AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84671

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84671.t1 MTR_2g039510 95.238 273 13 0 1 273 1 273 0.0 539
MS.gene84671.t1 MTR_2g039480 83.083 266 45 0 8 273 4 269 2.60e-166 461
MS.gene84671.t1 MTR_2g039570 80.377 265 50 1 9 273 3 265 1.48e-161 449
MS.gene84671.t1 MTR_2g039450 75.093 269 65 1 1 269 1 267 1.94e-145 409
MS.gene84671.t1 MTR_4g126050 70.480 271 75 3 1 271 57 322 2.14e-139 395
MS.gene84671.t1 MTR_4g126120 67.547 265 82 2 1 265 1 261 7.14e-135 382
MS.gene84671.t1 MTR_4g126120 65.428 269 81 2 6 265 5 270 6.26e-132 374
MS.gene84671.t1 MTR_1g016050 61.847 249 92 1 14 262 8 253 4.79e-112 324
MS.gene84671.t1 MTR_4g126050 69.730 185 51 3 1 185 57 236 1.48e-87 261
MS.gene84671.t1 MTR_1g016060 45.652 184 79 2 90 272 466 629 1.54e-38 142
MS.gene84671.t1 MTR_2g039550 51.471 68 7 1 13 80 29 70 1.28e-12 62.4
MS.gene84671.t1 MTR_4g124530 52.830 53 22 1 121 170 14 66 5.33e-12 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84671.t1 AT3G47590 65.882 255 82 2 14 268 59 308 1.07e-122 352
MS.gene84671.t1 AT1G29840 62.264 265 95 2 4 268 52 311 6.99e-120 345
MS.gene84671.t1 AT3G47560 64.400 250 84 2 13 262 9 253 1.52e-117 338
MS.gene84671.t1 AT3G47560 64.400 250 84 2 13 262 45 289 5.54e-117 338
MS.gene84671.t1 AT3G47560 58.759 274 86 2 13 262 9 279 9.13e-114 329
MS.gene84671.t1 AT5G11910 60.956 251 95 1 12 262 38 285 4.82e-113 328
MS.gene84671.t1 AT5G11910 60.956 251 95 1 12 262 20 267 5.77e-113 327
MS.gene84671.t1 AT3G47560 58.123 277 84 3 13 262 9 280 5.58e-111 322
MS.gene84671.t1 AT3G47560 53.488 301 86 3 13 262 9 306 2.34e-107 314
MS.gene84671.t1 AT2G19550 57.422 256 97 6 15 265 5 253 1.08e-99 295
MS.gene84671.t1 AT3G47590 67.089 158 49 1 14 171 59 213 3.11e-73 224
MS.gene84671.t1 AT5G11910 61.111 144 53 1 12 155 38 178 1.72e-59 187
MS.gene84671.t1 AT5G11910 61.111 144 53 1 12 155 20 160 2.07e-59 186

Find 43 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATACTGTTGCAGGAAATT+TGG 0.190110 2.3:+49871237 MS.gene84671:intron
AAGATTATTTGAAAAGAATT+AGG 0.263962 2.3:+49870951 MS.gene84671:CDS
ATGATATGTAACTTGTGATT+TGG 0.372549 2.3:-49871874 None:intergenic
AACTCATGTGCATCTTGAAC+CGG 0.377677 2.3:-49871838 None:intergenic
AGTACTCTTGTTGTGGTCAA+TGG 0.384576 2.3:-49871971 None:intergenic
TTTGATGTGAAGAGGAGTTC+AGG 0.389844 2.3:+49870986 MS.gene84671:CDS
GGAATATTACATGAATGTTC+TGG 0.393067 2.3:+49868941 MS.gene84671:CDS
GACAGGGTCGTAACAATTCA+TGG 0.429677 2.3:+49871796 MS.gene84671:intron
AAAACTGTTGTTAACCTCTC+TGG 0.430009 2.3:+49870887 MS.gene84671:CDS
TGTTACTGAGGAAAGTTTGA+TGG 0.439937 2.3:+49871267 MS.gene84671:CDS
CGTGTGATCCGTGCAATTGT+TGG 0.442805 2.3:+49870276 MS.gene84671:CDS
CAACAAGAGTACTGCTAGCT+AGG 0.447007 2.3:+49871981 MS.gene84671:CDS
