Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017879.t1 | XP_004509467.1 | 82.3 | 1236 | 202 | 3 | 1 | 1219 | 1 | 1236 | 0.00E+00 | 1495.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017879.t1 | Q9FJL0 | 62.1 | 1220 | 450 | 3 | 8 | 1218 | 23 | 1239 | 0.0e+00 | 1088.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017879.t1 | A0A1S2YT40 | 82.3 | 1236 | 202 | 3 | 1 | 1219 | 1 | 1236 | 0.0e+00 | 1495.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene043645 | MS.gene017879 | PPI |
| MS.gene95250 | MS.gene017879 | PPI |
| MS.gene073698 | MS.gene017879 | PPI |
| MS.gene017879 | MS.gene056169 | PPI |
| MS.gene064353 | MS.gene017879 | PPI |
| MS.gene017879 | MS.gene034360 | PPI |
| MS.gene45748 | MS.gene017879 | PPI |
| MS.gene064351 | MS.gene017879 | PPI |
| MS.gene035825 | MS.gene017879 | PPI |
| MS.gene070800 | MS.gene017879 | PPI |
| MS.gene73093 | MS.gene017879 | PPI |
| MS.gene043643 | MS.gene017879 | PPI |
| MS.gene035826 | MS.gene017879 | PPI |
| MS.gene040722 | MS.gene017879 | PPI |
| MS.gene017879 | MS.gene61618 | PPI |
| MS.gene016667 | MS.gene017879 | PPI |
| MS.gene035828 | MS.gene017879 | PPI |
| MS.gene059302 | MS.gene017879 | PPI |
| MS.gene99872 | MS.gene017879 | PPI |
| MS.gene043595 | MS.gene017879 | PPI |
| MS.gene66615 | MS.gene017879 | PPI |
| MS.gene35713 | MS.gene017879 | PPI |
| MS.gene061303 | MS.gene017879 | PPI |
| MS.gene84088 | MS.gene017879 | PPI |
| MS.gene043593 | MS.gene017879 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017879.t1 | MTR_8g072890 | 88.483 | 1233 | 128 | 3 | 1 | 1219 | 1 | 1233 | 0.0 | 2184 |
| MS.gene017879.t1 | MTR_7g091430 | 83.544 | 869 | 103 | 8 | 370 | 1219 | 4 | 851 | 0.0 | 1351 |
| MS.gene017879.t1 | MTR_7g091420 | 91.206 | 398 | 29 | 1 | 1 | 392 | 1 | 398 | 0.0 | 729 |
| MS.gene017879.t1 | MTR_8g037325 | 24.062 | 1280 | 750 | 48 | 9 | 1192 | 1 | 1154 | 9.62e-46 | 180 |
| MS.gene017879.t1 | MTR_1g051825 | 22.939 | 1286 | 780 | 49 | 9 | 1195 | 1 | 1174 | 6.93e-39 | 158 |
| MS.gene017879.t1 | MTR_1g051825 | 22.601 | 1292 | 777 | 49 | 9 | 1195 | 25 | 1198 | 8.45e-39 | 158 |
| MS.gene017879.t1 | MTR_0003s0460 | 27.089 | 347 | 192 | 9 | 11 | 353 | 6 | 295 | 7.46e-22 | 103 |
| MS.gene017879.t1 | MTR_1g069910 | 34.615 | 156 | 87 | 3 | 16 | 168 | 15 | 158 | 1.81e-21 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017879.t1 | AT5G48600 | 71.672 | 1232 | 334 | 3 | 2 | 1218 | 11 | 1242 | 0.0 | 1745 |
| MS.gene017879.t1 | AT5G48600 | 71.591 | 1232 | 332 | 4 | 2 | 1218 | 11 | 1239 | 0.0 | 1740 |
| MS.gene017879.t1 | AT3G54670 | 24.296 | 1350 | 742 | 49 | 4 | 1212 | 5 | 1215 | 2.10e-68 | 252 |
| MS.gene017879.t1 | AT5G62410 | 23.502 | 1268 | 772 | 45 | 9 | 1192 | 1 | 1154 | 9.46e-44 | 174 |
| MS.gene017879.t1 | AT3G47460 | 23.787 | 1278 | 753 | 48 | 9 | 1192 | 1 | 1151 | 3.36e-43 | 172 |
| MS.gene017879.t1 | AT3G47460 | 23.731 | 1281 | 753 | 48 | 9 | 1192 | 1 | 1154 | 9.16e-43 | 171 |
| MS.gene017879.t1 | AT2G27170 | 25.877 | 228 | 153 | 5 | 9 | 235 | 1 | 213 | 1.73e-13 | 75.9 |
| MS.gene017879.t1 | AT2G27170 | 25.877 | 228 | 153 | 5 | 9 | 235 | 1 | 213 | 1.73e-13 | 75.9 |
| MS.gene017879.t1 | AT2G27170 | 25.877 | 228 | 153 | 5 | 9 | 235 | 1 | 213 | 2.14e-13 | 75.9 |
