Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025118.t1 | XP_003595198.3 | 94.8 | 270 | 14 | 0 | 1 | 270 | 1 | 270 | 7.30E-143 | 516.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025118.t1 | A2Q1D0 | 94.8 | 270 | 14 | 0 | 1 | 270 | 1 | 270 | 5.2e-143 | 516.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene84672 | MS.gene025118 | PPI |
| MS.gene57567 | MS.gene025118 | PPI |
| MS.gene025118 | MS.gene85627 | PPI |
| MS.gene051858 | MS.gene025118 | PPI |
| MS.gene025118 | MS.gene025116 | PPI |
| MS.gene025118 | MS.gene85625 | PPI |
| MS.gene57569 | MS.gene025118 | PPI |
| MS.gene025115 | MS.gene025118 | PPI |
| MS.gene025118 | MS.gene026085 | PPI |
| MS.gene85626 | MS.gene025118 | PPI |
| MS.gene025118 | MS.gene025114 | PPI |
| MS.gene025118 | MS.gene059902 | PPI |
| MS.gene84671 | MS.gene025118 | PPI |
| MS.gene025118 | MS.gene012270 | PPI |
| MS.gene026086 | MS.gene025118 | PPI |
| MS.gene025118 | MS.gene83168 | PPI |
| MS.gene025118 | MS.gene026088 | PPI |
| MS.gene025118 | MS.gene025115 | PPI |
| MS.gene025118 | MS.gene026084 | PPI |
| MS.gene025118 | MS.gene026083 | PPI |
| MS.gene012270 | MS.gene025118 | PPI |
| MS.gene025114 | MS.gene025118 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025118.t1 | MTR_2g039570 | 94.717 | 265 | 14 | 0 | 6 | 270 | 1 | 265 | 0.0 | 518 |
| MS.gene025118.t1 | MTR_2g039510 | 82.759 | 261 | 43 | 1 | 12 | 270 | 13 | 273 | 4.50e-163 | 453 |
| MS.gene025118.t1 | MTR_2g039480 | 75.655 | 267 | 63 | 1 | 6 | 270 | 3 | 269 | 1.64e-148 | 416 |
| MS.gene025118.t1 | MTR_2g039450 | 70.566 | 265 | 74 | 1 | 6 | 266 | 3 | 267 | 1.69e-134 | 382 |
| MS.gene025118.t1 | MTR_4g126050 | 70.115 | 261 | 76 | 2 | 8 | 268 | 64 | 322 | 8.31e-134 | 381 |
| MS.gene025118.t1 | MTR_4g126120 | 62.595 | 262 | 97 | 1 | 1 | 262 | 1 | 261 | 5.31e-125 | 357 |
| MS.gene025118.t1 | MTR_4g126120 | 65.200 | 250 | 86 | 1 | 13 | 262 | 22 | 270 | 1.02e-124 | 356 |
| MS.gene025118.t1 | MTR_1g016050 | 59.514 | 247 | 99 | 1 | 13 | 259 | 8 | 253 | 2.50e-105 | 307 |
| MS.gene025118.t1 | MTR_4g126050 | 71.429 | 175 | 48 | 2 | 8 | 182 | 64 | 236 | 9.67e-86 | 256 |
| MS.gene025118.t1 | MTR_1g016060 | 43.407 | 182 | 82 | 2 | 88 | 268 | 467 | 628 | 1.34e-34 | 131 |
| MS.gene025118.t1 | MTR_2g039550 | 61.039 | 77 | 6 | 1 | 1 | 77 | 18 | 70 | 7.62e-23 | 89.4 |
| MS.gene025118.t1 | MTR_4g124530 | 50.943 | 53 | 23 | 1 | 118 | 167 | 14 | 66 | 8.99e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025118.t1 | AT3G47590 | 63.320 | 259 | 92 | 2 | 7 | 265 | 53 | 308 | 1.44e-119 | 344 |
| MS.gene025118.t1 | AT1G29840 | 59.623 | 265 | 104 | 2 | 1 | 265 | 50 | 311 | 4.41e-115 | 333 |
| MS.gene025118.t1 | AT3G47560 | 60.618 | 259 | 96 | 3 | 1 | 259 | 1 | 253 | 7.56e-113 | 326 |
| MS.gene025118.t1 | AT3G47560 | 60.618 | 259 | 96 | 3 | 1 | 259 | 37 | 289 | 5.91e-112 | 325 |
| MS.gene025118.t1 | AT5G11910 | 59.302 | 258 | 104 | 1 | 2 | 259 | 11 | 267 | 4.95e-111 | 322 |
| MS.gene025118.t1 | AT5G11910 | 59.302 | 258 | 104 | 1 | 2 | 259 | 29 | 285 | 5.19e-111 | 323 |
| MS.gene025118.t1 | AT3G47560 | 55.477 | 283 | 98 | 3 | 1 | 259 | 1 | 279 | 8.09e-109 | 317 |
| MS.gene025118.t1 | AT3G47560 | 54.895 | 286 | 96 | 4 | 1 | 259 | 1 | 280 | 3.11e-106 | 310 |
| MS.gene025118.t1 | AT3G47560 | 50.645 | 310 | 98 | 4 | 1 | 259 | 1 | 306 | 2.77e-102 | 301 |
| MS.gene025118.t1 | AT2G19550 | 55.906 | 254 | 102 | 6 | 14 | 262 | 5 | 253 | 8.64e-97 | 287 |
| MS.gene025118.t1 | AT3G47590 | 64.815 | 162 | 56 | 1 | 7 | 168 | 53 | 213 | 2.26e-73 | 224 |
| MS.gene025118.t1 | AT5G11910 | 59.603 | 151 | 60 | 1 | 2 | 152 | 11 | 160 | 1.37e-59 | 187 |
