AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene026085

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026085.t1 MTR_2g039510 94.505 273 13 2 11 281 1 273 0.0 529
MS.gene026085.t1 MTR_2g039480 82.707 266 44 2 18 281 4 269 6.50e-162 451
MS.gene026085.t1 MTR_2g039570 81.226 261 49 0 21 281 5 265 9.95e-162 450
MS.gene026085.t1 MTR_2g039450 76.030 267 64 0 11 277 1 267 2.18e-149 420
MS.gene026085.t1 MTR_4g126050 72.119 269 72 3 11 279 57 322 2.90e-142 403
MS.gene026085.t1 MTR_4g126120 67.681 263 83 2 11 273 1 261 2.04e-135 383
MS.gene026085.t1 MTR_4g126120 68.800 250 77 1 24 273 22 270 7.99e-132 375
MS.gene026085.t1 MTR_1g016050 62.348 247 92 1 24 270 8 253 2.62e-112 325
MS.gene026085.t1 MTR_4g126050 72.131 183 48 3 11 193 57 236 1.22e-90 269
MS.gene026085.t1 MTR_1g016060 45.109 184 80 2 98 280 466 629 4.51e-38 142
MS.gene026085.t1 MTR_2g039550 44.048 84 22 2 6 88 11 70 2.63e-12 61.6
MS.gene026085.t1 MTR_4g124530 50.943 53 23 1 129 178 14 66 2.13e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026085.t1 AT3G47590 67.984 253 78 2 24 276 59 308 1.24e-126 363
MS.gene026085.t1 AT1G29840 63.971 272 95 2 5 276 43 311 2.63e-124 357
MS.gene026085.t1 AT3G47560 66.802 247 79 2 24 270 10 253 4.03e-121 347
MS.gene026085.t1 AT3G47560 64.368 261 88 3 10 270 34 289 1.06e-120 347
MS.gene026085.t1 AT3G47560 60.886 271 81 2 24 270 10 279 1.77e-117 339
MS.gene026085.t1 AT3G47560 60.219 274 79 3 24 270 10 280 1.41e-114 332
MS.gene026085.t1 AT5G11910 60.784 255 98 2 16 270 33 285 6.80e-114 331
MS.gene026085.t1 AT5G11910 59.328 268 103 3 7 270 2 267 1.01e-113 330
MS.gene026085.t1 AT3G47560 55.369 298 81 3 24 270 10 306 5.50e-111 323
MS.gene026085.t1 AT2G19550 59.055 254 94 6 25 273 5 253 1.60e-102 302
MS.gene026085.t1 AT3G47590 69.872 156 46 1 24 179 59 213 1.89e-76 232
MS.gene026085.t1 AT5G11910 60.811 148 56 2 16 163 33 178 8.67e-61 191
MS.gene026085.t1 AT5G11910 60.811 148 56 2 16 163 15 160 1.16e-60 190

Find 48 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGCCTTGGCAAAGATTATT+TGG 0.161176 2.2:+47936208 MS.gene026085:CDS
ACATACTGTTGCAGGAAATT+TGG 0.190110 2.2:+47936504 MS.gene026085:intron
AAGATTATTTGGAAAGAATT+AGG 0.245805 2.2:+47936219 MS.gene026085:CDS
ATGATATTTAACTTGTGATT+TGG 0.296012 2.2:-47937139 None:intergenic
AACTCATGTGCATCTTGAAC+CGG 0.367451 2.2:-47937103 None:intergenic
GTTGGCATATTGCATGAAAC+TGG 0.379165 2.2:+47934234 MS.gene026085:CDS
AGTACTCTTGTTGTGGTCAA+TGG 0.384576 2.2:-47937236 None:intergenic
