AlfalfaGEDB | MS.gene61618

M. sativa cultivar XinJiangDaYe / MS.gene61618

KEGG: K06676
GO: GO:0000796 GO:0005575 GO:0006323 GO:0006996 GO:0007076 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0030261 GO:0032991 GO:0044815 GO:0051276 GO:0071103 GO:0071840 GO:1903047
PFAM: PF05786.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61618.t1	XP_013455688.1	93.8	666	9	1	1	634	1	666	0.00E+00	1231.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61618.t1	Q564K3	56.3	675	242	11	1	627	1	670	5.3e-193	675.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61618.t1	A0A072UIX9	93.8	666	9	1	1	634	1	666	0.0e+00	1231.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049251	MS.gene61618	0.837054	6.52E-57	-1.69E-46
MS.gene050874	MS.gene61618	0.845779	3.28E-59	-1.69E-46
MS.gene050875	MS.gene61618	0.856655	2.78E-62	-1.69E-46
MS.gene05124	MS.gene61618	0.819906	9.08E-53	-1.69E-46
MS.gene051896	MS.gene61618	0.805841	1.10E-49	-1.69E-46
MS.gene051914	MS.gene61618	0.890802	7.09E-74	-1.69E-46
MS.gene052169	MS.gene61618	0.80621	9.19E-50	-1.69E-46
MS.gene052308	MS.gene61618	0.876161	1.74E-68	-1.69E-46
MS.gene052367	MS.gene61618	0.831824	1.34E-55	-1.69E-46
MS.gene053173	MS.gene61618	0.878432	2.82E-69	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene016667	MS.gene61618	PPI
MS.gene017879	MS.gene61618	PPI
MS.gene024068	MS.gene61618	PPI
MS.gene033508	MS.gene61618	PPI
MS.gene040722	MS.gene61618	PPI
MS.gene056169	MS.gene61618	PPI
MS.gene066477	MS.gene61618	PPI
MS.gene073698	MS.gene61618	PPI
MS.gene23837	MS.gene61618	PPI
MS.gene39049	MS.gene61618	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61618.t1	MTR_4g050060	93.844	666	9	1	1	634	1	666	0.0	1271
MS.gene61618.t1	MTR_2g087880	61.934	662	211	7	1	628	1	655	0.0	801

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61618.t1	AT2G32590	54.896	674	253	11	1	627	1	670	0.0	672

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Find 162 sgRNAs with CRISPR-Local

