167 | 120 | 59 | 4 | 5 | 123 | 87 | 193 | 6.65e-13 | 69.7 |
MS.gene01038.t1 | MTR_2g436560 | 36.154 | 130 | 59 | 5 | 4 | 123 | 104 | 219 | 2.28e-12 | 67.8 |
MS.gene01038.t1 | MTR_7g092380 | 42.105 | 76 | 40 | 2 | 6 | 78 | 24 | 98 | 4.08e-12 | 66.2 |
MS.gene01038.t1 | MTR_1g029460 | 41.667 | 72 | 41 | 1 | 3 | 74 | 5 | 75 | 5.62e-12 | 66.6 |
MS.gene01038.t1 | MTR_5g004570 | 45.070 | 71 | 38 | 1 | 4 | 74 | 6 | 75 | 1.56e-11 | 63.9 |
MS.gene01038.t1 | MTR_4g094275 | 41.558 | 77 | 40 | 3 | 2 | 75 | 49 | 123 | 9.06e-11 | 60.5 |
MS.gene01038.t1 | MTR_4g109510 | 44.118 | 68 | 35 | 1 | 5 | 69 | 9 | 76 | 9.19e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01038.t1 | AT2G20560 | 74.571 | 350 | 70 | 4 | 1 | 345 | 1 | 336 | 0.0 | 516 |
MS.gene01038.t1 | AT4G28480 | 69.382 | 356 | 89 | 3 | 1 | 345 | 1 | 347 | 2.96e-170 | 478 |
MS.gene01038.t1 | AT3G08910 | 65.896 | 346 | 93 | 5 | 1 | 346 | 1 | 321 | 5.60e-160 | 451 |
MS.gene01038.t1 | AT5G01390 | 62.571 | 350 | 113 | 4 | 1 | 347 | 1 | 335 | 3.07e-154 | 436 |
MS.gene01038.t1 | AT4G28480 | 61.159 | 345 | 78 | 3 | 1 | 345 | 1 | 289 | 4.46e-142 | 404 |
MS.gene01038.t1 | AT5G25530 | 59.040 | 354 | 121 | 7 | 1 | 346 | 1 | 338 | 1.30e-139 | 399 |
MS.gene01038.t1 | AT5G25530 | 57.735 | 362 | 121 | 8 | 1 | 346 | 1 | 346 | 1.40e-136 | 392 |
MS.gene01038.t1 | AT1G10350 | 56.772 | 347 | 147 | 3 | 1 | 345 | 1 | 346 | 4.79e-130 | 375 |
MS.gene01038.t1 | AT3G47940 | 54.017 | 361 | 135 | 4 | 1 | 345 | 1 | 346 | 7.03e-129 | 373 |
MS.gene01038.t1 | AT1G59725 | 55.172 | 348 | 133 | 3 | 1 | 345 | 1 | 328 | 5.45e-127 | 367 |
MS.gene01038.t1 | AT2G20550 | 55.670 | 291 | 71 | 4 | 103 | 345 | 3 | 283 | 1.50e-98 | 293 |
MS.gene01038.t1 | AT2G20550 | 55.670 | 291 | 71 | 4 | 103 | 345 | 3 | 283 | 1.50e-98 | 293 |
MS.gene01038.t1 | AT5G01390 | 45.245 | 347 | 120 | 7 | 1 | 347 | 1 | 277 | 7.25e-89 | 268 |
MS.gene01038.t1 | AT5G01390 | 54.762 | 210 | 77 | 4 | 1 | 207 | 1 | 195 | 6.47e-68 | 213 |
MS.gene01038.t1 | AT5G01390 | 61.029 | 136 | 48 | 2 | 1 | 135 | 1 | 132 | 3.14e-49 | 165 |
MS.gene01038.t1 | AT5G01390 | 54.930 | 142 | 25 | 1 | 206 | 347 | 136 | 238 | 3.20e-43 | 149 |
MS.gene01038.t1 | AT1G44160 | 47.753 | 178 | 93 | 0 | 168 | 345 | 176 | 353 | 3.77e-47 | 163 |
MS.gene01038.t1 | AT3G62600 | 32.378 | 349 | 206 | 7 | 2 | 346 | 24 | 346 | 1.07e-44 | 157 |
MS.gene01038.t1 | AT1G11040 | 43.353 | 173 | 98 | 0 | 166 | 338 | 253 | 425 | 7.78e-43 | 154 |
MS.gene01038.t1 | AT3G44110 | 33.616 | 354 | 212 | 9 | 5 | 345 | 15 | 358 | 4.61e-40 | 146 |
MS.gene01038.t1 | AT5G22060 | 34.066 | 364 | 198 | 11 | 5 | 345 | 15 | 359 | 3.48e-38 | 141 |
MS.gene01038.t1 | AT3G44110 | 33.642 | 324 | 192 | 9 | 5 | 315 | 15 | 328 | 7.38e-34 | 128 |
MS.gene01038.t1 | AT1G80030 | 28.382 | 377 | 210 | 13 | 4 | 344 | 75 | 427 | 1.04e-28 | 116 |
MS.gene01038.t1 | AT1G80030 | 28.382 | 377 | 210 | 13 | 4 | 344 | 75 | 427 | 1.68e-28 | 115 |
MS.gene01038.t1 | AT1G80030 | 28.382 | 377 | 210 | 13 | 4 | 344 | 75 | 427 | 1.68e-28 | 115 |
MS.gene01038.t1 | AT1G80030 | 28.382 | 377 | 210 | 13 | 4 | 344 | 75 | 427 | 1.68e-28 | 115 |
MS.gene01038.t1 | AT2G22360 | 65.333 | 75 | 20 | 2 | 4 | 76 | 86 | 156 | 7.68e-22 | 96.3 |
MS.gene01038.t1 | AT2G22360 | 29.412 | 136 | 92 | 3 | 211 | 344 | 295 | 428 | 9.02e-12 | 66.2 |
MS.gene01038.t1 | AT3G17830 | 52.174 | 92 | 38 | 2 | 2 | 91 | 61 | 148 | 1.44e-20 | 93.2 |
MS.gene01038.t1 | AT4G39960 | 58.904 | 73 | 28 | 1 | 4 | 76 | 85 | 155 | 2.66e-20 | 92.0 |
MS.gene01038.t1 | AT4G39960 | 29.412 | 136 | 92 | 3 | 211 | 344 | 301 | 434 | 2.73e-12 | 67.8 |