TGCAGATTGACAAAGATTGC+AGG 0.447725 2.3:+49871323 MS.gene84671:CDS
ACTGAACCTTGCTGCTGCAT+TGG 0.448457 2.3:+49869142 MS.gene84671:CDS
CCTTGCTGCTGCATTGGAAA+AGG 0.467817 2.3:+49869148 MS.gene84671:CDS
CGTTTGAGTACGGTAACTAC+TGG 0.470793 2.3:+49870202 MS.gene84671:CDS
CACAAGTTACATATCATTGA+AGG 0.476698 2.3:+49871880 MS.gene84671:CDS
TGCAATCTTTGTCAATCTGC+AGG 0.492750 2.3:-49871321 None:intergenic
GGATCACACGATTTGATTCA+CGG 0.506479 2.3:-49870263 None:intergenic
GACATTGTTATCTTATGTCA+TGG 0.507199 2.3:+49868977 MS.gene84671:CDS
TTGAAAAGAATTAGGAAGGA+CGG 0.509594 2.3:+49870959 MS.gene84671:CDS
TTATTTGAAAAGAATTAGGA+AGG 0.529949 2.3:+49870955 MS.gene84671:CDS
ATCATAATACCCAACAAAAG+TGG 0.530706 2.3:+49868905 MS.gene84671:CDS
TTCTTCTGACGAAATTATCC+CGG 0.538226 2.3:+49871819 MS.gene84671:CDS
ACGGTTTCTTTGATGTGAAG+AGG 0.543472 2.3:+49870978 MS.gene84671:CDS
GCAATTGTTGGACATAGTAA+AGG 0.544207 2.3:+49870288 MS.gene84671:CDS
AGTTCTTACGAGCTTCATCA+AGG 0.545473 2.3:+49871945 MS.gene84671:CDS
TACTATGTCCAACAATTGCA+CGG 0.547440 2.3:-49870284 None:intergenic
CTCTGGACGTTATGATCTGA+AGG 0.550517 2.3:+49870904 MS.gene84671:CDS
AGCGAAGGTTCGTTTGAGTA+CGG 0.557534 2.3:+49870192 MS.gene84671:CDS
GGACGTTATGATCTGAAGGC+AGG 0.563099 2.3:+49870908 MS.gene84671:CDS
ACTCATGTGCATCTTGAACC+GGG 0.566619 2.3:-49871837 None:intergenic
AGCTAGCAGTACTCTTGTTG+TGG 0.580225 2.3:-49871978 None:intergenic
ACATAAGATAACAATGTCGT+TGG 0.580798 2.3:-49868972 None:intergenic
CATTTCCAGAAAAGTCAAAA+CGG 0.584654 2.3:-49869187 None:intergenic
CGGTAACTACTGGAAAGAAG+TGG 0.591735 2.3:+49870212 MS.gene84671:CDS
GCAGGCATTGAAGAACGCCT+TGG 0.597706 2.3:+49870926 MS.gene84671:CDS
GATATTTGGAAGCATACAGA+AGG 0.625385 2.3:-49870856 None:intergenic
TTTGGACTACCGTGTTACTG+AGG 0.647039 2.3:+49871255 MS.gene84671:CDS
TTTCCTTCAAGGGAAAGCGA+AGG 0.664955 2.3:+49870177 MS.gene84671:intron
TCAAACTTTCCTCAGTAACA+CGG 0.679801 2.3:-49871264 None:intergenic
GATGAAGCTCGTAAGAACTG+AGG 0.686004 2.3:-49871941 None:intergenic
TCAGATCATAACGTCCAGAG+AGG 0.713623 2.3:-49870901 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAGTTTTTAAAAAAAGTA+TGG - chr2.3:49871532-49871551 None:intergenic 10.0%
!! AAATGAATATTCAGTTAATA+TGG - chr2.3:49869360-49869379 None:intergenic 15.0%
!! AAGATTATTTGAAAAGAATT+AGG + chr2.3:49870951-49870970 MS.gene84671:CDS 15.0%
!! ATTCATTAAATGATCATTTA+AGG + chr2.3:49871212-49871231 MS.gene84671:intron 15.0%
!! GTAATAATTTGAGAAAAAAA+TGG - chr2.3:49869635-49869654 None:intergenic 15.0%
!! AAAATATAAGTCAATCCAAA+CGG + chr2.3:49869317-49869336 MS.gene84671:intron 20.0%
!! AATACCATGATAAAATGATA+AGG - chr2.3:49870020-49870039 None:intergenic 20.0%
!! ACATAAATTTATTGTACATG+AGG - chr2.3:49870080-49870099 None:intergenic 20.0%
