AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037465


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037465.t1 MTR_4g015840 99.413 341 2 0 1 341 1 341 0.0 692
MS.gene037465.t1 MTR_4g015840 99.621 264 1 0 78 341 1 264 0.0 533
MS.gene037465.t1 MTR_2g014470 70.640 344 91 4 1 339 1 339 1.28e-170 478
MS.gene037465.t1 MTR_4g078850 67.236 351 100 4 1 341 1 346 1.00e-169 476
MS.gene037465.t1 MTR_2g090705 63.143 350 103 5 1 339 1 335 1.89e-153 434
MS.gene037465.t1 MTR_2g014480 60.290 345 118 6 1 332 1 339 1.13e-135 389
MS.gene037465.t1 MTR_3g108020 58.235 340 125 5 1 338 1 325 1.27e-128 371
MS.gene037465.t1 MTR_5g037880 56.571 175 76 0 165 339 101 275 6.80e-68 214
MS.gene037465.t1 MTR_5g037880 54.667 75 27 1 4 71 5 79 1.97e-19 87.0
MS.gene037465.t1 MTR_7g109340 37.318 343 180 8 5 338 27 343 1.04e-54 182
MS.gene037465.t1 MTR_3g437840 47.205 161 85 0 179 339 2 162 7.28e-51 167
MS.gene037465.t1 MTR_3g437360 49.123 171 81 3 148 316 165 331 1.36e-47 164
MS.gene037465.t1 MTR_3g437360 49.367 79 40 0 3 81 4 82 8.63e-19 86.3
MS.gene037465.t1 MTR_2g006890 44.624 186 102 1 154 338 190 375 2.96e-46 161
MS.gene037465.t1 MTR_3g088140 43.407 182 102 1 161 341 175 356 3.28e-45 158
MS.gene037465.t1 MTR_8g006430 29.208 404 160 12 5 338 15 362 3.10e-36 135
MS.gene037465.t1 MTR_3g437850 36.816 201 85 4 3 195 1 167 5.11e-36 128
MS.gene037465.t1 MTR_3g087030 28.689 366 209 13 3 337 81 425 1.23e-31 123
MS.gene037465.t1 MTR_5g065160 29.480 346 216 12 4 332 83 417 1.01e-26 110
MS.gene037465.t1 MTR_5g065160 29.480 346 216 12 4 332 82 416 1.05e-26 110
MS.gene037465.t1 MTR_5g065160 29.480 346 216 12 4 332 83 417 1.64e-26 109
MS.gene037465.t1 MTR_5g065160 29.480 346 216 12 4 332 76 410 1.69e-26 109
MS.gene037465.t1 MTR_2g087660 36.232 138 86 1 203 338 221 358 1.66e-24 103
MS.gene037465.t1 MTR_2g087660 56.338 71 26 1 5 75 14 79 3.15e-12 67.4
MS.gene037465.t1 MTR_4g050420 35.507 138 87 1 203 338 219 356 1.36e-23 100
MS.gene037465.t1 MTR_4g050420 52.113 71 29 1 5 75 14 79 9.64e-11 62.8
MS.gene037465.t1 MTR_3g027580 30.028 353 211 11 4 337 89 424 2.83e-23 100
MS.gene037465.t1 MTR_4g023470 26.149 348 220 11 5 331 87 418 7.68e-20 90.5
MS.gene037465.t1 MTR_7g101070 55.385 65 29 0 4 68 358 422 3.82e-19 88.6
MS.gene037465.t1 MTR_2g104030 41.803 122 51 4 4 125 70 171 8.22e-19 87.4
MS.gene037465.t1 MTR_7g112360 54.545 66 27 1 5 67 17 82 6.19e-17 77.4
MS.gene037465.t1 MTR_6g471050 25.501 349 199 11 30 339 7 333 7.74e-17 81.6
MS.gene037465.t1 MTR_7g112360 54.545 66 27 1 5 67 17 82 8.62e-17 75.9
MS.gene037465.t1 MTR_5g012530 47.297 74 37 1 4 75 12 85 1.31e-15 78.2
MS.gene037465.t1 MTR_1g110310 49.296 71 35 1 4 74 16 85 2.97e-15 76.6
MS.gene037465.t1 MTR_5g065860 51.562 64 30 1 4 67 48 110 4.85e-15 72.0
MS.gene037465.t1 MTR_7g069480 50.000 70 33 1 3 72 26 93 7.71e-15 75.9
MS.gene037465.t1 MTR_8g022310 46.377 69 32 1 4 67 10 78 1.79e-14 72.0
MS.gene037465.t1 MTR_5g035770 49.315 73 36 1 4 76 25 96 3.00e-14 73.6
MS.gene037465.t1 MTR_8g022310 46.377 69 32 1 4 67 10 78 3.03e-14 70.9
MS.gene037465.t1 MTR_8g022310 46.377 69 32 1 4 67 10 78 3.67e-14 71.6
MS.gene037465.t1 MTR_8g022310 46.377 69 32 1 4 67 10 78 3.87e-14 70.9
MS.gene037465.t1 MTR_2g087660 37.209 86 54 0 201 286 219 304 7.49e-14 71.6
MS.gene037465.t1 MTR_2g087660 56.338 71 26 1 5 75 14 79 1.91e-12 67.8
MS.gene037465.t1 MTR_4g085070 54.717 53 21 1 18 67 26 78 1.10e-13 68.2
MS.gene037465.t1 MTR_6g027110 41.333 75 40 1 3 73 1 75 1.20e-13 67.8
MS.gene037465.t1 MTR_3g100330 52.239 67 29 2 3 68 68 132 2.06e-13 69.3
MS.gene037465.t1 MTR_1g029460 40.000 95 47 3 3 88 5 98 3.21e-13 70.5
MS.gene037465.t1 MTR_6g027030 42.667 75 39 1 3 73 1 75 3.87e-13 68.2
MS.gene037465.t1 MTR_1g087580 41.964 112 58 4 234 340 76 185 7.71e-13 67.0
MS.gene037465.t1 MTR_6g026940 43.478 69 35 1 3 67 1 69 1.03e-12 66.2
MS.gene037465.t1 MTR_1g052110 46.154 65 34 1 6 70 40 103 3.22e-12 66.6
MS.gene037465.t1 MTR_7g092380 31.707 123 77 3 6 122 24 145 7.39e-12 65.5
MS.gene037465.t1 MTR_5g004570 45.070 71 38 1 4 74 6 75 1.79e-11 63.9
MS.gene037465.t1 MTR_2g020420 53.846 65 28 1 3 67 68 130 8.31e-11 63.9
MS.gene037465.t1 MTR_2g020420 53.846 65 28 1 3 67 68 130 8.42e-11 63.5
MS.gene037465.t1 MTR_8g037810 42.697 89 48 2 5 91 7 94 9.65e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037465.t1 AT3G08910 77.843 343 54 5 1 341 1 323 0.0 519
MS.gene037465.t1 AT5G01390 75.294 340 77 4 1 339 1 334 2.69e-180 502
MS.gene037465.t1 AT2G20560 71.594 345 82 4 1 338 1 336 3.42e-174 487
MS.gene037465.t1 AT4G28480 67.705 353 93 4 1 338 1 347 3.44e-163 459
MS.gene037465.t1 AT4G28480 61.808 343 72 5 1 338 1 289 7.50e-137 390
MS.gene037465.t1 AT5G25530 58.166 349 125 6 1 339 1 338 4.09e-136 390
MS.gene037465.t1 AT5G25530 56.863 357 125 7 1 339 1 346 3.00e-133 384
MS.gene037465.t1 AT5G01390 60.933 343 63 5 1 339 1 276 2.75e-132 378
MS.gene037465.t1 AT1G10350 55.429 350 146 3 1 341 1 349 3.30e-128 371
MS.gene037465.t1 AT3G47940 52.162 370 121 5 1 338 1 346 2.80e-125 363
MS.gene037465.t1 AT1G59725 54.131 351 131 4 1 341 1 331 2.02e-123 358
