Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84088.t1 | XP_013467432.1 | 96.5 | 1315 | 37 | 2 | 1 | 1309 | 1 | 1312 | 0.00E+00 | 2362 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84088.t1 | Q8K2Z4 | 29.3 | 1247 | 745 | 28 | 69 | 1201 | 60 | 1283 | 2.1e-130 | 468.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84088.t1 | A0A072VHH5 | 96.5 | 1315 | 37 | 2 | 1 | 1309 | 1 | 1312 | 0.0e+00 | 2362.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049397 | MS.gene84088 | 0.81257 | 3.97E-51 | -1.69E-46 |
| MS.gene049596 | MS.gene84088 | 0.84309 | 1.74E-58 | -1.69E-46 |
| MS.gene04985 | MS.gene84088 | 0.840013 | 1.12E-57 | -1.69E-46 |
| MS.gene049989 | MS.gene84088 | 0.895602 | 8.20E-76 | -1.69E-46 |
| MS.gene050297 | MS.gene84088 | 0.889397 | 2.51E-73 | -1.69E-46 |
| MS.gene050648 | MS.gene84088 | 0.838749 | 2.39E-57 | -1.69E-46 |
| MS.gene051094 | MS.gene84088 | 0.830745 | 2.47E-55 | -1.69E-46 |
| MS.gene05124 | MS.gene84088 | 0.835125 | 2.01E-56 | -1.69E-46 |
| MS.gene051263 | MS.gene84088 | 0.834389 | 3.08E-56 | -1.69E-46 |
| MS.gene051629 | MS.gene84088 | 0.834243 | 3.35E-56 | -1.69E-46 |
| MS.gene052143 | MS.gene84088 | 0.825592 | 4.31E-54 | -1.69E-46 |
| MS.gene052367 | MS.gene84088 | 0.837464 | 5.12E-57 | -1.69E-46 |
| MS.gene053173 | MS.gene84088 | 0.836464 | 9.21E-57 | -1.69E-46 |
| MS.gene053348 | MS.gene84088 | 0.834884 | 2.32E-56 | -1.69E-46 |
| MS.gene053416 | MS.gene84088 | 0.854665 | 1.06E-61 | -1.69E-46 |
| MS.gene053417 | MS.gene84088 | 0.851302 | 9.70E-61 | -1.69E-46 |
| MS.gene054551 | MS.gene84088 | 0.834149 | 3.54E-56 | -1.69E-46 |
| MS.gene054593 | MS.gene84088 | 0.811046 | 8.52E-51 | -1.69E-46 |
| MS.gene054643 | MS.gene84088 | 0.834117 | 3.61E-56 | -1.69E-46 |
| MS.gene055411 | MS.gene84088 | 0.855658 | 5.44E-62 | -1.69E-46 |
| MS.gene055957 | MS.gene84088 | 0.843401 | 1.43E-58 | -1.69E-46 |
| MS.gene056041 | MS.gene84088 | 0.849411 | 3.29E-60 | -1.69E-46 |
| MS.gene056042 | MS.gene84088 | 0.83235 | 9.94E-56 | -1.69E-46 |
| MS.gene05640 | MS.gene84088 | 0.814445 | 1.54E-51 | -1.69E-46 |
| MS.gene056526 | MS.gene84088 | 0.837852 | 4.07E-57 | -1.69E-46 |
| MS.gene057458 | MS.gene84088 | 0.81726 | 3.62E-52 | -1.69E-46 |
| MS.gene058196 | MS.gene84088 | 0.842615 | 2.32E-58 | -1.69E-46 |
| MS.gene058197 | MS.gene84088 | 0.849752 | 2.64E-60 | -1.69E-46 |
| MS.gene058198 | MS.gene84088 | 0.852462 | 4.54E-61 | -1.69E-46 |
| MS.gene058818 | MS.gene84088 | 0.854939 | 8.81E-62 | -1.69E-46 |
| MS.gene058844 | MS.gene84088 | 0.826262 | 2.99E-54 | -1.69E-46 |
| MS.gene059300 | MS.gene84088 | 0.867368 | 1.44E-65 | -1.69E-46 |
| MS.gene059553 | MS.gene84088 | 0.820396 | 7.01E-53 | -1.69E-46 |
| MS.gene060473 | MS.gene84088 | 0.863855 | 1.85E-64 | -1.69E-46 |
| MS.gene060565 | MS.gene84088 | 0.870452 | 1.44E-66 | -1.69E-46 |
| MS.gene06057 | MS.gene84088 | 0.867407 | 1.40E-65 | -1.69E-46 |
| MS.gene06093 | MS.gene84088 | 0.833876 | 4.15E-56 | -1.69E-46 |
| MS.gene061099 | MS.gene84088 | 0.828515 | 8.61E-55 | -1.69E-46 |
| MS.gene061260 | MS.gene84088 | 0.867684 | 1.14E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene059302 | MS.gene84088 | PPI |
| MS.gene66615 | MS.gene84088 | PPI |
| MS.gene061303 | MS.gene84088 | PPI |
| MS.gene95250 | MS.gene84088 | PPI |
| MS.gene39049 | MS.gene84088 | PPI |
| MS.gene99578 | MS.gene84088 | PPI |
| MS.gene84088 | MS.gene014108 | PPI |
| MS.gene84088 | MS.gene69993 | PPI |
| MS.gene45748 | MS.gene84088 | PPI |
| MS.gene84088 | MS.gene034360 | PPI |
| MS.gene066477 | MS.gene84088 | PPI |
| MS.gene84088 | MS.gene42530 | PPI |