| MS.gene017879.t1 | AT2G27170 | 25.877 | 228 | 153 | 5 | 9 | 235 | 1 | 213 | 2.14e-13 | 75.9 |
Find 213 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGAACTTGTTTACTTTCT+TGG | 0.119655 | 7.3:+17675634 | None:intergenic |
| TCATGAGGTCCTTGAGATTT+TGG | 0.144036 | 7.3:+17677250 | None:intergenic |
| TGCCATATCATTAAAGTTAA+AGG | 0.163850 | 7.3:-17669224 | MS.gene017879:CDS |
| GATGCTATGTTGTTTGTATT+TGG | 0.179705 | 7.3:-17678605 | MS.gene017879:CDS |
| TCACAGCATCCATCATTATT+TGG | 0.193280 | 7.3:+17671043 | None:intergenic |
| TGAAGGCTTTCTAGAATATT+TGG | 0.204321 | 7.3:-17677227 | MS.gene017879:CDS |
| TTTCAGATTGGATGAGTTTA+TGG | 0.215840 | 7.3:-17669257 | MS.gene017879:intron |
| AAGAGTTATCTCTCTTAAAA+TGG | 0.222577 | 7.3:-17675875 | MS.gene017879:CDS |
| TTCCTTTAACTTTAATGATA+TGG | 0.226102 | 7.3:+17669222 | None:intergenic |
| CGGCGAGTTGTTACTCTTGA+TGG | 0.232790 | 7.3:-17671222 | MS.gene017879:CDS |
| TTCTACCAATCACCACAATT+TGG | 0.265956 | 7.3:-17678452 | MS.gene017879:CDS |
| ACTCGAGCTTGTGGATTCTT+TGG | 0.273460 | 7.3:-17668269 | MS.gene017879:CDS |
| GAACCTTTACTAAATCAAAA+AGG | 0.309554 | 7.3:+17671631 | None:intergenic |
| ATACAAAGAATTGGAAATAA+AGG | 0.310278 | 7.3:-17669839 | MS.gene017879:CDS |
| TCTGCAATTGAATCAAGATT+TGG | 0.311602 | 7.3:+17669548 | None:intergenic |
| ACCTTTCTCTTTCAATTTCT+CGG | 0.312548 | 7.3:+17677426 | None:intergenic |
| TGCTGCTTGTGACCTGAAAA+AGG | 0.320460 | 7.3:-17669618 | MS.gene017879:CDS |
| GTGTTGACCTTGACAATAAT+AGG | 0.324515 | 7.3:-17677405 | MS.gene017879:CDS |
| GTGCCCATCTTCCCACCCTT+GGG | 0.327298 | 7.3:+17671153 | None:intergenic |
| GCAATATCAACAGCATGTTC+TGG | 0.331761 | 7.3:-17672485 | MS.gene017879:CDS |
| TTTCTAATTGAGAGAAGATC+TGG | 0.339272 | 7.3:-17676050 | MS.gene017879:CDS |
| GGGATATTATCCTCGAGTTT+TGG | 0.345073 | 7.3:+17675178 | None:intergenic |
| CATCTTGTTCAAGAGCAATT+CGG | 0.348705 | 7.3:+17673358 | None:intergenic |
| ATGCTATGTTGTTTGTATTT+GGG | 0.349242 | 7.3:-17678604 | MS.gene017879:CDS |
| TAATAGGTTTCTGATCCTTC+AGG | 0.349569 | 7.3:-17677389 | MS.gene017879:intron |
| AAATAAGCATTACCTCCTTC+TGG | 0.349782 | 7.3:+17670962 | None:intergenic |
| TGAGCTTGTTAAATTTCGTT+TGG | 0.352641 | 7.3:-17673822 | MS.gene017879:CDS |
| TGTGCCCATCTTCCCACCCT+TGG | 0.360544 | 7.3:+17671152 | None:intergenic |
| AAGGAACAATATGTTTGAAT+TGG | 0.368153 | 7.3:-17667686 | MS.gene017879:CDS |
| GAAGAAAGCATACAAAGAAT+TGG | 0.372232 | 7.3:-17669848 | MS.gene017879:CDS |
| TACAAAGAATTGGAAATAAA+GGG | 0.375070 | 7.3:-17669838 | MS.gene017879:CDS |
| GTTATCAATGTAATACTTAG+AGG | 0.377098 | 7.3:+17677474 | None:intergenic |
| TCAAATTGGATGCAGAATTC+AGG | 0.381557 | 7.3:-17669696 | MS.gene017879:intron |
| GGATGAAATTGACGCCGCTC+TGG | 0.383477 | 7.3:-17667968 | MS.gene017879:CDS |
| TCGTTTGGAGCTTGAACCTT+GGG | 0.390145 | 7.3:-17673807 | MS.gene017879:CDS |
| CAGAATTCAGGTAGATTTAG+TGG | 0.390540 | 7.3:-17669684 | MS.gene017879:CDS |
| TTTAGATTCAGAGAAGAGTC+AGG | 0.392067 | 7.3:-17673304 | MS.gene017879:CDS |
| AAATCTATCATGCACTCTTC+TGG | 0.394132 | 7.3:+17667584 | None:intergenic |
| ATGTATCCCTTCTATTTGTC+CGG | 0.400283 | 7.3:+17673245 | None:intergenic |
| AAGGAAACCGGACAAATAGA+AGG | 0.407101 | 7.3:-17673252 | MS.gene017879:CDS |