!! ATCTCTATAATGATATTTGT+TGG + chr2.3:49870717-49870736 MS.gene84671:intron 20.0%
!! CAATGAATGATAGTATAAAT+TGG - chr2.3:49870398-49870417 None:intergenic 20.0%
!! GATAAAATGATAAGGAAATT+GGG - chr2.3:49870012-49870031 None:intergenic 20.0%
!! TAAACCAATTAATCATCTTT+CGG - chr2.3:49869741-49869760 None:intergenic 20.0%
!! TACATAAGAATTTGAGAAAA+TGG - chr2.3:49870760-49870779 None:intergenic 20.0%
!! TGATAAAATGATAAGGAAAT+TGG - chr2.3:49870013-49870032 None:intergenic 20.0%
!! TTATTTGAAAAGAATTAGGA+AGG + chr2.3:49870955-49870974 MS.gene84671:CDS 20.0%
!!! ATACCTATTTGTTAAAATGA+AGG - chr2.3:49870690-49870709 None:intergenic 20.0%
!!! ATTTCCTTATCATTTTATCA+TGG + chr2.3:49870013-49870032 MS.gene84671:intron 20.0%
!!! TATCCTTCATTTTAACAAAT+AGG + chr2.3:49870684-49870703 MS.gene84671:intron 20.0%
!!! TCAATTTTCATTATCCATAA+AGG - chr2.3:49871137-49871156 None:intergenic 20.0%
!!! TTAGAACTTTAGAATTCAAA+TGG + chr2.3:49871107-49871126 MS.gene84671:intron 20.0%
! AAATATAAGTCAATCCAAAC+GGG + chr2.3:49869318-49869337 MS.gene84671:intron 25.0%
! AACATGAAGATGTTAAGTTA+TGG + chr2.3:49870349-49870368 MS.gene84671:intron 25.0%
! ATAGTGCTACATATGATATA+CGG + chr2.3:49871675-49871694 MS.gene84671:intron 25.0%
! CAAAAATAAGTCAATCCATA+CGG - chr2.3:49869237-49869256 None:intergenic 25.0%
! GATTTATACTGCAAAATGAT+AGG + chr2.3:49869442-49869461 MS.gene84671:intron 25.0%
! TATATCCAAACTCAAAACAT+AGG - chr2.3:49869777-49869796 None:intergenic 25.0%
! TTGAATGTAAGAAACTAACA+TGG - chr2.3:49868797-49868816 None:intergenic 25.0%
!! AAGATGTTAAGTTATGGTTT+TGG + chr2.3:49870355-49870374 MS.gene84671:intron 25.0%
!! ACAATTCCTTTTCCAAAATT+GGG + chr2.3:49870045-49870064 MS.gene84671:intron 25.0%
!! ACATGAGCATTGTATTAATT+TGG + chr2.3:49871188-49871207 MS.gene84671:intron 25.0%
!! ATGATATGTAACTTGTGATT+TGG - chr2.3:49871877-49871896 None:intergenic 25.0%
!! ATTCAAATGGATTTCCTTTA+TGG + chr2.3:49871120-49871139 MS.gene84671:intron 25.0%
!! TGATTACTTTGAAAACAAAC+AGG - chr2.3:49871598-49871617 None:intergenic 25.0%
!! TTTTCAAATAATCTTTGCCA+AGG - chr2.3:49870946-49870965 None:intergenic 25.0%
!!! AGTTTTAATGTCGTGATATT+TGG - chr2.3:49870873-49870892 None:intergenic 25.0%
!!! GGTTTTTAGTTTAGGATTAT+TGG + chr2.3:49869952-49869971 MS.gene84671:intron 25.0%
!!! TATGTTTTGAGTTTGGATAT+AGG + chr2.3:49869776-49869795 MS.gene84671:intron 25.0%
!!! TTGAACTTATGCTTTTTAGT+GGG + chr2.3:49869693-49869712 MS.gene84671:intron 25.0%
!!! TTTGAACTTATGCTTTTTAG+TGG + chr2.3:49869692-49869711 MS.gene84671:intron 25.0%
!!! TTTGAAGGGTGTATATTTTT+AGG + chr2.3:49869499-49869518 MS.gene84671:intron 25.0%
AAAAGTGGTGAAAAACTTGT+TGG + chr2.3:49868920-49868939 MS.gene84671:CDS 30.0%
AAGAAGAAGAAGAAGAAGAA+AGG - chr2.3:49869026-49869045 None:intergenic 30.0%
AAGCTACATCATATATGACA+GGG + chr2.3:49871780-49871799 MS.gene84671:intron 30.0%