| MS.gene84088 | MS.gene056169 | PPI |
| MS.gene84088 | MS.gene61618 | PPI |
| MS.gene070800 | MS.gene84088 | PPI |
| MS.gene84088 | MS.gene017879 | PPI |
| MS.gene016667 | MS.gene84088 | PPI |
| MS.gene35713 | MS.gene84088 | PPI |
| MS.gene84088 | MS.gene23837 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84088.t1 | MTR_1g051230 | 93.655 | 1387 | 30 | 3 | 1 | 1332 | 1 | 1384 | 0.0 | 2645 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84088.t1 | AT3G57060 | 70.463 | 1273 | 347 | 11 | 1 | 1256 | 1 | 1261 | 0.0 | 1834 |
| MS.gene84088.t1 | AT3G57060 | 70.463 | 1273 | 347 | 11 | 1 | 1256 | 1 | 1261 | 0.0 | 1834 |
| MS.gene84088.t1 | AT3G57060 | 70.463 | 1273 | 347 | 11 | 1 | 1256 | 1 | 1261 | 0.0 | 1833 |
Find 276 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAAGCTTTGTAGAAATTT+TGG | 0.106400 | 1.4:-37675908 | MS.gene84088:CDS |
| AATAATAGTGTTAGAATATT+TGG | 0.138633 | 1.4:-37676578 | MS.gene84088:CDS |
| CAATCTTCTGTTGATGGATT+TGG | 0.143554 | 1.4:+37674163 | None:intergenic |
| ATGTTAGTTGATATCAATTT+TGG | 0.153440 | 1.4:+37678760 | None:intergenic |
| GGCAAAGAAGTTTGCCAAAT+TGG | 0.178271 | 1.4:-37674274 | MS.gene84088:CDS |
| TATCGCAGATATCAGCTTTA+TGG | 0.179154 | 1.4:-37676829 | MS.gene84088:intron |
| GCAGAAAAGGAAATTGTTTC+TGG | 0.193555 | 1.4:-37675977 | MS.gene84088:CDS |
| ACTTCCATTGTTAGGGAAAT+TGG | 0.198161 | 1.4:-37678868 | MS.gene84088:CDS |
| TTTGGCTTCCAGCAAATATT+TGG | 0.229758 | 1.4:-37676529 | MS.gene84088:CDS |
| ATCCCTCAGTTCTGTTTATA+AGG | 0.231793 | 1.4:-37676423 | MS.gene84088:CDS |
| GCTAGTATCAAAAGCGTTTA+AGG | 0.234254 | 1.4:-37678665 | MS.gene84088:CDS |
| TCTACAAAGCTTTGACAAAA+AGG | 0.237517 | 1.4:+37675916 | None:intergenic |
| TGCTGTCAATCTTCTGTTGA+TGG | 0.244441 | 1.4:+37674157 | None:intergenic |
| TTACAAGATATCATTGATAT+TGG | 0.245951 | 1.4:-37676698 | MS.gene84088:CDS |
| ACAAATGCTTTGTCTATAAA+TGG | 0.250566 | 1.4:-37672862 | MS.gene84088:CDS |
| ATGTCAGCTGCTATGATTTC+TGG | 0.254360 | 1.4:+37676455 | None:intergenic |
| GTCTAAAGTTGATCCTTTAC+TGG | 0.254602 | 1.4:-37676663 | MS.gene84088:CDS |
| AGGAGATGTTTGTAGGGTTT+TGG | 0.257631 | 1.4:+37680516 | None:intergenic |
| ATTCGACCGTGTTTGCTCTT+TGG | 0.264272 | 1.4:-37680402 | MS.gene84088:CDS |
| CGGTTCAAAGGACAAGAATT+TGG | 0.269747 | 1.4:-37675954 | MS.gene84088:CDS |
| AACCCGTGCATTCGTGGAAT+TGG | 0.274412 | 1.4:-37679302 | MS.gene84088:CDS |
| TCTTCAGTATCCAGAATTAC+AGG | 0.274744 | 1.4:-37675568 | MS.gene84088:intron |
| AGTTGGCACACTGGTCTCTA+AGG | 0.298241 | 1.4:-37677534 | MS.gene84088:CDS |
| GATAAAATATACCTTCTTAA+TGG | 0.298342 | 1.4:+37674772 | None:intergenic |
| TCGGGAAGCAAATTATATAT+TGG | 0.302197 | 1.4:+37674869 | None:intergenic |
| ATAGTTTAATTACTGGCTTT+TGG | 0.305867 | 1.4:-37676547 | MS.gene84088:CDS |
| CACAAGGAGTCGTGTGCTTC+AGG | 0.306091 | 1.4:-37678545 | MS.gene84088:CDS |
| GAGAGGGAGGAGATGTTTGT+AGG | 0.314010 | 1.4:+37680509 | None:intergenic |
| AATCTTCTGTTGATGGATTT+GGG | 0.324531 | 1.4:+37674164 | None:intergenic |
| AGTCCATGGTTCTAAAAGAT+TGG | 0.329611 | 1.4:+37675288 | None:intergenic |
| GCCTTGCAACTTCCATTGTT+AGG | 0.335205 | 1.4:-37678876 | MS.gene84088:CDS |
| GTGTCTTTGACATAATCTTT+TGG | 0.335775 | 1.4:+37678835 | None:intergenic |
| TGCAAGACTCAAGAGATTCT+TGG | 0.336217 | 1.4:+37677598 | None:intergenic |
| ATCGCAGATATCAGCTTTAT+GGG | 0.340239 | 1.4:-37676828 | MS.gene84088:intron |
| TACAAGATATCATTGATATT+GGG | 0.340428 | 1.4:-37676697 | MS.gene84088:CDS |
| AGTAGGGTGAACAGCATAAA+TGG | 0.350048 | 1.4:+37676478 | None:intergenic |
| TGTAAGCAATTTCAAATTGA+TGG | 0.350648 | 1.4:-37677974 | MS.gene84088:CDS |