TTTGATGTGAAGAGGAGTTC+AGG 0.389844 2.2:+47936254 MS.gene026085:CDS
CTTGTGATTTGGTATGATCT+TGG 0.407081 2.2:-47937128 None:intergenic
CAGAAGAACCATGAATTGTT+AGG 0.417355 2.2:-47937069 None:intergenic
AAAACTGTTGTTAACCTCTC+TGG 0.430009 2.2:+47936155 MS.gene026085:CDS
GACAGGGTCCTAACAATTCA+TGG 0.435771 2.2:+47937061 MS.gene026085:intron
TGTTACCGAGGAAAGTTTGA+TGG 0.439937 2.2:+47936534 MS.gene026085:CDS
ATTGAACCTTGCTGCTGCAT+TGG 0.440960 2.2:+47934419 MS.gene026085:CDS
CGTGTGATCCGTGCAATTGT+TGG 0.442805 2.2:+47935544 MS.gene026085:CDS
CAACAAGAGTACTGCTAGCT+AGG 0.447007 2.2:+47937246 MS.gene026085:CDS
TGCAGATTGACAAAGATTGC+AGG 0.447725 2.2:+47936590 MS.gene026085:CDS
CCTTGCTGCTGCATTGGAAA+AGG 0.467817 2.2:+47934425 MS.gene026085:CDS
CACAAGTTAAATATCATTGA+AGG 0.469307 2.2:+47937145 MS.gene026085:CDS
CGTTTGAGTACGGTAACTAC+TGG 0.470793 2.2:+47935470 MS.gene026085:CDS
TGCAATCTTTGTCAATCTGC+AGG 0.492750 2.2:-47936588 None:intergenic
GACATTGTTATCTTATGTCA+TGG 0.505179 2.2:+47934267 MS.gene026085:CDS
GGATCACACGATTTGATTCA+CGG 0.506479 2.2:-47935531 None:intergenic
TTGGAAAGAATTAGGAAGGA+CGG 0.522675 2.2:+47936227 MS.gene026085:CDS
TTTCCAAATAATCTTTGCCA+AGG 0.524199 2.2:-47936211 None:intergenic
TTATTTGGAAAGAATTAGGA+AGG 0.529949 2.2:+47936223 MS.gene026085:CDS
TTCTTCTGACGAAATTATCC+CGG 0.538226 2.2:+47937084 MS.gene026085:CDS
ACGGTTTCTTTGATGTGAAG+AGG 0.543472 2.2:+47936246 MS.gene026085:CDS
GCAATTGTTGGACATAGTAA+AGG 0.544207 2.2:+47935556 MS.gene026085:CDS
AGTTCTTACGAGCTTCATCA+AGG 0.545473 2.2:+47937210 MS.gene026085:CDS
TACTATGTCCAACAATTGCA+CGG 0.547440 2.2:-47935552 None:intergenic
CTCTGGACGTTATGATCTGA+AGG 0.550517 2.2:+47936172 MS.gene026085:CDS
AGCGAAGGTTCGTTTGAGTA+CGG 0.557534 2.2:+47935460 MS.gene026085:CDS
GGACGTTATGATCTGAAGGC+AGG 0.563099 2.2:+47936176 MS.gene026085:CDS
ACTCATGTGCATCTTGAACC+GGG 0.566619 2.2:-47937102 None:intergenic
GCGATCCATCAAACTTTCCT+CGG 0.573826 2.2:-47936539 None:intergenic
AGCTAGCAGTACTCTTGTTG+TGG 0.580225 2.2:-47937243 None:intergenic
CATTTCCAGAAAAGTCAAAA+CGG 0.584654 2.2:-47934464 None:intergenic
CGGTAACTACTGGAAAGAAG+TGG 0.591735 2.2:+47935480 MS.gene026085:CDS
GCAGGCATTGAAGAACGCCT+TGG 0.597706 2.2:+47936194 MS.gene026085:CDS
GATATTTGGAAGCATACAGA+AGG 0.625385 2.2:-47936124 None:intergenic
TCAAACTTTCCTCGGTAACA+CGG 0.633097 2.2:-47936531 None:intergenic
ATGACATAAGATAACAATGT+CGG 0.639340 2.2:-47934265 None:intergenic
TTTCCTTCAAGGGAAAGCGA+AGG 0.664955 2.2:+47935445 MS.gene026085:intron
ACATAAGATAACAATGTCGG+TGG 0.673820 2.2:-47934262 None:intergenic
