AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene026088

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026088.t1 MTR_2g039570 94.717 265 14 0 6 270 1 265 0.0 518
MS.gene026088.t1 MTR_2g039510 81.609 261 46 1 12 270 13 273 4.44e-161 448
MS.gene026088.t1 MTR_2g039480 74.532 267 66 1 6 270 3 269 1.48e-146 411
MS.gene026088.t1 MTR_4g126050 69.732 261 77 2 8 268 64 322 8.17e-133 378
MS.gene026088.t1 MTR_2g039450 69.434 265 77 1 6 266 3 267 1.93e-132 377
MS.gene026088.t1 MTR_4g126120 62.214 262 98 1 1 262 1 261 9.98e-124 353
MS.gene026088.t1 MTR_4g126120 64.800 250 87 1 13 262 22 270 1.52e-123 353
MS.gene026088.t1 MTR_1g016050 59.109 247 100 1 13 259 8 253 3.84e-104 304
MS.gene026088.t1 MTR_4g126050 70.857 175 49 2 8 182 64 236 1.96e-85 255
MS.gene026088.t1 MTR_1g016060 43.407 182 82 2 88 268 467 628 2.99e-34 130
MS.gene026088.t1 MTR_2g039550 59.740 77 7 1 1 77 18 70 1.97e-22 88.2
MS.gene026088.t1 MTR_4g124530 50.943 53 23 1 118 167 14 66 8.99e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026088.t1 AT3G47590 62.934 259 93 2 7 265 53 308 6.87e-119 343
MS.gene026088.t1 AT1G29840 59.245 265 105 2 1 265 50 311 1.12e-114 332
MS.gene026088.t1 AT3G47560 60.232 259 97 3 1 259 1 253 3.20e-112 324
MS.gene026088.t1 AT3G47560 60.232 259 97 3 1 259 37 289 2.73e-111 323
MS.gene026088.t1 AT5G11910 58.915 258 105 1 2 259 29 285 1.07e-109 320
MS.gene026088.t1 AT5G11910 58.915 258 105 1 2 259 11 267 1.11e-109 319
MS.gene026088.t1 AT3G47560 55.124 283 99 3 1 259 1 279 4.07e-108 315
MS.gene026088.t1 AT3G47560 54.545 286 97 4 1 259 1 280 1.75e-105 308
MS.gene026088.t1 AT3G47560 50.323 310 99 4 1 259 1 306 1.45e-101 299
MS.gene026088.t1 AT2G19550 55.512 254 103 6 14 262 5 253 1.67e-95 284
MS.gene026088.t1 AT3G47590 64.198 162 57 1 7 168 53 213 5.94e-73 223
MS.gene026088.t1 AT5G11910 58.940 151 61 1 2 152 11 160 3.93e-59 186
MS.gene026088.t1 AT5G11910 59.603 151 60 1 2 152 29 178 4.14e-59 186

Find 52 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGGCTTGGTAAAGATTATT+TGG 0.180472 2.2:+47897512 MS.gene026088:CDS
ATCTACTGTTGCAGGAAGTT+TGG 0.288735 2.2:+47897823 MS.gene026088:intron
CGTTCCAGTATGGTAACTAT+TGG 0.315195 2.2:+47895947 MS.gene026088:CDS
GGAAACCATTGACCACAATA+AGG 0.339836 2.2:+47898219 MS.gene026088:CDS
GTTCCAGTATGGTAACTATT+GGG 0.346161 2.2:+47895948 MS.gene026088:CDS
CGTGTAATCCGTGCAATTGT+TGG 0.348094 2.2:+47896021 MS.gene026088:CDS
ATGATATGCAACTTGTGATT+TGG 0.362877 2.2:-47898127 None:intergenic
CTCTGGACGTTATGATCTTA+AGG 0.406623 2.2:+47897476 MS.gene026088:CDS
AACTCATGCGCACTTTGAAC+GGG 0.412700 2.2:-47898091 None:intergenic
GTTGAACCTTGTTGCTGCAT+TGG 0.422568 2.2:+47895342 MS.gene026088:CDS
AGTACCCTTATTGTGGTCAA+TGG 0.432514 2.2:-47898224 None:intergenic
TAACTATTGGGGAGAGGTGG+AGG 0.437011 2.2:+47895960 MS.gene026088:CDS
ATTGATGTGAAGACGAAGTC+AGG 0.444727 2.2:+47897558 MS.gene026088:CDS
AGCGAAGGTTCGTTCCAGTA+TGG 0.446124 2.2:+47895937 MS.gene026088:CDS
TTGGAAAGAATTACAAATGA+GGG 0.447588 2.2:+47897531 MS.gene026088:CDS
TTTGGATTACCGTGTTACTA+AGG 0.456099 2.2:+47897841 MS.gene026088:CDS
AAAACTGTTGTCAACCTCTC+TGG 0.459812 2.2:+47897459 MS.gene026088:CDS
GGCAGGGTCCTTACAGTTCA+CGG 0.470147 2.2:+47898049 MS.gene026088:intron
AAACTCATGCGCACTTTGAA+CGG 0.478131 2.2:-47898092 None:intergenic
GAAACCATTGACCACAATAA+GGG 0.482098 2.2:+47898220 MS.gene026088:CDS