| MS.gene025118.t1 | AT5G11910 | 60.265 | 151 | 59 | 1 | 2 | 152 | 29 | 178 | 1.38e-59 | 187 |
Find 52 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTACTGTTGCAGGAAGTT+TGG | 0.288735 | 2.4:+50388283 | MS.gene025118:intron |
| CGTTCCAGTATGGTAACTAT+TGG | 0.315195 | 2.4:+50386354 | MS.gene025118:CDS |
| GGAAACCATTGACCACAATA+AGG | 0.339836 | 2.4:+50388679 | MS.gene025118:CDS |
| GTTCCAGTATGGTAACTATT+GGG | 0.346161 | 2.4:+50386355 | MS.gene025118:CDS |
| CGTGTAATCCGTGCAATTGT+TGG | 0.348094 | 2.4:+50386428 | MS.gene025118:CDS |
| ATGATATGCAACTTGTGATT+TGG | 0.362877 | 2.4:-50388587 | None:intergenic |
| CTCTGGACGTTATGATCTTA+AGG | 0.406623 | 2.4:+50387932 | MS.gene025118:CDS |
| AACTCGTGCGCACTTTGAAC+GGG | 0.413947 | 2.4:-50388551 | None:intergenic |
| GTTGAACCTTGTTGCTGCAT+TGG | 0.422568 | 2.4:+50385757 | MS.gene025118:CDS |
| AGTACCCTTATTGTGGTCAA+TGG | 0.432514 | 2.4:-50388684 | None:intergenic |
| TAACTATTGGGGAGAGGTGG+AGG | 0.437011 | 2.4:+50386367 | MS.gene025118:CDS |
| ATTGATGTGAAGACGAAGTC+AGG | 0.444727 | 2.4:+50388014 | MS.gene025118:CDS |
| AGCGAAGGTTCGTTCCAGTA+TGG | 0.446124 | 2.4:+50386344 | MS.gene025118:CDS |
| TTTGGATTACCGTGTTACTA+AGG | 0.456099 | 2.4:+50388301 | MS.gene025118:CDS |
| AAAACTGTTGTCAACCTCTC+TGG | 0.459812 | 2.4:+50387915 | MS.gene025118:CDS |
| TTAGAAAGAATTACGAATGA+GGG | 0.465192 | 2.4:+50387987 | MS.gene025118:CDS |
| GGCAGGGTCCTTACAGTTCA+CGG | 0.470147 | 2.4:+50388509 | MS.gene025118:intron |
| GAAACCATTGACCACAATAA+GGG | 0.482098 | 2.4:+50388680 | MS.gene025118:CDS |
| CCTTGTTGCTGCATTGGAAA+AGG | 0.484553 | 2.4:+50385763 | MS.gene025118:CDS |
| CTCCCCAATAGTTACCATAC+TGG | 0.488293 | 2.4:-50386358 | None:intergenic |
| AAACTCGTGCGCACTTTGAA+CGG | 0.492795 | 2.4:-50388552 | None:intergenic |
| AACAAGGTTCAACATGAGAT+TGG | 0.492861 | 2.4:-50385747 | None:intergenic |
| TTTAGAAAGAATTACGAATG+AGG | 0.495444 | 2.4:+50387986 | MS.gene025118:CDS |
| CAATAAGGGTACTGTTAGCT+AGG | 0.496770 | 2.4:+50388694 | MS.gene025118:CDS |
| GGAAAGTTTAATAGATCGCA+TGG | 0.498288 | 2.4:+50388322 | MS.gene025118:CDS |
| GACATTGTTATCTTATGTCA+TGG | 0.499984 | 2.4:+50385602 | MS.gene025118:CDS |
| TACTATGTCCAACAATTGCA+CGG | 0.505039 | 2.4:-50386436 | None:intergenic |
| CAGAAGAACCGTGAACTGTA+AGG | 0.532860 | 2.4:-50388517 | None:intergenic |
| AGTTGTTATGAGCTTCATCA+AGG | 0.533763 | 2.4:+50388658 | MS.gene025118:CDS |
| GCAATTGTTGGACATAGTAA+AGG | 0.544207 | 2.4:+50386440 | MS.gene025118:CDS |
| GGACGTTATGATCTTAAGGC+AGG | 0.563242 | 2.4:+50387936 | MS.gene025118:CDS |
| CGTTTCCAGAAAAGTCAAAA+CGG | 0.569451 | 2.4:-50385802 | None:intergenic |
| GTTGGTATATTACTTGAATG+TGG | 0.574389 | 2.4:+50385569 | MS.gene025118:CDS |
| AAGTGCGCACGAGTTTGCTA+AGG | 0.575019 | 2.4:+50388559 | MS.gene025118:CDS |
| TGGTAACTATTGGGGAGAGG+TGG | 0.578432 | 2.4:+50386364 | MS.gene025118:CDS |
| GGTATTATCACTCTCTGATG+AGG | 0.579146 | 2.4:-50385524 | None:intergenic |
| ACATAAGATAACAATGTCGT+TGG | 0.580798 | 2.4:-50385597 | None:intergenic |
| TTAAGGCAGGCATCGAAGAA+CGG | 0.583390 | 2.4:+50387949 | MS.gene025118:CDS |
| GCAGGCATCGAAGAACGGCT+TGG | 0.591925 | 2.4:+50387954 | MS.gene025118:CDS |
| TACAGATTGACAAAGAATGC+AGG | 0.592169 | 2.4:+50388369 | MS.gene025118:CDS |
| TTCCAGTATGGTAACTATTG+GGG | 0.594109 | 2.4:+50386356 | MS.gene025118:CDS |
| TGCATTCTTTGTCAATCTGT+AGG | 0.604687 | 2.4:-50388367 | None:intergenic |
| GTATGGTAACTATTGGGGAG+AGG | 0.614685 | 2.4:+50386361 | MS.gene025118:CDS |
| AGCTAACAGTACCCTTATTG+TGG | 0.617553 | 2.4:-50388691 | None:intergenic |
| GTGATAATACCCAACAAGCG+CGG | 0.627473 | 2.4:+50385536 | MS.gene025118:CDS |