MS.gene037465.t1 AT5G01390 53.392 339 56 5 1 339 1 237 6.52e-106 310
MS.gene037465.t1 AT2G20550 55.634 284 78 6 100 338 3 283 2.17e-96 287
MS.gene037465.t1 AT2G20550 55.634 284 78 6 100 338 3 283 2.17e-96 287
MS.gene037465.t1 AT5G01390 70.918 196 50 4 1 195 1 190 2.02e-84 255
MS.gene037465.t1 AT1G44160 43.644 236 120 3 111 341 129 356 4.90e-53 179
MS.gene037465.t1 AT3G62600 37.037 351 180 11 2 339 24 346 1.37e-51 174
MS.gene037465.t1 AT1G11040 39.604 202 107 1 146 332 225 426 1.92e-44 158
MS.gene037465.t1 AT5G22060 30.653 398 159 10 5 338 15 359 1.84e-36 136
MS.gene037465.t1 AT2G22360 29.091 385 182 13 3 337 85 428 2.07e-35 134
MS.gene037465.t1 AT5G48030 28.532 361 203 14 4 331 94 432 5.80e-26 108
MS.gene037465.t1 AT3G44110 35.507 138 87 1 203 338 221 358 3.53e-23 99.8
MS.gene037465.t1 AT1G80030 43.307 127 46 5 4 130 75 175 8.11e-21 93.6
MS.gene037465.t1 AT1G80030 43.307 127 46 5 4 130 75 175 1.10e-20 93.2
MS.gene037465.t1 AT1G80030 43.307 127 46 5 4 130 75 175 1.10e-20 93.2
MS.gene037465.t1 AT1G80030 43.307 127 46 5 4 130 75 175 1.10e-20 93.2
MS.gene037465.t1 AT3G17830 56.000 75 31 1 2 76 61 133 2.03e-19 89.4
MS.gene037465.t1 AT4G39960 50.588 85 36 2 4 88 85 163 8.73e-19 87.4
MS.gene037465.t1 AT4G39960 32.353 136 88 3 204 337 301 434 2.19e-14 74.3
MS.gene037465.t1 AT4G39960 50.588 85 36 2 4 88 85 163 8.73e-19 87.4
MS.gene037465.t1 AT4G39960 32.353 136 88 3 204 337 301 434 2.19e-14 74.3
MS.gene037465.t1 AT3G44110 36.111 108 67 1 203 308 221 328 1.07e-16 80.5
MS.gene037465.t1 AT5G03160 52.308 65 31 0 4 68 370 434 2.38e-16 80.1
MS.gene037465.t1 AT1G68370 52.113 71 33 1 4 74 17 86 5.54e-16 79.0
MS.gene037465.t1 AT1G56300 51.515 66 29 1 5 67 14 79 9.70e-16 73.2
MS.gene037465.t1 AT1G56300 51.515 66 29 1 5 67 14 79 1.13e-15 73.9
MS.gene037465.t1 AT5G16650 51.562 64 30 1 4 67 11 73 2.00e-15 73.6
MS.gene037465.t1 AT5G16650 51.562 64 30 1 4 67 11 73 2.82e-15 72.0
MS.gene037465.t1 AT1G59980 47.826 69 35 1 6 74 25 92 8.22e-15 75.1
MS.gene037465.t1 AT1G59980 47.826 69 35 1 6 74 25 92 1.62e-14 74.3
MS.gene037465.t1 AT2G41000 46.377 69 33 1 3 67 2 70 2.94e-14 71.2
MS.gene037465.t1 AT3G08970 49.333 75 34 2 3 77 26 96 4.13e-14 73.6
MS.gene037465.t1 AT3G08970 49.333 75 34 2 3 77 26 96 4.13e-14 73.6
MS.gene037465.t1 AT2G35720 45.205 73 38 1 4 74 15 87 5.11e-14 73.2
MS.gene037465.t1 AT2G41000 46.377 69 33 1 3 67 2 70 6.69e-14 69.7
MS.gene037465.t1 AT2G21510 46.914 81 41 2 4 83 6 85 9.63e-14 71.6
MS.gene037465.t1 AT2G21510 46.914 81 41 2 4 83 6 85 9.63e-14 71.6
MS.gene037465.t1 AT2G21510 46.914 81 41 2 4 83 6 85 9.77e-14 71.6
MS.gene037465.t1 AT2G21510 46.914 81 41 2 4 83 6 85 9.77e-14 71.6
MS.gene037465.t1 AT2G21510 46.914 81 41 2 4 83 6 85 1.31e-13 71.2
MS.gene037465.t1 AT1G24120 44.595 74 40 1 4 77 20 92 1.99e-13 71.2
MS.gene037465.t1 AT2G33735 46.154 65 34 1 4 68 22 85 2.71e-13 66.2
MS.gene037465.t1 AT2G33735 46.154 65 34 1 4 68 22 85 2.71e-13 66.2
MS.gene037465.t1 AT5G06910 49.231 65 32 1 6 70 31 94 8.32e-13 68.2
MS.gene037465.t1 AT1G71000 43.939 66 34 1 5 67 9 74 7.69e-12 63.5
MS.gene037465.t1 AT4G39150 43.210 81 44 2 4 83 6 85 1.12e-11 65.5
MS.gene037465.t1 AT4G39150 43.210 81 44 2 4 83 6 85 1.12e-11 65.5
MS.gene037465.t1 AT4G39150 43.210 81 44 2 4 83 6 85 1.12e-11 65.5
MS.gene037465.t1 AT1G71000 43.939 66 34 1 5 67 9 74 1.69e-11 62.4
MS.gene037465.t1 AT4G19570 51.515 66 30 1 3 68 65 128 2.75e-11 65.1
MS.gene037465.t1 AT3G12170 46.154 65 34 1 6 70 13 76 3.28e-11 63.5
MS.gene037465.t1 AT1G21080 41.250 80 46 1 4 83 6 84 3.63e-11 64.3
MS.gene037465.t1 AT1G21080 40.741 81 47 1 3 83 5 84 3.95e-11 63.9
MS.gene037465.t1 AT5G05750 37.273 110 61 3 4 113 114 215 4.63e-11 63.2
MS.gene037465.t1 AT3G12170 46.154 65 34 1 6 70 49 112 5.69e-11 63.2

Find 95 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGAGATTTGCTTGAATT+TGG 0.168588 4.4:-84681990 None:intergenic
TCAGCATCTTTCTTGTTATT+AGG 0.176740 4.4:-84681965 None:intergenic
CAGCATCTTTCTTGTTATTA+GGG 0.208495 4.4:-84681964 None:intergenic
TCCCATCGAGGGTAGCTATT+TGG 0.216321 4.4:-84685020 None:intergenic
TCCTAAGGAACCTTCCAAAA+AGG 0.245405 4.4:+84685119 MS.gene037465:CDS
GCTTTCCGAGGGGAATGTTT+AGG 0.274668 4.4:+84683242 MS.gene037465:CDS
CTTTCCGAGGGGAATGTTTA+GGG 0.283758 4.4:+84683243 MS.gene037465:CDS
CCCATCGAGGGTAGCTATTT+GGG 0.309339 4.4:-84685019 None:intergenic
TCATATGAAGAAGTAATTAA+AGG 0.309573 4.4:+84685081 MS.gene037465:CDS
TGCTCTGATGTAAGTCTTGA+TGG 0.316745 4.4:-84685174 None:intergenic
AGTTTGGAGGATTTGTATAA+AGG 0.321209 4.4:+84683358 MS.gene037465:CDS
TGGCGGTGGAATGGGTGATA+TGG 0.323498 4.4:+84683198 MS.gene037465:CDS
CTCTGTTCATTTCCCTTCTC+CGG 0.330584 4.4:-84684868 None:intergenic
AAACAAGGTCTGCAGGTATA+AGG 0.341570 4.4:-84684894 None:intergenic
TTGTTATTAGGGTTCTTATC+AGG 0.349663 4.4:-84681953 None:intergenic
GTTTGGAGGATTTGTATAAA+GGG 0.350475 4.4:+84683359 MS.gene037465:CDS
AGAATTTCCTCAACTGTAGT+AGG 0.358832 4.4:-84684796 None:intergenic
TTTCTCTTCCTTTAGGAATT+CGG 0.359374 4.4:+84683273 MS.gene037465:CDS
TTGGAAGGTTCCTTAGGAAT+TGG 0.363891 4.4:-84685114 None:intergenic