CCTTGTTGCTGCATTGGAAA+AGG 0.484553 2.2:+47895348 MS.gene026088:CDS
CTCCCCAATAGTTACCATAC+TGG 0.488293 2.2:-47895951 None:intergenic
AACAAGGTTCAACATGAGAT+TGG 0.492861 2.2:-47895332 None:intergenic
TTTGGAAAGAATTACAAATG+AGG 0.495780 2.2:+47897530 MS.gene026088:CDS
CAATAAGGGTACTGTTAGCT+AGG 0.496770 2.2:+47898234 MS.gene026088:CDS
GGAAAGTTTAATAGATCGCA+TGG 0.498288 2.2:+47897862 MS.gene026088:CDS
GACATTGTTATCTTATGTCA+TGG 0.499984 2.2:+47895193 MS.gene026088:CDS
TACTATGTCCAACAATTGCA+CGG 0.505039 2.2:-47896029 None:intergenic
CAGAAGAACCGTGAACTGTA+AGG 0.532860 2.2:-47898057 None:intergenic
GCAATTGTTGGACATAGTAA+AGG 0.544207 2.2:+47896033 MS.gene026088:CDS
GGACGTTATGATCTTAAGGC+AGG 0.563242 2.2:+47897480 MS.gene026088:CDS
AGCTGTCATGAGCTTCATCA+AGG 0.564130 2.2:+47898198 MS.gene026088:CDS
CGTTTCCAGAAAAGTCAAAA+CGG 0.569451 2.2:-47895387 None:intergenic
GTTGGTATATTAGTTGAATG+TGG 0.573491 2.2:+47895160 MS.gene026088:CDS
TGGTAACTATTGGGGAGAGG+TGG 0.578432 2.2:+47895957 MS.gene026088:CDS
GGTATTATCACTCTCTGATG+AGG 0.579146 2.2:-47895115 None:intergenic
ACATAAGATAACAATGTCGT+TGG 0.580798 2.2:-47895188 None:intergenic
TTAAGGCAGGCATCGAAGAA+CGG 0.583390 2.2:+47897493 MS.gene026088:CDS
GCAGGCATCGAAGAACGGCT+TGG 0.591925 2.2:+47897498 MS.gene026088:CDS
TACAGATTGACAAAGAATGC+AGG 0.592169 2.2:+47897909 MS.gene026088:CDS
TTCCAGTATGGTAACTATTG+GGG 0.594109 2.2:+47895949 MS.gene026088:CDS
TGCATTCTTTGTCAATCTGT+AGG 0.604687 2.2:-47897907 None:intergenic
GTATGGTAACTATTGGGGAG+AGG 0.614685 2.2:+47895954 MS.gene026088:CDS
AAGTGCGCATGAGTTTGCTA+AGG 0.615609 2.2:+47898099 MS.gene026088:CDS
AGCTAACAGTACCCTTATTG+TGG 0.617553 2.2:-47898231 None:intergenic
GTGATAATACCCAACAAGCG+CGG 0.627473 2.2:+47895127 MS.gene026088:CDS
TTAAACTTTCCTTAGTAACA+CGG 0.639674 2.2:-47897850 None:intergenic
ACTCATGCGCACTTTGAACG+GGG 0.648849 2.2:-47898090 None:intergenic
GAAAGTTTAATAGATCGCAT+GGG 0.650642 2.2:+47897863 MS.gene026088:CDS
GATGAAGCTCATGACAGCTG+AGG 0.665402 2.2:-47898194 None:intergenic
TTACCTTCCAGGGAAAGCGA+AGG 0.669336 2.2:+47895922 MS.gene026088:intron
TAAGATCATAACGTCCAGAG+AGG 0.711327 2.2:-47897473 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTCAATTTTACTATATT+TGG + chr2.2:47895455-47895474 MS.gene026088:intron 10.0%
!!! TGATTATTTTTTTGTATATT+AGG + chr2.2:47895306-47895325 MS.gene026088:intron 10.0%
!! AATAATCAATGAAAATAATC+TGG - chr2.2:47895294-47895313 None:intergenic 15.0%
!! AATTGAATATTAACTCAATA+TGG - chr2.2:47895445-47895464 None:intergenic 15.0%
!! AGAAAATAGAATTATTGAAT+TGG + chr2.2:47895793-47895812 MS.gene026088:intron 15.0%
!! GAAAATAGAATTATTGAATT+GGG + chr2.2:47895794-47895813 MS.gene026088:intron 15.0%
!! GATCAATTAAAATCAATAAA+TGG - chr2.2:47895520-47895539 None:intergenic 15.0%
!! AGAAAAATCAAGGTTAATTA+AGG - chr2.2:47896911-47896930 None:intergenic 20.0%
!! ATACTTAAGTCGAAATAAAA+AGG - chr2.2:47895249-47895268 None:intergenic 20.0%
!! CAATGAATGATTGTATAAAT+TGG - chr2.2:47896131-47896150 None:intergenic 20.0%
!! TGTTACATAGATTAAAACAA+AGG - chr2.2:47897755-47897774 None:intergenic 20.0%
!!! AGAATTCAGATAGATTTTAA+CGG + chr2.2:47897692-47897711 MS.gene026088:intron 20.0%
!!! AGTTTTAATGTCATGATATT+TGG - chr2.2:47897445-47897464 None:intergenic 20.0%
!!! CTTTTAAATAATGTGGATTT+CGG - chr2.2:47896790-47896809 None:intergenic 20.0%
!!! TGTATATCTAGATATGTTTT+TGG + chr2.2:47896088-47896107 MS.gene026088:intron 20.0%