| AAGCGCGGCGAAAAGCTCGT+TGG | 0.631703 | 2.4:+50385551 | MS.gene025118:CDS |
| TTAAACTTTCCTTAGTAACA+CGG | 0.639674 | 2.4:-50388310 | None:intergenic |
| GAAAGTTTAATAGATCGCAT+GGG | 0.650642 | 2.4:+50388323 | MS.gene025118:CDS |
| ACTCGTGCGCACTTTGAACG+GGG | 0.650817 | 2.4:-50388550 | None:intergenic |
| TTACCTTCCAGGGAAAGCGA+AGG | 0.669336 | 2.4:+50386329 | MS.gene025118:intron |
| GATGAAGCTCATAACAACTG+AGG | 0.686040 | 2.4:-50388654 | None:intergenic |
| TAAGATCATAACGTCCAGAG+AGG | 0.711327 | 2.4:-50387929 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAATAAAATTATTGAAT+TGG | + | chr2.4:50386208-50386227 | MS.gene025118:intron | 10.0% |
| !! | GAAAATAAAATTATTGAATT+GGG | + | chr2.4:50386209-50386228 | MS.gene025118:intron | 10.0% |
| !!! | GATTATTTTTTTTGTATATT+AGG | + | chr2.4:50385721-50385740 | MS.gene025118:intron | 10.0% |
| !! | AATAATCAATGAAAATAATC+TGG | - | chr2.4:50385708-50385727 | None:intergenic | 15.0% |
| !! | AATTGAATATTAACTCAATA+TGG | - | chr2.4:50385860-50385879 | None:intergenic | 15.0% |
| !! | AGAAAAATTAAGGTTAATTA+AGG | - | chr2.4:50387281-50387300 | None:intergenic | 15.0% |
| !! | GATCAATTAAAATCAATAAA+TGG | - | chr2.4:50385935-50385954 | None:intergenic | 15.0% |
| !!! | ATATTCAATTTTACTATGTT+TGG | + | chr2.4:50385870-50385889 | MS.gene025118:intron | 15.0% |
| !! | AATAAAATTATTGAATTGGG+TGG | + | chr2.4:50386212-50386231 | MS.gene025118:intron | 20.0% |
| !! | TAGATTAACTAAGAATTCTT+CGG | - | chr2.4:50387068-50387087 | None:intergenic | 20.0% |
| !! | TGTTACATAGATTAAAACAA+AGG | - | chr2.4:50388215-50388234 | None:intergenic | 20.0% |
| !! | TTACTTAAGTCGAAATAAAA+AGG | - | chr2.4:50385658-50385677 | None:intergenic | 20.0% |
| !!! | AGAATTCAGATAGATTTTAA+CGG | + | chr2.4:50388152-50388171 | MS.gene025118:intron | 20.0% |
| !!! | AGTTTTAATGTCATGATATT+TGG | - | chr2.4:50387901-50387920 | None:intergenic | 20.0% |
| !!! | CTTTTAAATAATGTGGATTT+CGG | - | chr2.4:50387160-50387179 | None:intergenic | 20.0% |
| !!! | TGTATATCTAGATATGTTTT+TGG | + | chr2.4:50386496-50386515 | MS.gene025118:intron | 20.0% |
| !!! | TTCTAGTCTTTTAAATAATG+TGG | - | chr2.4:50387167-50387186 | None:intergenic | 20.0% |
| ! | AAATTACATCATATATGGCA+GGG | + | chr2.4:50388493-50388512 | MS.gene025118:intron | 25.0% |
| ! | AAGCTGAGAAATATAGAAAA+TGG | + | chr2.4:50386010-50386029 | MS.gene025118:intron | 25.0% |
| ! | AGAAGTTTGGATAGAAAATT+AGG | - | chr2.4:50387587-50387606 | None:intergenic | 25.0% |
| ! | AGTCGAAATAAAAAGGAAAA+AGG | - | chr2.4:50385651-50385670 | None:intergenic | 25.0% |
| ! | ATGCCAAATTACATCATATA+TGG | + | chr2.4:50388488-50388507 | MS.gene025118:intron | 25.0% |
| ! | CGATGAATGATTGTATAAAT+TGG | - | chr2.4:50386539-50386558 | None:intergenic | 25.0% |
| ! | TAAGTTTATCAACGAAGAAA+TGG | - | chr2.4:50388439-50388458 | None:intergenic | 25.0% |
| ! | TTAAACTTTCCTTAGTAACA+CGG | - | chr2.4:50388313-50388332 | None:intergenic | 25.0% |
| ! | TTAGAAAGAATTACGAATGA+GGG | + | chr2.4:50387987-50388006 | MS.gene025118:CDS | 25.0% |
| ! | TTATGCATCAGTTAAATGAA+AGG | - | chr2.4:50387562-50387581 | None:intergenic | 25.0% |
| ! | TTTAGAAAGAATTACGAATG+AGG | + | chr2.4:50387986-50388005 | MS.gene025118:CDS | 25.0% |
| !! | AACAGTTCATGTCATAATTT+TGG | - | chr2.4:50387414-50387433 | None:intergenic | 25.0% |
| !! | GAATGTGTTTAACTTCAATT+TGG | - | chr2.4:50386758-50386777 | None:intergenic | 25.0% |
| !!! | GAATTCAGATAGATTTTAAC+GGG | + | chr2.4:50388153-50388172 | MS.gene025118:intron | 25.0% |
| AAACCAAACTAAAACTCCAA+AGG | + | chr2.4:50386658-50386677 | MS.gene025118:intron | 30.0% | |
| AATATATGCATCCTTCCAAA+AGG | - | chr2.4:50386061-50386080 | None:intergenic | 30.0% | |