| ATTTGGGAAGAGAGCGAAAC+AGG | 0.413124 | 7.3:-17678588 | MS.gene017879:intron |
| ATTACTCTTTCCACTTCCAT+TGG | 0.417625 | 7.3:+17678634 | None:intergenic |
| CAAACACCGGGATGTCTTAG+AGG | 0.421679 | 7.3:-17670030 | MS.gene017879:CDS |
| TTACTCTTTCCACTTCCATT+GGG | 0.422733 | 7.3:+17678635 | None:intergenic |
| CAATATCAACAGCATGTTCT+GGG | 0.423763 | 7.3:-17672484 | MS.gene017879:CDS |
| AATATTTGGAAGATATTGTT+GGG | 0.426789 | 7.3:-17677213 | MS.gene017879:CDS |
| GCTGGAAGATAAAGTGGAAA+AGG | 0.429570 | 7.3:-17675333 | MS.gene017879:intron |
| GTGGATTTGATGCAACTTCA+AGG | 0.430163 | 7.3:+17670819 | None:intergenic |
| ACGCGTTGGCCCCTTTCATA+AGG | 0.431356 | 7.3:-17678756 | MS.gene017879:intron |
| ATCTTGTTCAAGAGCAATTC+GGG | 0.431998 | 7.3:+17673359 | None:intergenic |
| GGACGAATTGCGTGCATTTG+AGG | 0.436110 | 7.3:-17669970 | MS.gene017879:intron |
| GATGCGATTGAACAAAGTTT+CGG | 0.440406 | 7.3:-17678488 | MS.gene017879:CDS |
| CACAGTTGTTGCTAAGGATC+TGG | 0.441625 | 7.3:-17671565 | MS.gene017879:CDS |
| TAACCCCAAGGGTGGGAAGA+TGG | 0.442250 | 7.3:-17671157 | MS.gene017879:CDS |
| CTTCTGGCAAACGACAAAAC+TGG | 0.442633 | 7.3:+17667600 | None:intergenic |
| TTCGTTTGGAGCTTGAACCT+TGG | 0.449280 | 7.3:-17673808 | MS.gene017879:CDS |
| GACATACTGCTCAAGATGCT+TGG | 0.449959 | 7.3:+17669771 | None:intergenic |
| GAAGTTGACTAAAGGAATAG+AGG | 0.451975 | 7.3:-17670283 | MS.gene017879:CDS |
| ATTCGAAGAAGGAGAAAGAA+AGG | 0.452096 | 7.3:-17670260 | MS.gene017879:CDS |
| TTCCCAGACTCTTAGCTCAC+TGG | 0.454673 | 7.3:-17668040 | MS.gene017879:intron |
| CAATAAATAACCTTATGAAA+GGG | 0.455092 | 7.3:+17678746 | None:intergenic |
| GAATATTTGGAAGATATTGT+TGG | 0.456488 | 7.3:-17677214 | MS.gene017879:CDS |
| TAGGCAACACGCATAGCATA+TGG | 0.457628 | 7.3:-17671261 | MS.gene017879:CDS |
| GAATTGGCTGATCGACTTGT+TGG | 0.461151 | 7.3:-17667670 | MS.gene017879:CDS |
| CGATCGAGCTCGTTCTCTTG+TGG | 0.462152 | 7.3:+17670800 | None:intergenic |
| AGAGTAATATAGAAAAGAAC+AGG | 0.464491 | 7.3:-17673515 | MS.gene017879:CDS |
| TCTTTGATGAAAAGCCTAGA+TGG | 0.465321 | 7.3:+17678818 | None:intergenic |
| AAAGAACAGGCGTGAAGCAT+TGG | 0.465687 | 7.3:-17673502 | MS.gene017879:CDS |
| AGAAAGGTTAACTGAGGAGA+AGG | 0.466952 | 7.3:-17670244 | MS.gene017879:CDS |
| ATCATGAAAGCTAAGGAAAC+CGG | 0.470310 | 7.3:-17673264 | MS.gene017879:CDS |
| TCTTTGGATCCTTTCTCTGA+AGG | 0.472396 | 7.3:-17668253 | MS.gene017879:CDS |
| ATTCGAGCTACAAATGTGTC+TGG | 0.474855 | 7.3:-17671126 | MS.gene017879:CDS |
| TTCAAGAATGTGTCTATCGT+TGG | 0.475077 | 7.3:-17667849 | MS.gene017879:CDS |
| AAGCTAGCTGTTGATGATAC+AGG | 0.476092 | 7.3:-17675837 | MS.gene017879:CDS |
| TGGAATCACAACCACCATCT+AGG | 0.476334 | 7.3:-17678832 | MS.gene017879:CDS |
| CACAAGAGAACGAGCTCGAT+CGG | 0.477864 | 7.3:-17670799 | MS.gene017879:CDS |
| ACTATCCAAATTGTGGTGAT+TGG | 0.479332 | 7.3:+17678447 | None:intergenic |
| GACTGATGAGGAGAGGGTCT+TGG | 0.481328 | 7.3:-17675137 | MS.gene017879:CDS |
| AACCCCAAGGGTGGGAAGAT+GGG | 0.482978 | 7.3:-17671156 | MS.gene017879:CDS |
| TAATGATACGAGGAAGTGTA+AGG | 0.483258 | 7.3:-17675432 | MS.gene017879:CDS |
| TTGCCTAGAAGAAAATCTTA+AGG | 0.484912 | 7.3:-17675781 | MS.gene017879:CDS |
| TGAGAAAGAAAGAGACAGCT+TGG | 0.485868 | 7.3:-17676003 | MS.gene017879:CDS |