MS.gene01038.t1 | AT4G39960 | 58.904 | 73 | 28 | 1 | 4 | 76 | 85 | 155 | 2.66e-20 | 92.0 |
MS.gene01038.t1 | AT4G39960 | 29.412 | 136 | 92 | 3 | 211 | 344 | 301 | 434 | 2.73e-12 | 67.8 |
MS.gene01038.t1 | AT5G48030 | 46.018 | 113 | 51 | 3 | 4 | 116 | 94 | 196 | 2.16e-17 | 83.2 |
MS.gene01038.t1 | AT5G16650 | 59.375 | 64 | 25 | 1 | 4 | 67 | 11 | 73 | 6.80e-17 | 77.8 |
MS.gene01038.t1 | AT5G03160 | 53.846 | 65 | 30 | 0 | 4 | 68 | 370 | 434 | 7.31e-17 | 82.0 |
MS.gene01038.t1 | AT5G16650 | 59.375 | 64 | 25 | 1 | 4 | 67 | 11 | 73 | 9.44e-17 | 76.3 |
MS.gene01038.t1 | AT1G59980 | 47.826 | 69 | 35 | 1 | 6 | 74 | 25 | 92 | 1.62e-15 | 77.0 |
MS.gene01038.t1 | AT2G41000 | 47.826 | 69 | 32 | 1 | 3 | 67 | 2 | 70 | 1.80e-15 | 74.7 |
MS.gene01038.t1 | AT1G56300 | 48.485 | 66 | 31 | 1 | 5 | 67 | 14 | 79 | 2.51e-15 | 72.0 |
MS.gene01038.t1 | AT1G56300 | 48.485 | 66 | 31 | 1 | 5 | 67 | 14 | 79 | 2.53e-15 | 73.2 |
MS.gene01038.t1 | AT1G68370 | 52.113 | 71 | 33 | 1 | 4 | 74 | 17 | 86 | 2.57e-15 | 77.0 |
MS.gene01038.t1 | AT1G59980 | 47.826 | 69 | 35 | 1 | 6 | 74 | 25 | 92 | 3.93e-15 | 76.3 |
MS.gene01038.t1 | AT2G41000 | 47.826 | 69 | 32 | 1 | 3 | 67 | 2 | 70 | 6.01e-15 | 72.8 |
MS.gene01038.t1 | AT3G08970 | 51.316 | 76 | 33 | 2 | 2 | 77 | 25 | 96 | 2.25e-14 | 74.7 |
MS.gene01038.t1 | AT3G08970 | 51.316 | 76 | 33 | 2 | 2 | 77 | 25 | 96 | 2.25e-14 | 74.7 |
MS.gene01038.t1 | AT2G35720 | 47.945 | 73 | 36 | 1 | 4 | 74 | 15 | 87 | 3.25e-14 | 73.9 |
MS.gene01038.t1 | AT2G21510 | 49.315 | 73 | 36 | 1 | 3 | 75 | 5 | 76 | 1.85e-13 | 70.9 |
MS.gene01038.t1 | AT2G21510 | 49.315 | 73 | 36 | 1 | 3 | 75 | 5 | 76 | 1.85e-13 | 70.9 |
MS.gene01038.t1 | AT2G21510 | 49.315 | 73 | 36 | 1 | 3 | 75 | 5 | 76 | 2.04e-13 | 70.9 |
MS.gene01038.t1 | AT2G21510 | 49.315 | 73 | 36 | 1 | 3 | 75 | 5 | 76 | 2.04e-13 | 70.9 |
MS.gene01038.t1 | AT2G21510 | 44.828 | 87 | 47 | 1 | 4 | 90 | 6 | 91 | 2.41e-13 | 70.5 |
MS.gene01038.t1 | AT2G33735 | 43.077 | 65 | 36 | 1 | 4 | 68 | 22 | 85 | 1.07e-12 | 64.7 |
MS.gene01038.t1 | AT2G33735 | 43.077 | 65 | 36 | 1 | 4 | 68 | 22 | 85 | 1.07e-12 | 64.7 |
MS.gene01038.t1 | AT1G71000 | 45.455 | 66 | 33 | 1 | 5 | 67 | 9 | 74 | 1.60e-12 | 65.5 |
MS.gene01038.t1 | AT1G24120 | 44.595 | 74 | 40 | 1 | 4 | 77 | 20 | 92 | 1.88e-12 | 68.6 |
MS.gene01038.t1 | AT5G06910 | 46.154 | 65 | 34 | 1 | 6 | 70 | 31 | 94 | 1.96e-12 | 67.4 |
MS.gene01038.t1 | AT1G71000 | 45.455 | 66 | 33 | 1 | 5 | 67 | 9 | 74 | 3.45e-12 | 64.3 |
MS.gene01038.t1 | AT4G39150 | 47.222 | 72 | 37 | 1 | 4 | 75 | 6 | 76 | 6.16e-12 | 66.2 |
MS.gene01038.t1 | AT4G39150 | 47.222 | 72 | 37 | 1 | 4 | 75 | 6 | 76 | 6.16e-12 | 66.2 |
MS.gene01038.t1 | AT4G39150 | 47.222 | 72 | 37 | 1 | 4 | 75 | 6 | 76 | 6.16e-12 | 66.2 |
MS.gene01038.t1 | AT5G05750 | 36.283 | 113 | 61 | 3 | 4 | 116 | 114 | 215 | 6.29e-12 | 65.9 |
MS.gene01038.t1 | AT3G14200 | 45.312 | 64 | 33 | 1 | 6 | 67 | 14 | 77 | 6.65e-12 | 65.1 |
MS.gene01038.t1 | AT1G21080 | 42.857 | 91 | 49 | 2 | 3 | 93 | 5 | 92 | 1.55e-11 | 65.5 |
MS.gene01038.t1 | AT1G21080 | 42.857 | 91 | 49 | 2 | 3 | 93 | 5 | 92 | 1.67e-11 | 65.5 |
MS.gene01038.t1 | AT3G13310 | 46.774 | 62 | 29 | 1 | 6 | 67 | 66 | 123 | 2.17e-11 | 62.0 |
MS.gene01038.t1 | AT4G13830 | 38.806 | 67 | 40 | 1 | 3 | 68 | 65 | 131 | 2.95e-11 | 61.6 |
MS.gene01038.t1 | AT5G49060 | 46.269 | 67 | 34 | 1 | 4 | 70 | 99 | 163 | 3.48e-11 | 64.3 |
MS.gene01038.t1 | AT5G49060 | 46.269 | 67 | 34 | 1 | 4 | 70 | 99 | 163 | 3.48e-11 | 64.3 |
MS.gene01038.t1 | AT4G13830 | 38.806 | 67 | 40 | 1 | 3 | 68 | 65 | 131 | 3.99e-11 | 61.6 |