Find 323 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGACAAGAAGGAAGC+AGG	0.532831	4.1:+47758129	MS.gene61618:CDS
AAACCGGGAGATTCTTGCGG+CGG	0.663125	4.1:-47756282	None:intergenic
AAGTGCTTGCGGTGGTGATG+AGG	0.625564	4.1:+47759946	MS.gene61618:CDS
AAGTGTTAAAAGTTACTCTT+TGG	0.319358	4.1:+47760263	MS.gene61618:CDS
AAGTTTCCCTAGTTATCCTC+AGG	0.486215	4.1:+47758962	MS.gene61618:CDS
AATAATCTCGGTGTATATGG+TGG	0.660208	4.1:+47758483	MS.gene61618:CDS
AATAGCTTGACAAGTTCCTC+TGG	0.524415	4.1:-47759559	None:intergenic
AATATGACAATGGCGCGACC+TGG	0.541035	4.1:+47758880	MS.gene61618:CDS
AATGTCACTGATGTTTGCAG+CGG	0.674186	4.1:-47760618	None:intergenic
AATGTCAGACACTACACTGG+AGG	0.649854	4.1:+47758094	MS.gene61618:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAACTACCTTCACATC+CGG	-	chr4.1:47759592-47759611	None:intergenic	30.0%
AAAGAGAATCAGAATATGCT+AGG	-	chr4.1:47757838-47757857	None:intergenic	30.0%
AACAGACATAGAGGTTTATA+TGG	-	chr4.1:47759003-47759022	None:intergenic	30.0%
AATATGCTAGGCTTAATAAG+AGG	-	chr4.1:47757826-47757845	None:intergenic	30.0%
AATGTTGAAAATGGACAAGA+AGG	+	chr4.1:47758122-47758141	MS.gene61618:CDS	30.0%
AATTTCTTGGTTCAAGTGTT+TGG	+	chr4.1:47756613-47756632	MS.gene61618:intron	30.0%
ACAAGATAATATTGATGTGG+TGG	+	chr4.1:47757162-47757181	MS.gene61618:intron	30.0%
AGATAAAAAGGTCAATAGTC+TGG	+	chr4.1:47758160-47758179	MS.gene61618:intron	30.0%
ATAAACCTCTATGTCTGTTT+AGG	+	chr4.1:47759004-47759023	MS.gene61618:intron	30.0%
ATATGCTAGGCTTAATAAGA+GGG	-	chr4.1:47757825-47757844	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	47756142	47760763	47756142	ID=MS.gene61618
chr4.1	mRNA	47756142	47760763	47756142	ID=MS.gene61618.t1;Parent=MS.gene61618
chr4.1	exon	47756142	47756300	47756142	ID=MS.gene61618.t1.exon1;Parent=MS.gene61618.t1
chr4.1	CDS	47756142	47756300	47756142	ID=cds.MS.gene61618.t1;Parent=MS.gene61618.t1
chr4.1	exon	47756482	47756583	47756482	ID=MS.gene61618.t1.exon2;Parent=MS.gene61618.t1
chr4.1	CDS	47756482	47756583	47756482	ID=cds.MS.gene61618.t1;Parent=MS.gene61618.t1
chr4.1	exon	47757691	47757808	47757691	ID=MS.gene61618.t1.exon3;Parent=MS.gene61618.t1
chr4.1	CDS	47757691	47757808	47757691	ID=cds.MS.gene61618.t1;Parent=MS.gene61618.t1
chr4.1	exon	47758102	47758169	47758102	ID=MS.gene61618.t1.exon4;Parent=MS.gene61618.t1
chr4.1	CDS	47758102	47758169	47758102	ID=cds.MS.gene61618.t1;Parent=MS.gene61618.t1
chr4.1	exon	47758249	47758309	47758249	ID=MS.gene61618.t1.exon5;Parent=MS.gene61618.t1
chr4.1	CDS	47758249	47758309	47758249	ID=cds.MS.gene61618.t1;Parent=MS.gene61618.t1
chr4.1	exon	47758406	47758606	47758406	ID=MS.gene61618.t1.exon6;Parent=MS.gene61618.t1
chr4.1	CDS	47758406	47758606	47758406	ID=cds.MS.gene61618.t1;Parent=MS.gene61618.t1
chr4.1	exon	47758697	47758983	47758697	ID=MS.gene61618.t1.exon7;Parent=MS.gene61618.t1
chr4.1	CDS	47758697	47758983	47758697	ID=cds.MS.gene61618.t1;Parent=MS.gene61618.t1
chr4.1	exon	47759107	47759251	47759107	ID=MS.gene61618.t1.exon8;Parent=MS.gene61618.t1
chr4.1	CDS	47759107	47759251	47759107	ID=cds.MS.gene61618.t1;Parent=MS.gene61618.t1
chr4.1	exon	47759344	47759600	47759344	ID=MS.gene61618.t1.exon9;Parent=MS.gene61618.t1
chr4.1	CDS	47759344	47759600	47759344	ID=cds.MS.gene61618.t1;Parent=MS.gene61618.t1
chr4.1	exon	47759730	47759760	47759730	ID=MS.gene61618.t1.exon10;Parent=MS.gene61618.t1
chr4.1	CDS	47759730	47759760	47759730	ID=cds.MS.gene61618.t1;Parent=MS.gene61618.t1
chr4.1	exon	47759885	47760039	47759885	ID=MS.gene61618.t1.exon11;Parent=MS.gene61618.t1
chr4.1	CDS	47759885	47760039	47759885	ID=cds.MS.gene61618.t1;Parent=MS.gene61618.t1
chr4.1	exon	47760211	47760324	47760211	ID=MS.gene61618.t1.exon12;Parent=MS.gene61618.t1
chr4.1	CDS	47760211	47760324	47760211	ID=cds.MS.gene61618.t1;Parent=MS.gene61618.t1
chr4.1	exon	47760557	47760763	47760557	ID=MS.gene61618.t1.exon13;Parent=MS.gene61618.t1
chr4.1	CDS	47760557	47760763	47760557	ID=cds.MS.gene61618.t1;Parent=MS.gene61618.t1