GGTGGTCATCCTGGTGCATC+TGG 0.369509 4.4:+84683220 MS.gene037465:CDS
GAGAACATTGCCTTGCAGTT+TGG 0.378422 4.4:+84683342 MS.gene037465:CDS
TTCGGGTTTCAAAGACCATT+TGG 0.392906 4.4:+84683178 MS.gene037465:CDS
TTAATTACTTCTTCATATGA+TGG 0.396614 4.4:-84685078 None:intergenic
AGACCATTTGGCGGTGGAAT+GGG 0.427291 4.4:+84683190 MS.gene037465:CDS
ATCGCAAACTTGCTATGAAA+TGG 0.429662 4.4:+84681927 MS.gene037465:CDS
GGTGATATGGGTGGTCATCC+TGG 0.434210 4.4:+84683211 MS.gene037465:CDS
GGCGGTGGAATGGGTGATAT+GGG 0.438794 4.4:+84683199 MS.gene037465:CDS
ATGGTGGACCGACAATGTTC+CGG 0.441258 4.4:+84683116 MS.gene037465:CDS
ATCAAGCCAGGTTGGAAGAA+AGG 0.451023 4.4:+84684829 MS.gene037465:CDS
AAGACCATTTGGCGGTGGAA+TGG 0.454672 4.4:+84683189 MS.gene037465:CDS
ATATGGTGAGGAGGGGTTGA+AGG 0.458111 4.4:+84683048 MS.gene037465:CDS
TCGGAAAATCCACCTGCACC+TGG 0.462806 4.4:-84683085 None:intergenic
TTTGTTCCTTTCTTCCAACC+TGG 0.471768 4.4:-84684835 None:intergenic
AATATGTCATCCGCACTTCT+CGG 0.475047 4.4:-84683145 None:intergenic
CCGCACTTCTCGGATTGAAC+CGG 0.478831 4.4:-84683135 None:intergenic
CTAACAATTGAGATCAAGCC+AGG 0.485097 4.4:+84684817 MS.gene037465:CDS
AACATTGCCTTGCAGTTTGG+AGG 0.487226 4.4:+84683345 MS.gene037465:CDS
GGATTGAACCGGAACATTGT+CGG 0.505215 4.4:-84683124 None:intergenic
AGAGCTGTGTATGATCAATA+TGG 0.509203 4.4:+84683031 MS.gene037465:CDS
CAAGGCAATGTTCTCTCTAT+CGG 0.510097 4.4:-84683334 None:intergenic
GCTGGAATCAGTAACATCTC+TGG 0.511627 4.4:-84683404 None:intergenic
CCTCGATGGGAGGAATCTTA+CGG 0.515468 4.4:+84685032 MS.gene037465:CDS
CCCAAATAGCTACCCTCGAT+GGG 0.515770 4.4:+84685019 MS.gene037465:CDS
GGACTAATGATGGTGTTGAC+GGG 0.516562 4.4:-84685057 None:intergenic
TCCCTCTTGAAGACAGTATG+AGG 0.516733 4.4:-84684934 None:intergenic
TGGTGCATCTGGCTTTCCGA+GGG 0.518716 4.4:+84683231 MS.gene037465:CDS
CGGAAAATCCACCTGCACCT+GGG 0.520170 4.4:-84683084 None:intergenic
TTTAGGAATTCGGCCGGTGA+AGG 0.528483 4.4:+84683283 MS.gene037465:CDS
CTGGTGCATCTGGCTTTCCG+AGG 0.535834 4.4:+84683230 MS.gene037465:CDS
GCCCAAATAGCTACCCTCGA+TGG 0.538402 4.4:+84685018 MS.gene037465:CDS
TTCATATGATGGACTAATGA+TGG 0.538880 4.4:-84685067 None:intergenic
TTGCATTTCGATCTATCTGA+AGG 0.539158 4.4:-84681880 None:intergenic
CTCGGAAAGCCAGATGCACC+AGG 0.544371 4.4:-84683229 None:intergenic
CAATTGAGATCAAGCCAGGT+TGG 0.546154 4.4:+84684821 MS.gene037465:CDS
TCACCCATTCCACCGCCAAA+TGG 0.551823 4.4:-84683193 None:intergenic
GGGTTTCAAAGACCATTTGG+CGG 0.553824 4.4:+84683181 MS.gene037465:CDS
TGAAGAAGTAATTAAAGGAG+AGG 0.557340 4.4:+84685086 MS.gene037465:CDS
AGAGGGTATGCCAATTCCTA+AGG 0.558236 4.4:+84685104 MS.gene037465:CDS
TGTCAATAATCGCTTGATGC+CGG 0.560172 4.4:-84685202 None:intergenic
AATTCCTAAAGGAAGAGAAA+AGG 0.566815 4.4:-84683270 None:intergenic
GGAAAATCCACCTGCACCTG+GGG 0.568173 4.4:-84683083 None:intergenic
TTTCAAAGACCATTTGGCGG+TGG 0.571030 4.4:+84683184 MS.gene037465:CDS
TTCACCGGCCGAATTCCTAA+AGG 0.573122 4.4:-84683281 None:intergenic
TATGGTGAGGAGGGGTTGAA+GGG 0.576990 4.4:+84683049 MS.gene037465:CDS
GAAGAAGTAATTAAAGGAGA+GGG 0.582830 4.4:+84685087 MS.gene037465:CDS
CACATTGGCAGATCCTTCAC+CGG 0.582928 4.4:-84683296 None:intergenic
TCTCTTGTAGAAGCTCTGAC+AGG 0.585328 4.4:+84684988 MS.gene037465:CDS
TGGACTAATGATGGTGTTGA+CGG 0.590380 4.4:-84685058 None:intergenic
TATGATCAATATGGTGAGGA+GGG 0.591969 4.4:+84683040 MS.gene037465:CDS
TACAAATCCTCCAAACTGCA+AGG 0.594020 4.4:-84683352 None:intergenic
CTTACATCAGAGCAGAAGAC+CGG 0.597536 4.4:+84685183 MS.gene037465:CDS
CGTAAGATTCCTCCCATCGA+GGG 0.600569 4.4:-84685031 None:intergenic
TCTTCCTTTAGGAATTCGGC+CGG 0.603452 4.4:+84683277 MS.gene037465:CDS
ATGGTGAGGAGGGGTTGAAG+GGG 0.612762 4.4:+84683050 MS.gene037465:CDS
GGTGGAATGGGTGATATGGG+TGG 0.613503 4.4:+84683202 MS.gene037465:CDS
AAGGAAGCCTACTACAGTTG+AGG 0.616465 4.4:+84684789 MS.gene037465:intron
CATACTGTCTTCAAGAGGGA+CGG 0.632225 4.4:+84684937 MS.gene037465:CDS
GCCTCATACTGTCTTCAAGA+GGG 0.644262 4.4:+84684933 MS.gene037465:CDS
AGAGATGTTACTGATTCCAG+CGG 0.648475 4.4:+84683406 MS.gene037465:CDS
TCTTTGAAACCCGAAGAACT+CGG 0.650196 4.4:-84683170 None:intergenic
GAGATGTTACTGATTCCAGC+GGG 0.654951 4.4:+84683407 MS.gene037465:CDS
TCATCCCTAAACATTCCCCT+CGG 0.655585 4.4:-84683247 None:intergenic
AGCCTCATACTGTCTTCAAG+AGG 0.661585 4.4:+84684932 MS.gene037465:CDS
CGGTCCACCATCACCACCGT+CGG 0.662709 4.4:-84683104 None:intergenic
GGTGCATCTGGCTTTCCGAG+GGG 0.666004 4.4:+84683232 MS.gene037465:CDS
AAATAGCTACCCTCGATGGG+AGG 0.668540 4.4:+84685022 MS.gene037465:CDS
CCGGTTCAATCCGAGAAGTG+CGG 0.669023 4.4:+84683135 MS.gene037465:CDS
AAGGATCTGCCAATGTGATG+AGG 0.672645 4.4:+84683302 MS.gene037465:CDS
CCGTAAGATTCCTCCCATCG+AGG 0.673715 4.4:-84685032 None:intergenic
GTATGATCAATATGGTGAGG+AGG 0.684615 4.4:+84683039 MS.gene037465:CDS
GACTAATGATGGTGTTGACG+GGG 0.692431 4.4:-84685056 None:intergenic
GAAAATCCACCTGCACCTGG+GGG 0.693417 4.4:-84683082 None:intergenic
TGTGTATGATCAATATGGTG+AGG 0.703352 4.4:+84683036 MS.gene037465:CDS
GAGAAGGGAAATGAACAGAG+AGG 0.703900 4.4:+84684871 MS.gene037465:CDS