| CAGCTATCATTTACTGAAAA+GGG | 0.353521 | 1.4:-37674481 | MS.gene84088:CDS |
| GATGCCCTCTGTCGCATAAT+CGG | 0.354852 | 1.4:-37679033 | MS.gene84088:CDS |
| GATATCATTGATATTGGGTT+TGG | 0.360679 | 1.4:-37676692 | MS.gene84088:CDS |
| AATATAGACCAATTGATTCA+TGG | 0.360975 | 1.4:+37676304 | None:intergenic |
| ATTGCAGAAGCCTGTAATTC+TGG | 0.361958 | 1.4:+37675558 | None:intergenic |
| TTACCAGGGGCAACATCTTT+CGG | 0.364533 | 1.4:+37677936 | None:intergenic |
| GTGGAGAGTCTTATAAGATT+AGG | 0.370785 | 1.4:-37678714 | MS.gene84088:CDS |
| CAACTTTCTGATCTTGCATT+GGG | 0.374150 | 1.4:-37672132 | MS.gene84088:CDS |
| ATTCTCGATAGTTTAATTAC+TGG | 0.376639 | 1.4:-37676554 | MS.gene84088:CDS |
| GAGTCGTGTGCTTCAGGTGT+GGG | 0.377587 | 1.4:-37678539 | MS.gene84088:CDS |
| TGTTAGGAAGAATGCGGTTC+TGG | 0.378556 | 1.4:-37675227 | MS.gene84088:CDS |
| CTAATGTTGATTCGCTTTCA+AGG | 0.378765 | 1.4:-37680298 | MS.gene84088:CDS |
| GAATGCTCTTGTAGCTGTGC+TGG | 0.379406 | 1.4:-37678692 | MS.gene84088:CDS |
| GTTAGCTTTGTGTCGATTGA+TGG | 0.387425 | 1.4:-37675535 | MS.gene84088:CDS |
| AGCTTCATTTGAGGCAACTT+TGG | 0.388735 | 1.4:-37678353 | MS.gene84088:CDS |
| TGGTGGAAAAGCTATGTAAT+AGG | 0.392064 | 1.4:-37674664 | MS.gene84088:CDS |
| TTTCTTGAACTTTCCAAGAA+AGG | 0.394942 | 1.4:-37675006 | MS.gene84088:intron |
| TCGAAGTCTAATACATCTTC+AGG | 0.395081 | 1.4:-37674096 | MS.gene84088:intron |
| TCAGCTATCATTTACTGAAA+AGG | 0.396948 | 1.4:-37674482 | MS.gene84088:CDS |
| GGCATTCTTGTTCCTCACTT+TGG | 0.397944 | 1.4:-37678736 | MS.gene84088:CDS |
| ATGGTTGTTGTTGTCGTCTT+CGG | 0.398381 | 1.4:+37680547 | None:intergenic |
| CAGATATAGAAGTATCTTGT+AGG | 0.400444 | 1.4:+37675248 | None:intergenic |
| TTGGTTGCTTCACTTGAGGC+TGG | 0.401732 | 1.4:-37678103 | MS.gene84088:CDS |
| TTGATATTGGGTTTGGTCGT+TGG | 0.402387 | 1.4:-37676685 | MS.gene84088:CDS |
| GCCTACACTTGTCCAATTGA+TGG | 0.405204 | 1.4:-37678047 | MS.gene84088:CDS |
| GTCCATGGTTCTAAAAGATT+GGG | 0.405308 | 1.4:+37675289 | None:intergenic |
| CTTGAAAGCGAATCAACATT+AGG | 0.408386 | 1.4:+37680299 | None:intergenic |
| AAGATACTTCTATATCTGTT+AGG | 0.410881 | 1.4:-37675243 | MS.gene84088:CDS |
| AGAGGGAGGAGATGTTTGTA+GGG | 0.411154 | 1.4:+37680510 | None:intergenic |
| AATGATATAAATGCCGAGTT+AGG | 0.414277 | 1.4:-37676046 | MS.gene84088:CDS |
| ATGCCCTCTGTCGCATAATC+GGG | 0.421216 | 1.4:-37679032 | MS.gene84088:CDS |
| TTTGCGACTTGAACTGTGAT+TGG | 0.423041 | 1.4:+37676362 | None:intergenic |
| TTTAATTGCTTCCATTAAGA+AGG | 0.423664 | 1.4:-37674783 | MS.gene84088:intron |
| AAAGCGTTTAAGGATATTGA+TGG | 0.424340 | 1.4:-37678655 | MS.gene84088:CDS |
| CCAACTTTCTGATCTTGCAT+TGG | 0.425309 | 1.4:-37672133 | MS.gene84088:CDS |
| GCAGCTCTTGAGTTTATAGT+TGG | 0.425455 | 1.4:-37677551 | MS.gene84088:CDS |
| CCTTGCAACTTCCATTGTTA+GGG | 0.425717 | 1.4:-37678875 | MS.gene84088:CDS |
| CAGAAGATGATGCCATCAAT+TGG | 0.427958 | 1.4:+37678035 | None:intergenic |
| CACATGGCCGATGCAGTTGC+TGG | 0.429008 | 1.4:-37678925 | MS.gene84088:CDS |
| ACCCGTGCATTCGTGGAATT+GGG | 0.429585 | 1.4:-37679301 | MS.gene84088:CDS |
| TGCTCCAAGTTCCCAACATC+AGG | 0.431005 | 1.4:+37678136 | None:intergenic |
| ACTCGGAGCTGTGGACCAAA+TGG | 0.432565 | 1.4:+37678376 | None:intergenic |
| GAAAGGGTACATTAATGAAA+TGG | 0.432956 | 1.4:-37675082 | MS.gene84088:CDS |
| TGTGCCTGATGTTGGGAACT+TGG | 0.434082 | 1.4:-37678140 | MS.gene84088:CDS |
| GATAATTTGCTAAGTATGTC+GGG | 0.436511 | 1.4:+37674851 | None:intergenic |
| CTAGACGATGCTTCCGGTAC+AGG | 0.442567 | 1.4:+37672823 | None:intergenic |
| GGTCGAATACGTCTTGGTCT+TGG | 0.445031 | 1.4:+37680417 | None:intergenic |