Gene Sequence

>MS.gene61618

ATGGCGGAAACCCTTAGCCCTACCAAACTCCGTCTCCCAGTTGCCGCACGCATCCAATCTCCCACCAGCCCCTTCATCTTAGGTTCCAATGACGACCAGCTCGAACGCGCTCAAGCACGTGCAGCACGCGCCGCTGCTATCCGCCGCAAGAATCTCCCGGTTTCTCAATCTCTCGACGCCGACTCCGATCCGTGTCTTAACAAACAGCAGATCTTCGATTTGTTCCAGAATTGTATAAAGCTCGCCAGCGAAAATGTAAACAAAATTTGAAATTGAAATTTCTGTTTTAATTTTTAATTTTATTATTTAATTTTTTGATTTTGGGAAAATTTTTGTGCAGAAAATTAATCAGAAAAATACTTGGGAGTTGAACTTGATTGATCATCTTACTGATATTATTAAGGCTGAAGAAGAGAATGATACTGAGACTAATTTTCAGAAGGTATGTATGCTTAAAATTCGCGTTGTTCTAATTTCTTGGTTCAAGTGTTTGGATATGATTTTTGGTTTTATAATTTAAGAGATTAGATGTTTGCTGTAAAATTTTCTTATAATGTGGGAGGTCATGTGCAATCATTCCAAATCTACTAGATTAGAGGCAATTGAATATTAGATTATGGGTTGCATTTATGAACCGACAAGCTATGAAGCACTGACATAGATACGAACACTGGAAACTGACATGTTGATAACAATTTAAGAAAATGTAAGTGATTGAACATGTATCGGTGTCGTGTTAGACACCAACAGAACTTCAATCTGAAGTTTTGGTGCTATATAGCTTTTTAGGGTAAGCCTATGCTGTCAATAGTGCTGCTATAGTGGAATAGCGTAGCAGAGGTAGGGTTCGACGCAGCGCTATCTCCCTGCAAGCTGCCTCAACAGTGGTGGTTTTCGTGGCCGTGAATTGCGGCCATCCCACTATCCGCTATAGAAATTTAGACCCACTACAGCTGTGCTTAATGGAGATGGAGATGAGGAGTTGGAGATGGAAAAACAAGAGTTTGAATCAAGTGATTAACAAGATAATATTGATGTGGTGGAACTTAGAAGTGAAGATGAGGCCGACGCAGACGCGGAAACATGATTTTGATTACTTTTAAAACTTGATTTTGATGGCTTGTCATTTTGTTTAATTTTAGAACTGGATTTTGTCATTTTCAATGCTATGCCATTTTAATTACATTCAGAACTTATTTTGATCAGAGATGACAAAGTTGATTAGAATTATTATGTACGATTTTCCCTTTAATTTTTGTATTTTTGAGTATTTATGTATCTTGTTGGAATTTATATTTAGTTTGTATATTGTTTTTTAGTCTTCACAATAGCGGTCATCTCACTATAAAGTAAACTGTTTTTTAGTCTTCGCAATAGCGGTCATCTCACTATAAACTAAACTGTTTTTTTTAGTCTTCACAATAGCGGTCATCCCACTATAGCATTTTTGGGTGCTATTTGGGATTAACAACTTAGGGGTGAAGGTGAACAGACAAAGTTATATACGTGTATACTTTAGGTAGTTTCATTAAAATTTTATTTTGGGCAGGCAAGCTGCACTCTTGAGGCCGGTGTCAAAATTTATTCACTCAGGGTGGATTCGGTTCATTCTGAGGCATATAAAGTCCTTGGTGGGATGAATAGAGCAGGCCAAGAAGCTGAGCAAGGTTACACTTATTACCCTCTTATTAAGCCTAGCATATTCTGATTCTCTTTTTTTTCTTCATTATCTGCACAAGTTGCATTTGTTTCTCGATGATTGCTTTGTGGATGAGAGTTACAGGGATTGCTTTTCTTCTGTATTGTATATTATAGTGTATATCGTATGTTATATTTCCTAATGTTTGATATCTTATGAATGTACAAATTCAAACGGTTTCATACTGCAGTACATTTACTTTTGGTTTTGAAATATTCTGTTTTATATTAGTTCAAATCTAATGCTTAGTCATAATGTCAGACACTACACTGGAGGGTGTTAATGTTGAAAATGGACAAGAAGGAAGCAGGAAAGAGACAGATAAAAAGGTCAATAGTCTGGATTTTTTTGATCATGACTGGTTAATGATAGTTTTTGCTTAGTTTGAAGAGTTGTTTGTTCATGCAGTTGTCACCTTTGTCAACACTGGAATCATCTTTTGAGGTTCTCAATGTAAAGAAGTTTGATGGTGATCACAAATCCTTATTCTATTTCCGTTATTAGTTATAAGCAGCATGTTTGAGGTTGTGCTGAAAGCATATATGCTATTATATATTTTTTTCAGCTGCATTTGTTGTTGATCCCCTCTATCGCCAGACAACTGCGAAATTTGACGAAGGAGGAGCCAAAGGTCTTTTAATGAATAATCTCGGTGTATATGGTGGATGTAGGCTGCTGTTTGATTCACTAGAAGTACCTGCAAAGTGTATGGAAAGCCAAAATGAACCTGATATTTCAGATACCATTGATCTTTCTTTTGCCAGAGGTGTGTTGCTTTGTGAAATATCCGGTGAAACTTCTTGTTACATATGCAAACCGAAACACATTCAATGTGGTGATTTAATTTTCTTTGTAGATTGTGTTGAGGAGATAGTATTAGAGATGCGTGTGAAAGATGAAATTTCTCCAACTCTGAGGACTATAGTAAACCAGTTCGATGAAAATAATAAAAGGCCTACTGGTTTTCAACTTCCTGGCCAGAATTCAGCGGAAGAGCTTGATGCCGATTTTAATTGTGAAAATGGCGCTGACGGAGAAGAATATGACAATGGCGCGACCTGGAGTGACGATCATGATGACCAACCAGTCATTGCTGATCTAGGCTCTAATGATGTAGACCCAAGTTTCCCTAGTTATCCTCAGGTTTGTCATGTTTTAACCATATAAACCTCTATGTCTGTTTAGGATGAGATTTTAAAATAGCCTCTTTTGATATTCTAACAAGTGAGTGGTTCAGCGGCTAAAGTAAAATTCTAAATTTTGTAGGAAAATGAGCAGTTTCCCTCCACAGACTCTGATATGGATGACAGATTTGAAAATGTTGATGGGTTCTTATTCTTGAGTCTGGGTTTTAATTCAAAACATAATGCATGGGCAGGCCCTGATCATTGGAAGTATAAAAAATCCAAAGGTGGGATTTGGAGGCCAGATAAAGAGATTTTAATGTTTTATGTTTCTTAGAATTGAACATTTTATTTATTTATTCTAGTTACTTTGTTGTAGTCTCTGAGGTTCAACCTACTTCCGAAGATGGGTCAACCCTGAAACCTAGGCAGACAAAGAGTAAGAAACAAGCCGAAGTTGATTTAGATTTCACAAATTCTCTGGAGAAAGACTTGTCTGATATATTTGCTCCTCCGAAGAATCCCAAAACATTACTTCTCCCTGAAAGCAGACCGCCTTGCAACACAAAACTTCCAGAGGACTGCCACTACCAGCCAGAGGAACTTGTCAAGCTATTTCTGCTTCCGGATGTGAAGGTAGTTTTTTTCTTTTTTGATCAAAAGAAATTAGTTTCTGTAAGACGTAGAAATCAGTTTCAAGGTACTTTCTTGTATGGAGTGATATTAATTTATATTTATCTCTGATGATTCATGTTCTTTCTTTAGTGTCTTGGGAGGAGAGCAAAAAGATTCTCAGGTAAAATGTTTAAAATTCTCCTTTTTAAAAATGTAGACTAATTACCATGCTTGTGCATATAGAGATCATTTAAAATGTCTTCAGCTGTCATTAGATTGTATTTCAAGCTTAGGTGCATTTGCAGATGCAGATGGATCTAGAGATCAATTCAACGAGAACGATCCATTCCCCTCTTGGGACAATGGAAGTGCTTGCGGTGGTGATGAGGCTGGTGATTATGAAGGTGATCATCACAGTGACATAGAGGATCCAGGCACTCTTATCACACAGCCACGTCAGGTAGGTTTTATTGAACATACGCATTTGCTCTTAATAAATTCCTCTAGGTATTATACACACTGATGAAAGAATGACGTCTTTCATTAGTGCATATACTAGTCATTAGTTTTCAGTCAAAATATTGCAGCAGGAATTCAAGTATAATAATATATGCTTATTTCCAAATAACAGGTCAGTAAAATAGAAGTCCAGTATGACAAAACGTCCAAACAGGTTGATGTTCAAGTGTTAAAAGTTACTCTTTGGGACCACGTTCAAGCATCTGTTAAGCTTCCTCCTGTTCAGGTATACCAAAATTCCTCCATTTCTTAAGAAACCCAGGGTACAGTTATCCTTCCCTCTCTGGTTTCTCTGATTGAAATGAAATTTGCTACAGTTAGTTTTGTTAAGACACAGTGCTATTTTAACTCTCCATAGGATTCTAGAGCATTACAAAAGCTGTTTATTTTTTCCTTGCCACTGAATGATAAGTTCTAATTCTTGCATTGTTTATTTCTGTTGACTCTCTATTCTACAGGGTCAAGAAGAAATAGTATCTTTCAAGAATTTATTGGCTAATTTTCCTGGTGAATGCAATGCCGCTGCAAACATCAGTGACATTTCTCCTCATTTGTGCTTCATATGTCTACTGCATTTGGCAAATGAGAAAGGATTGAGTATCCAAAGCTTCCCCAACTTGGACGATCTTTCAATATGCCTTCCACCTGTTGGTGATACTCATTAA