ATGATCAATATGGTGAGGAG+GGG 0.712167 4.4:+84683041 MS.gene037465:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATTTTGATAATTTTAATT+GGG + chr4.4:84682053-84682072 MS.gene037465:intron 10.0%
!!! TCAATTTTGATAATTTTAAT+TGG + chr4.4:84682052-84682071 MS.gene037465:intron 10.0%
!! AAAGAATAATTTCATGAAAT+GGG - chr4.4:84684270-84684289 None:intergenic 15.0%
!! ATAAACAGCTTAATTATATT+AGG + chr4.4:84683629-84683648 MS.gene037465:intron 15.0%
!!! TGTGTTTAATTTTATGATTT+TGG + chr4.4:84682596-84682615 MS.gene037465:intron 15.0%
!!! TTGTAAAGTTTTGATTTTTT+GGG + chr4.4:84682089-84682108 MS.gene037465:intron 15.0%
!!! TTTGTAAAGTTTTGATTTTT+TGG + chr4.4:84682088-84682107 MS.gene037465:intron 15.0%
!!! TTTTATGATTTTGGATAATT+TGG + chr4.4:84682605-84682624 MS.gene037465:intron 15.0%
!! AAATAATCAAATTTCCGTTA+AGG + chr4.4:84683597-84683616 MS.gene037465:intron 20.0%
!! GAAAGAATAATTTCATGAAA+TGG - chr4.4:84684271-84684290 None:intergenic 20.0%
!! TCATATGAAGAAGTAATTAA+AGG + chr4.4:84685081-84685100 MS.gene037465:CDS 20.0%
!! TGATACTTATAGTTCTTAAA+TGG + chr4.4:84683935-84683954 MS.gene037465:intron 20.0%
!! TTAATTACTTCTTCATATGA+TGG - chr4.4:84685081-84685100 None:intergenic 20.0%
!!! ATTGTTGATTTTGGATAATT+TGG + chr4.4:84682162-84682181 MS.gene037465:intron 20.0%
!!! ATTTTATGAGTAAATGACTT+TGG - chr4.4:84684446-84684465 None:intergenic 20.0%
!!! TGTAAAGTTTTGATTTTTTG+GGG + chr4.4:84682090-84682109 MS.gene037465:intron 20.0%
!!! TGTGTTTTTATTGTTGATTT+TGG + chr4.4:84682153-84682172 MS.gene037465:intron 20.0%
!!! TTGGATAATTTGGAAATTTT+GGG + chr4.4:84682172-84682191 MS.gene037465:intron 20.0%
!!! TTGTTATTTTCTTGTGATTT+AGG + chr4.4:84682801-84682820 MS.gene037465:intron 20.0%
!!! TTTGGATAATTTGGAAATTT+TGG + chr4.4:84682171-84682190 MS.gene037465:intron 20.0%
!!! TTTTTGTTTTGATTGTGATT+AGG + chr4.4:84682842-84682861 MS.gene037465:intron 20.0%
! AATAAGCTAAAAACAGCTTA+TGG + chr4.4:84683749-84683768 MS.gene037465:intron 25.0%
! ATAAACATGATGAAGAATGT+TGG - chr4.4:84684048-84684067 None:intergenic 25.0%
! GAATGAAATAGCATATAGAA+AGG - chr4.4:84683973-84683992 None:intergenic 25.0%
! TGCAATAAGACATGTTTAAA+TGG + chr4.4:84684160-84684179 MS.gene037465:intron 25.0%
! TTAGGATTACTTGGAAATTT+CGG + chr4.4:84682687-84682706 MS.gene037465:intron 25.0%
!! CAAAATAATTCTTCTTTTGC+TGG + chr4.4:84683992-84684011 MS.gene037465:intron 25.0%
!! TCTTGTGATTTAGAATCATT+TGG + chr4.4:84682949-84682968 MS.gene037465:intron 25.0%
!! TGGATAATTTGGAAATTTTG+GGG + chr4.4:84682173-84682192 MS.gene037465:intron 25.0%
!! TGTATGTTTTCTTATTCTGA+AGG + chr4.4:84684770-84684789 MS.gene037465:intron 25.0%
!! TTAGAATCATTTGGAATTGT+TGG + chr4.4:84682958-84682977 MS.gene037465:intron 25.0%
!! TTGTGTTTTTCTTGTGATTT+AGG + chr4.4:84682457-84682476 MS.gene037465:intron 25.0%
!! TTGTGTTTTTCTTGTGATTT+TGG + chr4.4:84682457-84682476 MS.gene037465:intron 25.0%
!! TTTGGATAATTTGGAATTGT+GGG + chr4.4:84682614-84682633 MS.gene037465:intron 25.0%
!! TTTTGTGATTTTGGATCATT+TGG + chr4.4:84682534-84682553 MS.gene037465:intron 25.0%
!!! AGGTTTACAATTTTAGCTTA+TGG + chr4.4:84682502-84682521 MS.gene037465:intron 25.0%
!!! ATTTGGAATTGTGAAGTTTT+AGG + chr4.4:84682402-84682421 MS.gene037465:intron 25.0%
!!! GATCATTTGTTTGATTTTTG+GGG + chr4.4:84682249-84682268 MS.gene037465:intron 25.0%
!!! GGATCATTTGTTTGATTTTT+GGG + chr4.4:84682248-84682267 MS.gene037465:intron 25.0%
!!! GGTGTTTAATTTTGTGTTTT+TGG + chr4.4:84682215-84682234 MS.gene037465:intron 25.0%
!!! GGTTTACAATTTTAGCTTAT+GGG + chr4.4:84682503-84682522 MS.gene037465:intron 25.0%
!!! GTTGTTTTCATAAGCTATAT+TGG + chr4.4:84683714-84683733 MS.gene037465:intron 25.0%
!!! GTTTACAATTTTAGCTTATG+GGG + chr4.4:84682504-84682523 MS.gene037465:intron 25.0%
!!! GTTTTTTTCGTTGTTGATTT+TGG + chr4.4:84682310-84682329 MS.gene037465:intron 25.0%
!!! TAGAAAGTGTTGTCATATAA+CGG - chr4.4:84684606-84684625 None:intergenic 25.0%
!!! TCTGGAAATCTTCATTTTTT+TGG - chr4.4:84683389-84683408 None:intergenic 25.0%
!!! TGAGATGTTTTTGAAATGTT+GGG + chr4.4:84682908-84682927 MS.gene037465:intron 25.0%
!!! TGGATCATTTGTTTGATTTT+TGG + chr4.4:84682247-84682266 MS.gene037465:intron 25.0%
!!! TGTATTTTGTTATGTGTTGT+TGG + chr4.4:84683529-84683548 MS.gene037465:intron 25.0%
!!! TGTGTTTTTCTTGTTGATTT+TGG + chr4.4:84682227-84682246 MS.gene037465:intron 25.0%
!!! TTTGATTTTTTGGGGTTTTT+GGG + chr4.4:84682098-84682117 MS.gene037465:intron 25.0%
!!! TTTGGAATTGTGAAGTTTTA+GGG + chr4.4:84682403-84682422 MS.gene037465:intron 25.0%
!!! TTTTGATTTTTTGGGGTTTT+TGG + chr4.4:84682097-84682116 MS.gene037465:intron 25.0%
!!! TTTTGGATAATTTGGAATTG+TGG + chr4.4:84682613-84682632 MS.gene037465:intron 25.0%
AATTCCTAAAGGAAGAGAAA+AGG - chr4.4:84683273-84683292 None:intergenic 30.0%
AGTTTGGAGGATTTGTATAA+AGG + chr4.4:84683358-84683377 MS.gene037465:CDS 30.0%
ATAATAAAAACAAGGTCTGC+AGG - chr4.4:84684904-84684923 None:intergenic 30.0%
CAATGCAACTAGGTTAATAT+AGG - chr4.4:84683458-84683477 None:intergenic 30.0%
CTATATTAACCTAGTTGCAT+TGG + chr4.4:84683456-84683475 MS.gene037465:intron 30.0%
GAAGAAGTAATTAAAGGAGA+GGG + chr4.4:84685087-84685106 MS.gene037465:CDS 30.0%
GTGATGTGATGTAACTATTA+AGG + chr4.4:84684113-84684132 MS.gene037465:intron 30.0%