| AGGCAACTTTGGATCAGTAT+AGG | 0.447151 | 1.4:-37678342 | MS.gene84088:CDS |
| GCTGCATACCAAATATTTGC+TGG | 0.447487 | 1.4:+37676521 | None:intergenic |
| TTCATTGCTCAGGTTCTGCT+TGG | 0.447519 | 1.4:+37674829 | None:intergenic |
| TGCTTTATCTGTCCTTTGCA+TGG | 0.448568 | 1.4:-37676756 | MS.gene84088:CDS |
| AAAGACAAGTAACCTTCGTC+AGG | 0.451756 | 1.4:+37679198 | None:intergenic |
| TTTGACGAATTCTTCGAGTT+GGG | 0.451987 | 1.4:+37680481 | None:intergenic |
| AGATGAGAGAATTTCAAATC+TGG | 0.452166 | 1.4:-37675040 | MS.gene84088:CDS |
| CTTGGAGCAGACTAGGGCCT+TGG | 0.453032 | 1.4:-37678122 | MS.gene84088:CDS |
| TGGTCATTGATGCAGACTTT+TGG | 0.454378 | 1.4:-37675515 | MS.gene84088:intron |
| AAATCTCATTGCAAGCTCAT+TGG | 0.454777 | 1.4:-37679256 | MS.gene84088:CDS |
| TGCAGAAAGATTCATTGCTC+AGG | 0.455401 | 1.4:+37674819 | None:intergenic |
| AAGCTATGTAATAGGTTTAG+TGG | 0.456230 | 1.4:-37674656 | MS.gene84088:CDS |
| CTAACCTGTTGTCTTAATCA+TGG | 0.456924 | 1.4:+37672747 | None:intergenic |
| AGATTCTTGGCAGTTTCCAT+TGG | 0.458277 | 1.4:+37677611 | None:intergenic |
| TGGTTTGTGGAACGAGGTTG+CGG | 0.460076 | 1.4:-37678485 | MS.gene84088:CDS |
| CACTAGGAGATTTAGCAGTA+AGG | 0.461782 | 1.4:-37675315 | MS.gene84088:CDS |
| TTCGAGTTGGGAGGAGGAGA+GGG | 0.463748 | 1.4:+37680493 | None:intergenic |
| AGGTGGTGGCTGCAAGTAGC+AGG | 0.466230 | 1.4:-37679332 | MS.gene84088:CDS |
| TCATACTGCCATGAATCAAT+TGG | 0.466297 | 1.4:-37676312 | MS.gene84088:CDS |
| ATGTTGCAGCATAACCCATT+TGG | 0.467413 | 1.4:-37678391 | MS.gene84088:CDS |
| TCAGCTTCTCTTCACAGTTG+TGG | 0.467506 | 1.4:-37675380 | MS.gene84088:CDS |
| CTTTGACGAATTCTTCGAGT+TGG | 0.469018 | 1.4:+37680480 | None:intergenic |
| GATTATGTCAAAGACACTAT+TGG | 0.471543 | 1.4:-37678829 | MS.gene84088:CDS |
| TTGGGAACTTGGAGCAGACT+AGG | 0.473783 | 1.4:-37678129 | MS.gene84088:CDS |
| GGATAATTTGCTAAGTATGT+CGG | 0.473998 | 1.4:+37674850 | None:intergenic |
| GATTCTTGGCAGTTTCCATT+GGG | 0.476024 | 1.4:+37677612 | None:intergenic |
| ATTCTTGTTCCTCACTTTGG+TGG | 0.478327 | 1.4:-37678733 | MS.gene84088:CDS |
| ACATACCTTAGGAACATTGT+TGG | 0.479351 | 1.4:+37680160 | None:intergenic |
| GAGGTTGCGGAAGTTGCTGC+TGG | 0.479961 | 1.4:-37678472 | MS.gene84088:CDS |
| ATTAGACTTCGAGTGATCTT+CGG | 0.483828 | 1.4:+37674107 | None:intergenic |
| CTTGTCAGAGGATTCTGTTA+TGG | 0.485956 | 1.4:-37674416 | MS.gene84088:CDS |
| ACTCAGTTTCGATTGGTTTG+TGG | 0.486591 | 1.4:-37678498 | MS.gene84088:CDS |
| CCACATGGAAAAGAAGGAAC+AGG | 0.486777 | 1.4:-37674205 | MS.gene84088:CDS |
| GCTCCGAGTAGCTTCATTTG+AGG | 0.488817 | 1.4:-37678362 | MS.gene84088:CDS |
| AAGACATCAACTGGTGTGCT+TGG | 0.489686 | 1.4:-37676728 | MS.gene84088:CDS |
| AGTTCTGTTTATAAGGATTG+TGG | 0.492770 | 1.4:-37676416 | MS.gene84088:CDS |
| AGATGACAAGGCAAAATTGT+TGG | 0.492878 | 1.4:-37676603 | MS.gene84088:CDS |
| GGCCTTGGTTGCTTCACTTG+AGG | 0.492951 | 1.4:-37678107 | MS.gene84088:CDS |
| TAAGTTCCACATGGAAAAGA+AGG | 0.493192 | 1.4:-37674211 | MS.gene84088:CDS |
| TATCATTACCATTCTGCATA+GGG | 0.493701 | 1.4:+37678167 | None:intergenic |
| AGAAGCAACCCGTGCATTCG+TGG | 0.493917 | 1.4:-37679308 | MS.gene84088:CDS |
| AGCAATGGCACAGCATCAAC+CGG | 0.493997 | 1.4:-37676206 | MS.gene84088:CDS |
| AGTACTACAGGACAGACAAA+TGG | 0.495266 | 1.4:-37674693 | MS.gene84088:intron |
| GAGATTCTCTAAATGTATAG+AGG | 0.495307 | 1.4:-37678077 | MS.gene84088:CDS |
| AATTGTTTCTGGCGGTTCAA+AGG | 0.497543 | 1.4:-37675966 | MS.gene84088:CDS |
| CTCTGACAAGGCATGTTCAT+AGG | 0.498818 | 1.4:+37674429 | None:intergenic |
| ATCAAGTTCTAAACCTGTAC+CGG | 0.500937 | 1.4:-37672836 | MS.gene84088:CDS |
| GAAACTTGCAAAAGAGAGAA+AGG | 0.502003 | 1.4:-37676252 | MS.gene84088:CDS |