Protein sequence

>MS.gene61618.t1

MAETLSPTKLRLPVAARIQSPTSPFILGSNDDQLERAQARAARAAAIRRKNLPKINQKNTWELNLIDHLTDIIKAEEENDTETNFQKASCTLEAGVKIYSLRVDSVHSEAYKVLGGMNRAGQEAEQDTTLEGVNVENGQEGSRKETDKKLSPLSTLESSFEVLNVKKFDAAFVVDPLYRQTTAKFDEGGAKGLLMNNLGVYGGCRLLFDSLEVPAKCMESQNEPDISDTIDLSFARDCVEEIVLEMRVKDEISPTLRTIVNQFDENNKRPTGFQLPGQNSAEELDADFNCENGADGEEYDNGATWSDDHDDQPVIADLGSNDVDPSFPSYPQENEQFPSTDSDMDDRFENVDGFLFLSLGFNSKHNAWAGPDHWKYKKSKVSEVQPTSEDGSTLKPRQTKSKKQAEVDLDFTNSLEKDLSDIFAPPKNPKTLLLPESRPPCNTKLPEDCHYQPEELVKLFLLPDVKCLGRRAKRFSDADGSRDQFNENDPFPSWDNGSACGGDEAGDYEGDHHSDIEDPGTLITQPRQVSKIEVQYDKTSKQVDVQVLKVTLWDHVQASVKLPPVQGQEEIVSFKNLLANFPGECNAAANISDISPHLCFICLLHLANEKGLSIQSFPNLDDLSICLPPVGDTH