ACATAAGATAACAATGTCGT+TGG - chr2.3:49868975-49868994 None:intergenic 30.0%
ATAGCCGAAAGATGATTAAT+TGG + chr2.3:49869734-49869753 MS.gene84671:intron 30.0%
ATCATAATACCCAACAAAAG+TGG + chr2.3:49868905-49868924 MS.gene84671:CDS 30.0%
CAATCTTAACATGCAAAGTA+TGG - chr2.3:49870483-49870502 None:intergenic 30.0%
CACAAGTTACATATCATTGA+AGG + chr2.3:49871880-49871899 MS.gene84671:CDS 30.0%
CATTTCCAGAAAAGTCAAAA+CGG - chr2.3:49869190-49869209 None:intergenic 30.0%
GACATTGTTATCTTATGTCA+TGG + chr2.3:49868977-49868996 MS.gene84671:CDS 30.0%
GATACTTCTTGTCATAATTG+AGG - chr2.3:49870439-49870458 None:intergenic 30.0%
GATGAATGAACTGAATCATA+TGG + chr2.3:49869811-49869830 MS.gene84671:intron 30.0%
GGAATATTACATGAATGTTC+TGG + chr2.3:49868941-49868960 MS.gene84671:CDS 30.0%
GTCATAATTGAGGTGTATAA+TGG - chr2.3:49870429-49870448 None:intergenic 30.0%
TGTTATTACTCTTACAGTTC+TGG + chr2.3:49869931-49869950 MS.gene84671:intron 30.0%
TTGAAAAGAATTAGGAAGGA+CGG + chr2.3:49870959-49870978 MS.gene84671:CDS 30.0%
! AGGAAAATACTACCCAATTT+TGG - chr2.3:49870060-49870079 None:intergenic 30.0%
! GACAATTCCTTTTCCAAAAT+TGG + chr2.3:49870044-49870063 MS.gene84671:intron 30.0%
! TACTTTGAAAACAAACAGGT+AGG - chr2.3:49871594-49871613 None:intergenic 30.0%
! TGGACATAGTAAAGGTATAT+TGG + chr2.3:49870296-49870315 MS.gene84671:intron 30.0%
!! AAGTTTTTCACCACTTTTGT+TGG - chr2.3:49868918-49868937 None:intergenic 30.0%
!! AGTTTTTCACCACTTTTGTT+GGG - chr2.3:49868917-49868936 None:intergenic 30.0%
!! ATACTACCCAATTTTGGAAA+AGG - chr2.3:49870054-49870073 None:intergenic 30.0%
!! GATGAAGTTCAATTTTAGCA+TGG - chr2.3:49870662-49870681 None:intergenic 30.0%
!! TGAACTTATGCTTTTTAGTG+GGG + chr2.3:49869694-49869713 MS.gene84671:intron 30.0%
!! TTCTCTTAACTTTAGCTTGT+GGG + chr2.3:49870153-49870172 MS.gene84671:intron 30.0%
!! TTTCTCTTAACTTTAGCTTG+TGG + chr2.3:49870152-49870171 MS.gene84671:intron 30.0%
!!! ACAGTTCTGGTTTTTAGTTT+AGG + chr2.3:49869944-49869963 MS.gene84671:intron 30.0%
!!! ATTTGCCTATGTTTTGAGTT+TGG + chr2.3:49869769-49869788 MS.gene84671:intron 30.0%
!!! GTTTTGACTTTTCTGGAAAT+GGG + chr2.3:49869189-49869208 MS.gene84671:CDS 30.0%
AAAACTGTTGTTAACCTCTC+TGG + chr2.3:49870887-49870906 MS.gene84671:CDS 35.0%
AAAAGGAGAAGAGATCAAAC+AGG - chr2.3:49871360-49871379 None:intergenic 35.0%
ACATACTGTTGCAGGAAATT+TGG + chr2.3:49871237-49871256 MS.gene84671:intron 35.0%
AGAAAGCAAAGAATGAAGCA+AGG - chr2.3:49870137-49870156 None:intergenic 35.0%
AGGATTGATGTGATTTCATG+TGG + chr2.3:49869519-49869538 MS.gene84671:intron 35.0%
ATGATGATTTAGTGTCCGTA+TGG + chr2.3:49869219-49869238 MS.gene84671:intron 35.0%
CAAGCTACATCATATATGAC+AGG + chr2.3:49871779-49871798 MS.gene84671:intron 35.0%
CATGCTTGAACAACAAAGAA+TGG - chr2.3:49871393-49871412 None:intergenic 35.0%