GTTTGGAGGATTTGTATAAA+GGG + chr4.4:84683359-84683378 MS.gene037465:CDS 30.0%
TAGGATTACTTGGAAATTTC+GGG + chr4.4:84682688-84682707 MS.gene037465:intron 30.0%
TATTAGAGCTGTGAATTGAA+TGG + chr4.4:84684731-84684750 MS.gene037465:intron 30.0%
TCAAATAAGCCAATCTAAAC+AGG + chr4.4:84683840-84683859 MS.gene037465:intron 30.0%
TCTCGTCGATAATAAAAACA+AGG - chr4.4:84684912-84684931 None:intergenic 30.0%
TGAAGAAGTAATTAAAGGAG+AGG + chr4.4:84685086-84685105 MS.gene037465:CDS 30.0%
TTATTATGGCCTGTTTAGAT+TGG - chr4.4:84683852-84683871 None:intergenic 30.0%
TTGTCTAAAAAACTTGAGTC+TGG - chr4.4:84684214-84684233 None:intergenic 30.0%
! AGGAACAAAGATAACTTTTC+CGG + chr4.4:84684849-84684868 MS.gene037465:CDS 30.0%
! AGGGTTACAATTTGGAATTA+AGG + chr4.4:84682571-84682590 MS.gene037465:intron 30.0%
! AGTGATTTCGATTTGTGAAT+AGG + chr4.4:84682988-84683007 MS.gene037465:intron 30.0%
! ATTTGGAATTGTGAAGTTTC+AGG + chr4.4:84682551-84682570 MS.gene037465:intron 30.0%
! GGATAATTTGGAAATTTTGG+GGG + chr4.4:84682174-84682193 MS.gene037465:intron 30.0%
! GGGTTACAATTTGAAATGTT+GGG + chr4.4:84682769-84682788 MS.gene037465:intron 30.0%
! GGTTACAATTTGAAATGTTG+GGG + chr4.4:84682770-84682789 MS.gene037465:intron 30.0%
! GGTTACAATTTGGAATTATG+AGG + chr4.4:84682710-84682729 MS.gene037465:intron 30.0%
! GTTACAATTTGAAATGTTGG+GGG + chr4.4:84682771-84682790 MS.gene037465:intron 30.0%
! GTTGCATAATTTGGAATGTT+GGG + chr4.4:84682271-84682290 MS.gene037465:intron 30.0%
! TCTTGTGATTTAGGATCATT+TGG + chr4.4:84682810-84682829 MS.gene037465:intron 30.0%
! TCTTGTGATTTAGGATTACT+TGG + chr4.4:84682678-84682697 MS.gene037465:intron 30.0%
! TGGGTTACAATTTGAAATGT+TGG + chr4.4:84682768-84682787 MS.gene037465:intron 30.0%
! TTCAGAGATTTGCTTGAATT+TGG - chr4.4:84681993-84682012 None:intergenic 30.0%
! TTCTTGTGATTTTGGACATT+TGG + chr4.4:84682465-84682484 MS.gene037465:intron 30.0%
! TTGCATAATTTGGAATGTTG+GGG + chr4.4:84682272-84682291 MS.gene037465:intron 30.0%
! TTGGATCATTTGGACATTTT+GGG + chr4.4:84682329-84682348 MS.gene037465:intron 30.0%
! TTGTTATTAGGGTTCTTATC+AGG - chr4.4:84681956-84681975 None:intergenic 30.0%
! TTTCTCTTCCTTTAGGAATT+CGG + chr4.4:84683273-84683292 MS.gene037465:CDS 30.0%
! TTTGGAATTGTGAAGTTTCA+GGG + chr4.4:84682552-84682571 MS.gene037465:intron 30.0%
! TTTGGATCAGTTGGATTTTT+GGG + chr4.4:84682749-84682768 MS.gene037465:intron 30.0%
! TTTGGATCATTTGGACATTT+TGG + chr4.4:84682328-84682347 MS.gene037465:intron 30.0%
! TTTTGGATCAGTTGGATTTT+TGG + chr4.4:84682748-84682767 MS.gene037465:intron 30.0%
!! CAAAATCTGCCACTTTATTA+TGG - chr4.4:84683866-84683885 None:intergenic 30.0%
!! CAGCATCTTTCTTGTTATTA+GGG - chr4.4:84681967-84681986 None:intergenic 30.0%
!! GGTGTTTGATTTTGTGATTT+TGG + chr4.4:84682525-84682544 MS.gene037465:intron 30.0%
!! GTGTTTGATTTTGGATCATT+TGG + chr4.4:84682385-84682404 MS.gene037465:intron 30.0%
!! TCAGCATCTTTCTTGTTATT+AGG - chr4.4:84681968-84681987 None:intergenic 30.0%
!! TTCATATGATGGACTAATGA+TGG - chr4.4:84685070-84685089 None:intergenic 30.0%
!!! ATTTGGAGTTTTGAGGTTTT+AGG + chr4.4:84682482-84682501 MS.gene037465:intron 30.0%
!!! ATTTTTGGGGTTGCATAATT+TGG + chr4.4:84682262-84682281 MS.gene037465:intron 30.0%
!!! GAAGTTTTAGGGTTACAATT+TGG + chr4.4:84682414-84682433 MS.gene037465:intron 30.0%
!!! GAGATGTTTTTGAAATGTTG+GGG + chr4.4:84682909-84682928 MS.gene037465:intron 30.0%
!!! GGAAATCTTCATTTTTTTGG+TGG - chr4.4:84683386-84683405 None:intergenic 30.0%
!!! GTGAGATGTTTTTGAAATGT+TGG + chr4.4:84682907-84682926 MS.gene037465:intron 30.0%
!!! GTTGTTGATTTTGGATCATT+TGG + chr4.4:84682319-84682338 MS.gene037465:intron 30.0%
!!! TTGATTTTTTGGGGTTTTTG+GGG + chr4.4:84682099-84682118 MS.gene037465:intron 30.0%
!!! TTTTGTGTTTTTGGATCAGT+TGG + chr4.4:84682740-84682759 MS.gene037465:intron 30.0%
AACCAATCCAAATTGTAACC+CGG - chr4.4:84682645-84682664 None:intergenic 35.0%
AGAATTTCCTCAACTGTAGT+AGG - chr4.4:84684799-84684818 None:intergenic 35.0%
AGAGCTGTGTATGATCAATA+TGG + chr4.4:84683031-84683050 MS.gene037465:CDS 35.0%
AGGATTACTTGGAAATTTCG+GGG + chr4.4:84682689-84682708 MS.gene037465:intron 35.0%
ATTAAGCTGTTTATCCGAAC+AGG - chr4.4:84683623-84683642 None:intergenic 35.0%
CCAATAAAACCAATGCAACT+AGG - chr4.4:84683468-84683487 None:intergenic 35.0%
CTAAACAGGCCATAATAAAG+TGG + chr4.4:84683854-84683873 MS.gene037465:intron 35.0%
GAAATTTCGGGGTTACAATT+TGG + chr4.4:84682700-84682719 MS.gene037465:intron 35.0%
GAAGTTTCAGGGTTACAATT+TGG + chr4.4:84682563-84682582 MS.gene037465:intron 35.0%
GATGTATTCAAAAGCTGTGT+TGG + chr4.4:84684531-84684550 MS.gene037465:intron 35.0%
GGGGTACAATTTGAATTGAT+GGG + chr4.4:84682193-84682212 MS.gene037465:intron 35.0%
GGGTACAATTTGAATTGATG+GGG + chr4.4:84682194-84682213 MS.gene037465:intron 35.0%
TAAAGACTTGTGAGTCTGTT+TGG - chr4.4:84683805-84683824 None:intergenic 35.0%
TATGATCAATATGGTGAGGA+GGG + chr4.4:84683040-84683059 MS.gene037465:CDS 35.0%
TGTGTATGATCAATATGGTG+AGG + chr4.4:84683036-84683055 MS.gene037465:CDS 35.0%
TTATGGAAACAGCTTATGAC+AGG - chr4.4:84683776-84683795 None:intergenic 35.0%
TTGCATTTCGATCTATCTGA+AGG - chr4.4:84681883-84681902 None:intergenic 35.0%