| ACATAAGATAACAATGTCGT+TGG | - | chr2.4:50385600-50385619 | None:intergenic | 30.0% | |
| AGCTAAGGAGAGAAAAATTA+AGG | - | chr2.4:50387291-50387310 | None:intergenic | 30.0% | |
| ATAACGATCAAGTTCATATC+TGG | - | chr2.4:50387665-50387684 | None:intergenic | 30.0% | |
| ATATATGCATCCTTCCAAAA+GGG | - | chr2.4:50386060-50386079 | None:intergenic | 30.0% | |
| ATGATATGCAACTTGTGATT+TGG | - | chr2.4:50388590-50388609 | None:intergenic | 30.0% | |
| CAAATTACATCATATATGGC+AGG | + | chr2.4:50388492-50388511 | MS.gene025118:intron | 30.0% | |
| CAATGAAAATAATCTGGCAA+AGG | - | chr2.4:50385702-50385721 | None:intergenic | 30.0% | |
| CTGCCATATATGATGTAATT+TGG | - | chr2.4:50388494-50388513 | None:intergenic | 30.0% | |
| GAAAGTTTAATAGATCGCAT+GGG | + | chr2.4:50388323-50388342 | MS.gene025118:CDS | 30.0% | |
| GACATTGTTATCTTATGTCA+TGG | + | chr2.4:50385602-50385621 | MS.gene025118:CDS | 30.0% | |
| GCATATATTCTTAGGATTGT+TGG | + | chr2.4:50386072-50386091 | MS.gene025118:intron | 30.0% | |
| GTTGGTATATTACTTGAATG+TGG | + | chr2.4:50385569-50385588 | MS.gene025118:CDS | 30.0% | |
| TATGTTTGGATGTATAGAGA+TGG | + | chr2.4:50385884-50385903 | MS.gene025118:intron | 30.0% | |
| TCAATTGGATAGGTAGATTT+GGG | - | chr2.4:50387131-50387150 | None:intergenic | 30.0% | |
| TCTTCATACTACATCATTCA+AGG | - | chr2.4:50387487-50387506 | None:intergenic | 30.0% | |
| TTTACAGGTTTATTGTACTG+CGG | - | chr2.4:50386792-50386811 | None:intergenic | 30.0% | |
| ! | ACATTCAATCATTTTGCCAT+TGG | + | chr2.4:50387194-50387213 | MS.gene025118:intron | 30.0% |
| ! | TTTTGCTTTCTCCTAATTGT+GGG | + | chr2.4:50386305-50386324 | MS.gene025118:intron | 30.0% |
| ! | TTTTTGCTTTCTCCTAATTG+TGG | + | chr2.4:50386304-50386323 | MS.gene025118:intron | 30.0% |
| !! | ATGGATTCTACAATTTTGAC+AGG | + | chr2.4:50385408-50385427 | MS.gene025118:CDS | 30.0% |
| !! | CATGTCATAATTTTGGTGTA+TGG | - | chr2.4:50387407-50387426 | None:intergenic | 30.0% |
| !!! | AAGTTTGCAGCATCTTTTTT+TGG | - | chr2.4:50386916-50386935 | None:intergenic | 30.0% |
| !!! | TGGAGTTTTAGTTTGGTTTT+GGG | - | chr2.4:50386657-50386676 | None:intergenic | 30.0% |
| !!! | TTGGAGTTTTAGTTTGGTTT+TGG | - | chr2.4:50386658-50386677 | None:intergenic | 30.0% |
| AACAAGGTTCAACATGAGAT+TGG | - | chr2.4:50385750-50385769 | None:intergenic | 35.0% | |
| ACTAATCATTCACACCAAAC+GGG | - | chr2.4:50386130-50386149 | None:intergenic | 35.0% | |
| AGGATATGTTTCATGAAGTG+AGG | - | chr2.4:50387261-50387280 | None:intergenic | 35.0% | |
| AGTTGTTATGAGCTTCATCA+AGG | + | chr2.4:50388658-50388677 | MS.gene025118:CDS | 35.0% | |
| ATGACATGAACTGTTCTTGT+CGG | + | chr2.4:50387419-50387438 | MS.gene025118:intron | 35.0% | |
| ATTGACAAAGAATGCAGGTT+AGG | + | chr2.4:50388374-50388393 | MS.gene025118:intron | 35.0% | |
| ATTTCATGTCAATCCTGCTT+TGG | + | chr2.4:50387446-50387465 | MS.gene025118:intron | 35.0% | |
| CAACCAAAGTCAATCATTCT+TGG | - | chr2.4:50386994-50387013 | None:intergenic | 35.0% | |
| CACTAATCATTCACACCAAA+CGG | - | chr2.4:50386131-50386150 | None:intergenic | 35.0% | |
| CATAGCTAACAATGAAGACA+AGG | - | chr2.4:50386278-50386297 | None:intergenic | 35.0% | |
| CGTTTCCAGAAAAGTCAAAA+CGG | - | chr2.4:50385805-50385824 | None:intergenic | 35.0% | |
| CTAATCTCATGCTAGAAGTT+TGG | - | chr2.4:50387600-50387619 | None:intergenic | 35.0% | |
| CTCAATTGGATAGGTAGATT+TGG | - | chr2.4:50387132-50387151 | None:intergenic | 35.0% | |
| GAAACCATTGACCACAATAA+GGG | + | chr2.4:50388680-50388699 | MS.gene025118:CDS | 35.0% | |
| GAAATGGAACCAGAAGTAAA+AGG | - | chr2.4:50388423-50388442 | None:intergenic | 35.0% | |