MS.gene01038.t1 | AT1G72416 | 34.831 | 89 | 49 | 2 | 4 | 90 | 5 | 86 | 6.01e-11 | 61.6 |
MS.gene01038.t1 | AT3G12170 | 43.077 | 65 | 36 | 1 | 6 | 70 | 13 | 76 | 6.46e-11 | 62.4 |
Find 90 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGAATAACCTCTTCATAATT+TGG | 0.139392 | 2.4:+70436453 | None:intergenic |
CCCTTCTTTGAAGGATCTTT+TGG | 0.174093 | 2.4:+70436411 | None:intergenic |
TTCAGATATCTCTTTGAATT+TGG | 0.183628 | 2.4:+70437968 | None:intergenic |
TTGACTTCTGAGCAGAAATT+TGG | 0.209442 | 2.4:-70436348 | MS.gene01038:CDS |
AAGATATCGTTTGCGTTTCT+TGG | 0.221316 | 2.4:+70437701 | None:intergenic |
GGATGAATCACATTGTTTAT+AGG | 0.244976 | 2.4:+70436474 | None:intergenic |
TTATTTGAGGGATTCTTATC+AGG | 0.267987 | 2.4:+70438005 | None:intergenic |
TATGGAGAAGAAGGGCTAAA+AGG | 0.276981 | 2.4:-70437806 | MS.gene01038:CDS |
GGTTGCTCATTTCCTTTCTC+AGG | 0.283976 | 2.4:+70436663 | None:intergenic |
TCGGGTATTCAAGCCCGTTT+GGG | 0.303828 | 2.4:-70437667 | MS.gene01038:CDS |
TGCTCAGAAGTCAACCTTGC+TGG | 0.309488 | 2.4:+70436357 | None:intergenic |
AGTCAAGCCAGGGTGGAAAA+AGG | 0.321865 | 2.4:-70436703 | MS.gene01038:CDS |
TTCGGGTATTCAAGCCCGTT+TGG | 0.333587 | 2.4:-70437668 | MS.gene01038:CDS |
AAAGCAATTTATGATCAATA+TGG | 0.348727 | 2.4:-70437824 | MS.gene01038:CDS |
ATTTGGAATCAAGAAACTTC+TGG | 0.350613 | 2.4:-70436331 | MS.gene01038:CDS |
CTTATCAGGGTGCCACTTCA+TGG | 0.353470 | 2.4:+70438019 | None:intergenic |
CTTCAAAGAAGGGTAATCTT+AGG | 0.357619 | 2.4:-70436401 | MS.gene01038:CDS |
AGGTAGGCCTTTGCGTCAAC+AGG | 0.359224 | 2.4:-70437540 | MS.gene01038:CDS |
TACAAGAGATGGCAATGATT+TGG | 0.359667 | 2.4:-70436583 | MS.gene01038:CDS |
TCACTTGCAGAAGCTTTAAC+AGG | 0.361103 | 2.4:-70436543 | MS.gene01038:CDS |
CTAAGATTACCCTTCTTTGA+AGG | 0.367122 | 2.4:+70436402 | None:intergenic |
AGCCTTGAGGAACTCTATAA+AGG | 0.369722 | 2.4:-70437476 | MS.gene01038:CDS |
AGATCTGCTGGTATCACATT+TGG | 0.371997 | 2.4:+70436642 | None:intergenic |
AGATCCTTTGGTGGAATGTT+TGG | 0.375285 | 2.4:-70437596 | MS.gene01038:CDS |
CTCAGCGTCTTTCTTATTTG+AGG | 0.384413 | 2.4:+70437992 | None:intergenic |
GGAATAGGCATACCTTCCTT+TGG | 0.388950 | 2.4:+70436432 | None:intergenic |
GAGATGGACCAACAACGTTT+AGG | 0.400923 | 2.4:-70437730 | MS.gene01038:CDS |
AGAGGTGGAGCCAGATCCTT+TGG | 0.409550 | 2.4:-70437608 | MS.gene01038:CDS |
GCCTTGAGGAACTCTATAAA+GGG | 0.442299 | 2.4:-70437475 | MS.gene01038:CDS |
AAACTGTAATGTTACCTCAT+AGG | 0.442550 | 2.4:+70437944 | None:intergenic |
TATGATCAATATGGAGAAGA+AGG | 0.445033 | 2.4:-70437815 | MS.gene01038:CDS |
TCAGCGTCTTTCTTATTTGA+GGG | 0.447077 | 2.4:+70437993 | None:intergenic |
ATGGAGAAGAAGGGCTAAAA+GGG | 0.457737 | 2.4:-70437805 | MS.gene01038:CDS |
TTAACAATTGAAGTCAAGCC+AGG | 0.465128 | 2.4:-70436714 | MS.gene01038:CDS |
TCCAAAAGATCCTTCAAAGA+AGG | 0.470055 | 2.4:-70436412 | MS.gene01038:CDS |
CACCTCAAGATGCTGCTGGT+GGG | 0.471293 | 2.4:-70437772 | MS.gene01038:CDS |
CTTCTTCAACTCTTCTTCTG+TGG | 0.473979 | 2.4:+70438058 | None:intergenic |
GTTGCTCATTTCCTTTCTCA+GGG | 0.474664 | 2.4:+70436664 | None:intergenic |
TATTTGAGGGATTCTTATCA+GGG | 0.478544 | 2.4:+70438006 | None:intergenic |
GGATTGAACCTAAACGTTGT+TGG | 0.479222 | 2.4:+70437722 | None:intergenic |
TCCTTTGGTGGAATGTTTGG+TGG | 0.483436 | 2.4:-70437593 | MS.gene01038:CDS |
GTTCGTCTCACAACACTAGA+TGG | 0.485111 | 2.4:-70436513 | MS.gene01038:CDS |
ATAACAAATATAAGATCTGC+TGG | 0.490598 | 2.4:+70436630 | None:intergenic |
AAACATTCCACCAAAGGATC+TGG | 0.493654 | 2.4:+70437598 | None:intergenic |
GTCTCACAACACTAGATGGC+AGG | 0.501582 | 2.4:-70436509 | MS.gene01038:CDS |