| TAACTTATCCGGTGGTGAAA+AGG | 0.487138 | 7.3:-17668182 | MS.gene017879:intron |
| CACAAGGTTCAAATAGAGAC+AGG | 0.488374 | 7.3:-17670321 | MS.gene017879:CDS |
| AAGCAATGCAACTGTTTCAC+AGG | 0.492234 | 7.3:+17669595 | None:intergenic |
| TCAAGAATGTGTCTATCGTT+GGG | 0.493155 | 7.3:-17667848 | MS.gene017879:CDS |
| AGAGAACGAGCTCGATCGGT+TGG | 0.493519 | 7.3:-17670795 | MS.gene017879:CDS |
| GCCCACACCGCTTTATGTAA+TGG | 0.495040 | 7.3:-17667989 | MS.gene017879:CDS |
| ATGCTCAGTTCATTATCATA+AGG | 0.502590 | 7.3:-17667800 | MS.gene017879:intron |
| CCAATAAATAACCTTATGAA+AGG | 0.502639 | 7.3:+17678745 | None:intergenic |
| GAGATCACAGAGAGTTCTAA+AGG | 0.503787 | 7.3:-17675112 | MS.gene017879:intron |
| AAGACAACGCCTTCAGAGAA+AGG | 0.504767 | 7.3:+17668244 | None:intergenic |
| GAAGTGTAAGGAAGAAATCA+AGG | 0.507289 | 7.3:-17675420 | MS.gene017879:CDS |
| CAAGAAGCTGGAAGATAAAG+TGG | 0.507740 | 7.3:-17675339 | MS.gene017879:CDS |
| TCTCAAGGACCTCATGATGA+AGG | 0.509105 | 7.3:-17677244 | MS.gene017879:CDS |
| TGTAATTCGCCAAATAATGA+TGG | 0.509904 | 7.3:-17671052 | MS.gene017879:CDS |
| AAGATCTGGGGTGGTGCAGA+TGG | 0.510779 | 7.3:-17676036 | MS.gene017879:CDS |
| ACCGAGAAATTGAAAGAGAA+AGG | 0.514385 | 7.3:-17677427 | MS.gene017879:CDS |
| ATTAAAATCTCAGAAGTTGA+AGG | 0.514578 | 7.3:-17670471 | MS.gene017879:CDS |
| AAGAACTTAATGCAGTTACT+CGG | 0.521670 | 7.3:-17669406 | MS.gene017879:CDS |
| TTAGACCACCAAAGAAAAGC+TGG | 0.523255 | 7.3:-17668216 | MS.gene017879:CDS |
| GCGAATTACATTCAATTCAA+CGG | 0.524192 | 7.3:+17671065 | None:intergenic |
| AATTGAAGCTCTTATGAAAG+AGG | 0.524750 | 7.3:-17675224 | MS.gene017879:CDS |
| GAATCGGAAGATCAAGAAGC+TGG | 0.526131 | 7.3:-17675351 | MS.gene017879:CDS |
| GAGAAGCCGTTGCTGCTGAG+AGG | 0.526390 | 7.3:-17671104 | MS.gene017879:CDS |
| AGTGGATCAAGAAAAGCTAC+AGG | 0.526510 | 7.3:-17669666 | MS.gene017879:CDS |
| TAATGCAGTTACTCGGGAGC+GGG | 0.527284 | 7.3:-17669399 | MS.gene017879:CDS |
| GGTGACCTAGGTGCCATTGA+TGG | 0.530320 | 7.3:-17673213 | MS.gene017879:intron |
| ATGATGAAGAAGTTGACTAA+AGG | 0.531726 | 7.3:-17670291 | MS.gene017879:CDS |
| GTGGTTGGACCCAATGGAAG+TGG | 0.534488 | 7.3:-17678644 | MS.gene017879:CDS |
| AGGAATAGAGGATTCGAAGA+AGG | 0.535754 | 7.3:-17670271 | MS.gene017879:CDS |
| ATTTCATCCATTACATAAAG+CGG | 0.536623 | 7.3:+17667982 | None:intergenic |
| TGGATTTGATGCAACTTCAA+GGG | 0.536894 | 7.3:+17670820 | None:intergenic |
| ATGGTGGAAACAATGAGTTT+CGG | 0.537319 | 7.3:-17671242 | MS.gene017879:CDS |
| TCTAGATGATTGACAAACAC+CGG | 0.537409 | 7.3:-17670043 | MS.gene017879:intron |
| TTGGGCATTATGTGAAAGAC+AGG | 0.538235 | 7.3:-17667830 | MS.gene017879:CDS |
| GATGAAATTGACGCCGCTCT+GGG | 0.538279 | 7.3:-17667967 | MS.gene017879:intron |
| TCCATTACATAAAGCGGTGT+GGG | 0.539263 | 7.3:+17667988 | None:intergenic |
| AAAAGCAATCATGAAAGCTA+AGG | 0.540084 | 7.3:-17673271 | MS.gene017879:CDS |
| TCGGCTGTGGTTGGACCCAA+TGG | 0.541762 | 7.3:-17678650 | MS.gene017879:CDS |
| GTTACTTCGCAGATATATTG+TGG | 0.543992 | 7.3:-17672411 | MS.gene017879:intron |
| AGCTCTTATGAAAGAGGGTG+AGG | 0.545203 | 7.3:-17675218 | MS.gene017879:CDS |
| GTGACGGTTAATCTCTGAGC+TGG | 0.545265 | 7.3:+17670341 | None:intergenic |
| AGAAAGTAAACAAGTTCTGA+AGG | 0.550815 | 7.3:-17675631 | MS.gene017879:CDS |