| GAACTACACTGCAAATAGAT+AGG | + | chr2.4:50385983-50386002 | MS.gene025118:intron | 35.0% | |
| GAAGAGAGTTGTGTAATTTC+TGG | + | chr2.4:50387502-50387521 | MS.gene025118:intron | 35.0% | |
| GATATGTTTCATGAAGTGAG+GGG | - | chr2.4:50387259-50387278 | None:intergenic | 35.0% | |
| GCAATTGTTGGACATAGTAA+AGG | + | chr2.4:50386440-50386459 | MS.gene025118:CDS | 35.0% | |
| GGAAAGTTTAATAGATCGCA+TGG | + | chr2.4:50388322-50388341 | MS.gene025118:CDS | 35.0% | |
| GGAAGGATGCATATATTCTT+AGG | + | chr2.4:50386064-50386083 | MS.gene025118:intron | 35.0% | |
| GGATATGTTTCATGAAGTGA+GGG | - | chr2.4:50387260-50387279 | None:intergenic | 35.0% | |
| GTTCCAGTATGGTAACTATT+GGG | + | chr2.4:50386355-50386374 | MS.gene025118:CDS | 35.0% | |
| TAAGAATCGAGAGAATCGAT+TGG | - | chr2.4:50387784-50387803 | None:intergenic | 35.0% | |
| TACAGATTGACAAAGAATGC+AGG | + | chr2.4:50388369-50388388 | MS.gene025118:CDS | 35.0% | |
| TACTATGTCCAACAATTGCA+CGG | - | chr2.4:50386439-50386458 | None:intergenic | 35.0% | |
| TCTTGGAGAAACATGCTAAA+CGG | - | chr2.4:50386977-50386996 | None:intergenic | 35.0% | |
| TGCATTCTTTGTCAATCTGT+AGG | - | chr2.4:50388370-50388389 | None:intergenic | 35.0% | |
| TTCCAGTATGGTAACTATTG+GGG | + | chr2.4:50386356-50386375 | MS.gene025118:CDS | 35.0% | |
| TTGACAAAGAATGCAGGTTA+GGG | + | chr2.4:50388375-50388394 | MS.gene025118:intron | 35.0% | |
| TTTGCACAGCTTATGCTTAA+TGG | - | chr2.4:50386570-50386589 | None:intergenic | 35.0% | |
| ! | AATCGATTCTCTCGATTCTT+AGG | + | chr2.4:50387783-50387802 | MS.gene025118:intron | 35.0% |
| ! | ATCTCTTCTCCTTTTACTTC+TGG | + | chr2.4:50388411-50388430 | MS.gene025118:intron | 35.0% |
| ! | CAAGAATGATTGACTTTGGT+TGG | + | chr2.4:50386992-50387011 | MS.gene025118:intron | 35.0% |
| ! | GAGCATTTAGAGCAATTTAC+AGG | - | chr2.4:50386807-50386826 | None:intergenic | 35.0% |
| ! | GATAAGAGAATGACTGACTT+TGG | + | chr2.4:50387040-50387059 | MS.gene025118:intron | 35.0% |
| ! | GCTGGTAGAAACACTATTTT+GGG | - | chr2.4:50387372-50387391 | None:intergenic | 35.0% |
| ! | TAAATTGCTCTAAATGCTCC+TGG | + | chr2.4:50386808-50386827 | MS.gene025118:intron | 35.0% |
| ! | TCAATTTTCATTATCCGCGA+TGG | - | chr2.4:50388187-50388206 | None:intergenic | 35.0% |
| ! | TCTCCAAGAATGATTGACTT+TGG | + | chr2.4:50386988-50387007 | MS.gene025118:intron | 35.0% |
| ! | TGCTGGTAGAAACACTATTT+TGG | - | chr2.4:50387373-50387392 | None:intergenic | 35.0% |
| ! | TTTGGATTACCGTGTTACTA+AGG | + | chr2.4:50388301-50388320 | MS.gene025118:CDS | 35.0% |
| !! | ACTTTGTTTGCCTCTGTTTT+AGG | - | chr2.4:50386594-50386613 | None:intergenic | 35.0% |
| !! | TTTTGGTGTATGGAGAAAAG+TGG | - | chr2.4:50387397-50387416 | None:intergenic | 35.0% |
| !!! | ACAAACATTTTGACTGCACA+TGG | - | chr2.4:50385957-50385976 | None:intergenic | 35.0% |
| !!! | CGTTTTGACTTTTCTGGAAA+CGG | + | chr2.4:50385803-50385822 | MS.gene025118:CDS | 35.0% |
| !!! | CTCTCATTTGTTTTTGTAGC+TGG | + | chr2.4:50385497-50385516 | MS.gene025118:intron | 35.0% |
| !!! | GTTTTGACTTTTCTGGAAAC+GGG | + | chr2.4:50385804-50385823 | MS.gene025118:CDS | 35.0% |
| !!! | TCTTTCCGTTTTGACTTTTC+TGG | + | chr2.4:50385797-50385816 | MS.gene025118:CDS | 35.0% |
| !!! | TTGCCTTTGGAGTTTTAGTT+TGG | - | chr2.4:50386664-50386683 | None:intergenic | 35.0% |
| AAAACTGTTGTCAACCTCTC+TGG | + | chr2.4:50387915-50387934 | MS.gene025118:CDS | 40.0% | |
| AATTGTGGGTTTACCTTCCA+GGG | + | chr2.4:50386319-50386338 | MS.gene025118:intron | 40.0% | |
| ACTTTGAACTTGAACCCGTT+TGG | + | chr2.4:50386113-50386132 | MS.gene025118:intron | 40.0% | |
| AGCTAACAGTACCCTTATTG+TGG | - | chr2.4:50388694-50388713 | None:intergenic | 40.0% | |