AAAATCACATTCCCTGAGAA+AGG | 0.501962 | 2.4:-70436675 | MS.gene01038:CDS |
ATTGTTAAGATTTCCTCCAC+TGG | 0.504925 | 2.4:+70436729 | None:intergenic |
GCTGGTGGGAATGGAATGAG+AGG | 0.505271 | 2.4:-70437626 | MS.gene01038:CDS |
ACCTCAAGATGCTGCTGGTG+GGG | 0.512127 | 2.4:-70437771 | MS.gene01038:CDS |
ACATTCTTCCAAAGTGGAGA+TGG | 0.515684 | 2.4:-70437746 | MS.gene01038:CDS |
CCAAAAGATCCTTCAAAGAA+GGG | 0.516873 | 2.4:-70436411 | MS.gene01038:CDS |
CATAGTGTATTTACAAGAGA+TGG | 0.519390 | 2.4:-70436594 | MS.gene01038:CDS |
TAGAGTTCCTCAAGGCTACA+AGG | 0.520626 | 2.4:+70437482 | None:intergenic |
AGAGATATCTGAAGCCTATG+AGG | 0.524531 | 2.4:-70437958 | MS.gene01038:intron |
CGAGGACCCTGTTGACGCAA+AGG | 0.535042 | 2.4:+70437533 | None:intergenic |
CCACCTCAAGATGCTGCTGG+TGG | 0.539888 | 2.4:-70437773 | MS.gene01038:CDS |
CCAGCAGCATCTTGAGGTGG+TGG | 0.542898 | 2.4:+70437776 | None:intergenic |
ATCGAAAACTTGCCATGAAG+TGG | 0.546006 | 2.4:-70438031 | MS.gene01038:CDS |
TTGTTGGTCCATCTCCACTT+TGG | 0.559606 | 2.4:+70437738 | None:intergenic |
TTTCTTCATTTGATGAAGGT+AGG | 0.563556 | 2.4:-70437556 | MS.gene01038:CDS |
GCCCCACCAGCAGCATCTTG+AGG | 0.565292 | 2.4:+70437770 | None:intergenic |
TCAATAGCAGCTGCCTTGCG+AGG | 0.571839 | 2.4:+70437515 | None:intergenic |
CACAGAAGAAGAGTTGAAGA+AGG | 0.577915 | 2.4:-70438057 | MS.gene01038:CDS |
TTATGAAGAGGTTATTCCAA+AGG | 0.579708 | 2.4:-70436448 | MS.gene01038:CDS |
AGGGAAATTGCTGATGCAAG+TGG | 0.584073 | 2.4:-70437428 | MS.gene01038:CDS |
CGGGTATTCAAGCCCGTTTG+GGG | 0.586346 | 2.4:-70437666 | MS.gene01038:CDS |
GCGTCAACAGGGTCCTCGCA+AGG | 0.592745 | 2.4:-70437528 | MS.gene01038:CDS |
GGGAAATTGCTGATGCAAGT+GGG | 0.597387 | 2.4:-70437427 | MS.gene01038:intron |
TCTCTTGTAAATACACTATG+TGG | 0.600191 | 2.4:+70436597 | None:intergenic |
GAAGAGGTTATTCCAAAGGA+AGG | 0.600896 | 2.4:-70436444 | MS.gene01038:CDS |
TTAATATCAAGTTTCCAGCA+AGG | 0.601452 | 2.4:-70436371 | MS.gene01038:CDS |
GATTCATCCAAATTATGAAG+AGG | 0.602330 | 2.4:-70436460 | MS.gene01038:CDS |
TAGATTGCCTTGTAGCCTTG+AGG | 0.603463 | 2.4:-70437489 | MS.gene01038:CDS |
CCACCACCTCAAGATGCTGC+TGG | 0.609111 | 2.4:-70437776 | MS.gene01038:CDS |
GGTGGAGCCAGATCCTTTGG+TGG | 0.611596 | 2.4:-70437605 | MS.gene01038:CDS |
AGAAACTTCTGGCACCGTAG+TGG | 0.613726 | 2.4:-70436320 | None:intergenic |
ATGATCAATATGGAGAAGAA+GGG | 0.615681 | 2.4:-70437814 | MS.gene01038:CDS |
GGTGGGAATGGAATGAGAGG+TGG | 0.620935 | 2.4:-70437623 | MS.gene01038:CDS |
GGGGCTACATTCTTCCAAAG+TGG | 0.625228 | 2.4:-70437752 | MS.gene01038:CDS |
CCACCAGCAGCATCTTGAGG+TGG | 0.626886 | 2.4:+70437773 | None:intergenic |
ACCACCAAACATTCCACCAA+AGG | 0.627179 | 2.4:+70437592 | None:intergenic |
CAGGAAAACTATGCCAGTGG+AGG | 0.633181 | 2.4:-70436742 | MS.gene01038:CDS |
TTGCAGGAAAACTATGCCAG+TGG | 0.635655 | 2.4:-70436745 | MS.gene01038:intron |
TCCCTTTATAGAGTTCCTCA+AGG | 0.641392 | 2.4:+70437474 | None:intergenic |
TCTCACAACACTAGATGGCA+GGG | 0.644540 | 2.4:-70436508 | MS.gene01038:CDS |
TAACAATTGAAGTCAAGCCA+GGG | 0.646777 | 2.4:-70436713 | MS.gene01038:CDS |
CAATTGAAGTCAAGCCAGGG+TGG | 0.649151 | 2.4:-70436710 | MS.gene01038:CDS |
GGGTATTCAAGCCCGTTTGG+GGG | 0.650237 | 2.4:-70437665 | MS.gene01038:CDS |
CTCAAATAAGAAAGACGCTG+AGG | 0.667226 | 2.4:-70437991 | MS.gene01038:CDS |
GGTAGGCCTTTGCGTCAACA+GGG | 0.671612 | 2.4:-70437539 | MS.gene01038:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TCAATAATAATTTAAAAAAC+TGG | - | chr2.4:70437333-70437352 | MS.gene01038:intron | 10.0% |
!! | AAAGCAATTTATGATCAATA+TGG | - | chr2.4:70436600-70436619 | MS.gene01038:CDS | 20.0% |