TTTGGACTACCGTGTTACCG+AGG 0.680669 2.2:+47936522 MS.gene026085:CDS
GATGAAGCTCGTAAGAACTG+AGG 0.686004 2.2:-47937206 None:intergenic
TCAGATCATAACGTCCAGAG+AGG 0.713623 2.2:-47936169 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAGTTTTTAAAAAAAGTA+TGG - chr2.2:47936797-47936816 None:intergenic 10.0%
!! ATTCATTAAATGATCATTTA+AGG + chr2.2:47936479-47936498 MS.gene026085:intron 15.0%
!! GTAATAATTTGAGAAAAAAA+TGG - chr2.2:47934903-47934922 None:intergenic 15.0%
!!! TTTTTCTCTCTTTATATTAT+AGG + chr2.2:47934383-47934402 MS.gene026085:intron 15.0%
!! AAAAAGAAAAAGAAACAAGA+AGG - chr2.2:47934322-47934341 None:intergenic 20.0%
!! AAAATATAAGTCAATCCAAA+CGG + chr2.2:47934585-47934604 MS.gene026085:intron 20.0%
!! AAGATTATTTGGAAAGAATT+AGG + chr2.2:47936219-47936238 MS.gene026085:CDS 20.0%
!! ACATAAATTTATTGTACATG+AGG - chr2.2:47935348-47935367 None:intergenic 20.0%
!! ATCTCTATAATGATATTTGT+TGG + chr2.2:47935985-47936004 MS.gene026085:intron 20.0%
!! CAATGAATGATAGTATAAAT+TGG - chr2.2:47935666-47935685 None:intergenic 20.0%
!!! ATACCTATTTGTTAAAATGA+AGG - chr2.2:47935958-47935977 None:intergenic 20.0%
!!! ATGATATTTAACTTGTGATT+TGG - chr2.2:47937142-47937161 None:intergenic 20.0%
!!! GTCAATTTTCATTATCATAA+AGG - chr2.2:47936405-47936424 None:intergenic 20.0%
!!! TATCCTTCATTTTAACAAAT+AGG + chr2.2:47935952-47935971 MS.gene026085:intron 20.0%
!!! TTAGAACTTTAGAATTCAAA+TGG + chr2.2:47936375-47936394 MS.gene026085:intron 20.0%
! AAAAATGGTGAAAAACTTGT+TGG + chr2.2:47934216-47934235 MS.gene026085:CDS 25.0%
! AAATATAAGTCAATCCAAAC+GGG + chr2.2:47934586-47934605 MS.gene026085:intron 25.0%
! AACATGAAGATGTTAAGTTA+TGG + chr2.2:47935617-47935636 MS.gene026085:intron 25.0%
! AATACCATGATAAGATGATA+AGG - chr2.2:47935288-47935307 None:intergenic 25.0%
! ATAGTGCTACATATGATATA+TGG + chr2.2:47936940-47936959 MS.gene026085:intron 25.0%
! ATCATAATACCCAACAAAAA+TGG + chr2.2:47934201-47934220 MS.gene026085:CDS 25.0%
! ATGACATAAGATAACAATGT+CGG - chr2.2:47934268-47934287 None:intergenic 25.0%
! ATTTCCTTATCATCTTATCA+TGG + chr2.2:47935281-47935300 MS.gene026085:intron 25.0%
! CACAAGTTAAATATCATTGA+AGG + chr2.2:47937145-47937164 MS.gene026085:CDS 25.0%
! GATAAGATGATAAGGAAATT+GGG - chr2.2:47935280-47935299 None:intergenic 25.0%
! GATTTATACTGCAAAATGAT+AGG + chr2.2:47934710-47934729 MS.gene026085:intron 25.0%
! GGTATACTTCTTATGATTTA+GGG + chr2.2:47934487-47934506 MS.gene026085:intron 25.0%
! TACACAAGAATTTGAGAAAA+TGG - chr2.2:47936028-47936047 None:intergenic 25.0%