| TTGCTTCCTCTAAGACATCC+CGG | 0.550958 | 7.3:+17670024 | None:intergenic |
| AGAAGGGATACATGGACGCA+TGG | 0.552642 | 7.3:-17673235 | MS.gene017879:CDS |
| AGATTGGATGAGTTTATGGA+AGG | 0.553535 | 7.3:-17669253 | MS.gene017879:CDS |
| AATAAATAACCTTATGAAAG+GGG | 0.556525 | 7.3:+17678747 | None:intergenic |
| TGATGCAGAACTCGAGCTTG+TGG | 0.557366 | 7.3:-17668278 | MS.gene017879:CDS |
| AATCTGGAACAATGAGTGGT+GGG | 0.559306 | 7.3:-17671185 | MS.gene017879:CDS |
| TTCTAATTGAGAGAAGATCT+GGG | 0.561375 | 7.3:-17676049 | MS.gene017879:CDS |
| TGCCCATCTTCCCACCCTTG+GGG | 0.561884 | 7.3:+17671154 | None:intergenic |
| AAAAGATTTGATTGAGCACA+AGG | 0.561960 | 7.3:-17673783 | MS.gene017879:CDS |
| AAGAAAATCTTAAGGCGGAA+AGG | 0.562059 | 7.3:-17675773 | MS.gene017879:intron |
| CAGAGGAAAATAGAGAATGC+TGG | 0.563247 | 7.3:-17670503 | MS.gene017879:CDS |
| TCGAAACACAGTTGTTGCTA+AGG | 0.564507 | 7.3:-17671571 | MS.gene017879:CDS |
| GGATGCTGTGAAGCGATACC+AGG | 0.564903 | 7.3:-17671031 | MS.gene017879:CDS |
| GAAAGAAAGAGACAGCTTGG+AGG | 0.566243 | 7.3:-17676000 | MS.gene017879:intron |
| TTCTGGGCTTGACTATATTG+TGG | 0.567134 | 7.3:-17672468 | MS.gene017879:CDS |
| TTAATGCAGTTACTCGGGAG+CGG | 0.567334 | 7.3:-17669400 | MS.gene017879:CDS |
| TCTCTATTTGAACCTTGTGA+CGG | 0.571119 | 7.3:+17670325 | None:intergenic |
| CAATTCCCTCTCAGCAGCAA+CGG | 0.571413 | 7.3:+17671098 | None:intergenic |
| ATTGTTGACTGATGAGGAGA+GGG | 0.573441 | 7.3:-17675143 | MS.gene017879:CDS |
| AGAAGCCGTTGCTGCTGAGA+GGG | 0.574982 | 7.3:-17671103 | MS.gene017879:CDS |
| GGGGTAGTAACCCCAAGGGT+GGG | 0.575069 | 7.3:-17671164 | MS.gene017879:CDS |
| CATGGACGCATGGGTGACCT+AGG | 0.575540 | 7.3:-17673225 | MS.gene017879:CDS |
| AGAAAAGCTACAGGTTACAT+TGG | 0.578614 | 7.3:-17669657 | MS.gene017879:CDS |
| TCAGAAACCTATTATTGTCA+AGG | 0.579319 | 7.3:+17677398 | None:intergenic |
| AAAGTTAAAGGAAATGTACC+AGG | 0.579516 | 7.3:-17669212 | MS.gene017879:intron |
| GGAGAAAGAAAGGTTAACTG+AGG | 0.579946 | 7.3:-17670250 | MS.gene017879:CDS |
| TGATATCAGATATCGGAAGA+AGG | 0.587831 | 7.3:-17669453 | MS.gene017879:intron |
| ATCTGGAACAATGAGTGGTG+GGG | 0.588929 | 7.3:-17671184 | MS.gene017879:CDS |
| TCTCTTAAAATGGAAAGAGA+AGG | 0.593950 | 7.3:-17675865 | MS.gene017879:CDS |
| AAGAAATCAAGGAGTTTGAG+AGG | 0.594358 | 7.3:-17675409 | MS.gene017879:CDS |
| CAACTATATGAAAAGACAAG+AGG | 0.594819 | 7.3:-17675589 | MS.gene017879:intron |
| TTAGATTCAGAGAAGAGTCA+GGG | 0.595974 | 7.3:-17673303 | MS.gene017879:CDS |
| AGAACTTAATGCAGTTACTC+GGG | 0.595991 | 7.3:-17669405 | MS.gene017879:CDS |
| TTATGTGAAAGACAGGACTA+AGG | 0.596589 | 7.3:-17667823 | MS.gene017879:CDS |
| ATTGAAGCTCTTATGAAAGA+GGG | 0.596857 | 7.3:-17675223 | MS.gene017879:CDS |
| GGACAAATAGAAGGGATACA+TGG | 0.597068 | 7.3:-17673243 | MS.gene017879:CDS |
| ATCCATTACATAAAGCGGTG+TGG | 0.597635 | 7.3:+17667987 | None:intergenic |
| TTTAGGTTTCAGAGCTTCAG+AGG | 0.598437 | 7.3:-17670520 | MS.gene017879:intron |
| TATGTATGACTGCAGGAAGA+TGG | 0.600880 | 7.3:-17677559 | MS.gene017879:intron |
| GAAGGGATACATGGACGCAT+GGG | 0.601275 | 7.3:-17673234 | MS.gene017879:CDS |
| TCTGGAACAATGAGTGGTGG+GGG | 0.601534 | 7.3:-17671183 | MS.gene017879:CDS |