!! | ACAACTTGCAATTTAAAAAT+CGG | + | chr2.4:70437547-70437566 | None:intergenic | 20.0% |
!! | TAGAAATTCTGAATATTAAC+TGG | - | chr2.4:70436537-70436556 | MS.gene01038:CDS | 20.0% |
!! | TCTAAATTATTTCAAAAAGC+AGG | + | chr2.4:70437143-70437162 | None:intergenic | 20.0% |
! | AAAAGTTGAACAGTTGAATT+TGG | - | chr2.4:70437445-70437464 | MS.gene01038:CDS | 25.0% |
! | ATAACAAATATAAGATCTGC+TGG | + | chr2.4:70437797-70437816 | None:intergenic | 25.0% |
! | ATAATTTAGATGATGAAGCA+CGG | - | chr2.4:70437269-70437288 | MS.gene01038:intron | 25.0% |
! | ATTGTTACATCACTATATGT+TGG | - | chr2.4:70437044-70437063 | MS.gene01038:intron | 25.0% |
! | CAAAAAGATGAAGATTTCAA+GGG | - | chr2.4:70436977-70436996 | MS.gene01038:intron | 25.0% |
! | CTAATTATTTATCTCTTTGC+AGG | - | chr2.4:70437663-70437682 | MS.gene01038:CDS | 25.0% |
! | CTGCAAAGAGATAAATAATT+AGG | + | chr2.4:70437665-70437684 | None:intergenic | 25.0% |
! | TCAGAATTTCTATGAAGAAT+TGG | + | chr2.4:70436529-70436548 | None:intergenic | 25.0% |
! | TTAGATTCCTCAAAATATGT+TGG | - | chr2.4:70437070-70437089 | MS.gene01038:intron | 25.0% |
! | TTCAGATATCTCTTTGAATT+TGG | + | chr2.4:70436459-70436478 | None:intergenic | 25.0% |
!! | ATGTTTTCTTCATTTGATGA+AGG | - | chr2.4:70436864-70436883 | MS.gene01038:intron | 25.0% |
!! | ATTAGATCCAACATATTTTG+AGG | + | chr2.4:70437080-70437099 | None:intergenic | 25.0% |
!! | TCATAAATTGCTTTCTTTTG+TGG | + | chr2.4:70436594-70436613 | None:intergenic | 25.0% |
!!! | AAATTGCAAGTTGTTTTTGT+GGG | - | chr2.4:70437553-70437572 | MS.gene01038:CDS | 25.0% |
!!! | TAAATTGCAAGTTGTTTTTG+TGG | - | chr2.4:70437552-70437571 | MS.gene01038:CDS | 25.0% |
!!! | TTCTGAATATTAACTGGTTT+TGG | - | chr2.4:70436543-70436562 | MS.gene01038:CDS | 25.0% |
AAACTGTAATGTTACCTCAT+AGG | + | chr2.4:70436483-70436502 | None:intergenic | 30.0% | |
AATAAAACAATGACACTCCT+TGG | + | chr2.4:70437420-70437439 | None:intergenic | 30.0% | |
AGCAAAAATTCAGCCAAAAT+TGG | + | chr2.4:70437626-70437645 | None:intergenic | 30.0% | |
ATCAAGATAGACATACAGAT+AGG | - | chr2.4:70437101-70437120 | MS.gene01038:intron | 30.0% | |
ATGATCAATATGGAGAAGAA+GGG | - | chr2.4:70436610-70436629 | MS.gene01038:CDS | 30.0% | |
CATAGTGTATTTACAAGAGA+TGG | - | chr2.4:70437830-70437849 | MS.gene01038:CDS | 30.0% | |
CCAAAAAGATGAAGATTTCA+AGG | - | chr2.4:70436976-70436995 | MS.gene01038:intron | 30.0% | |
GATTCATCCAAATTATGAAG+AGG | - | chr2.4:70437964-70437983 | MS.gene01038:CDS | 30.0% | |
GCAAAAATTCAGCCAAAATT+GGG | + | chr2.4:70437625-70437644 | None:intergenic | 30.0% | |
GGAATAACCTCTTCATAATT+TGG | + | chr2.4:70437974-70437993 | None:intergenic | 30.0% | |
GGATGAATCACATTGTTTAT+AGG | + | chr2.4:70437953-70437972 | None:intergenic | 30.0% | |
TAAATGTGATCTTCCATCAT+AGG | - | chr2.4:70437232-70437251 | MS.gene01038:intron | 30.0% | |
TATGATCAATATGGAGAAGA+AGG | - | chr2.4:70436609-70436628 | MS.gene01038:CDS | 30.0% | |
TATTTGAGGGATTCTTATCA+GGG | + | chr2.4:70436421-70436440 | None:intergenic | 30.0% | |
TCTCTTGTAAATACACTATG+TGG | + | chr2.4:70437830-70437849 | None:intergenic | 30.0% | |
TTAATATCAAGTTTCCAGCA+AGG | - | chr2.4:70438053-70438072 | MS.gene01038:CDS | 30.0% | |
TTATGAAGAGGTTATTCCAA+AGG | - | chr2.4:70437976-70437995 | MS.gene01038:CDS | 30.0% | |
TTATTTGAGGGATTCTTATC+AGG | + | chr2.4:70436422-70436441 | None:intergenic | 30.0% | |
TTTCTTCATTTGATGAAGGT+AGG | - | chr2.4:70436868-70436887 | MS.gene01038:intron | 30.0% | |
! | AGACTACTACAAGATTTTGA+AGG | - | chr2.4:70436331-70436350 | MS.gene01038:CDS | 30.0% |
! | ATATCTTTGCAGAGTTTTTC+GGG | - | chr2.4:70436739-70436758 | MS.gene01038:CDS | 30.0% |