CTGTCATATATGATGTAGCT+TGG - chr2.3:49871781-49871800 None:intergenic 35.0%
GATAAATGAAAGCTCATTCC+TGG - chr2.3:49870563-49870582 None:intergenic 35.0%
GCAATTGTTGGACATAGTAA+AGG + chr2.3:49870288-49870307 MS.gene84671:CDS 35.0%
GTAGACTATAAAGAACACAC+TGG - chr2.3:49869669-49869688 None:intergenic 35.0%
TACTATGTCCAACAATTGCA+CGG - chr2.3:49870287-49870306 None:intergenic 35.0%
TCAAACTTTCCTCAGTAACA+CGG - chr2.3:49871267-49871286 None:intergenic 35.0%
TGACAAAGATTGCAGGTTAA+TGG + chr2.3:49871330-49871349 MS.gene84671:intron 35.0%
TGTTACTGAGGAAAGTTTGA+TGG + chr2.3:49871267-49871286 MS.gene84671:CDS 35.0%
TTCAGGTAAATCGTTTACTC+AGG + chr2.3:49871003-49871022 MS.gene84671:intron 35.0%
TTCTTCTGACGAAATTATCC+CGG + chr2.3:49871819-49871838 MS.gene84671:CDS 35.0%
! GATATTTGGAAGCATACAGA+AGG - chr2.3:49870859-49870878 None:intergenic 35.0%
! TCCTGGTTGTTCTTTTTGAA+GGG + chr2.3:49869485-49869504 MS.gene84671:intron 35.0%
!! ATGCTTTTTAGTGGGGTATT+GGG + chr2.3:49869701-49869720 MS.gene84671:intron 35.0%
!! TATGCTTTTTAGTGGGGTAT+TGG + chr2.3:49869700-49869719 MS.gene84671:intron 35.0%
!!! CGTTTTGACTTTTCTGGAAA+TGG + chr2.3:49869188-49869207 MS.gene84671:CDS 35.0%
!!! TCTTTCCGTTTTGACTTTTC+TGG + chr2.3:49869182-49869201 MS.gene84671:CDS 35.0%
AACTCATGTGCATCTTGAAC+CGG - chr2.3:49871841-49871860 None:intergenic 40.0%
ACCAAAGCAAACACATCAGA+CGG - chr2.3:49869868-49869887 None:intergenic 40.0%
ACCCTTCAAAAAGAACAACC+AGG - chr2.3:49869489-49869508 None:intergenic 40.0%
ACGGTTTCTTTGATGTGAAG+AGG + chr2.3:49870978-49870997 MS.gene84671:CDS 40.0%
AGAATGGAGCTAGCAGTAAA+AGG - chr2.3:49871377-49871396 None:intergenic 40.0%
AGTTCTTACGAGCTTCATCA+AGG + chr2.3:49871945-49871964 MS.gene84671:CDS 40.0%
CCATCATCCTAGCAAACTTT+GGG - chr2.3:49870789-49870808 None:intergenic 40.0%
CTACATATGATATACGGCGA+AGG + chr2.3:49871681-49871700 MS.gene84671:intron 40.0%
GAAGAGATTTGCGTAACTTC+TGG + chr2.3:49870524-49870543 MS.gene84671:intron 40.0%
GGATCACACGATTTGATTCA+CGG - chr2.3:49870266-49870285 None:intergenic 40.0%
TCCATCATCCTAGCAAACTT+TGG - chr2.3:49870790-49870809 None:intergenic 40.0%
TCTGGCAAAAAACATACACC+AGG + chr2.3:49870542-49870561 MS.gene84671:intron 40.0%
TGCAATCTTTGTCAATCTGC+AGG - chr2.3:49871324-49871343 None:intergenic 40.0%
TGCAGATTGACAAAGATTGC+AGG + chr2.3:49871323-49871342 MS.gene84671:CDS 40.0%
TTAAGGACACATACTGTTGC+AGG + chr2.3:49871229-49871248 MS.gene84671:intron 40.0%
TTTGATGTGAAGAGGAGTTC+AGG + chr2.3:49870986-49871005 MS.gene84671:CDS 40.0%
! ACTTTCACCCAAAGTTTGCT+AGG + chr2.3:49870779-49870798 MS.gene84671:intron 40.0%
! AGTACTCTTGTTGTGGTCAA+TGG - chr2.3:49871974-49871993 None:intergenic 40.0%
! GTCCTGGTTGTTCTTTTTGA+AGG + chr2.3:49869484-49869503 MS.gene84671:intron 40.0%