| TCTAGAAAGCCTTCATCATG+AGG | 0.602664 | 7.3:+17677235 | None:intergenic |
| CCACAATTTGGATAGTGCTG+AGG | 0.603021 | 7.3:-17678440 | MS.gene017879:CDS |
| TACGCTGGCGAACAACGCGT+TGG | 0.605936 | 7.3:-17678770 | MS.gene017879:CDS |
| CTTATGAAACCAAAATCTCA+AGG | 0.608826 | 7.3:-17677259 | MS.gene017879:CDS |
| GGCTAAGCTTCTAAGTGAGA+AGG | 0.608920 | 7.3:-17673735 | MS.gene017879:intron |
| CCTCAGCACTATCCAAATTG+TGG | 0.610119 | 7.3:+17678440 | None:intergenic |
| ACAAAGAATTGGAAATAAAG+GGG | 0.610292 | 7.3:-17669837 | MS.gene017879:CDS |
| CTAGATGATTGACAAACACC+GGG | 0.610825 | 7.3:-17670042 | MS.gene017879:intron |
| CGGAACTTCAAATCTTACGC+TGG | 0.612204 | 7.3:-17678785 | MS.gene017879:CDS |
| TGTTGCTAAGGATCTGGACC+AGG | 0.614674 | 7.3:-17671559 | MS.gene017879:intron |
| TGGGCTTGACTATATTGTGG+TGG | 0.614719 | 7.3:-17672465 | MS.gene017879:CDS |
| AAGAGTGTAAGCACTCCAGA+GGG | 0.615160 | 7.3:-17671663 | MS.gene017879:CDS |
| AGGAAACCGGACAAATAGAA+GGG | 0.620330 | 7.3:-17673251 | MS.gene017879:CDS |
| AAATCTGGAACAATGAGTGG+TGG | 0.621887 | 7.3:-17671186 | MS.gene017879:CDS |
| GAGATTAATAGACTTGCTGA+CGG | 0.624261 | 7.3:-17670737 | MS.gene017879:CDS |
| AATTGTTGACTGATGAGGAG+AGG | 0.624463 | 7.3:-17675144 | MS.gene017879:CDS |
| CTAGCTGTTGATGATACAGG+TGG | 0.625963 | 7.3:-17675834 | MS.gene017879:CDS |
| CTCAGAGATTAACCGTCACA+AGG | 0.626843 | 7.3:-17670337 | MS.gene017879:CDS |
| TGAACAAGATGCTAGACAGA+AGG | 0.631428 | 7.3:-17673346 | MS.gene017879:CDS |
| TAATATGATACCAAAACTCG+AGG | 0.633160 | 7.3:-17675188 | MS.gene017879:CDS |
| ACTTACCATCAATGGCACCT+AGG | 0.641403 | 7.3:+17673208 | None:intergenic |
| CCTAGAAGAAAATCTTAAGG+CGG | 0.646188 | 7.3:-17675778 | MS.gene017879:CDS |
| AATATTGCTAACTTATCCGG+TGG | 0.647047 | 7.3:-17668190 | MS.gene017879:CDS |
| TGGCAAACGACAAAACTGGA+CGG | 0.650265 | 7.3:+17667604 | None:intergenic |
| TGTTTGCAGATGATTACACT+CGG | 0.655105 | 7.3:-17668304 | MS.gene017879:intron |
| GAGTGTAAGCACTCCAGAGG+GGG | 0.656730 | 7.3:-17671661 | MS.gene017879:CDS |
| GCAACACGCATAGCATATGG+TGG | 0.659363 | 7.3:-17671258 | MS.gene017879:CDS |
| GCTGGCTAAAAGCCAGAAGG+AGG | 0.660136 | 7.3:-17670974 | MS.gene017879:intron |
| GCTTGACGTTGCATCTAGTG+AGG | 0.660861 | 7.3:-17673756 | MS.gene017879:CDS |
| GGAGCTGGCTAAAAGCCAGA+AGG | 0.671461 | 7.3:-17670977 | MS.gene017879:CDS |
| TCTAATTGAGAGAAGATCTG+GGG | 0.672633 | 7.3:-17676048 | MS.gene017879:CDS |
| TGTGAAGCGATACCAGGTCG+CGG | 0.672656 | 7.3:-17671025 | MS.gene017879:CDS |
| AAAATGGATGAGTTACAAGT+GGG | 0.673335 | 7.3:-17675810 | MS.gene017879:CDS |
| AAAGAGTGTAAGCACTCCAG+AGG | 0.677800 | 7.3:-17671664 | MS.gene017879:CDS |
| TCATCAAAGAGATGGTGATG+CGG | 0.678761 | 7.3:-17678805 | MS.gene017879:CDS |
| AAAGATTTGATTGAGCACAA+GGG | 0.679087 | 7.3:-17673782 | MS.gene017879:CDS |
| AATTGAGAGAAGATCTGGGG+TGG | 0.681873 | 7.3:-17676045 | MS.gene017879:CDS |
| ACAAGGTTCAAATAGAGACA+GGG | 0.690452 | 7.3:-17670320 | MS.gene017879:CDS |
| TCTGCGAAGTAACTCAACAC+AGG | 0.692275 | 7.3:+17672421 | None:intergenic |
| AGCATTGGAAGCTCACAGAG+TGG | 0.704040 | 7.3:-17673487 | MS.gene017879:CDS |
| AGGAAAATAGAGAATGCTGG+AGG | 0.709259 | 7.3:-17670500 | MS.gene017879:CDS |
| TTGATGAAAAGCCTAGATGG+TGG | 0.721645 | 7.3:+17678821 | None:intergenic |