! | ATTTGGAATCAAGAAACTTC+TGG | - | chr2.4:70438093-70438112 | MS.gene01038:CDS | 30.0% |
! | CCTTGAAATCTTCATCTTTT+TGG | + | chr2.4:70436979-70436998 | None:intergenic | 30.0% |
! | GATATCTTTGCAGAGTTTTT+CGG | - | chr2.4:70436738-70436757 | MS.gene01038:CDS | 30.0% |
!!! | AATTGCAAGTTGTTTTTGTG+GGG | - | chr2.4:70437554-70437573 | MS.gene01038:CDS | 30.0% |
!!! | AATTTTGGCTGAATTTTTGC+TGG | - | chr2.4:70437625-70437644 | MS.gene01038:CDS | 30.0% |
!!! | TGGTTTTGGTTTTTTGATGA+AGG | - | chr2.4:70436557-70436576 | MS.gene01038:CDS | 30.0% |
!!! | TTTGAAGGATCTTTTGGAAT+AGG | + | chr2.4:70438010-70438029 | None:intergenic | 30.0% |
AAAATCACATTCCCTGAGAA+AGG | - | chr2.4:70437749-70437768 | MS.gene01038:CDS | 35.0% | |
AAGATATCGTTTGCGTTTCT+TGG | + | chr2.4:70436726-70436745 | None:intergenic | 35.0% | |
ACATACAGATAGGAGATTGA+TGG | - | chr2.4:70437111-70437130 | MS.gene01038:intron | 35.0% | |
ATTGTTAAGATTTCCTCCAC+TGG | + | chr2.4:70437698-70437717 | None:intergenic | 35.0% | |
CCAAAAGATCCTTCAAAGAA+GGG | - | chr2.4:70438013-70438032 | MS.gene01038:CDS | 35.0% | |
CTAAGATTACCCTTCTTTGA+AGG | + | chr2.4:70438025-70438044 | None:intergenic | 35.0% | |
CTTCAAAGAAGGGTAATCTT+AGG | - | chr2.4:70438023-70438042 | MS.gene01038:CDS | 35.0% | |
GAAGTTAAGTCATCCTATGA+TGG | + | chr2.4:70437248-70437267 | None:intergenic | 35.0% | |
GAGAATTGATGTTGAACTTC+TGG | + | chr2.4:70437590-70437609 | None:intergenic | 35.0% | |
TAACAATTGAAGTCAAGCCA+GGG | - | chr2.4:70437711-70437730 | MS.gene01038:CDS | 35.0% | |
TACAAGAGATGGCAATGATT+TGG | - | chr2.4:70437841-70437860 | MS.gene01038:CDS | 35.0% | |
TCCAAAAGATCCTTCAAAGA+AGG | - | chr2.4:70438012-70438031 | MS.gene01038:CDS | 35.0% | |
TTAACAATTGAAGTCAAGCC+AGG | - | chr2.4:70437710-70437729 | MS.gene01038:CDS | 35.0% | |
TTGAACACAAAATCTACCGA+AGG | + | chr2.4:70437501-70437520 | None:intergenic | 35.0% | |
TTGACTTCTGAGCAGAAATT+TGG | - | chr2.4:70438076-70438095 | MS.gene01038:CDS | 35.0% | |
! | AGATTTTGTGTTCAACGCAT+TGG | - | chr2.4:70437506-70437525 | MS.gene01038:CDS | 35.0% |
! | CAGTTGAATTTGGTTCAGTA+TGG | - | chr2.4:70437455-70437474 | MS.gene01038:CDS | 35.0% |
! | GAATTTGGTTCAGTATGGTA+GGG | - | chr2.4:70437460-70437479 | MS.gene01038:CDS | 35.0% |
! | TCAGCGTCTTTCTTATTTGA+GGG | + | chr2.4:70436434-70436453 | None:intergenic | 35.0% |
! | TGAATTTGGTTCAGTATGGT+AGG | - | chr2.4:70437459-70437478 | MS.gene01038:CDS | 35.0% |
! | TGAGTCATAAGTCCCAATTT+TGG | - | chr2.4:70437610-70437629 | MS.gene01038:CDS | 35.0% |
AAACATTCCACCAAAGGATC+TGG | + | chr2.4:70436829-70436848 | None:intergenic | 40.0% | |
ACAATGACACTCCTTGGATT+AGG | + | chr2.4:70437414-70437433 | None:intergenic | 40.0% | |
ACATTCTTCCAAAGTGGAGA+TGG | - | chr2.4:70436678-70436697 | MS.gene01038:CDS | 40.0% | |
AGATCCTTTGGTGGAATGTT+TGG | - | chr2.4:70436828-70436847 | MS.gene01038:intron | 40.0% | |
AGATCTGCTGGTATCACATT+TGG | + | chr2.4:70437785-70437804 | None:intergenic | 40.0% | |
AGCCTTGAGGAACTCTATAA+AGG | - | chr2.4:70436948-70436967 | MS.gene01038:intron | 40.0% | |
ATCGAAAACTTGCCATGAAG+TGG | - | chr2.4:70436393-70436412 | MS.gene01038:CDS | 40.0% | |
ATGGAGAAGAAGGGCTAAAA+GGG | - | chr2.4:70436619-70436638 | MS.gene01038:CDS | 40.0% | |
CACAGAAGAAGAGTTGAAGA+AGG | - | chr2.4:70436367-70436386 | MS.gene01038:CDS | 40.0% | |
CTCAAATAAGAAAGACGCTG+AGG | - | chr2.4:70436433-70436452 | MS.gene01038:CDS | 40.0% | |
CTTCTTCAACTCTTCTTCTG+TGG | + | chr2.4:70436369-70436388 | None:intergenic | 40.0% | |
GAAGAGGTTATTCCAAAGGA+AGG | - | chr2.4:70437980-70437999 | MS.gene01038:CDS | 40.0% | |