| AGGTTTATTGTACTGCGGAA+AGG | - | chr2.4:50386787-50386806 | None:intergenic | 40.0% | |
| AGTACCCTTATTGTGGTCAA+TGG | - | chr2.4:50388687-50388706 | None:intergenic | 40.0% | |
| ATAGGTAGATTTGGGAGGAT+GGG | - | chr2.4:50387123-50387142 | None:intergenic | 40.0% | |
| ATCTACTGTTGCAGGAAGTT+TGG | + | chr2.4:50388283-50388302 | MS.gene025118:intron | 40.0% | |
| ATTGATGTGAAGACGAAGTC+AGG | + | chr2.4:50388014-50388033 | MS.gene025118:CDS | 40.0% | |
| ATTGGATAGGTAGATTTGGG+AGG | - | chr2.4:50387128-50387147 | None:intergenic | 40.0% | |
| CCTAGACAAATTTGCGTGAA+AGG | - | chr2.4:50387810-50387829 | None:intergenic | 40.0% | |
| CCTTTCACGCAAATTTGTCT+AGG | + | chr2.4:50387807-50387826 | MS.gene025118:intron | 40.0% | |
| CGATCAAGTTCATATCTGGA+CGG | - | chr2.4:50387661-50387680 | None:intergenic | 40.0% | |
| CGTTCCAGTATGGTAACTAT+TGG | + | chr2.4:50386354-50386373 | MS.gene025118:CDS | 40.0% | |
| CTCTGGACGTTATGATCTTA+AGG | + | chr2.4:50387932-50387951 | MS.gene025118:CDS | 40.0% | |
| CTTTGGTTGGAAGTCTATCT+TGG | + | chr2.4:50387005-50387024 | MS.gene025118:intron | 40.0% | |
| GATGAAGCTCATAACAACTG+AGG | - | chr2.4:50388657-50388676 | None:intergenic | 40.0% | |
| GCAAATTTGTCTAGGCTGAT+TGG | + | chr2.4:50387815-50387834 | MS.gene025118:intron | 40.0% | |
| GCAATCTTAACATCCAAAGC+AGG | - | chr2.4:50387462-50387481 | None:intergenic | 40.0% | |
| GGAAACCATTGACCACAATA+AGG | + | chr2.4:50388679-50388698 | MS.gene025118:CDS | 40.0% | |
| GGAGAAGAGAGTTATTCCAA+TGG | - | chr2.4:50387213-50387232 | None:intergenic | 40.0% | |
| GGATTTCGGAAAGACTCAAT+TGG | - | chr2.4:50387146-50387165 | None:intergenic | 40.0% | |
| GGTATTATCACTCTCTGATG+AGG | - | chr2.4:50385527-50385546 | None:intergenic | 40.0% | |
| GTCAATGTGATTGTCAACAC+AGG | - | chr2.4:50386169-50386188 | None:intergenic | 40.0% | |
| TAAGATCATAACGTCCAGAG+AGG | - | chr2.4:50387932-50387951 | None:intergenic | 40.0% | |
| TAATTGTGGGTTTACCTTCC+AGG | + | chr2.4:50386318-50386337 | MS.gene025118:intron | 40.0% | |
| TCCACACAAATAACGCAACA+GGG | + | chr2.4:50386887-50386906 | MS.gene025118:intron | 40.0% | |
| TCGGAAAGACTCAATTGGAT+AGG | - | chr2.4:50387141-50387160 | None:intergenic | 40.0% | |
| TGACAAAGAATGCAGGTTAG+GGG | + | chr2.4:50388376-50388395 | MS.gene025118:intron | 40.0% | |
| TGGAAGGTAAACCCACAATT+AGG | - | chr2.4:50386319-50386338 | None:intergenic | 40.0% | |
| TTAGTCTGCTATTCTGCTAC+TGG | - | chr2.4:50386688-50386707 | None:intergenic | 40.0% | |
| TTGAGAACATCTACTGTTGC+AGG | + | chr2.4:50388275-50388294 | MS.gene025118:intron | 40.0% | |
| ! | ATATCTGGACGGTTTTGCAA+AGG | - | chr2.4:50387650-50387669 | None:intergenic | 40.0% |
| !! | CAGATAGATTTTAACGGGCA+AGG | + | chr2.4:50388158-50388177 | MS.gene025118:intron | 40.0% |
| !! | GGTAGAAACACTATTTTGGG+AGG | - | chr2.4:50387369-50387388 | None:intergenic | 40.0% |
| AAACTCGTGCGCACTTTGAA+CGG | - | chr2.4:50388555-50388574 | None:intergenic | 45.0% | |
| AGTTCAATCTTGCAGTGGCT+CGG | - | chr2.4:50386868-50386887 | None:intergenic | 45.0% | |
| ATTAGTGTGCCTTCTGCAGT+GGG | - | chr2.4:50386947-50386966 | None:intergenic | 45.0% | |
| CACTGAAAGACAGTTATGGC+AGG | - | chr2.4:50387325-50387344 | None:intergenic | 45.0% | |
| CAGAAGAACCGTGAACTGTA+AGG | - | chr2.4:50388520-50388539 | None:intergenic | 45.0% | |
| CAGGCTGTACATAGTAGCTA+AGG | - | chr2.4:50387306-50387325 | None:intergenic | 45.0% | |
| CCTTGTTGCTGCATTGGAAA+AGG | + | chr2.4:50385763-50385782 | MS.gene025118:CDS | 45.0% | |
| CGTGTAATCCGTGCAATTGT+TGG | + | chr2.4:50386428-50386447 | MS.gene025118:CDS | 45.0% | |
| CTCCACACAAATAACGCAAC+AGG | + | chr2.4:50386886-50386905 | MS.gene025118:intron | 45.0% | |