! TACAGCAATTAATCATCTTT+CGG - chr2.2:47935009-47935028 None:intergenic 25.0%
! TATATCCAAACTCAAAACAT+AGG - chr2.2:47935045-47935064 None:intergenic 25.0%
! TGATAAGATGATAAGGAAAT+TGG - chr2.2:47935281-47935300 None:intergenic 25.0%
! TTATTTGGAAAGAATTAGGA+AGG + chr2.2:47936223-47936242 MS.gene026085:CDS 25.0%
! TTGAATGTAAGAAACTAACA+TGG - chr2.2:47934098-47934117 None:intergenic 25.0%
!! AAGATGTTAAGTTATGGTTT+TGG + chr2.2:47935623-47935642 MS.gene026085:intron 25.0%
!! ACAATTCCTTTTCCAAAATT+GGG + chr2.2:47935313-47935332 MS.gene026085:intron 25.0%
!! ACATGAGCATTGTATTAATT+TGG + chr2.2:47936455-47936474 MS.gene026085:intron 25.0%
!! TGATTACTTTGAAAACAAAC+AGG - chr2.2:47936863-47936882 None:intergenic 25.0%
!!! AAGTTTTTCACCATTTTTGT+TGG - chr2.2:47934214-47934233 None:intergenic 25.0%
!!! AGTTTTAATGTCGTGATATT+TGG - chr2.2:47936141-47936160 None:intergenic 25.0%
!!! AGTTTTTCACCATTTTTGTT+GGG - chr2.2:47934213-47934232 None:intergenic 25.0%
!!! GGTTTTTAGTTTAGGATTAT+TGG + chr2.2:47935220-47935239 MS.gene026085:intron 25.0%
!!! TATGTTTTGAGTTTGGATAT+AGG + chr2.2:47935044-47935063 MS.gene026085:intron 25.0%
!!! TTGAACTTATGCTTTTTAGT+GGG + chr2.2:47934961-47934980 MS.gene026085:intron 25.0%
!!! TTTGAACTTATGCTTTTTAG+TGG + chr2.2:47934960-47934979 MS.gene026085:intron 25.0%
AAGCTACATCATATATGACA+GGG + chr2.2:47937045-47937064 MS.gene026085:intron 30.0%
AAGTTAAGAGAAAGCAAAGA+AGG - chr2.2:47935413-47935432 None:intergenic 30.0%
CAATCTTAACATGCAAAGTA+TGG - chr2.2:47935751-47935770 None:intergenic 30.0%
CATTTCCAGAAAAGTCAAAA+CGG - chr2.2:47934467-47934486 None:intergenic 30.0%
GACATTGTTATCTTATGTCA+TGG + chr2.2:47934267-47934286 MS.gene026085:CDS 30.0%
GATACTTCTTGTCATAATTG+AGG - chr2.2:47935707-47935726 None:intergenic 30.0%
GATGAATGAACTGAATCATA+TGG + chr2.2:47935079-47935098 MS.gene026085:intron 30.0%
GGGTATACTTCTTATGATTT+AGG + chr2.2:47934486-47934505 MS.gene026085:intron 30.0%
GTCATAATTGAGGTGTATAA+TGG - chr2.2:47935697-47935716 None:intergenic 30.0%
TGTTATTACTCTTACAGTTC+TGG + chr2.2:47935199-47935218 MS.gene026085:intron 30.0%
TTTCCAAATAATCTTTGCCA+AGG - chr2.2:47936214-47936233 None:intergenic 30.0%
! AACATGGATTTTGTGAAGAT+AGG - chr2.2:47934082-47934101 None:intergenic 30.0%
! ACATGGATTTTGTGAAGATA+GGG - chr2.2:47934081-47934100 None:intergenic 30.0%
! AGGAAAATACTACCCAATTT+TGG - chr2.2:47935328-47935347 None:intergenic 30.0%
! GACAATTCCTTTTCCAAAAT+TGG + chr2.2:47935312-47935331 MS.gene026085:intron 30.0%
! TACTTTGAAAACAAACAGGT+AGG - chr2.2:47936859-47936878 None:intergenic 30.0%