| CCAATGCAAGATCAGAAAGT+TGG | 0.505905 | 1.4:+37672133 | None:intergenic |
| CTCGGAGCTGTGGACCAAAT+GGG | 0.508193 | 1.4:+37678377 | None:intergenic |
| TTGTCTTAATCATGGGTGAC+TGG | 0.509603 | 1.4:+37672755 | None:intergenic |
| CACTAGACTGTGTCGTGTAA+TGG | 0.511000 | 1.4:+37678992 | None:intergenic |
| AGTCGTGTGCTTCAGGTGTG+GGG | 0.511122 | 1.4:-37678538 | MS.gene84088:CDS |
| CGGAGGGTGAATCTTGTTCG+AGG | 0.511388 | 1.4:+37680567 | None:intergenic |
| CGTGTTTGCTCTTTGGTTCG+CGG | 0.511529 | 1.4:-37680395 | MS.gene84088:CDS |
| TCACCCATGATTAAGACAAC+AGG | 0.511923 | 1.4:-37672751 | MS.gene84088:intron |
| TCAAAGGACAAGAATTTGGT+TGG | 0.512463 | 1.4:-37675950 | MS.gene84088:CDS |
| AATGCTCTTGTAGCTGTGCT+GGG | 0.514061 | 1.4:-37678691 | MS.gene84088:CDS |
| CTATCATTACCATTCTGCAT+AGG | 0.516239 | 1.4:+37678166 | None:intergenic |
| CCCTAACAATGGAAGTTGCA+AGG | 0.516451 | 1.4:+37678875 | None:intergenic |
| CTTTCAGTACAATATACATA+AGG | 0.517800 | 1.4:-37677640 | MS.gene84088:CDS |
| GGAAGTTGCTGCTGGGAGAT+TGG | 0.517813 | 1.4:-37678464 | MS.gene84088:CDS |
| GTCGTGTGCTTCAGGTGTGG+GGG | 0.518289 | 1.4:-37678537 | MS.gene84088:CDS |
| TAATGTTGATTCGCTTTCAA+GGG | 0.519008 | 1.4:-37680297 | MS.gene84088:CDS |
| CAAGCTGTCCTTGCCAGTAA+AGG | 0.519378 | 1.4:+37676650 | None:intergenic |
| GAATTCTTCGAGTTGGGAGG+AGG | 0.521064 | 1.4:+37680487 | None:intergenic |
| GATAGTAGTGTGCCTGATGT+TGG | 0.523002 | 1.4:-37678148 | MS.gene84088:CDS |
| GTGCGAGGGAAGACGAAGGT+TGG | 0.523145 | 1.4:+37680599 | None:intergenic |
| ATGGTTGAAAAGACATCAAC+TGG | 0.523260 | 1.4:-37676737 | MS.gene84088:CDS |
| GAAGACGAAGGTTGGAGCCA+TGG | 0.523783 | 1.4:+37680607 | None:intergenic |
| TTCGGCACCAGCAACTGCAT+CGG | 0.524585 | 1.4:+37678918 | None:intergenic |
| CTCCCAATTCCACGAATGCA+CGG | 0.524686 | 1.4:+37679299 | None:intergenic |
| ATACAATTCTCTTGTTGATG+AGG | 0.528194 | 1.4:-37677997 | MS.gene84088:CDS |
| ACCACGGCTTTGCTCTGCGG+TGG | 0.529418 | 1.4:+37676778 | None:intergenic |
| CTGCTATGATTTCTGGAGTA+GGG | 0.530319 | 1.4:+37676462 | None:intergenic |
| ACGCACTAAACAAGCTATGT+TGG | 0.530440 | 1.4:-37678605 | MS.gene84088:CDS |
| CTTCGAGTTGGGAGGAGGAG+AGG | 0.531303 | 1.4:+37680492 | None:intergenic |
| ATCAACAGAAGATTGACAGC+AGG | 0.531311 | 1.4:-37674155 | MS.gene84088:CDS |
| GCTGCTATGATTTCTGGAGT+AGG | 0.532010 | 1.4:+37676461 | None:intergenic |
| TAAATCAATCTTTGAAGCAG+TGG | 0.533578 | 1.4:-37677669 | MS.gene84088:CDS |
| TCATTTCTCTATCAGGTGAA+AGG | 0.533590 | 1.4:-37675099 | MS.gene84088:intron |
| GTAATGGTACTTTGTGGAGC+AGG | 0.535079 | 1.4:+37679008 | None:intergenic |
| CAGAAGATTGACAGCAGGGA+AGG | 0.535424 | 1.4:-37674150 | MS.gene84088:CDS |
| CACTATTGGTGCTGAAAATG+TGG | 0.539347 | 1.4:-37678815 | MS.gene84088:CDS |
| CATTTCTCTATCAGGTGAAA+GGG | 0.540050 | 1.4:-37675098 | MS.gene84088:intron |
| AGAGAGCTTGAGCCTTCAGA+AGG | 0.543604 | 1.4:-37678310 | MS.gene84088:CDS |
| CCTTCCAATTTCCCTAACAA+TGG | 0.544985 | 1.4:+37678864 | None:intergenic |
| GGAACTTAAAACTTACATTG+AGG | 0.545490 | 1.4:-37674253 | MS.gene84088:CDS |
| AGCTGCTAGATCTCCTGTGT+TGG | 0.547805 | 1.4:+37677568 | None:intergenic |
| TAACCTGTTGTCTTAATCAT+GGG | 0.550438 | 1.4:+37672748 | None:intergenic |
| TCGTGTGCTTCAGGTGTGGG+GGG | 0.550787 | 1.4:-37678536 | MS.gene84088:CDS |
| GTAATTGATACAAGCACTGA+AGG | 0.551040 | 1.4:-37672886 | MS.gene84088:CDS |
| GAGGAACACTCAGTTTCGAT+TGG | 0.551052 | 1.4:-37678505 | MS.gene84088:CDS |
| TATAGAAGTATCTTGTAGGC+GGG | 0.553527 | 1.4:+37675252 | None:intergenic |
| GATGCAGAGGATTTCTCTGT+CGG | 0.554207 | 1.4:+37680439 | None:intergenic |