GCCTTGAGGAACTCTATAAA+GGG | - | chr2.4:70436949-70436968 | MS.gene01038:intron | 40.0% | |
GGATTGAACCTAAACGTTGT+TGG | + | chr2.4:70436705-70436724 | None:intergenic | 40.0% | |
GTTGCTCATTTCCTTTCTCA+GGG | + | chr2.4:70437763-70437782 | None:intergenic | 40.0% | |
TATGGAGAAGAAGGGCTAAA+AGG | - | chr2.4:70436618-70436637 | MS.gene01038:CDS | 40.0% | |
TCCCTTTATAGAGTTCCTCA+AGG | + | chr2.4:70436953-70436972 | None:intergenic | 40.0% | |
! | AGAGATATCTGAAGCCTATG+AGG | - | chr2.4:70436466-70436485 | MS.gene01038:CDS | 40.0% |
! | CTCAGCGTCTTTCTTATTTG+AGG | + | chr2.4:70436435-70436454 | None:intergenic | 40.0% |
! | TCACTTGCAGAAGCTTTAAC+AGG | - | chr2.4:70437881-70437900 | MS.gene01038:intron | 40.0% |
!! | CCCTTCTTTGAAGGATCTTT+TGG | + | chr2.4:70438016-70438035 | None:intergenic | 40.0% |
!! | TTGTGTTCAACGCATTGGTT+TGG | - | chr2.4:70437511-70437530 | MS.gene01038:CDS | 40.0% |
ACCACCAAACATTCCACCAA+AGG | + | chr2.4:70436835-70436854 | None:intergenic | 45.0% | |
AGGGAAATTGCTGATGCAAG+TGG | - | chr2.4:70436996-70437015 | MS.gene01038:intron | 45.0% | |
CACAGACATCAGATGTGACA+TGG | - | chr2.4:70437293-70437312 | MS.gene01038:intron | 45.0% | |
GAGATGGACCAACAACGTTT+AGG | - | chr2.4:70436694-70436713 | MS.gene01038:CDS | 45.0% | |
GGAATAGGCATACCTTCCTT+TGG | + | chr2.4:70437995-70438014 | None:intergenic | 45.0% | |
GGGAAATTGCTGATGCAAGT+GGG | - | chr2.4:70436997-70437016 | MS.gene01038:intron | 45.0% | |
GGTTGCTCATTTCCTTTCTC+AGG | + | chr2.4:70437764-70437783 | None:intergenic | 45.0% | |
GTTCGTCTCACAACACTAGA+TGG | - | chr2.4:70437911-70437930 | MS.gene01038:intron | 45.0% | |
TAGAGTTCCTCAAGGCTACA+AGG | + | chr2.4:70436945-70436964 | None:intergenic | 45.0% | |
TCCTTTGGTGGAATGTTTGG+TGG | - | chr2.4:70436831-70436850 | MS.gene01038:intron | 45.0% | |
TCTCACAACACTAGATGGCA+GGG | - | chr2.4:70437916-70437935 | MS.gene01038:intron | 45.0% | |
TTGCAGGAAAACTATGCCAG+TGG | - | chr2.4:70437679-70437698 | MS.gene01038:CDS | 45.0% | |
TTGTTGGTCCATCTCCACTT+TGG | + | chr2.4:70436689-70436708 | None:intergenic | 45.0% | |
! | TAGATTGCCTTGTAGCCTTG+AGG | - | chr2.4:70436935-70436954 | MS.gene01038:intron | 45.0% |
! | TTTGTACCCTTTTTCCACCC+TGG | + | chr2.4:70437731-70437750 | None:intergenic | 45.0% |
AGTCAAGCCAGGGTGGAAAA+AGG | - | chr2.4:70437721-70437740 | MS.gene01038:CDS | 50.0% | |
ATTCCTCCCATTCCCCCAAA+CGG | + | chr2.4:70436774-70436793 | None:intergenic | 50.0% | |
CAATTGAAGTCAAGCCAGGG+TGG | - | chr2.4:70437714-70437733 | MS.gene01038:CDS | 50.0% | |
CACTGGACACACCTAATCCA+AGG | - | chr2.4:70437400-70437419 | MS.gene01038:intron | 50.0% | |
CAGGAAAACTATGCCAGTGG+AGG | - | chr2.4:70437682-70437701 | MS.gene01038:CDS | 50.0% | |
GACCAAGACAACGAGTCCTT+CGG | - | chr2.4:70437482-70437501 | MS.gene01038:CDS | 50.0% | |
GGATTAGGTGTGTCCAGTGT+CGG | + | chr2.4:70437399-70437418 | None:intergenic | 50.0% | |
GGGGCTACATTCTTCCAAAG+TGG | - | chr2.4:70436672-70436691 | MS.gene01038:CDS | 50.0% | |
GTCAAGCCAGGGTGGAAAAA+GGG | - | chr2.4:70437722-70437741 | MS.gene01038:CDS | 50.0% | |
GTCTCACAACACTAGATGGC+AGG | - | chr2.4:70437915-70437934 | MS.gene01038:intron | 50.0% | |
TACCGAAGGACTCGTTGTCT+TGG | + | chr2.4:70437487-70437506 | None:intergenic | 50.0% | |
TCGGGTATTCAAGCCCGTTT+GGG | - | chr2.4:70436757-70436776 | MS.gene01038:intron | 50.0% | |
TGCTCAGAAGTCAACCTTGC+TGG | + | chr2.4:70438070-70438089 | None:intergenic | 50.0% | |
TTCGGGTATTCAAGCCCGTT+TGG | - | chr2.4:70436756-70436775 | MS.gene01038:intron | 50.0% | |
TTTGGGGGAATGGGAGGAAT+GGG | - | chr2.4:70436774-70436793 | MS.gene01038:intron | 50.0% | |