!!! TTCTAGTCTTTTAAATAATG+TGG - chr2.2:47896797-47896816 None:intergenic 20.0%
! AAATTACATCATATATGGCA+GGG + chr2.2:47898033-47898052 MS.gene026088:intron 25.0%
! AAGCTGAGAAATATAGAAAA+TGG + chr2.2:47895595-47895614 MS.gene026088:intron 25.0%
! AATAGAATTATTGAATTGGG+TGG + chr2.2:47895797-47895816 MS.gene026088:intron 25.0%
! AGAAGTTTGGATAGAAAATT+AGG - chr2.2:47897164-47897183 None:intergenic 25.0%
! AGTCGAAATAAAAAGGAAAA+AGG - chr2.2:47895242-47895261 None:intergenic 25.0%
! ATAATGATCAAGTTCATATC+TGG - chr2.2:47897242-47897261 None:intergenic 25.0%
! ATGCCAAATTACATCATATA+TGG + chr2.2:47898028-47898047 MS.gene026088:intron 25.0%
! TAAGTTTATCAACGAAGAAA+TGG - chr2.2:47897979-47897998 None:intergenic 25.0%
! TCTTCATATTGCATTATTCA+AGG - chr2.2:47897074-47897093 None:intergenic 25.0%
! TTAAACTTTCCTTAGTAACA+CGG - chr2.2:47897853-47897872 None:intergenic 25.0%
! TTGGAAAGAATTACAAATGA+GGG + chr2.2:47897531-47897550 MS.gene026088:CDS 25.0%
! TTTGGAAAGAATTACAAATG+AGG + chr2.2:47897530-47897549 MS.gene026088:CDS 25.0%
!! GAATGTGTTTAACTTCAATT+TGG - chr2.2:47896356-47896375 None:intergenic 25.0%
!! TGGTAGAAACACTATATTTT+GGG - chr2.2:47897002-47897021 None:intergenic 25.0%
!!! GAATTCAGATAGATTTTAAC+GGG + chr2.2:47897693-47897712 MS.gene026088:intron 25.0%
AAGAGAGTTGTGTAATTTCT+GGG + chr2.2:47897090-47897109 MS.gene026088:intron 30.0%
AATATATGCATCCTTCCAAA+AGG - chr2.2:47895646-47895665 None:intergenic 30.0%
AATTATACTGACGAGAAAAG+TGG - chr2.2:47897029-47897048 None:intergenic 30.0%
ACATAAGATAACAATGTCGT+TGG - chr2.2:47895191-47895210 None:intergenic 30.0%
ATATATGCATCCTTCCAAAA+GGG - chr2.2:47895645-47895664 None:intergenic 30.0%
ATGATATGCAACTTGTGATT+TGG - chr2.2:47898130-47898149 None:intergenic 30.0%
CAAATTACATCATATATGGC+AGG + chr2.2:47898032-47898051 MS.gene026088:intron 30.0%
CAACCAAAGAAAATCATTCT+CGG - chr2.2:47896592-47896611 None:intergenic 30.0%
CAATGAAAATAATCTGGCAA+AGG - chr2.2:47895288-47895307 None:intergenic 30.0%
CATAGCTAACAATAAAGACA+AGG - chr2.2:47895863-47895882 None:intergenic 30.0%
CTGCCATATATGATGTAATT+TGG - chr2.2:47898034-47898053 None:intergenic 30.0%
GAAAGTTTAATAGATCGCAT+GGG + chr2.2:47897863-47897882 MS.gene026088:CDS 30.0%
GACATTGTTATCTTATGTCA+TGG + chr2.2:47895193-47895212 MS.gene026088:CDS 30.0%
GCATATATTCTTAGGATTGT+TGG + chr2.2:47895657-47895676 MS.gene026088:intron 30.0%
GTTGGTATATTAGTTGAATG+TGG + chr2.2:47895160-47895179 MS.gene026088:CDS 30.0%
TCAATTGGATAGGTAGATTT+GGG - chr2.2:47896761-47896780 None:intergenic 30.0%
! ACATTCAATCATTTTGCCAT+TGG + chr2.2:47896824-47896843 MS.gene026088:intron 30.0%
! CAATTTTCATTATCCGCAAT+GGG - chr2.2:47897726-47897745 None:intergenic 30.0%
! CTGGTAGAAACACTATATTT+TGG - chr2.2:47897003-47897022 None:intergenic 30.0%
! TCAATTTTCATTATCCGCAA+TGG - chr2.2:47897727-47897746 None:intergenic 30.0%
!! ACCATCACTGAAATTTTAAC+CGG + chr2.2:47896638-47896657 MS.gene026088:intron 30.0%
!! ATGGATTCTACAATTTTGAC+AGG + chr2.2:47894999-47895018 MS.gene026088:CDS 30.0%
!! TAGAAACACTATATTTTGGG+AGG - chr2.2:47896999-47897018 None:intergenic 30.0%
!!! AATGTTTGCAGCATCTTTTT+TGG - chr2.2:47896514-47896533 None:intergenic 30.0%
!!! TTGGAGTTTTAGTTTGGTTT+AGG - chr2.2:47896249-47896268 None:intergenic 30.0%
AAACCCACAAAGCTAAAGTT+AGG - chr2.2:47895904-47895923 None:intergenic 35.0%
AACAAGGTTCAACATGAGAT+TGG - chr2.2:47895335-47895354 None:intergenic 35.0%