| TCATTGTCAGAACCTTCTGA+AGG | 0.554412 | 1.4:+37678298 | None:intergenic |
| AAGCGAGTACGAAGAACATT+CGG | 0.554581 | 1.4:-37678630 | MS.gene84088:CDS |
| ATTGGGAGCCACAGAGAGCT+CGG | 0.555565 | 1.4:-37679284 | MS.gene84088:CDS |
| GGAGTCGTGTGCTTCAGGTG+TGG | 0.555573 | 1.4:-37678540 | MS.gene84088:CDS |
| GGGATTGCATCTTCTTCCTG+TGG | 0.555751 | 1.4:+37678187 | None:intergenic |
| AGAAAAGAGCAACTCGGTCA+AGG | 0.555925 | 1.4:-37672364 | MS.gene84088:CDS |
| ATTGATTGAATCAGATCAAG+TGG | 0.558340 | 1.4:-37672788 | MS.gene84088:CDS |
| TGATTGCACCTTCTGTGTAC+CGG | 0.558744 | 1.4:+37676187 | None:intergenic |
| CATACTAAATGACATGATGA+AGG | 0.560185 | 1.4:-37675191 | MS.gene84088:intron |
| GACGAATTCTTCGAGTTGGG+AGG | 0.561426 | 1.4:+37680484 | None:intergenic |
| TGCATGAAAACATACTGTGC+TGG | 0.562212 | 1.4:+37677499 | None:intergenic |
| GGACAGACAAATGGAAGCAC+TGG | 0.562649 | 1.4:-37674684 | MS.gene84088:CDS |
| TCCCAATTCCACGAATGCAC+GGG | 0.562709 | 1.4:+37679300 | None:intergenic |
| TTGAAGCTGTTGAGCAGGAG+CGG | 0.563892 | 1.4:-37678237 | MS.gene84088:CDS |
| ATAGTAGTGTGCCTGATGTT+GGG | 0.563989 | 1.4:-37678147 | MS.gene84088:CDS |
| GATGCAATCCCTATGCAGAA+TGG | 0.565533 | 1.4:-37678175 | MS.gene84088:CDS |
| TGAGTTTATAGTTGGCACAC+TGG | 0.565695 | 1.4:-37677543 | MS.gene84088:CDS |
| GTTGTTGTTGTCGTCTTCGG+AGG | 0.565733 | 1.4:+37680550 | None:intergenic |
| AGTTGCTGCTGGGAGATTGG+AGG | 0.565849 | 1.4:-37678461 | MS.gene84088:CDS |
| TTCGATTGGTTTGTGGAACG+AGG | 0.566074 | 1.4:-37678491 | MS.gene84088:CDS |
| AAGTTGATCCTTTACTGGCA+AGG | 0.566127 | 1.4:-37676658 | MS.gene84088:CDS |
| AATAGGTTTAGTGGTGTCAC+AGG | 0.567469 | 1.4:-37674647 | MS.gene84088:intron |
| GCCATCAATTGGACAAGTGT+AGG | 0.570206 | 1.4:+37678046 | None:intergenic |
| AAAGCACTAGACGATGCTTC+CGG | 0.575309 | 1.4:+37672817 | None:intergenic |
| CAGACAAATGGAAGCACTGG+TGG | 0.578868 | 1.4:-37674681 | MS.gene84088:CDS |
| AGATTCCAACAATGTTCCTA+AGG | 0.579933 | 1.4:-37680165 | MS.gene84088:intron |
| GTTGGCACACTGGTCTCTAA+GGG | 0.581531 | 1.4:-37677533 | MS.gene84088:CDS |
| GCCGAAAAGAAGTATTCAGA+TGG | 0.583200 | 1.4:-37678901 | MS.gene84088:CDS |
| TCTCCGAAAGATGTTGCCCC+TGG | 0.583816 | 1.4:-37677939 | MS.gene84088:intron |
| TGGGAACTTGGAGCAGACTA+GGG | 0.584083 | 1.4:-37678128 | MS.gene84088:CDS |
| GGCCCCGATTATGCGACAGA+GGG | 0.586679 | 1.4:+37679029 | None:intergenic |
| CTTGTGAATAAGATGCATGA+TGG | 0.587713 | 1.4:+37678966 | None:intergenic |
| GAGTTGGGAGGAGGAGAGGG+AGG | 0.588726 | 1.4:+37680496 | None:intergenic |
| CAGAAAGCCTCTCGATAGCA+AGG | 0.588973 | 1.4:+37676627 | None:intergenic |
| TCTAATTGCACTATTGCACT+AGG | 0.589127 | 1.4:-37675331 | MS.gene84088:CDS |
| CGTCTTGGTCTTGGATGCAG+AGG | 0.590940 | 1.4:+37680426 | None:intergenic |
| ATCCTTATAAACAGAACTGA+GGG | 0.592079 | 1.4:+37676421 | None:intergenic |
| CCATTGTTAGGGAAATTGGA+AGG | 0.592278 | 1.4:-37678864 | MS.gene84088:CDS |
| TTGTTGTTGTCGTCTTCGGA+GGG | 0.596039 | 1.4:+37680551 | None:intergenic |
| CGCGAACCAAAGAGCAAACA+CGG | 0.597275 | 1.4:+37680396 | None:intergenic |
| CTCTACAGATGTGAGACAGT+GGG | 0.597510 | 1.4:-37674527 | MS.gene84088:intron |
| TGTCGTGTAATGGTACTTTG+TGG | 0.598438 | 1.4:+37679002 | None:intergenic |
| TTGCCTCAAATGAAGCTACT+CGG | 0.602139 | 1.4:+37678359 | None:intergenic |
| AGCCTCAAGTGAAGCAACCA+AGG | 0.602706 | 1.4:+37678105 | None:intergenic |
| AAGAGAGAAAGGACATTGAG+AGG | 0.603969 | 1.4:-37676241 | MS.gene84088:CDS |
| AGGTTGCGGAAGTTGCTGCT+GGG | 0.606891 | 1.4:-37678471 | MS.gene84088:CDS |
| AAATTGATATCAACTAACAT+TGG | 0.608940 | 1.4:-37678757 | MS.gene84088:CDS |
| AAAATCTAACGTGGATGGTG+AGG | 0.611984 | 1.4:-37678275 | MS.gene84088:CDS |