! TTTGAGTTTGGATATAGGCG+TGG + chr2.3:49869781-49869800 MS.gene84671:intron 40.0%
!! TTGTTTCTGTGTCATGATGC+AGG + chr2.3:49870821-49870840 MS.gene84671:intron 40.0%
!!! TGCTTTTTAGTGGGGTATTG+GGG + chr2.3:49869702-49869721 MS.gene84671:intron 40.0%
AAGAACAACCAGGACAGAGA+TGG - chr2.3:49869479-49869498 None:intergenic 45.0%
ACTCATGTGCATCTTGAACC+GGG - chr2.3:49871840-49871859 None:intergenic 45.0%
AGCGAAGGTTCGTTTGAGTA+CGG + chr2.3:49870192-49870211 MS.gene84671:CDS 45.0%
AGCTAGCAGTACTCTTGTTG+TGG - chr2.3:49871981-49872000 None:intergenic 45.0%
ATAAGGAAATTGGGTCGCTG+AGG - chr2.3:49870003-49870022 None:intergenic 45.0%
CATGCCTTCAATTGGAATGC+AGG - chr2.3:49869569-49869588 None:intergenic 45.0%
CCAAAGCAAACACATCAGAC+GGG - chr2.3:49869867-49869886 None:intergenic 45.0%
CGGTAACTACTGGAAAGAAG+TGG + chr2.3:49870212-49870231 MS.gene84671:CDS 45.0%
CGTTTGAGTACGGTAACTAC+TGG + chr2.3:49870202-49870221 MS.gene84671:CDS 45.0%
CTCTGGACGTTATGATCTGA+AGG + chr2.3:49870904-49870923 MS.gene84671:CDS 45.0%
GACACCTGCATTCCAATTGA+AGG + chr2.3:49869562-49869581 MS.gene84671:intron 45.0%
GACAGGGTCGTAACAATTCA+TGG + chr2.3:49871796-49871815 MS.gene84671:intron 45.0%
GATGAAGCTCGTAAGAACTG+AGG - chr2.3:49871944-49871963 None:intergenic 45.0%
TCAGATCATAACGTCCAGAG+AGG - chr2.3:49870904-49870923 None:intergenic 45.0%
TTTCCTTCAAGGGAAAGCGA+AGG + chr2.3:49870177-49870196 MS.gene84671:intron 45.0%
TTTCTGTGTCATGATGCAGG+AGG + chr2.3:49870824-49870843 MS.gene84671:intron 45.0%
! AGCTTGTGGGTTTTCCTTCA+AGG + chr2.3:49870166-49870185 MS.gene84671:intron 45.0%
! GCTTGTGGGTTTTCCTTCAA+GGG + chr2.3:49870167-49870186 MS.gene84671:intron 45.0%
! TTTGGACTACCGTGTTACTG+AGG + chr2.3:49871255-49871274 MS.gene84671:CDS 45.0%
!! CCCAAAGTTTGCTAGGATGA+TGG + chr2.3:49870786-49870805 MS.gene84671:intron 45.0%
!!! GCTTTTTAGTGGGGTATTGG+GGG + chr2.3:49869703-49869722 MS.gene84671:intron 45.0%
!!! TTTTTTTTTCTATTATATAT+AGG + chr2.3:49869106-49869125 MS.gene84671:intron 5.0%
AAGCAAACACATCAGACGGG+CGG - chr2.3:49869864-49869883 None:intergenic 50.0%
ACTGAACCTTGCTGCTGCAT+TGG + chr2.3:49869142-49869161 MS.gene84671:CDS 50.0%
CACGCTGACATGCCTTCAAT+TGG - chr2.3:49869577-49869596 None:intergenic 50.0%
CCCGTCTGATGTGTTTGCTT+TGG + chr2.3:49869864-49869883 MS.gene84671:intron 50.0%
CCTTGCTGCTGCATTGGAAA+AGG + chr2.3:49869148-49869167 MS.gene84671:CDS 50.0%
CGTGTGATCCGTGCAATTGT+TGG + chr2.3:49870276-49870295 MS.gene84671:CDS 50.0%
GAACCTTCGCTTTCCCTTGA+AGG - chr2.3:49870183-49870202 None:intergenic 50.0%
GGACGTTATGATCTGAAGGC+AGG + chr2.3:49870908-49870927 MS.gene84671:CDS 50.0%
GTGACATCGACACACACATC+TGG + chr2.3:49869594-49869613 MS.gene84671:intron 50.0%
TGCAGGTGTCAGTGCTATGT+AGG - chr2.3:49869552-49869571 None:intergenic 50.0%
TGGATATAGGCGTGGATCAC+TGG + chr2.3:49869789-49869808 MS.gene84671:intron 50.0%