ACTAAAACTCCAAACTCCAA+AGG + chr2.2:47896256-47896275 MS.gene026088:intron 35.0%
ACTAATCATTCACACCAAAC+GGG - chr2.2:47895715-47895734 None:intergenic 35.0%
AGCTAAGGAGAGAAAAATCA+AGG - chr2.2:47896921-47896940 None:intergenic 35.0%
AGGATATGTTTCATGAAGTG+AGG - chr2.2:47896891-47896910 None:intergenic 35.0%
AGGTTTATTGTACTGCAGAA+AGG - chr2.2:47896385-47896404 None:intergenic 35.0%
ATTGACAAAGAATGCAGGTT+AGG + chr2.2:47897914-47897933 MS.gene026088:intron 35.0%
CACTAATCATTCACACCAAA+CGG - chr2.2:47895716-47895735 None:intergenic 35.0%
CGTTTCCAGAAAAGTCAAAA+CGG - chr2.2:47895390-47895409 None:intergenic 35.0%
CTAATCTCATGCTAGAAGTT+TGG - chr2.2:47897177-47897196 None:intergenic 35.0%
CTCAATTGGATAGGTAGATT+TGG - chr2.2:47896762-47896781 None:intergenic 35.0%
GAAACCATTGACCACAATAA+GGG + chr2.2:47898220-47898239 MS.gene026088:CDS 35.0%
GAACTACACTGCAAATAGAT+AGG + chr2.2:47895568-47895587 MS.gene026088:intron 35.0%
GAAGAGAGTTGTGTAATTTC+TGG + chr2.2:47897089-47897108 MS.gene026088:intron 35.0%
GATATGTTTCATGAAGTGAG+GGG - chr2.2:47896889-47896908 None:intergenic 35.0%
GCAATTGTTGGACATAGTAA+AGG + chr2.2:47896033-47896052 MS.gene026088:CDS 35.0%
GGAAAGTTTAATAGATCGCA+TGG + chr2.2:47897862-47897881 MS.gene026088:CDS 35.0%
GGAAGGATGCATATATTCTT+AGG + chr2.2:47895649-47895668 MS.gene026088:intron 35.0%
GGATATGTTTCATGAAGTGA+GGG - chr2.2:47896890-47896909 None:intergenic 35.0%
GTTCCAGTATGGTAACTATT+GGG + chr2.2:47895948-47895967 MS.gene026088:CDS 35.0%
TAAGAATCGAGAGAATCGAT+TGG - chr2.2:47897328-47897347 None:intergenic 35.0%
TACAGATTGACAAAGAATGC+AGG + chr2.2:47897909-47897928 MS.gene026088:CDS 35.0%
TACTATGTCCAACAATTGCA+CGG - chr2.2:47896032-47896051 None:intergenic 35.0%
TGATCAAGTTCATATCTGGA+CGG - chr2.2:47897238-47897257 None:intergenic 35.0%
TGCATTCTTTGTCAATCTGT+AGG - chr2.2:47897910-47897929 None:intergenic 35.0%
TTCCAGTATGGTAACTATTG+GGG + chr2.2:47895949-47895968 MS.gene026088:CDS 35.0%
TTGACAAAGAATGCAGGTTA+GGG + chr2.2:47897915-47897934 MS.gene026088:intron 35.0%
! AATCGATTCTCTCGATTCTT+AGG + chr2.2:47897327-47897346 MS.gene026088:intron 35.0%
! ATCTCTTCTCCTTTTACTTC+TGG + chr2.2:47897951-47897970 MS.gene026088:intron 35.0%
! CGAGAATGATTTTCTTTGGT+TGG + chr2.2:47896590-47896609 MS.gene026088:intron 35.0%
! TCTCCGAGAATGATTTTCTT+TGG + chr2.2:47896586-47896605 MS.gene026088:intron 35.0%
! TTTGGATTACCGTGTTACTA+AGG + chr2.2:47897841-47897860 MS.gene026088:CDS 35.0%
!! ACGGCTTGGTAAAGATTATT+TGG + chr2.2:47897512-47897531 MS.gene026088:CDS 35.0%
!! ACTTTGTTTGCCTCTGTTTT+AGG - chr2.2:47896186-47896205 None:intergenic 35.0%
!! CCATCACTGAAATTTTAACC+GGG + chr2.2:47896639-47896658 MS.gene026088:intron 35.0%
!! TCTCCTAACTTTAGCTTTGT+GGG + chr2.2:47895898-47895917 MS.gene026088:intron 35.0%
!! TTCTCCTAACTTTAGCTTTG+TGG + chr2.2:47895897-47895916 MS.gene026088:intron 35.0%
!!! ACAAACATTTTGACTGCACA+TGG - chr2.2:47895542-47895561 None:intergenic 35.0%
!!! CGTTTTGACTTTTCTGGAAA+CGG + chr2.2:47895388-47895407 MS.gene026088:CDS 35.0%
!!! CTCTCATTTGTTTTTGTAGC+TGG + chr2.2:47895088-47895107 MS.gene026088:intron 35.0%
!!! GTTTTGACTTTTCTGGAAAC+GGG + chr2.2:47895389-47895408 MS.gene026088:CDS 35.0%
!!! TCTTTCCGTTTTGACTTTTC+TGG + chr2.2:47895382-47895401 MS.gene026088:CDS 35.0%
!!! TGGAGTTTGGAGTTTTAGTT+TGG - chr2.2:47896255-47896274 None:intergenic 35.0%