| AGCATCAACCGGTACACAGA+AGG | 0.612351 | 1.4:-37676195 | MS.gene84088:intron |
| CATAACAGAATCCTCTGACA+AGG | 0.612594 | 1.4:+37674417 | None:intergenic |
| CTATGAACATGCCTTGTCAG+AGG | 0.613866 | 1.4:-37674428 | MS.gene84088:CDS |
| CAGCTTGCCTTGCTATCGAG+AGG | 0.614048 | 1.4:-37676634 | MS.gene84088:CDS |
| GACTGATACATTCATGCCAC+AGG | 0.615836 | 1.4:-37678203 | MS.gene84088:CDS |
| TCTGTTTATAAGGATTGTGG+TGG | 0.617980 | 1.4:-37676413 | MS.gene84088:CDS |
| CTTGCAACTGATTCCAACAC+AGG | 0.619910 | 1.4:-37677581 | MS.gene84088:CDS |
| GAAAAGGAAATTGTTTCTGG+CGG | 0.619917 | 1.4:-37675974 | MS.gene84088:CDS |
| AATGAAGCTACTCGGAGCTG+TGG | 0.620295 | 1.4:+37678367 | None:intergenic |
| TTGGACAAGTGTAGGCATTG+TGG | 0.620424 | 1.4:+37678054 | None:intergenic |
| TCGAGGTGTTGAAGAGTGCG+AGG | 0.621611 | 1.4:+37680584 | None:intergenic |
| AGAGGCTGCAAATCCTAACT+CGG | 0.622462 | 1.4:+37676033 | None:intergenic |
| TCAACAGAAGATTGACAGCA+GGG | 0.622646 | 1.4:-37674154 | MS.gene84088:CDS |
| CAACTCGAAGAATTCGTCAA+AGG | 0.623065 | 1.4:-37680479 | MS.gene84088:CDS |
| GAAGAACAGCGAGATTAGAA+CGG | 0.624036 | 1.4:+37680324 | None:intergenic |
| AAACACGGTCGAATACGTCT+TGG | 0.624885 | 1.4:+37680411 | None:intergenic |
| AGCTATCATTTACTGAAAAG+GGG | 0.626387 | 1.4:-37674480 | MS.gene84088:CDS |
| GGTTCATCTGACCCTGACGA+AGG | 0.627950 | 1.4:-37679210 | MS.gene84088:CDS |
| GTGCAATAGTGCAATTAGAA+CGG | 0.629695 | 1.4:+37675335 | None:intergenic |
| ATATAGAAGTATCTTGTAGG+CGG | 0.631163 | 1.4:+37675251 | None:intergenic |
| GTTAGGATTTGCAGCCTCTG+AGG | 0.631609 | 1.4:-37676029 | MS.gene84088:CDS |
| AGCACCACGGCTTTGCTCTG+CGG | 0.632576 | 1.4:+37676775 | None:intergenic |
| AGGCCCCGATTATGCGACAG+AGG | 0.637694 | 1.4:+37679028 | None:intergenic |
| TGCCCTCTGTCGCATAATCG+GGG | 0.638428 | 1.4:-37679031 | MS.gene84088:CDS |
| GTTGGAATCTTTCAAAAGCG+CGG | 0.642116 | 1.4:+37679062 | None:intergenic |
| CAGCAACTGCATCGGCCATG+TGG | 0.647912 | 1.4:+37678926 | None:intergenic |
| CGAGGTGTTGAAGAGTGCGA+GGG | 0.649241 | 1.4:+37680585 | None:intergenic |
| AATCCTTATAAACAGAACTG+AGG | 0.650673 | 1.4:+37676420 | None:intergenic |
| ACCACCGCAGAGCAAAGCCG+TGG | 0.651933 | 1.4:-37676779 | MS.gene84088:CDS |
| TAAGACTCTCCACCAAAGTG+AGG | 0.651984 | 1.4:+37678724 | None:intergenic |
| TATATCTGTTAGGAAGAATG+CGG | 0.652410 | 1.4:-37675233 | MS.gene84088:CDS |
| AGGCAGAGTACAGACAGCAA+TGG | 0.655449 | 1.4:-37676221 | MS.gene84088:CDS |
| ATGCTCTTGTAGCTGTGCTG+GGG | 0.660356 | 1.4:-37678690 | MS.gene84088:CDS |
| TTTAGTATCCGAGCTCTCTG+TGG | 0.661363 | 1.4:+37679276 | None:intergenic |
| GGGATGTTTCTGCTTACACA+AGG | 0.662146 | 1.4:-37678561 | MS.gene84088:CDS |
| TCTCTACAGATGTGAGACAG+TGG | 0.663665 | 1.4:-37674528 | MS.gene84088:intron |
| GAGGCTTTCTGAAGATGACA+AGG | 0.668391 | 1.4:-37676615 | MS.gene84088:CDS |
| TAATTGATACAAGCACTGAA+GGG | 0.673173 | 1.4:-37672885 | MS.gene84088:CDS |
| AAGACAAGTAACCTTCGTCA+GGG | 0.675567 | 1.4:+37679199 | None:intergenic |
| AAGAGTGCGAGGGAAGACGA+AGG | 0.678373 | 1.4:+37680595 | None:intergenic |
| ATCAAGTGCAGCATCCTCAG+AGG | 0.679232 | 1.4:+37676015 | None:intergenic |
| TAAGCTGAATAAGTTCCACA+TGG | 0.680330 | 1.4:-37674220 | MS.gene84088:CDS |
| TCACCAAGAAAAGAGCAACT+CGG | 0.693953 | 1.4:-37672370 | MS.gene84088:CDS |
| ACTATTGGTGCTGAAAATGT+GGG | 0.694854 | 1.4:-37678814 | MS.gene84088:CDS |
| AAAGAGCAACTCGGTCAAGG+AGG | 0.698052 | 1.4:-37672361 | MS.gene84088:intron |
| CATTACGATGAGAAGCAACA+CGG | 0.700562 | 1.4:+37680234 | None:intergenic |
| GACCAATTATAGGAGCTCAA+CGG | 0.711285 | 1.4:-37672442 | MS.gene84088:intron |