! TGGACATAGTAAAGGTATAT+TGG + chr2.2:47935564-47935583 MS.gene026085:intron 30.0%
!! ATACTACCCAATTTTGGAAA+AGG - chr2.2:47935322-47935341 None:intergenic 30.0%
!! GATGAAGTTCAATTTTAGCA+TGG - chr2.2:47935930-47935949 None:intergenic 30.0%
!! TGAACTTATGCTTTTTAGTG+GGG + chr2.2:47934962-47934981 MS.gene026085:intron 30.0%
!! TTCTCTTAACTTTAGCTTGT+GGG + chr2.2:47935421-47935440 MS.gene026085:intron 30.0%
!! TTGGAAGGGTGTATATTTTT+AGG + chr2.2:47934767-47934786 MS.gene026085:intron 30.0%
!! TTTCTCTTAACTTTAGCTTG+TGG + chr2.2:47935420-47935439 MS.gene026085:intron 30.0%
!!! ACAGTTCTGGTTTTTAGTTT+AGG + chr2.2:47935212-47935231 MS.gene026085:intron 30.0%
!!! ATTTGCCTATGTTTTGAGTT+TGG + chr2.2:47935037-47935056 MS.gene026085:intron 30.0%
!!! GTTTTGACTTTTCTGGAAAT+GGG + chr2.2:47934466-47934485 MS.gene026085:CDS 30.0%
AAAACTGTTGTTAACCTCTC+TGG + chr2.2:47936155-47936174 MS.gene026085:CDS 35.0%
AAAAGGAGAAGAGATCAAAC+AGG - chr2.2:47936627-47936646 None:intergenic 35.0%
ACATAAGATAACAATGTCGG+TGG - chr2.2:47934265-47934284 None:intergenic 35.0%
ACATACTGTTGCAGGAAATT+TGG + chr2.2:47936504-47936523 MS.gene026085:intron 35.0%
AGGATTGATGTGATTTCATG+TGG + chr2.2:47934787-47934806 MS.gene026085:intron 35.0%
CAAGCTACATCATATATGAC+AGG + chr2.2:47937044-47937063 MS.gene026085:intron 35.0%
CAGAAGAACCATGAATTGTT+AGG - chr2.2:47937072-47937091 None:intergenic 35.0%
CATGCTTGAACAACAAAGAA+TGG - chr2.2:47936660-47936679 None:intergenic 35.0%
CTACATATGATATATGGCGA+AGG + chr2.2:47936946-47936965 MS.gene026085:intron 35.0%
CTGTCATATATGATGTAGCT+TGG - chr2.2:47937046-47937065 None:intergenic 35.0%
GATAAATGAAAGCTCATTCC+TGG - chr2.2:47935831-47935850 None:intergenic 35.0%
GCAATTGTTGGACATAGTAA+AGG + chr2.2:47935556-47935575 MS.gene026085:CDS 35.0%
GTAGACTATAAAGAACACAC+TGG - chr2.2:47934937-47934956 None:intergenic 35.0%
TACTATGTCCAACAATTGCA+CGG - chr2.2:47935555-47935574 None:intergenic 35.0%
TGACAAAGATTGCAGGTTAA+TGG + chr2.2:47936597-47936616 MS.gene026085:intron 35.0%
TTCAGGTAAATCGTTTACTC+AGG + chr2.2:47936271-47936290 MS.gene026085:intron 35.0%
TTCTTCTGACGAAATTATCC+CGG + chr2.2:47937084-47937103 MS.gene026085:CDS 35.0%
TTGGAAAGAATTAGGAAGGA+CGG + chr2.2:47936227-47936246 MS.gene026085:CDS 35.0%
! GATATTTGGAAGCATACAGA+AGG - chr2.2:47936127-47936146 None:intergenic 35.0%
!! CTTGTGATTTGGTATGATCT+TGG - chr2.2:47937131-47937150 None:intergenic 35.0%
!!! CGTTTTGACTTTTCTGGAAA+TGG + chr2.2:47934465-47934484 MS.gene026085:CDS 35.0%
!!! TCTTTCCGTTTTGACTTTTC+TGG + chr2.2:47934459-47934478 MS.gene026085:CDS 35.0%