AAAACTGTTGTCAACCTCTC+TGG + chr2.2:47897459-47897478 MS.gene026088:CDS 40.0%
AAACTCATGCGCACTTTGAA+CGG - chr2.2:47898095-47898114 None:intergenic 40.0%
ACTTTGAACTTGAACCCGTT+TGG + chr2.2:47895698-47895717 MS.gene026088:intron 40.0%
AGCTAACAGTACCCTTATTG+TGG - chr2.2:47898234-47898253 None:intergenic 40.0%
AGTACCCTTATTGTGGTCAA+TGG - chr2.2:47898227-47898246 None:intergenic 40.0%
ATAGGTAGATTTGGGTGGAT+GGG - chr2.2:47896753-47896772 None:intergenic 40.0%
ATCTACTGTTGCAGGAAGTT+TGG + chr2.2:47897823-47897842 MS.gene026088:intron 40.0%
ATTATTCAAGGCTGCAAAGC+AGG - chr2.2:47897062-47897081 None:intergenic 40.0%
ATTGATGTGAAGACGAAGTC+AGG + chr2.2:47897558-47897577 MS.gene026088:CDS 40.0%
ATTGGATAGGTAGATTTGGG+TGG - chr2.2:47896758-47896777 None:intergenic 40.0%
CCCGGTTAAAATTTCAGTGA+TGG - chr2.2:47896642-47896661 None:intergenic 40.0%
CCTAGACAAATTTGCGTGAA+AGG - chr2.2:47897354-47897373 None:intergenic 40.0%
CCTTTCACGCAAATTTGTCT+AGG + chr2.2:47897351-47897370 MS.gene026088:intron 40.0%
CGTTCCAGTATGGTAACTAT+TGG + chr2.2:47895947-47895966 MS.gene026088:CDS 40.0%
CTCTGGACGTTATGATCTTA+AGG + chr2.2:47897476-47897495 MS.gene026088:CDS 40.0%
CTTTGGTTGGAAGTCTATCT+TGG + chr2.2:47896603-47896622 MS.gene026088:intron 40.0%
GAAATGGAGCCAGAAGTAAA+AGG - chr2.2:47897963-47897982 None:intergenic 40.0%
GCAAATTTGTCTAGGCTGAT+TGG + chr2.2:47897359-47897378 MS.gene026088:intron 40.0%
GGAAACCATTGACCACAATA+AGG + chr2.2:47898219-47898238 MS.gene026088:CDS 40.0%
GGAGAAGAGAGTTATTCCAA+TGG - chr2.2:47896843-47896862 None:intergenic 40.0%
GGATTTCGGAAAGACTCAAT+TGG - chr2.2:47896776-47896795 None:intergenic 40.0%
GGTATTATCACTCTCTGATG+AGG - chr2.2:47895118-47895137 None:intergenic 40.0%
GTCAATGTGAATGTCAACAC+AGG - chr2.2:47895754-47895773 None:intergenic 40.0%
TAAGATCATAACGTCCAGAG+AGG - chr2.2:47897476-47897495 None:intergenic 40.0%
TCCACACAAATAGCGCAATA+GGG + chr2.2:47896485-47896504 MS.gene026088:intron 40.0%
TCGGAAAGACTCAATTGGAT+AGG - chr2.2:47896771-47896790 None:intergenic 40.0%
TCTCGGAGAAACATGCTAAA+CGG - chr2.2:47896575-47896594 None:intergenic 40.0%
TGACAAAGAATGCAGGTTAG+GGG + chr2.2:47897916-47897935 MS.gene026088:intron 40.0%
TTATTCAAGGCTGCAAAGCA+GGG - chr2.2:47897061-47897080 None:intergenic 40.0%
TTGAGAACATCTACTGTTGC+AGG + chr2.2:47897815-47897834 MS.gene026088:intron 40.0%
TTTGCACAGCTTGTGCTTAA+TGG - chr2.2:47896162-47896181 None:intergenic 40.0%
! ATATCTGGACGGTTTTGCAA+AGG - chr2.2:47897227-47897246 None:intergenic 40.0%
! GAGCATTTAGAGCAACTTAC+AGG - chr2.2:47896405-47896424 None:intergenic 40.0%
! TAAGTTGCTCTAAATGCTCC+TGG + chr2.2:47896406-47896425 MS.gene026088:intron 40.0%
! TTAGTGTGCTATTCTGCTAC+TGG - chr2.2:47896286-47896305 None:intergenic 40.0%
!! CAGATAGATTTTAACGGGCA+AGG + chr2.2:47897698-47897717 MS.gene026088:intron 40.0%
!! TATATTTTGGGAGGAGCCTT+GGG - chr2.2:47896990-47897009 None:intergenic 40.0%
!! TTGTTTCTGTGTTGTGATGC+AGG + chr2.2:47897393-47897412 MS.gene026088:intron 40.0%
AACTCATGCGCACTTTGAAC+GGG - chr2.2:47898094-47898113 None:intergenic 45.0%
AAGGGCAATCCACACATAGA+TGG - chr2.2:47895627-47895646 None:intergenic 45.0%
AGCTGTCATGAGCTTCATCA+AGG + chr2.2:47898198-47898217 MS.gene026088:CDS 45.0%
AGTTCAATCTTGCAGTGGCT+CGG - chr2.2:47896466-47896485 None:intergenic 45.0%
CAATCCACACATAGATGGCA+TGG - chr2.2:47895622-47895641 None:intergenic 45.0%
CACTGAAAGACAGTTATGGC+AGG - chr2.2:47896955-47896974 None:intergenic 45.0%