! AAAGATAACTTTTCCGGAGA+AGG + chr4.4:84684855-84684874 MS.gene037465:CDS 35.0%
! AAGATAACTTTTCCGGAGAA+GGG + chr4.4:84684856-84684875 MS.gene037465:CDS 35.0%
! ACATATTTTCCGAGTTCTTC+GGG + chr4.4:84683161-84683180 MS.gene037465:CDS 35.0%
! AGGGTTACAATTTGGAATGA+TGG + chr4.4:84682422-84682441 MS.gene037465:intron 35.0%
! ATGACCTTTTCTCTTCCTTT+AGG + chr4.4:84683266-84683285 MS.gene037465:CDS 35.0%
! GACATATTTTCCGAGTTCTT+CGG + chr4.4:84683160-84683179 MS.gene037465:CDS 35.0%
! GCTTCAGTTCTACTATTTTC+TGG - chr4.4:84684369-84684388 None:intergenic 35.0%
! GGGTTACAATTTGGAATGAT+GGG + chr4.4:84682423-84682442 MS.gene037465:intron 35.0%
! GGTTACAATTTGGAATGATG+GGG + chr4.4:84682424-84682443 MS.gene037465:intron 35.0%
! GGTTGCATAATTTGGAATGT+TGG + chr4.4:84682270-84682289 MS.gene037465:intron 35.0%
! TGCATAATTTGGAATGTTGG+GGG + chr4.4:84682273-84682292 MS.gene037465:intron 35.0%
! TGGATCATTTGGACATTTTG+GGG + chr4.4:84682330-84682349 MS.gene037465:intron 35.0%
!! ATCGCAAACTTGCTATGAAA+TGG + chr4.4:84681927-84681946 MS.gene037465:CDS 35.0%
!! TTTGGAATTGTGGGTTTTTC+CGG + chr4.4:84682623-84682642 MS.gene037465:intron 35.0%
!! TTTGGACATTTGGAGTTTTG+AGG + chr4.4:84682475-84682494 MS.gene037465:intron 35.0%
!!! CCTAGTTGCATTGGTTTTAT+TGG + chr4.4:84683465-84683484 MS.gene037465:intron 35.0%
!!! TGCAAGCAATTTTAGCTGAT+GGG + chr4.4:84682362-84682381 MS.gene037465:intron 35.0%
!!! TTGCAAGCAATTTTAGCTGA+TGG + chr4.4:84682361-84682380 MS.gene037465:intron 35.0%
!!! TTGGACATTTTGGGGTTTTT+GGG + chr4.4:84682338-84682357 MS.gene037465:intron 35.0%
!!! TTTGGACATTTTGGGGTTTT+TGG + chr4.4:84682337-84682356 MS.gene037465:intron 35.0%
AAACAAGGTCTGCAGGTATA+AGG - chr4.4:84684897-84684916 None:intergenic 40.0%
AATATGTCATCCGCACTTCT+CGG - chr4.4:84683148-84683167 None:intergenic 40.0%
AATTTCCGTTAAGGCCTGTT+CGG + chr4.4:84683606-84683625 MS.gene037465:intron 40.0%
AGTCTGTTTGGAAGAGCTTA+TGG - chr4.4:84683793-84683812 None:intergenic 40.0%
ATGATCAATATGGTGAGGAG+GGG + chr4.4:84683041-84683060 MS.gene037465:CDS 40.0%
CAAGGCAATGTTCTCTCTAT+CGG - chr4.4:84683337-84683356 None:intergenic 40.0%
CCTAAGGAACCTTCCAAAAA+GGG + chr4.4:84685120-84685139 MS.gene037465:CDS 40.0%
CCTTCAATTTCCTACAGCAT+CGG - chr4.4:84684308-84684327 None:intergenic 40.0%
CTAACAATTGAGATCAAGCC+AGG + chr4.4:84684817-84684836 MS.gene037465:CDS 40.0%
GTATGATCAATATGGTGAGG+AGG + chr4.4:84683039-84683058 MS.gene037465:CDS 40.0%
TAAAATTCCGCTGTGCTGTA+GGG + chr4.4:84684660-84684679 MS.gene037465:intron 40.0%
TACAAATCCTCCAAACTGCA+AGG - chr4.4:84683355-84683374 None:intergenic 40.0%
TCCTAAGGAACCTTCCAAAA+AGG + chr4.4:84685119-84685138 MS.gene037465:CDS 40.0%
TGATCATACACCTCTCTCTT+TGG - chr4.4:84682882-84682901 None:intergenic 40.0%
TGCTCTGATGTAAGTCTTGA+TGG - chr4.4:84685177-84685196 None:intergenic 40.0%
TGTCAATAATCGCTTGATGC+CGG - chr4.4:84685205-84685224 None:intergenic 40.0%
TTAAAATTCCGCTGTGCTGT+AGG + chr4.4:84684659-84684678 MS.gene037465:intron 40.0%
TTCCGGGTTACAATTTGGAT+TGG + chr4.4:84682640-84682659 MS.gene037465:intron 40.0%
TTGGAAGGTTCCTTAGGAAT+TGG - chr4.4:84685117-84685136 None:intergenic 40.0%
TTTATCCGAACAGGCCTTAA+CGG - chr4.4:84683614-84683633 None:intergenic 40.0%
TTTGTTCCTTTCTTCCAACC+TGG - chr4.4:84684838-84684857 None:intergenic 40.0%
! AGAGAGGTGTATGATCAGTA+TGG + chr4.4:84682885-84682904 MS.gene037465:intron 40.0%
! ATAATTTGGAATGTTGGGGG+TGG + chr4.4:84682276-84682295 MS.gene037465:intron 40.0%
! CTCAAGTTTCCCTTTTTGGA+AGG - chr4.4:84685132-84685151 None:intergenic 40.0%
! GACTCTCAAGTTTCCCTTTT+TGG - chr4.4:84685136-84685155 None:intergenic 40.0%
! GGGGGTACAATTTGAATTGA+TGG + chr4.4:84682192-84682211 MS.gene037465:intron 40.0%
! GGGGTTGTAATTTGCATGTT+GGG + chr4.4:84682118-84682137 MS.gene037465:intron 40.0%
! GGTTTTTCCGGGTTACAATT+TGG + chr4.4:84682635-84682654 MS.gene037465:intron 40.0%
! TAAAGTGGCAGATTTTGCGA+TGG + chr4.4:84683869-84683888 MS.gene037465:intron 40.0%
! TCATACACAGCTCTCTTTTG+TGG - chr4.4:84683025-84683044 None:intergenic 40.0%
! TGCACTTTTCCTCATCACAT+TGG - chr4.4:84683314-84683333 None:intergenic 40.0%
! TGGACTAATGATGGTGTTGA+CGG - chr4.4:84685061-84685080 None:intergenic 40.0%
! TGGGGTTGTAATTTGCATGT+TGG + chr4.4:84682117-84682136 MS.gene037465:intron 40.0%
! TTCGGGTTTCAAAGACCATT+TGG + chr4.4:84683178-84683197 MS.gene037465:CDS 40.0%
! TTGGAATTGTGGGTTTTTCC+GGG + chr4.4:84682624-84682643 MS.gene037465:intron 40.0%
!! AGAGATGTTACTGATTCCAG+CGG + chr4.4:84683406-84683425 MS.gene037465:CDS 40.0%
!! GTTCTACTATTTTCTGGCAC+AGG - chr4.4:84684363-84684382 None:intergenic 40.0%
!! TCTTTGAAACCCGAAGAACT+CGG - chr4.4:84683173-84683192 None:intergenic 40.0%
!!! GCAAGCAATTTTAGCTGATG+GGG + chr4.4:84682363-84682382 MS.gene037465:intron 40.0%
AAACTAGAAAACTCACCCGC+TGG - chr4.4:84683425-84683444 None:intergenic 45.0%
AACATTGCCTTGCAGTTTGG+AGG + chr4.4:84683345-84683364 MS.gene037465:CDS 45.0%
AAGGAAGCCTACTACAGTTG+AGG + chr4.4:84684789-84684808 MS.gene037465:intron 45.0%
AAGGATCTGCCAATGTGATG+AGG + chr4.4:84683302-84683321 MS.gene037465:CDS 45.0%