| TAGAACGGAGACTCTCAACA+AGG | 0.737460 | 1.4:+37680339 | None:intergenic |
| AAAGGACAGATAAAGCACCA+CGG | 0.791205 | 1.4:+37676762 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 37672062 | 37680627 | 37672062 | ID=MS.gene84088 |
| chr1.4 | mRNA | 37672062 | 37680627 | 37672062 | ID=MS.gene84088.t1;Parent=MS.gene84088 |
| chr1.4 | exon | 37680166 | 37680627 | 37680166 | ID=MS.gene84088.t1.exon1;Parent=MS.gene84088.t1 |
| chr1.4 | CDS | 37680166 | 37680627 | 37680166 | ID=cds.MS.gene84088.t1;Parent=MS.gene84088.t1 |
| chr1.4 | exon | 37679189 | 37679352 | 37679189 | ID=MS.gene84088.t1.exon2;Parent=MS.gene84088.t1 |
| chr1.4 | CDS | 37679189 | 37679352 | 37679189 | ID=cds.MS.gene84088.t1;Parent=MS.gene84088.t1 |
| chr1.4 | exon | 37677940 | 37679110 | 37677940 | ID=MS.gene84088.t1.exon3;Parent=MS.gene84088.t1 |
| chr1.4 | CDS | 37677940 | 37679110 | 37677940 | ID=cds.MS.gene84088.t1;Parent=MS.gene84088.t1 |
| chr1.4 | exon | 37677514 | 37677705 | 37677514 | ID=MS.gene84088.t1.exon4;Parent=MS.gene84088.t1 |
| chr1.4 | CDS | 37677514 | 37677705 | 37677514 | ID=cds.MS.gene84088.t1;Parent=MS.gene84088.t1 |
| chr1.4 | exon | 37676196 | 37676843 | 37676196 | ID=MS.gene84088.t1.exon5;Parent=MS.gene84088.t1 |
| chr1.4 | CDS | 37676196 | 37676843 | 37676196 | ID=cds.MS.gene84088.t1;Parent=MS.gene84088.t1 |
| chr1.4 | exon | 37675895 | 37676071 | 37675895 | ID=MS.gene84088.t1.exon6;Parent=MS.gene84088.t1 |
| chr1.4 | CDS | 37675895 | 37676071 | 37675895 | ID=cds.MS.gene84088.t1;Parent=MS.gene84088.t1 |
| chr1.4 | exon | 37675516 | 37675583 | 37675516 | ID=MS.gene84088.t1.exon7;Parent=MS.gene84088.t1 |
| chr1.4 | CDS | 37675516 | 37675583 | 37675516 | ID=cds.MS.gene84088.t1;Parent=MS.gene84088.t1 |
| chr1.4 | exon | 37675192 | 37675414 | 37675192 | ID=MS.gene84088.t1.exon8;Parent=MS.gene84088.t1 |
| chr1.4 | CDS | 37675192 | 37675414 | 37675192 | ID=cds.MS.gene84088.t1;Parent=MS.gene84088.t1 |
| chr1.4 | exon | 37675007 | 37675106 | 37675007 | ID=MS.gene84088.t1.exon9;Parent=MS.gene84088.t1 |
| chr1.4 | CDS | 37675007 | 37675106 | 37675007 | ID=cds.MS.gene84088.t1;Parent=MS.gene84088.t1 |
| chr1.4 | exon | 37674784 | 37674899 | 37674784 | ID=MS.gene84088.t1.exon10;Parent=MS.gene84088.t1 |
| chr1.4 | CDS | 37674784 | 37674899 | 37674784 | ID=cds.MS.gene84088.t1;Parent=MS.gene84088.t1 |
| chr1.4 | exon | 37674648 | 37674705 | 37674648 | ID=MS.gene84088.t1.exon11;Parent=MS.gene84088.t1 |
| chr1.4 | CDS | 37674648 | 37674705 | 37674648 | ID=cds.MS.gene84088.t1;Parent=MS.gene84088.t1 |
| chr1.4 | exon | 37674390 | 37674541 | 37674390 | ID=MS.gene84088.t1.exon12;Parent=MS.gene84088.t1 |
| chr1.4 | CDS | 37674390 | 37674541 | 37674390 | ID=cds.MS.gene84088.t1;Parent=MS.gene84088.t1 |
| chr1.4 | exon | 37674097 | 37674295 | 37674097 | ID=MS.gene84088.t1.exon13;Parent=MS.gene84088.t1 |
| chr1.4 | CDS | 37674097 | 37674295 | 37674097 | ID=cds.MS.gene84088.t1;Parent=MS.gene84088.t1 |
| chr1.4 | exon | 37672752 | 37672925 | 37672752 | ID=MS.gene84088.t1.exon14;Parent=MS.gene84088.t1 |
| chr1.4 | CDS | 37672752 | 37672925 | 37672752 | ID=cds.MS.gene84088.t1;Parent=MS.gene84088.t1 |
| chr1.4 | exon | 37672362 | 37672452 | 37672362 | ID=MS.gene84088.t1.exon15;Parent=MS.gene84088.t1 |
| chr1.4 | CDS | 37672362 | 37672452 | 37672362 | ID=cds.MS.gene84088.t1;Parent=MS.gene84088.t1 |
| chr1.4 | exon | 37672062 | 37672158 | 37672062 | ID=MS.gene84088.t1.exon16;Parent=MS.gene84088.t1 |
| chr1.4 | CDS | 37672062 | 37672158 | 37672062 | ID=cds.MS.gene84088.t1;Parent=MS.gene84088.t1 |
| Gene Sequence |
| Protein sequence |