CAGAAGAACCGTGAACTGTA+AGG - chr2.2:47898060-47898079 None:intergenic 45.0%
CAGGCTGTACATAGTAGCTA+AGG - chr2.2:47896936-47896955 None:intergenic 45.0%
CCTTGTTGCTGCATTGGAAA+AGG + chr2.2:47895348-47895367 MS.gene026088:CDS 45.0%
CGTGTAATCCGTGCAATTGT+TGG + chr2.2:47896021-47896040 MS.gene026088:CDS 45.0%
CTCCACACAAATAGCGCAAT+AGG + chr2.2:47896484-47896503 MS.gene026088:intron 45.0%
CTCCCCAATAGTTACCATAC+TGG - chr2.2:47895954-47895973 None:intergenic 45.0%
CTGTGCAAAGCCTAAAACAG+AGG + chr2.2:47896173-47896192 MS.gene026088:intron 45.0%
CTTTGTGGGTTTACCTTCCA+GGG + chr2.2:47895912-47895931 MS.gene026088:intron 45.0%
GATAGGTAGATTTGGGTGGA+TGG - chr2.2:47896754-47896773 None:intergenic 45.0%
GGACGTTATGATCTTAAGGC+AGG + chr2.2:47897480-47897499 MS.gene026088:CDS 45.0%
GTATGGTAACTATTGGGGAG+AGG + chr2.2:47895954-47895973 MS.gene026088:CDS 45.0%
GTGATAATACCCAACAAGCG+CGG + chr2.2:47895127-47895146 MS.gene026088:CDS 45.0%
GTTGAACCTTGTTGCTGCAT+TGG + chr2.2:47895342-47895361 MS.gene026088:CDS 45.0%
TGTGGAGTTCAATCTTGCAG+TGG - chr2.2:47896471-47896490 None:intergenic 45.0%
TGTTCAGTGCATTCAGAACC+CGG - chr2.2:47896660-47896679 None:intergenic 45.0%
TGTTTCATGAAGTGAGGGGT+TGG - chr2.2:47896885-47896904 None:intergenic 45.0%
TTTCTGTGTTGTGATGCAGG+AGG + chr2.2:47897396-47897415 MS.gene026088:intron 45.0%
! CCTTTTCCAATGCAGCAACA+AGG - chr2.2:47895351-47895370 None:intergenic 45.0%
! TCAACAGCTTTTGCAGCTGA+AGG - chr2.2:47896432-47896451 None:intergenic 45.0%
!! AAGTGCGCATGAGTTTGCTA+AGG + chr2.2:47898099-47898118 MS.gene026088:CDS 45.0%
!! ACTGGTTTGCCTTTGGAGTT+TGG - chr2.2:47896268-47896287 None:intergenic 45.0%
!! CTATATTTTGGGAGGAGCCT+TGG - chr2.2:47896991-47897010 None:intergenic 45.0%
!! CTATGTGTGGATTGCCCTTT+TGG + chr2.2:47895628-47895647 MS.gene026088:intron 45.0%
!! GGAGCACTGAAAGACAGTTA+TGG - chr2.2:47896959-47896978 None:intergenic 45.0%
!! TTAAGGCAGGCATCGAAGAA+CGG + chr2.2:47897493-47897512 MS.gene026088:CDS 45.0%
!! TTCTGCTACTGGTTTGCCTT+TGG - chr2.2:47896275-47896294 None:intergenic 45.0%
ACTCATGCGCACTTTGAACG+GGG - chr2.2:47898093-47898112 None:intergenic 50.0%
AGCGAAGGTTCGTTCCAGTA+TGG + chr2.2:47895937-47895956 MS.gene026088:CDS 50.0%
ATTCAGTGTGCCTTCTGCAG+TGG - chr2.2:47896545-47896564 None:intergenic 50.0%
GATGAAGCTCATGACAGCTG+AGG - chr2.2:47898197-47898216 None:intergenic 50.0%
GCCCTATTGCGCTATTTGTG+TGG - chr2.2:47896489-47896508 None:intergenic 50.0%
GCTTTGTGGGTTTACCTTCC+AGG + chr2.2:47895911-47895930 MS.gene026088:intron 50.0%
GTAGATTTGGGTGGATGGGA+GGG - chr2.2:47896749-47896768 None:intergenic 50.0%
TAACTATTGGGGAGAGGTGG+AGG + chr2.2:47895960-47895979 MS.gene026088:CDS 50.0%
TAGATTTGGGTGGATGGGAG+GGG - chr2.2:47896748-47896767 None:intergenic 50.0%
TGGACCATGCCATCTATGTG+TGG + chr2.2:47895615-47895634 MS.gene026088:intron 50.0%
TGGTAACTATTGGGGAGAGG+TGG + chr2.2:47895957-47895976 MS.gene026088:CDS 50.0%
TGTGATCACTGTGGAAAGCG+AGG - chr2.2:47896323-47896342 None:intergenic 50.0%
TTACCTTCCAGGGAAAGCGA+AGG + chr2.2:47895922-47895941 MS.gene026088:intron 50.0%
TTCAGTGTGCCTTCTGCAGT+GGG - chr2.2:47896544-47896563 None:intergenic 50.0%
TTGCAAGCGTGTGATCACTG+TGG - chr2.2:47896332-47896351 None:intergenic 50.0%
! AGTTTTTCGCCGCGCTTGTT+GGG - chr2.2:47895139-47895158 None:intergenic 50.0%
!! GTGTGGATTGCCCTTTTGGA+AGG + chr2.2:47895632-47895651 MS.gene026088:intron 50.0%