AGCCTCATACTGTCTTCAAG+AGG + chr4.4:84684932-84684951 MS.gene037465:CDS 45.0%
CAATTGAGATCAAGCCAGGT+TGG + chr4.4:84684821-84684840 MS.gene037465:CDS 45.0%
CATACTGTCTTCAAGAGGGA+CGG + chr4.4:84684937-84684956 MS.gene037465:CDS 45.0%
CCGATGCTGTAGGAAATTGA+AGG + chr4.4:84684305-84684324 MS.gene037465:intron 45.0%
CTCTGTTCATTTCCCTTCTC+CGG - chr4.4:84684871-84684890 None:intergenic 45.0%
CTTACATCAGAGCAGAAGAC+CGG + chr4.4:84685183-84685202 MS.gene037465:CDS 45.0%
CTTTCCGAGGGGAATGTTTA+GGG + chr4.4:84683243-84683262 MS.gene037465:CDS 45.0%
GAGAACATTGCCTTGCAGTT+TGG + chr4.4:84683342-84683361 MS.gene037465:CDS 45.0%
GAGAAGGGAAATGAACAGAG+AGG + chr4.4:84684871-84684890 MS.gene037465:CDS 45.0%
GAGTGATCAACCAAAGAGAG+AGG + chr4.4:84682869-84682888 MS.gene037465:intron 45.0%
GCCTCATACTGTCTTCAAGA+GGG + chr4.4:84684933-84684952 MS.gene037465:CDS 45.0%
GCTGGAATCAGTAACATCTC+TGG - chr4.4:84683407-84683426 None:intergenic 45.0%
GGATTGAACCGGAACATTGT+CGG - chr4.4:84683127-84683146 None:intergenic 45.0%
GGGTTTCAAAGACCATTTGG+CGG + chr4.4:84683181-84683200 MS.gene037465:CDS 45.0%
TCATCCCTAAACATTCCCCT+CGG - chr4.4:84683250-84683269 None:intergenic 45.0%
TCCCTCTTGAAGACAGTATG+AGG - chr4.4:84684937-84684956 None:intergenic 45.0%
TTTCAAAGACCATTTGGCGG+TGG + chr4.4:84683184-84683203 MS.gene037465:CDS 45.0%
! AGAGGGTATGCCAATTCCTA+AGG + chr4.4:84685104-84685123 MS.gene037465:CDS 45.0%
! ATCAAGCCAGGTTGGAAGAA+AGG + chr4.4:84684829-84684848 MS.gene037465:CDS 45.0%
! TCTCTTGTAGAAGCTCTGAC+AGG + chr4.4:84684988-84685007 MS.gene037465:CDS 45.0%
! TCTTCCTTTAGGAATTCGGC+CGG + chr4.4:84683277-84683296 MS.gene037465:CDS 45.0%
!! CCCTTTTTGGAAGGTTCCTT+AGG - chr4.4:84685123-84685142 None:intergenic 45.0%
!! GACTAATGATGGTGTTGACG+GGG - chr4.4:84685059-84685078 None:intergenic 45.0%
!! GAGATGTTACTGATTCCAGC+GGG + chr4.4:84683407-84683426 MS.gene037465:CDS 45.0%
!! GCTGATGGGGTGTTTGATTT+TGG + chr4.4:84682376-84682395 MS.gene037465:intron 45.0%
!! GGACTAATGATGGTGTTGAC+GGG - chr4.4:84685060-84685079 None:intergenic 45.0%
AAATAGCTACCCTCGATGGG+AGG + chr4.4:84685022-84685041 MS.gene037465:CDS 50.0%
AAGACCATTTGGCGGTGGAA+TGG + chr4.4:84683189-84683208 MS.gene037465:CDS 50.0%
AGACCATTTGGCGGTGGAAT+GGG + chr4.4:84683190-84683209 MS.gene037465:CDS 50.0%
ATATGGTGAGGAGGGGTTGA+AGG + chr4.4:84683048-84683067 MS.gene037465:CDS 50.0%
CACATTGGCAGATCCTTCAC+CGG - chr4.4:84683299-84683318 None:intergenic 50.0%
CATTGTCTAGCCGATGCTGT+AGG + chr4.4:84684295-84684314 MS.gene037465:intron 50.0%
CCCAAATAGCTACCCTCGAT+GGG + chr4.4:84685019-84685038 MS.gene037465:CDS 50.0%
CCCATCGAGGGTAGCTATTT+GGG - chr4.4:84685022-84685041 None:intergenic 50.0%
CCTCGATGGGAGGAATCTTA+CGG + chr4.4:84685032-84685051 MS.gene037465:CDS 50.0%
CGTAAGATTCCTCCCATCGA+GGG - chr4.4:84685034-84685053 None:intergenic 50.0%
GCTTTCCGAGGGGAATGTTT+AGG + chr4.4:84683242-84683261 MS.gene037465:CDS 50.0%
TATGGTGAGGAGGGGTTGAA+GGG + chr4.4:84683049-84683068 MS.gene037465:CDS 50.0%
TCCCATCGAGGGTAGCTATT+TGG - chr4.4:84685023-84685042 None:intergenic 50.0%
TTCACCGGCCGAATTCCTAA+AGG - chr4.4:84683284-84683303 None:intergenic 50.0%
TTTAGGAATTCGGCCGGTGA+AGG + chr4.4:84683283-84683302 MS.gene037465:CDS 50.0%
! TGAGTATCGCAGAACAGCAG+CGG + chr4.4:84684632-84684651 MS.gene037465:intron 50.0%
!! ATGGTGGACCGACAATGTTC+CGG + chr4.4:84683116-84683135 MS.gene037465:CDS 50.0%
ATAGCAGCCCTACAGCACAG+CGG - chr4.4:84684670-84684689 None:intergenic 55.0%
ATGGTGAGGAGGGGTTGAAG+GGG + chr4.4:84683050-84683069 MS.gene037465:CDS 55.0%
CCGCACTTCTCGGATTGAAC+CGG - chr4.4:84683138-84683157 None:intergenic 55.0%
CCGGTTCAATCCGAGAAGTG+CGG + chr4.4:84683135-84683154 MS.gene037465:CDS 55.0%
CCGTAAGATTCCTCCCATCG+AGG - chr4.4:84685035-84685054 None:intergenic 55.0%
CGGAAAATCCACCTGCACCT+GGG - chr4.4:84683087-84683106 None:intergenic 55.0%
GAAAATCCACCTGCACCTGG+GGG - chr4.4:84683085-84683104 None:intergenic 55.0%
GCCCAAATAGCTACCCTCGA+TGG + chr4.4:84685018-84685037 MS.gene037465:CDS 55.0%
GGAAAATCCACCTGCACCTG+GGG - chr4.4:84683086-84683105 None:intergenic 55.0%
GGCGGTGGAATGGGTGATAT+GGG + chr4.4:84683199-84683218 MS.gene037465:CDS 55.0%
GGTGATATGGGTGGTCATCC+TGG + chr4.4:84683211-84683230 MS.gene037465:CDS 55.0%
GGTGGAATGGGTGATATGGG+TGG + chr4.4:84683202-84683221 MS.gene037465:CDS 55.0%
TCACCCATTCCACCGCCAAA+TGG - chr4.4:84683196-84683215 None:intergenic 55.0%
TCGGAAAATCCACCTGCACC+TGG - chr4.4:84683088-84683107 None:intergenic 55.0%
TGGCGGTGGAATGGGTGATA+TGG + chr4.4:84683198-84683217 MS.gene037465:CDS 55.0%
! GGATTTTCCGACGGTGGTGA+TGG + chr4.4:84683097-84683116 MS.gene037465:CDS 55.0%
!! GGTGCAGGTGGATTTTCCGA+CGG + chr4.4:84683088-84683107 MS.gene037465:CDS 55.0%
!! TGGTGCATCTGGCTTTCCGA+GGG + chr4.4:84683231-84683250 MS.gene037465:CDS 55.0%
!!! TTTTCCGACGGTGGTGATGG+TGG + chr4.4:84683100-84683119 MS.gene037465:CDS 55.0%
CTCGGAAAGCCAGATGCACC+AGG - chr4.4:84683232-84683251 None:intergenic 60.0%
GGTGGTCATCCTGGTGCATC+TGG + chr4.4:84683220-84683239 MS.gene037465:CDS 60.0%
!! CTGGTGCATCTGGCTTTCCG+AGG + chr4.4:84683230-84683249 MS.gene037465:CDS 60.0%
!! GCAGGTGGATTTTCCGACGG+TGG + chr4.4:84683091-84683110 MS.gene037465:CDS 60.0%