| CTCCCCAATAGTTACCATAC+TGG | - | chr2.4:50386361-50386380 | None:intergenic | 45.0% | |
| CTGTGCAAAGCCTAAAACAG+AGG | + | chr2.4:50386581-50386600 | MS.gene025118:intron | 45.0% | |
| GATAGGTAGATTTGGGAGGA+TGG | - | chr2.4:50387124-50387143 | None:intergenic | 45.0% | |
| GGACGTTATGATCTTAAGGC+AGG | + | chr2.4:50387936-50387955 | MS.gene025118:CDS | 45.0% | |
| GTATGGTAACTATTGGGGAG+AGG | + | chr2.4:50386361-50386380 | MS.gene025118:CDS | 45.0% | |
| GTGATAATACCCAACAAGCG+CGG | + | chr2.4:50385536-50385555 | MS.gene025118:CDS | 45.0% | |
| GTTGAACCTTGTTGCTGCAT+TGG | + | chr2.4:50385757-50385776 | MS.gene025118:CDS | 45.0% | |
| TGTGGAGTTCAATCTTGCAG+TGG | - | chr2.4:50386873-50386892 | None:intergenic | 45.0% | |
| TGTTTCATGAAGTGAGGGGT+TGG | - | chr2.4:50387255-50387274 | None:intergenic | 45.0% | |
| ! | CCTTTTCCAATGCAGCAACA+AGG | - | chr2.4:50385766-50385785 | None:intergenic | 45.0% |
| ! | TCAACAGCTTTTGCAGCTGA+AGG | - | chr2.4:50386834-50386853 | None:intergenic | 45.0% |
| !! | ACTATTTTGGGAGGACCCTT+GGG | - | chr2.4:50387360-50387379 | None:intergenic | 45.0% |
| !! | GGAGCACTGAAAGACAGTTA+TGG | - | chr2.4:50387329-50387348 | None:intergenic | 45.0% |
| !! | TTAAGGCAGGCATCGAAGAA+CGG | + | chr2.4:50387949-50387968 | MS.gene025118:CDS | 45.0% |
| !! | TTCTGCTACTGGTTTGCCTT+TGG | - | chr2.4:50386677-50386696 | None:intergenic | 45.0% |
| !! | TTGTTTCTGTGTCGTGATGC+AGG | + | chr2.4:50387849-50387868 | MS.gene025118:intron | 45.0% |
| AACTCGTGCGCACTTTGAAC+GGG | - | chr2.4:50388554-50388573 | None:intergenic | 50.0% | |
| AAGGGCAACCCACACATAGA+TGG | - | chr2.4:50386042-50386061 | None:intergenic | 50.0% | |
| AGCGAAGGTTCGTTCCAGTA+TGG | + | chr2.4:50386344-50386363 | MS.gene025118:CDS | 50.0% | |
| CAACCCACACATAGATGGCA+TGG | - | chr2.4:50386037-50386056 | None:intergenic | 50.0% | |
| CATTAGTGTGCCTTCTGCAG+TGG | - | chr2.4:50386948-50386967 | None:intergenic | 50.0% | |
| GCCCTGTTGCGTTATTTGTG+TGG | - | chr2.4:50386891-50386910 | None:intergenic | 50.0% | |
| GGACCATGCCATCTATGTGT+GGG | + | chr2.4:50386031-50386050 | MS.gene025118:intron | 50.0% | |
| GTAGATTTGGGAGGATGGGA+GGG | - | chr2.4:50387119-50387138 | None:intergenic | 50.0% | |
| GTATGGAGAAAAGTGGCTGC+TGG | - | chr2.4:50387390-50387409 | None:intergenic | 50.0% | |
| TAACTATTGGGGAGAGGTGG+AGG | + | chr2.4:50386367-50386386 | MS.gene025118:CDS | 50.0% | |
| TAGATTTGGGAGGATGGGAG+GGG | - | chr2.4:50387118-50387137 | None:intergenic | 50.0% | |
| TGGACCATGCCATCTATGTG+TGG | + | chr2.4:50386030-50386049 | MS.gene025118:intron | 50.0% | |
| TGGTAACTATTGGGGAGAGG+TGG | + | chr2.4:50386364-50386383 | MS.gene025118:CDS | 50.0% | |
| TGTGATCGCTGTGGAAAGTG+AGG | - | chr2.4:50386725-50386744 | None:intergenic | 50.0% | |
| TTACCTTCCAGGGAAAGCGA+AGG | + | chr2.4:50386329-50386348 | MS.gene025118:intron | 50.0% | |
| TTAGTGTGCCTTCTGCAGTG+GGG | - | chr2.4:50386946-50386965 | None:intergenic | 50.0% | |
| TTTCTGTGTCGTGATGCAGG+AGG | + | chr2.4:50387852-50387871 | MS.gene025118:intron | 50.0% | |
| !! | AAGTGCGCACGAGTTTGCTA+AGG | + | chr2.4:50388559-50388578 | MS.gene025118:CDS | 50.0% |
| !! | CACTATTTTGGGAGGACCCT+TGG | - | chr2.4:50387361-50387380 | None:intergenic | 50.0% |
| !! | CTATGTGTGGGTTGCCCTTT+TGG | + | chr2.4:50386043-50386062 | MS.gene025118:intron | 50.0% |
| AACGGGCAAGGTTTCCATCG+CGG | + | chr2.4:50388170-50388189 | MS.gene025118:intron | 55.0% | |
| AAGTGAGGGGTTGGAGAGTG+TGG | - | chr2.4:50387246-50387265 | None:intergenic | 55.0% | |
| ACTCGTGCGCACTTTGAACG+GGG | - | chr2.4:50388553-50388572 | None:intergenic | 55.0% | |
| AGATTTGGGAGGATGGGAGG+GGG | - | chr2.4:50387117-50387136 | None:intergenic | 55.0% | |
| AGTGCTCCACCATCTACCCA+AGG | + | chr2.4:50387341-50387360 | MS.gene025118:intron | 55.0% | |
| GAACCTTCGCTTTCCCTGGA+AGG | - | chr2.4:50386335-50386354 | None:intergenic | 55.0% | |
| GAACGAACCTTCGCTTTCCC+TGG | - | chr2.4:50386339-50386358 | None:intergenic | 55.0% | |
| GGCAGGGTCCTTACAGTTCA+CGG | + | chr2.4:50388509-50388528 | MS.gene025118:intron | 55.0% | |
| GGTAGATTTGGGAGGATGGG+AGG | - | chr2.4:50387120-50387139 | None:intergenic | 55.0% | |
| GTGCTCCACCATCTACCCAA+GGG | + | chr2.4:50387342-50387361 | MS.gene025118:intron | 55.0% | |
| TTGCTCTTCCCCACTGCAGA+AGG | + | chr2.4:50386935-50386954 | MS.gene025118:intron | 55.0% | |
| ! | AGCTTTTCGCCGCGCTTGTT+GGG | - | chr2.4:50385548-50385567 | None:intergenic | 55.0% |
| ! | AGCTTTTGCAGCTGAAGGCC+AGG | - | chr2.4:50386829-50386848 | None:intergenic | 55.0% |
| ! | GGAGAGTGTGGTTGTGGGAT+TGG | - | chr2.4:50387234-50387253 | None:intergenic | 55.0% |
| ! | GGGTTGGAGAGTGTGGTTGT+GGG | - | chr2.4:50387239-50387258 | None:intergenic | 55.0% |
| !! | GTGTGGGTTGCCCTTTTGGA+AGG | + | chr2.4:50386047-50386066 | MS.gene025118:intron | 55.0% |
| AAGCGCGGCGAAAAGCTCGT+TGG | + | chr2.4:50385551-50385570 | MS.gene025118:CDS | 60.0% | |
| GAGGACCCTTGGGTAGATGG+TGG | - | chr2.4:50387350-50387369 | None:intergenic | 60.0% | |
| GATTTGGGAGGATGGGAGGG+GGG | - | chr2.4:50387116-50387135 | None:intergenic | 60.0% | |
| TGGGAGGACCCTTGGGTAGA+TGG | - | chr2.4:50387353-50387372 | None:intergenic | 60.0% | |
| TTGCGAGCGTGTGATCGCTG+TGG | - | chr2.4:50386734-50386753 | None:intergenic | 60.0% | |
| ! | GAGCTTTTCGCCGCGCTTGT+TGG | - | chr2.4:50385549-50385568 | None:intergenic | 60.0% |
| ! | GGGGTTGGAGAGTGTGGTTG+TGG | - | chr2.4:50387240-50387259 | None:intergenic | 60.0% |
| !! | GCAGGCATCGAAGAACGGCT+TGG | + | chr2.4:50387954-50387973 | MS.gene025118:CDS | 60.0% |
| !! | GGATGGGAGGGGGGAGTATT+CGG | - | chr2.4:50387107-50387126 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 50385408 | 50388715 | 50385408 | ID=MS.gene025118 |
| chr2.4 | mRNA | 50385408 | 50388715 | 50385408 | ID=MS.gene025118.t1;Parent=MS.gene025118 |
| chr2.4 | exon | 50385408 | 50385429 | 50385408 | ID=MS.gene025118.t1.exon1;Parent=MS.gene025118.t1 |
| chr2.4 | CDS | 50385408 | 50385429 | 50385408 | ID=cds.MS.gene025118.t1;Parent=MS.gene025118.t1 |
| chr2.4 | exon | 50385516 | 50385640 | 50385516 | ID=MS.gene025118.t1.exon2;Parent=MS.gene025118.t1 |
| chr2.4 | CDS | 50385516 | 50385640 | 50385516 | ID=cds.MS.gene025118.t1;Parent=MS.gene025118.t1 |
| chr2.4 | exon | 50385743 | 50385825 | 50385743 | ID=MS.gene025118.t1.exon3;Parent=MS.gene025118.t1 |
| chr2.4 | CDS | 50385743 | 50385825 | 50385743 | ID=cds.MS.gene025118.t1;Parent=MS.gene025118.t1 |
| chr2.4 | exon | 50386340 | 50386461 | 50386340 | ID=MS.gene025118.t1.exon4;Parent=MS.gene025118.t1 |
| chr2.4 | CDS | 50386340 | 50386461 | 50386340 | ID=cds.MS.gene025118.t1;Parent=MS.gene025118.t1 |
| chr2.4 | exon | 50387871 | 50388035 | 50387871 | ID=MS.gene025118.t1.exon5;Parent=MS.gene025118.t1 |
| chr2.4 | CDS | 50387871 | 50388035 | 50387871 | ID=cds.MS.gene025118.t1;Parent=MS.gene025118.t1 |
| chr2.4 | exon | 50388297 | 50388390 | 50388297 | ID=MS.gene025118.t1.exon6;Parent=MS.gene025118.t1 |
| chr2.4 | CDS | 50388297 | 50388390 | 50388297 | ID=cds.MS.gene025118.t1;Parent=MS.gene025118.t1 |
| chr2.4 | exon | 50388514 | 50388715 | 50388514 | ID=MS.gene025118.t1.exon7;Parent=MS.gene025118.t1 |
| chr2.4 | CDS | 50388514 | 50388715 | 50388514 | ID=cds.MS.gene025118.t1;Parent=MS.gene025118.t1 |
| Gene Sequence |
| Protein sequence |