| GAATTACAAGAATACACGAG+AGG | 0.730553 | 7.3:-17670166 | MS.gene017879:intron |
| GAAATTTAACAAGCTCAGAG+CGG | 0.731245 | 7.3:+17673828 | None:intergenic |
| TTGCAGATGATTACACTCGG+AGG | 0.735139 | 7.3:-17668301 | MS.gene017879:intron |
| AGAGTGTAAGCACTCCAGAG+GGG | 0.746694 | 7.3:-17671662 | MS.gene017879:CDS |
| AGGAGCTAGATAATGATACG+AGG | 0.761248 | 7.3:-17675442 | MS.gene017879:CDS |
| GTTAATAGAAGTACCCAGAG+CGG | 0.768533 | 7.3:+17667954 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 17667591 | 17678855 | 17667591 | ID=MS.gene017879 |
| chr7.3 | mRNA | 17667591 | 17678855 | 17667591 | ID=MS.gene017879.t1;Parent=MS.gene017879 |
| chr7.3 | exon | 17678757 | 17678855 | 17678757 | ID=MS.gene017879.t1.exon1;Parent=MS.gene017879.t1 |
| chr7.3 | CDS | 17678757 | 17678855 | 17678757 | ID=cds.MS.gene017879.t1;Parent=MS.gene017879.t1 |
| chr7.3 | exon | 17678589 | 17678678 | 17678589 | ID=MS.gene017879.t1.exon2;Parent=MS.gene017879.t1 |
| chr7.3 | CDS | 17678589 | 17678678 | 17678589 | ID=cds.MS.gene017879.t1;Parent=MS.gene017879.t1 |
| chr7.3 | exon | 17678408 | 17678509 | 17678408 | ID=MS.gene017879.t1.exon3;Parent=MS.gene017879.t1 |
| chr7.3 | CDS | 17678408 | 17678509 | 17678408 | ID=cds.MS.gene017879.t1;Parent=MS.gene017879.t1 |
| chr7.3 | exon | 17677390 | 17677566 | 17677390 | ID=MS.gene017879.t1.exon4;Parent=MS.gene017879.t1 |
| chr7.3 | CDS | 17677390 | 17677566 | 17677390 | ID=cds.MS.gene017879.t1;Parent=MS.gene017879.t1 |
| chr7.3 | exon | 17677172 | 17677302 | 17677172 | ID=MS.gene017879.t1.exon5;Parent=MS.gene017879.t1 |
| chr7.3 | CDS | 17677172 | 17677302 | 17677172 | ID=cds.MS.gene017879.t1;Parent=MS.gene017879.t1 |
| chr7.3 | exon | 17676001 | 17676079 | 17676001 | ID=MS.gene017879.t1.exon6;Parent=MS.gene017879.t1 |
| chr7.3 | CDS | 17676001 | 17676079 | 17676001 | ID=cds.MS.gene017879.t1;Parent=MS.gene017879.t1 |
| chr7.3 | exon | 17675774 | 17675931 | 17675774 | ID=MS.gene017879.t1.exon7;Parent=MS.gene017879.t1 |
| chr7.3 | CDS | 17675774 | 17675931 | 17675774 | ID=cds.MS.gene017879.t1;Parent=MS.gene017879.t1 |
| chr7.3 | exon | 17675590 | 17675665 | 17675590 | ID=MS.gene017879.t1.exon8;Parent=MS.gene017879.t1 |
| chr7.3 | CDS | 17675590 | 17675665 | 17675590 | ID=cds.MS.gene017879.t1;Parent=MS.gene017879.t1 |
| chr7.3 | exon | 17675334 | 17675462 | 17675334 | ID=MS.gene017879.t1.exon9;Parent=MS.gene017879.t1 |
| chr7.3 | CDS | 17675334 | 17675462 | 17675334 | ID=cds.MS.gene017879.t1;Parent=MS.gene017879.t1 |
| chr7.3 | exon | 17675113 | 17675257 | 17675113 | ID=MS.gene017879.t1.exon10;Parent=MS.gene017879.t1 |
| chr7.3 | CDS | 17675113 | 17675257 | 17675113 | ID=cds.MS.gene017879.t1;Parent=MS.gene017879.t1 |
| chr7.3 | exon | 17673736 | 17673866 | 17673736 | ID=MS.gene017879.t1.exon11;Parent=MS.gene017879.t1 |
| chr7.3 | CDS | 17673736 | 17673866 | 17673736 | ID=cds.MS.gene017879.t1;Parent=MS.gene017879.t1 |
| chr7.3 | exon | 17673482 | 17673634 | 17673482 | ID=MS.gene017879.t1.exon12;Parent=MS.gene017879.t1 |
| chr7.3 | CDS | 17673482 | 17673634 | 17673482 | ID=cds.MS.gene017879.t1;Parent=MS.gene017879.t1 |
| chr7.3 | exon | 17673214 | 17673403 | 17673214 | ID=MS.gene017879.t1.exon13;Parent=MS.gene017879.t1 |