!! GGTGCATCTGGCTTTCCGAG+GGG + chr4.4:84683232-84683251 MS.gene037465:CDS 60.0%
AATCCACCTGCACCTGGGGG+AGG - chr4.4:84683082-84683101 None:intergenic 65.0%
CGGTCCACCATCACCACCGT+CGG - chr4.4:84683107-84683126 None:intergenic 65.0%
AAGGGGCAGATGCCTCCCCC+AGG + chr4.4:84683067-84683086 MS.gene037465:CDS 70.0%
ATGCCTCCCCCAGGTGCAGG+TGG + chr4.4:84683076-84683095 MS.gene037465:CDS 70.0%
CAGATGCCTCCCCCAGGTGC+AGG + chr4.4:84683073-84683092 MS.gene037465:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 84681857 84685233 84681857 ID=MS.gene037465
chr4.4 mRNA 84681857 84685233 84681857 ID=MS.gene037465.t1;Parent=MS.gene037465
chr4.4 exon 84681857 84682021 84681857 ID=MS.gene037465.t1.exon1;Parent=MS.gene037465.t1
chr4.4 CDS 84681857 84682021 84681857 ID=cds.MS.gene037465.t1;Parent=MS.gene037465.t1
chr4.4 exon 84683010 84683428 84683010 ID=MS.gene037465.t1.exon2;Parent=MS.gene037465.t1
chr4.4 CDS 84683010 84683428 84683010 ID=cds.MS.gene037465.t1;Parent=MS.gene037465.t1
chr4.4 exon 84684792 84685233 84684792 ID=MS.gene037465.t1.exon3;Parent=MS.gene037465.t1
chr4.4 CDS 84684792 84685233 84684792 ID=cds.MS.gene037465.t1;Parent=MS.gene037465.t1
Gene Sequence

>MS.gene037465

ATGGGTGTAGATTACTATAAAGTCCTTCAGATAGATCGAAATGCAAAAGATGATGATCTCAAGAAAGCTTATCGCAAACTTGCTATGAAATGGCATCCTGATAAGAACCCTAATAACAAGAAAGATGCTGAAGCCAAATTCAAGCAAATCTCTGAAGCTTATGATGTATGTTTTTTTTTATCATTATTATGATGCTCAATTTTGATAATTTTAATTGGGCTGCGAGTTATTTTTGTAAAGTTTTGATTTTTTGGGGTTTTTGGGGTTGTAATTTGCATGTTGGGTGTGTTAAAGTTTGTGTTTTTATTGTTGATTTTGGATAATTTGGAAATTTTGGGGGTACAATTTGAATTGATGGGGTGTTTAATTTTGTGTTTTTCTTGTTGATTTTGGATCATTTGTTTGATTTTTGGGGTTGCATAATTTGGAATGTTGGGGGTGGTAAAATTTGATGTTTTTTTCGTTGTTGATTTTGGATCATTTGGACATTTTGGGGTTTTTGGGTTGCAAGCAATTTTAGCTGATGGGGTGTTTGATTTTGGATCATTTGGAATTGTGAAGTTTTAGGGTTACAATTTGGAATGATGGGGTGTTCAATTTTTGTGTTTTTCTTGTGATTTTGGACATTTGGAGTTTTGAGGTTTTAGGTTTACAATTTTAGCTTATGGGGTGTTTGATTTTGTGATTTTGGATCATTTGGAATTGTGAAGTTTCAGGGTTACAATTTGGAATTAAGGAGTGTGTTTAATTTTATGATTTTGGATAATTTGGAATTGTGGGTTTTTCCGGGTTACAATTTGGATTGGTTTTAATTGTGTTTTTCTTGTGATTTAGGATTACTTGGAAATTTCGGGGTTACAATTTGGAATTATGAGGTGTTTAATTTTGTGTTTTTGGATCAGTTGGATTTTTGGGTTACAATTTGAAATGTTGGGGGTGTTTAATTGTTATTTTCTTGTGATTTAGGATCATTTGGAATTGTGTTTTTTTGTTTTGATTGTGATTAGGTTTTGAGTGATCAACCAAAGAGAGAGGTGTATGATCAGTATGGTGAGATGTTTTTGAAATGTTGGGGAGTTGAATTTTGTGTTTTCTTGTGATTTAGAATCATTTGGAATTGTTGGTTTTGCTAGTGATTTCGATTTGTGAATAGGTTTTGAGTGATCCACAAAAGAGAGCTGTGTATGATCAATATGGTGAGGAGGGGTTGAAGGGGCAGATGCCTCCCCCAGGTGCAGGTGGATTTTCCGACGGTGGTGATGGTGGACCGACAATGTTCCGGTTCAATCCGAGAAGTGCGGATGACATATTTTCCGAGTTCTTCGGGTTTCAAAGACCATTTGGCGGTGGAATGGGTGATATGGGTGGTCATCCTGGTGCATCTGGCTTTCCGAGGGGAATGTTTAGGGATGACCTTTTCTCTTCCTTTAGGAATTCGGCCGGTGAAGGATCTGCCAATGTGATGAGGAAAAGTGCACCGATAGAGAGAACATTGCCTTGCAGTTTGGAGGATTTGTATAAAGGGACCACCAAAAAAATGAAGATTTCCAGAGATGTTACTGATTCCAGCGGGTGAGTTTTCTAGTTTAACTTGCTAACCTATATTAACCTAGTTGCATTGGTTTTATTGGATAGATTTAAATTATTGAATTTGAAGTCTAGTTCGACGATTTGTATTTTGTTATGTGTTGTTGGTTGATGATCATTTTCATAGTTTACATTTTCTGTTTTATATGCTCTAAATAATCAAATTTCCGTTAAGGCCTGTTCGGATAAACAGCTTAATTATATTAGGTGCTTACGAATAAGCTATTTCTATATCAAAAGATAAAATAAAGTCAAAATGTTTTCATACAAGTTGTTTTCATAAGCTATATTGGCGAGCTTATGCAAATAAGCTAAAAACAGCTTATGGACCTGTCATAAGCTGTTTCCATAAGCTCTTCCAAACAGACTCACAAGTCTTTATGCGAATAGATAAGTTCAAATAAGCCAATCTAAACAGGCCATAATAAAGTGGCAGATTTTGCGATGGTTCGAGACTTGAGAATCTGACATCTTTGATGTATAAGCAATTTTGATACTTATAGTTCTTAAATGGTTGTTGACATTACCTTTCTATATGCTATTTCATTCAAAATAATTCTTCTTTTGCTGGCACATAAATCTTTATCGCAATAGCTGTAGACCAACATTCTTCATCATGTTTATGAATTGCATTTTACAATTTGCATTGTTCATTCAAACTAATTAGTTGTGATGTGATGTAACTATTAAGGTTAATATTATAATAATGTAGAATGTGCAATAAGACATGTTTAAATGGAAATTTGAAACTAATATATATGAACAGTCCAGACTCAAGTTTTTTAGACAAATATTACATGTCAGCAAGTGAGAATTCATCTTTCCCATTTCATGAAATTATTCTTTCATATCATTGTCTAGCCGATGCTGTAGGAAATTGAAGGTTATTTACTTCATGTCATGTCATTCACTAATACCTGTGCCAGAAAATAGTAGAACTGAAGCTACAAAGTTACGTTGTTAGTAACTAACTTCATTACTATACATGTATAAGTATAACCAAAGTCATTTACTCATAAAATTTTTACTATATGTTTTATGCAATAGCTTTTGTTTTATCTGTCAACATTAAGTTCACATAGCATAAGATGTATTCAAAAGCTGTGTTGGAAAATAGCAGTTTGTTCAAAAGCAGTGTTATGCTATAGCGCTGCAATAGCCGTTATATGACAACACTTTCTACTAAATTGAGTATCGCAGAACAGCAGCGGTTTGTTAAAATTCCGCTGTGCTGTAGGGCTGCTATATCAGCTATATATATGACAACATTGTTCAAAAGTAACAACATATTAGAGCTGTGAATTGAATGGCATGAAACTAATCTACTGTATGTTTTCTTATTCTGAAGGAAGCCTACTACAGTTGAGGAAATTCTAACAATTGAGATCAAGCCAGGTTGGAAGAAAGGAACAAAGATAACTTTTCCGGAGAAGGGAAATGAACAGAGAGGCCTTATACCTGCAGACCTTGTTTTTATTATCGACGAGAAGCCTCATACTGTCTTCAAGAGGGACGGCAATGATCTTGTTGTTACACAGAAGATCTCTCTTGTAGAAGCTCTGACAGGTTACACTGCCCAAATAGCTACCCTCGATGGGAGGAATCTTACGGTCCCCGTCAACACCATCATTAGTCCATCATATGAAGAAGTAATTAAAGGAGAGGGTATGCCAATTCCTAAGGAACCTTCCAAAAAGGGAAACTTGAGAGTCAAGTTCAACGTCAAGTTTCCATCAAGACTTACATCAGAGCAGAAGACCGGCATCAAGCGATTATTGACATCTTCGTAA

Protein sequence

>MS.gene037465.t1

MGVDYYKVLQIDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKRAVYDQYGEEGLKGQMPPPGAGGFSDGGDGGPTMFRFNPRSADDIFSEFFGFQRPFGGGMGDMGGHPGASGFPRGMFRDDLFSSFRNSAGEGSANVMRKSAPIERTLPCSLEDLYKGTTKKMKISRDVTDSSGKPTTVEEILTIEIKPGWKKGTKITFPEKGNEQRGLIPADLVFIIDEKPHTVFKRDGNDLVVTQKISLVEALTGYTAQIATLDGRNLTVPVNTIISPSYEEVIKGEGMPIPKEPSKKGNLRVKFNVKFPSRLTSEQKTGIKRLLTSS