! CCTTTTCCAATGCAGCAGCA+AGG - chr2.3:49869151-49869170 None:intergenic 50.0%
AGACCAAGCCATCTCTGTCC+TGG + chr2.3:49869468-49869487 MS.gene84671:intron 55.0%
CAACCAGGACAGAGATGGCT+TGG - chr2.3:49869474-49869493 None:intergenic 55.0%
GAACACACTGGACACGACAC+TGG - chr2.3:49869657-49869676 None:intergenic 55.0%
GCGTTCACTAAGAGCCCGTT+TGG - chr2.3:49869335-49869354 None:intergenic 55.0%
!! GCAGGCATTGAAGAACGCCT+TGG + chr2.3:49870926-49870945 MS.gene84671:CDS 55.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 49868773 49872002 49868773 ID=MS.gene84671
chr2.3 mRNA 49868773 49872002 49868773 ID=MS.gene84671.t1;Parent=MS.gene84671
chr2.3 exon 49868773 49868797 49868773 ID=MS.gene84671.t1.exon1;Parent=MS.gene84671.t1
chr2.3 CDS 49868773 49868797 49868773 ID=cds.MS.gene84671.t1;Parent=MS.gene84671.t1
chr2.3 exon 49868885 49869015 49868885 ID=MS.gene84671.t1.exon2;Parent=MS.gene84671.t1
chr2.3 CDS 49868885 49869015 49868885 ID=cds.MS.gene84671.t1;Parent=MS.gene84671.t1
chr2.3 exon 49869128 49869210 49869128 ID=MS.gene84671.t1.exon3;Parent=MS.gene84671.t1
chr2.3 CDS 49869128 49869210 49869128 ID=cds.MS.gene84671.t1;Parent=MS.gene84671.t1
chr2.3 exon 49870188 49870309 49870188 ID=MS.gene84671.t1.exon4;Parent=MS.gene84671.t1
chr2.3 CDS 49870188 49870309 49870188 ID=cds.MS.gene84671.t1;Parent=MS.gene84671.t1
chr2.3 exon 49870843 49871007 49870843 ID=MS.gene84671.t1.exon5;Parent=MS.gene84671.t1
chr2.3 CDS 49870843 49871007 49870843 ID=cds.MS.gene84671.t1;Parent=MS.gene84671.t1
chr2.3 exon 49871251 49871344 49871251 ID=MS.gene84671.t1.exon6;Parent=MS.gene84671.t1
chr2.3 CDS 49871251 49871344 49871251 ID=cds.MS.gene84671.t1;Parent=MS.gene84671.t1
chr2.3 exon 49871801 49872002 49871801 ID=MS.gene84671.t1.exon7;Parent=MS.gene84671.t1
chr2.3 CDS 49871801 49872002 49871801 ID=cds.MS.gene84671.t1;Parent=MS.gene84671.t1
Gene Sequence

>MS.gene84671

ATGTCACTAGCTTCACAAAATCCATGTTAGTTTCTTACATTCAATATAAAAAAAAATTTTAAAAATAATAATTGATGAATGATTTATTATTATTTTTTATTTGTTTTTGTAGCTAATGAGCATCATCAAAGAATCATAATACCCAACAAAAGTGGTGAAAAACTTGTTGGAATATTACATGAATGTTCTGGAACAACAACCAACGACATTGTTATCTTATGTCATGGTTTTCGATGCTCTAAAGTTTGTTCCTTTCTTCTTCTTCTTCTTCTTTTTTTTTTTTTTTTTTCTTTTTTACTTAATTTATGAATAAATTCTTTTACTAATTTGTATTTTTTTTTTCTATTATATATAGGATATCAATCTCATACTGAACCTTGCTGCTGCATTGGAAAAGGAACAAATTAGTTCTTTCCGTTTTGACTTTTCTGGAAATGGGTATGTTTATGATGATTTAGTGTCCGTATGGATTGACTTATTTTTGAGCTTATGCAAAACAGCTTATGAAGATACAATTTTCGTTAGTTATTTATTTACATAAGCTAAAATATAAGTCAATCCAAACGGGCTCTTAGTGAACGCAACCATATTAACTGAATATTCATTTTGACTACATTTTGATATATAGTCAATCGCATTCTAAATGTTTGTGAAATTGTCTCTAAAATTGATTTATACTGCAAAATGATAGGCTAAGACCAAGCCATCTCTGTCCTGGTTGTTCTTTTTGAAGGGTGTATATTTTTAGGATTGATGTGATTTCATGTGGTTTATGACCTACATAGCACTGACACCTGCATTCCAATTGAAGGCATGTCAGCGTGACATCGACACACACATCTGGTTACATTCAGTTATTCCATTTTTTTCTCAAATTATTACCAGTGTCGTGTCCAGTGTGTTCTTTATAGTCTACAATTTTGAACTTATGCTTTTTAGTGGGGTATTGGGGGAGTTGATAATAGCCGAAAGATGATTAATTGGTTTACTTAAAGCATTTGCCTATGTTTTGAGTTTGGATATAGGCGTGGATCACTGGATGAATGAACTGAATCATATGGTAGTATGATCACTAAAATAGTGTGTTTCCGCCCGTCTGATGTGTTTGCTTTGGTTTGCTGATGTTATTTATACTTATTTATCATAATTATCTAATGTTGTTATTACTCTTACAGTTCTGGTTTTTAGTTTAGGATTATTGGTTTAGTTGTAGTACTATTGTACTATCCTCAGCGACCCAATTTCCTTATCATTTTATCATGGTATTAGATGACAATTCCTTTTCCAAAATTGGGTAGTATTTTCCTCATGTACAATAAATTTATGTACTAAAGTCTATGCTATCTTGTTTTCATCATTTGCCTTGCTTCATTCTTTGCTTTCTCTTAACTTTAGCTTGTGGGTTTTCCTTCAAGGGAAAGCGAAGGTTCGTTTGAGTACGGTAACTACTGGAAAGAAGTGGATGATTTACATGCTGTTGCTCAACATTTCCGTGAATCAAATCGTGTGATCCGTGCAATTGTTGGACATAGTAAAGGTATATTGGTTTGTTTGCTTATATTGAAGTATTTTAAGCAACATGAAGATGTTAAGTTATGGTTTTGGATATATGATTATGTGCTCCAATTTATACTATCATTCATTGCTAATTTTCCATTATACACCTCAATTATGACAAGAAGTATCGTTATAAAAATATTTTGTCAACCATACTTTGCATGTTAAGATTGCAATGTTGAATGATGCTTTATGAAGAGATTTGCGTAACTTCTGGCAAAAAACATACACCAGGAATGAGCTTTCATTTATCTGATATATAGCTTCTAGCATGAGATTTGTCAATAAGTCGAAAGTTACTATTCTACAAATGAACTTCATTTGCAAAACCATGCTAAAATTGAACTTCATCATTATCCTTCATTTTAACAAATAGGTATTCTATAGATCTCTATAATGATATTTGTTGGTGTAGCTTCTGATCAATCCATTTTCTCAAATTCTTATGTACTTTCACCCAAAGTTTGCTAGGATGATGGAACTGTTAACAGTTGTTTCTGTGTCATGATGCAGGAGGTGATGTAGTCCTTCTGTATGCTTCCAAATATCACGACATTAAAACTGTTGTTAACCTCTCTGGACGTTATGATCTGAAGGCAGGCATTGAAGAACGCCTTGGCAAAGATTATTTGAAAAGAATTAGGAAGGACGGTTTCTTTGATGTGAAGAGGAGTTCAGGTAAATCGTTTACTCAGGCTAAAAATATCACAAGTACAAAGTTCGAGTTAGACATTGATCGTGAACTGTCTTGTTCAATAACTGTAAAATGACTTGAGTTTAGAACTTTAGAATTCAAATGGATTTCCTTTATGGATAATGAAAATTGACAAGTTCTTTGTTTCAGTCTCTATCACTTACACATGAGCATTGTATTAATTTGGTATTCATTAAATGATCATTTAAGGACACATACTGTTGCAGGAAATTTGGACTACCGTGTTACTGAGGAAAGTTTGATGGATCGCTTGAGTACAAATATGCATGAAGCGTGCCTGCAGATTGACAAAGATTGCAGGTTAATGGAAAACCTGTTTGATCTCTTCTCCTTTTACTGCTAGCTCCATTCTTTGTTGTTCAAGCATGCGTCGACGTTGAAATATCACAATAATATTTCTACAATAGAAGCAATAAAAAACATGATATCTCTCAATTCTGATTATTCTTTCATTACAATTACGTGCAATTTAACTACAACATTTCCATACTTTTTTTAAAAACTTATACTTATCACGTAATCTTGTAACTAAGTTTGATTTTAATACCTACCTGTTTGTTTTCAAAGTAATCATTGTAAATAATACAAAATAATGCTTTTAAGATATTCAAGTTTCTTTAAATAATTGAAATAGTGCTACATATGATATACGGCGAAGGAGCAGAGAAGACTGCAAGCAACAATTCTTGAACTTATCAAGTTACATTGATGCATATGATATATACTGCTGATGCCAAGCTACATCATATATGACAGGGTCGTAACAATTCATGGTTCTTCTGACGAAATTATCCCGGTTCAAGATGCACATGAGTTTGCTAAGATCATACCAAATCACAAGTTACATATCATTGAAGGAGCTGATCATGCATACAATAATCATCAAGATGAGTTATCCTCAGTTCTTACGAGCTTCATCAAGGAAACCATTGACCACAACAAGAGTACTGCTAGCTAG
Protein sequence

>MS.gene84671.t1

MSLASQNPSNEHHQRIIIPNKSGEKLVGILHECSGTTTNDIVILCHGFRCSKDINLILNLAAALEKEQISSFRFDFSGNGESEGSFEYGNYWKEVDDLHAVAQHFRESNRVIRAIVGHSKGGDVVLLYASKYHDIKTVVNLSGRYDLKAGIEERLGKDYLKRIRKDGFFDVKRSSGNLDYRVTEESLMDRLSTNMHEACLQIDKDCRVVTIHGSSDEIIPVQDAHEFAKIIPNHKLHIIEGADHAYNNHQDELSSVLTSFIKETIDHNKSTAS