AACGGGCAAGGTTCCCATTG+CGG + chr2.2:47897710-47897729 MS.gene026088:intron 55.0%
AAGCGCGGCGAAAAACTCGT+TGG + chr2.2:47895142-47895161 MS.gene026088:CDS 55.0%
AAGTGAGGGGTTGGAGAGTG+TGG - chr2.2:47896876-47896895 None:intergenic 55.0%
AGATTTGGGTGGATGGGAGG+GGG - chr2.2:47896747-47896766 None:intergenic 55.0%
AGTGCTCCACCATCTACCCA+AGG + chr2.2:47896971-47896990 MS.gene026088:intron 55.0%
CTGACGAGAAAAGTGGCTGC+TGG - chr2.2:47897022-47897041 None:intergenic 55.0%
GAACCTTCGCTTTCCCTGGA+AGG - chr2.2:47895928-47895947 None:intergenic 55.0%
GAACGAACCTTCGCTTTCCC+TGG - chr2.2:47895932-47895951 None:intergenic 55.0%
GGCAGGGTCCTTACAGTTCA+CGG + chr2.2:47898049-47898068 MS.gene026088:intron 55.0%
GGTAGATTTGGGTGGATGGG+AGG - chr2.2:47896750-47896769 None:intergenic 55.0%
TCAGTGTGCCTTCTGCAGTG+GGG - chr2.2:47896543-47896562 None:intergenic 55.0%
TTGCTCTTCCCCACTGCAGA+AGG + chr2.2:47896532-47896551 MS.gene026088:intron 55.0%
! AGCTTTTGCAGCTGAAGGCC+AGG - chr2.2:47896427-47896446 None:intergenic 55.0%
! GAGTTTTTCGCCGCGCTTGT+TGG - chr2.2:47895140-47895159 None:intergenic 55.0%
! GGAGAGTGTGGTTGTGGGAT+TGG - chr2.2:47896864-47896883 None:intergenic 55.0%
! GGGTTGGAGAGTGTGGTTGT+GGG - chr2.2:47896869-47896888 None:intergenic 55.0%
!! TGGATGGGAGGGGGAGTATT+CGG - chr2.2:47896738-47896757 None:intergenic 55.0%
GAGGAGCCTTGGGTAGATGG+TGG - chr2.2:47896980-47896999 None:intergenic 60.0%
TGGGAGGAGCCTTGGGTAGA+TGG - chr2.2:47896983-47897002 None:intergenic 60.0%
! GGGGTTGGAGAGTGTGGTTG+TGG - chr2.2:47896870-47896889 None:intergenic 60.0%
!! GCAGGCATCGAAGAACGGCT+TGG + chr2.2:47897498-47897517 MS.gene026088:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 47894999 47898255 47894999 ID=MS.gene026088
chr2.2 mRNA 47894999 47898255 47894999 ID=MS.gene026088.t1;Parent=MS.gene026088
chr2.2 exon 47894999 47895020 47894999 ID=MS.gene026088.t1.exon1;Parent=MS.gene026088.t1
chr2.2 CDS 47894999 47895020 47894999 ID=cds.MS.gene026088.t1;Parent=MS.gene026088.t1
chr2.2 exon 47895107 47895231 47895107 ID=MS.gene026088.t1.exon2;Parent=MS.gene026088.t1
chr2.2 CDS 47895107 47895231 47895107 ID=cds.MS.gene026088.t1;Parent=MS.gene026088.t1
chr2.2 exon 47895328 47895410 47895328 ID=MS.gene026088.t1.exon3;Parent=MS.gene026088.t1
chr2.2 CDS 47895328 47895410 47895328 ID=cds.MS.gene026088.t1;Parent=MS.gene026088.t1
chr2.2 exon 47895933 47896054 47895933 ID=MS.gene026088.t1.exon4;Parent=MS.gene026088.t1
chr2.2 CDS 47895933 47896054 47895933 ID=cds.MS.gene026088.t1;Parent=MS.gene026088.t1
chr2.2 exon 47897415 47897579 47897415 ID=MS.gene026088.t1.exon5;Parent=MS.gene026088.t1
chr2.2 CDS 47897415 47897579 47897415 ID=cds.MS.gene026088.t1;Parent=MS.gene026088.t1
chr2.2 exon 47897837 47897930 47897837 ID=MS.gene026088.t1.exon6;Parent=MS.gene026088.t1
chr2.2 CDS 47897837 47897930 47897837 ID=cds.MS.gene026088.t1;Parent=MS.gene026088.t1
chr2.2 exon 47898054 47898255 47898054 ID=MS.gene026088.t1.exon7;Parent=MS.gene026088.t1
chr2.2 CDS 47898054 47898255 47898054 ID=cds.MS.gene026088.t1;Parent=MS.gene026088.t1
Gene Sequence

>MS.gene026088