| chr7.3 | CDS | 17673214 | 17673403 | 17673214 | ID=cds.MS.gene017879.t1;Parent=MS.gene017879.t1 |
| chr7.3 | exon | 17672412 | 17672521 | 17672412 | ID=MS.gene017879.t1.exon14;Parent=MS.gene017879.t1 |
| chr7.3 | CDS | 17672412 | 17672521 | 17672412 | ID=cds.MS.gene017879.t1;Parent=MS.gene017879.t1 |
| chr7.3 | exon | 17671560 | 17671718 | 17671560 | ID=MS.gene017879.t1.exon15;Parent=MS.gene017879.t1 |
| chr7.3 | CDS | 17671560 | 17671718 | 17671560 | ID=cds.MS.gene017879.t1;Parent=MS.gene017879.t1 |
| chr7.3 | exon | 17670975 | 17671280 | 17670975 | ID=MS.gene017879.t1.exon16;Parent=MS.gene017879.t1 |
| chr7.3 | CDS | 17670975 | 17671280 | 17670975 | ID=cds.MS.gene017879.t1;Parent=MS.gene017879.t1 |
| chr7.3 | exon | 17670715 | 17670891 | 17670715 | ID=MS.gene017879.t1.exon17;Parent=MS.gene017879.t1 |
| chr7.3 | CDS | 17670715 | 17670891 | 17670715 | ID=cds.MS.gene017879.t1;Parent=MS.gene017879.t1 |
| chr7.3 | exon | 17670454 | 17670537 | 17670454 | ID=MS.gene017879.t1.exon18;Parent=MS.gene017879.t1 |
| chr7.3 | CDS | 17670454 | 17670537 | 17670454 | ID=cds.MS.gene017879.t1;Parent=MS.gene017879.t1 |
| chr7.3 | exon | 17670167 | 17670376 | 17670167 | ID=MS.gene017879.t1.exon19;Parent=MS.gene017879.t1 |
| chr7.3 | CDS | 17670167 | 17670376 | 17670167 | ID=cds.MS.gene017879.t1;Parent=MS.gene017879.t1 |
| chr7.3 | exon | 17669971 | 17670060 | 17669971 | ID=MS.gene017879.t1.exon20;Parent=MS.gene017879.t1 |
| chr7.3 | CDS | 17669971 | 17670060 | 17669971 | ID=cds.MS.gene017879.t1;Parent=MS.gene017879.t1 |
| chr7.3 | exon | 17669778 | 17669899 | 17669778 | ID=MS.gene017879.t1.exon21;Parent=MS.gene017879.t1 |
| chr7.3 | CDS | 17669778 | 17669899 | 17669778 | ID=cds.MS.gene017879.t1;Parent=MS.gene017879.t1 |
| chr7.3 | exon | 17669548 | 17669703 | 17669548 | ID=MS.gene017879.t1.exon22;Parent=MS.gene017879.t1 |
| chr7.3 | CDS | 17669548 | 17669703 | 17669548 | ID=cds.MS.gene017879.t1;Parent=MS.gene017879.t1 |
| chr7.3 | exon | 17669359 | 17669466 | 17669359 | ID=MS.gene017879.t1.exon23;Parent=MS.gene017879.t1 |
| chr7.3 | CDS | 17669359 | 17669466 | 17669359 | ID=cds.MS.gene017879.t1;Parent=MS.gene017879.t1 |
| chr7.3 | exon | 17669213 | 17669273 | 17669213 | ID=MS.gene017879.t1.exon24;Parent=MS.gene017879.t1 |
| chr7.3 | CDS | 17669213 | 17669273 | 17669213 | ID=cds.MS.gene017879.t1;Parent=MS.gene017879.t1 |
| chr7.3 | exon | 17668183 | 17668317 | 17668183 | ID=MS.gene017879.t1.exon25;Parent=MS.gene017879.t1 |
| chr7.3 | CDS | 17668183 | 17668317 | 17668183 | ID=cds.MS.gene017879.t1;Parent=MS.gene017879.t1 |
| chr7.3 | exon | 17667968 | 17668055 | 17667968 | ID=MS.gene017879.t1.exon26;Parent=MS.gene017879.t1 |
| chr7.3 | CDS | 17667968 | 17668055 | 17667968 | ID=cds.MS.gene017879.t1;Parent=MS.gene017879.t1 |
| chr7.3 | exon | 17667801 | 17667873 | 17667801 | ID=MS.gene017879.t1.exon27;Parent=MS.gene017879.t1 |
| chr7.3 | CDS | 17667801 | 17667873 | 17667801 | ID=cds.MS.gene017879.t1;Parent=MS.gene017879.t1 |
| chr7.3 | exon | 17667591 | 17667711 | 17667591 | ID=MS.gene017879.t1.exon28;Parent=MS.gene017879.t1 |
| chr7.3 | CDS | 17667591 | 17667711 | 17667591 | ID=cds.MS.gene017879.t1;Parent=MS.gene017879.t1 |
| Gene Sequence |
| Protein sequence |