!! | CTTATCAGGGTGCCACTTCA+TGG | + | chr2.4:70436408-70436427 | None:intergenic | 50.0% |
ACCTCAAGATGCTGCTGGTG+GGG | - | chr2.4:70436653-70436672 | MS.gene01038:CDS | 55.0% | |
AGAGGTGGAGCCAGATCCTT+TGG | - | chr2.4:70436816-70436835 | MS.gene01038:intron | 55.0% | |
AGGTAGGCCTTTGCGTCAAC+AGG | - | chr2.4:70436884-70436903 | MS.gene01038:intron | 55.0% | |
CACCTCAAGATGCTGCTGGT+GGG | - | chr2.4:70436652-70436671 | MS.gene01038:CDS | 55.0% | |
CGGGTATTCAAGCCCGTTTG+GGG | - | chr2.4:70436758-70436777 | MS.gene01038:intron | 55.0% | |
GCTGGTGGGAATGGAATGAG+AGG | - | chr2.4:70436798-70436817 | MS.gene01038:intron | 55.0% | |
GGGTATTCAAGCCCGTTTGG+GGG | - | chr2.4:70436759-70436778 | MS.gene01038:intron | 55.0% | |
GGTAGGCCTTTGCGTCAACA+GGG | - | chr2.4:70436885-70436904 | MS.gene01038:intron | 55.0% | |
GGTGGGAATGGAATGAGAGG+TGG | - | chr2.4:70436801-70436820 | MS.gene01038:intron | 55.0% | |
GTTTGGGGGAATGGGAGGAA+TGG | - | chr2.4:70436773-70436792 | MS.gene01038:intron | 55.0% | |
TCAAGCCCGTTTGGGGGAAT+GGG | - | chr2.4:70436765-70436784 | MS.gene01038:intron | 55.0% | |
TCAATAGCAGCTGCCTTGCG+AGG | + | chr2.4:70436912-70436931 | None:intergenic | 55.0% | |
TTCAAGCCCGTTTGGGGGAA+TGG | - | chr2.4:70436764-70436783 | MS.gene01038:intron | 55.0% | |
TTCCTCCCATTCCCCCAAAC+GGG | + | chr2.4:70436773-70436792 | None:intergenic | 55.0% | |
TTGGGGGAATGGGAGGAATG+GGG | - | chr2.4:70436775-70436794 | MS.gene01038:intron | 55.0% | |
CCACCACCTCAAGATGCTGC+TGG | - | chr2.4:70436648-70436667 | MS.gene01038:CDS | 60.0% | |
CCACCAGCAGCATCTTGAGG+TGG | + | chr2.4:70436654-70436673 | None:intergenic | 60.0% | |
CCACCTCAAGATGCTGCTGG+TGG | - | chr2.4:70436651-70436670 | MS.gene01038:CDS | 60.0% | |
CCAGCAGCATCTTGAGGTGG+TGG | + | chr2.4:70436651-70436670 | None:intergenic | 60.0% | |
CGAGGACCCTGTTGACGCAA+AGG | + | chr2.4:70436894-70436913 | None:intergenic | 60.0% | |
GGTGGAGCCAGATCCTTTGG+TGG | - | chr2.4:70436819-70436838 | MS.gene01038:intron | 60.0% | |
TGGGGGAATGGGAGGAATGG+GGG | - | chr2.4:70436776-70436795 | MS.gene01038:intron | 60.0% | |
AGCCCGTTTGGGGGAATGGG+AGG | - | chr2.4:70436768-70436787 | MS.gene01038:intron | 65.0% | |
ATGGGAGGAATGGGGGCTGG+TGG | - | chr2.4:70436783-70436802 | MS.gene01038:intron | 65.0% | |
GCCCCACCAGCAGCATCTTG+AGG | + | chr2.4:70436657-70436676 | None:intergenic | 65.0% | |
GCGTCAACAGGGTCCTCGCA+AGG | - | chr2.4:70436896-70436915 | MS.gene01038:intron | 65.0% | |
GGAATGGGAGGAATGGGGGC+TGG | - | chr2.4:70436780-70436799 | MS.gene01038:intron | 65.0% | |
! | GGAATGGGGGCTGGTGGGAA+TGG | - | chr2.4:70436789-70436808 | MS.gene01038:intron | 65.0% |
! | TGGGAGGAATGGGGGCTGGT+GGG | - | chr2.4:70436784-70436803 | MS.gene01038:intron | 65.0% |
CGCTGACGCGTGTCCGACAC+TGG | - | chr2.4:70437383-70437402 | MS.gene01038:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 70436323 | 70438123 | 70436323 | ID=MS.gene01038 |
chr2.4 | mRNA | 70436323 | 70438123 | 70436323 | ID=MS.gene01038.t1;Parent=MS.gene01038 |
chr2.4 | exon | 70437959 | 70438123 | 70437959 | ID=MS.gene01038.t1.exon1;Parent=MS.gene01038.t1 |
chr2.4 | CDS | 70437959 | 70438123 | 70437959 | ID=cds.MS.gene01038.t1;Parent=MS.gene01038.t1 |
chr2.4 | exon | 70437428 | 70437867 | 70437428 | ID=MS.gene01038.t1.exon2;Parent=MS.gene01038.t1 |
chr2.4 | CDS | 70437428 | 70437867 | 70437428 | ID=cds.MS.gene01038.t1;Parent=MS.gene01038.t1 |
chr2.4 | exon | 70436323 | 70436761 | 70436323 | ID=MS.gene01038.t1.exon3;Parent=MS.gene01038.t1 |
chr2.4 | CDS | 70436323 | 70436761 | 70436323 | ID=cds.MS.gene01038.t1;Parent=MS.gene01038.t1 |
Gene Sequence |
Protein sequence |