ATGGATTCTACAATTTTGACAGGTATATTTACATTCTTGTTTGATATTACATGTGATACATTGTATCTATCTATCTATCTTTACATAATCTCTCATTTGTTTTTGTAGCTGGTCAGCCTCATCAGAGAGTGATAATACCCAACAAGCGCGGCGAAAAACTCGTTGGTATATTAGTTGAATGTGGAGCAACCAACGACATTGTTATCTTATGTCATGGCTTTCGTTGCACTAAAGTTTGTTCCTTTTTCCTTTTTATTTCGACTTAAGTATTATTCTAAAGTTTGTTCCTTTGCCAGATTATTTTCATTGATTATTTTTTTGTATATTAGGATACCAATCTCATGTTGAACCTTGTTGCTGCATTGGAAAAGGCACAGATTACTTCTTTCCGTTTTGACTTTTCTGGAAACGGGTATGTTTATTTATGATGATGCATAACACAACCATATTGAGTTAATATTCAATTTTACTATATTTGGATGTATAGAGATCGATGATGAAATATGTGTTATTTGATTCCATTTATTGATTTTAATTGATCCATGTGCAGTCAAAATGTTTGTGAAATTGAACTACACTGCAAATAGATAGGCTAAAAGCTGAGAAATATAGAAAATGGACCATGCCATCTATGTGTGGATTGCCCTTTTGGAAGGATGCATATATTCTTAGGATTGTTGGTATTTCATATAGTTTATAACTTTGAACTTGAACCCGTTTGGTGTGAATGATTAGTGCAATTAAAGCATATACCTGTGTTGACATTCACATTGACTCGTTGACACTAGTATTTGAGAAAATAGAATTATTGAATTGGGTGGTATTTTTCTTCATGTACACTGAAGTTTCTGAAGTCTGATACCTTGTCTTTATTGTTAGCTATGCTTCATTTTTTGCTTTCTCCTAACTTTAGCTTTGTGGGTTTACCTTCCAGGGAAAGCGAAGGTTCGTTCCAGTATGGTAACTATTGGGGAGAGGTGGAGGAATTACACGCTGTTGTTCAACATTTTCGTGAATCAAATCGTGTAATCCGTGCAATTGTTGGACATAGTAAAGGTATCTTGATTTGTTTGCTTTTATGAAAAAAAATGTATATCTAGATATGTTTTTGGATATGTGATTATATGTGCCAATTTATACAATCATTCATTGATCATTTTCCATTAAGCACAAGCTGTGCAAAGCCTAAAACAGAGGCAAACAAAGTCTGATACAATTAAACACAACACAATTGAGAACAAATGACACCTAAACCAAACTAAAACTCCAAACTCCAAAGGCAAACCAGTAGCAGAATAGCACACTAAACAATATATTTGTTCCTCGCTTTCCACAGTGATCACACGCTTGCAAACCAAATTGAAGTTAAACACATTCTGAATACCTTTCTGCAGTACAATAAACCTGTAAGTTGCTCTAAATGCTCCTGGCCTTCAGCTGCAAAAGCTGTTGAGTGTTGAAACACCGAGCCACTGCAAGATTGAACTCCACACAAATAGCGCAATAGGGCAGCCAAAAAAGATGCTGCAAACATTGCTCTTCCCCACTGCAGAAGGCACACTGAATGTGATCACCGTTTAGCATGTTTCTCCGAGAATGATTTTCTTTGGTTGGAAGTCTATCTTGGAGTAATCTCTAAACCATCACTGAAATTTTAACCGGGTTCTGAATGCACTGAACATAATTGTTATTCAAGATAAGAGAATTCTTAGTTAATCTATCGCACGCTTTCTTAACCGAATACTCCCCCTCCCATCCACCCAAATCTACCTATCCAATTGAGTCTTTCCGAAATCCACATTATTTAAAAGACTAGAACATTCTAACATTCAATCATTTTGCCATTGGAATAACTCTCTTCTCCAATCCCACAACCACACTCTCCAACCCCTCACTTCATGAAACATATCCTTAATTAACCTTGATTTTTCTCTCCTTAGCTACTATGTACAGCCTGCCATAACTGTCTTTCAGTGCTCCACCATCTACCCAAGGCTCCTCCCAAAATATAGTGTTTCTACCAGCAGCCACTTTTCTCGTCAGTATAATTTTATGTCAACCCTGCTTTGCAGCCTTGAATAATGCAATATGAAGAGAGTTGTGTAATTTCTGGGAAAAAAAAAAAGACTACGAATGAGCTTTCATTTAACTGATGCATAAAACCTAATTTTCTATCCAAACTTCTAGCATGAGATTAGTAGTCTATAAGTCGAAATATAAAGAAACCTTTGCAAAACCGTCCAGATATGAACTTGATCATTATATTTCATTTTAAGATAGTTGTCACTTGTTAACTAGTATTATATTTTCATCTATAGTTCTTAGACCAATCGATTCTCTCGATTCTTAGGTCCTTTCACGCAAATTTGTCTAGGCTGATTGGACTAATAGTAATTGTTTCTGTGTTGTGATGCAGGAGGTGACATAGTGCTTCTGTATGCTTCCAAATATCATGACATTAAAACTGTTGTCAACCTCTCTGGACGTTATGATCTTAAGGCAGGCATCGAAGAACGGCTTGGTAAAGATTATTTGGAAAGAATTACAAATGAGGGTTTTATTGATGTGAAGACGAAGTCAGGTAAATTGTTTACTCAAGCTTATAATATCACAAGCACAAAGTTTGAGCTAGACAAAATCATGATCTTGTTCAATAACTGCAAAATTATTTGAGTTTAGAACTTTAGAAAATTAGAATTCAGATAGATTTTAACGGGCAAGGTTCCCATTGCGGATAATGAAAATTGATAAGTCCTTTGTTTTAATCTATGTAACATATATGAACTGAATTACTATGTTATTTATTAAATGATCATTTGAGAACATCTACTGTTGCAGGAAGTTTGGATTACCGTGTTACTAAGGAAAGTTTAATAGATCGCATGGGTACAAACATGCATGAAGCGTGCCTACAGATTGACAAAGAATGCAGGTTAGGGGAAAAACTGTTTGATCTCTTCTCCTTTTACTTCTGGCTCCATTTCTTCGTTGATAAACTTATCAAGTTACAATGATGCATAAATATGCTAATGCCAAATTACATCATATATGGCAGGGTCCTTACAGTTCACGGTTCTTCTGACAAAATTATCCCCGTTCAAAGTGCGCATGAGTTTGCTAAGGTCATACCAAATCACAAGTTGCATATCATTAAACGAGCTAATCATGCATACAGTAGTCATCAAGACGTGTTATCCTCAGCTGTCATGAGCTTCATCAAGGAAACCATTGACCACAATAAGGGTACTGTTAGCTAG
Protein sequence

>MS.gene026088.t1

MDSTILTAGQPHQRVIIPNKRGEKLVGILVECGATNDIVILCHGFRCTKDTNLMLNLVAALEKAQITSFRFDFSGNGESEGSFQYGNYWGEVEELHAVVQHFRESNRVIRAIVGHSKGGDIVLLYASKYHDIKTVVNLSGRYDLKAGIEERLGKDYLERITNEGFIDVKTKSGSLDYRVTKESLIDRMGTNMHEACLQIDKECRVLTVHGSSDKIIPVQSAHEFAKVIPNHKLHIIKRANHAYSSHQDVLSSAVMSFIKETIDHNKGTVS