AACTCATGTGCATCTTGAAC+CGG - chr2.2:47937106-47937125 None:intergenic 40.0%
ACCAAAGCAAACACATCAGA+CGG - chr2.2:47935136-47935155 None:intergenic 40.0%
ACGCCTTGGCAAAGATTATT+TGG + chr2.2:47936208-47936227 MS.gene026085:CDS 40.0%
ACGGTTTCTTTGATGTGAAG+AGG + chr2.2:47936246-47936265 MS.gene026085:CDS 40.0%
AGAAAGCAAAGAAGGAAGCA+AGG - chr2.2:47935405-47935424 None:intergenic 40.0%
AGAATGGAGCTAGCAGTAAA+AGG - chr2.2:47936644-47936663 None:intergenic 40.0%
AGTTCTTACGAGCTTCATCA+AGG + chr2.2:47937210-47937229 MS.gene026085:CDS 40.0%
ATAAGGAAATTGGGTCACTG+AGG - chr2.2:47935271-47935290 None:intergenic 40.0%
CCATCATCCTAGCAAACTTT+GGG - chr2.2:47936057-47936076 None:intergenic 40.0%
GAAGAGATTTGCGTAACTTC+TGG + chr2.2:47935792-47935811 MS.gene026085:intron 40.0%
GGATCACACGATTTGATTCA+CGG - chr2.2:47935534-47935553 None:intergenic 40.0%
GTTGGCATATTGCATGAAAC+TGG + chr2.2:47934234-47934253 MS.gene026085:CDS 40.0%
TCAAACTTTCCTCGGTAACA+CGG - chr2.2:47936534-47936553 None:intergenic 40.0%
TCCATCATCCTAGCAAACTT+TGG - chr2.2:47936058-47936077 None:intergenic 40.0%
TCTGGCAAAAAACATACACC+AGG + chr2.2:47935810-47935829 MS.gene026085:intron 40.0%
TGCAATCTTTGTCAATCTGC+AGG - chr2.2:47936591-47936610 None:intergenic 40.0%
TGCAGATTGACAAAGATTGC+AGG + chr2.2:47936590-47936609 MS.gene026085:CDS 40.0%
TGTTACCGAGGAAAGTTTGA+TGG + chr2.2:47936534-47936553 MS.gene026085:CDS 40.0%
TTAAGGACACATACTGTTGC+AGG + chr2.2:47936496-47936515 MS.gene026085:intron 40.0%
TTTGATGTGAAGAGGAGTTC+AGG + chr2.2:47936254-47936273 MS.gene026085:CDS 40.0%
! ACTTTCACCCAAAGTTTGCT+AGG + chr2.2:47936047-47936066 MS.gene026085:intron 40.0%
! AGTACTCTTGTTGTGGTCAA+TGG - chr2.2:47937239-47937258 None:intergenic 40.0%
! TTTGAGTTTGGATATAGGCG+TGG + chr2.2:47935049-47935068 MS.gene026085:intron 40.0%
!! TCCTGGTTGTTCTTTTGGAA+GGG + chr2.2:47934753-47934772 MS.gene026085:intron 40.0%
!! TTGTTTCTGTGTCATGATGC+AGG + chr2.2:47936089-47936108 MS.gene026085:intron 40.0%
!!! GCTTTTTAGTGGGGTATTGA+GGG + chr2.2:47934971-47934990 MS.gene026085:intron 40.0%
!!! TGCTTTTTAGTGGGGTATTG+AGG + chr2.2:47934970-47934989 MS.gene026085:intron 40.0%
AAGAACAACCAGGACAGAGA+TGG - chr2.2:47934747-47934766 None:intergenic 45.0%
ACCCTTCCAAAAGAACAACC+AGG - chr2.2:47934757-47934776 None:intergenic 45.0%
ACTCATGTGCATCTTGAACC+GGG - chr2.2:47937105-47937124 None:intergenic 45.0%
AGCGAAGGTTCGTTTGAGTA+CGG + chr2.2:47935460-47935479 MS.gene026085:CDS 45.0%
AGCTAGCAGTACTCTTGTTG+TGG - chr2.2:47937246-47937265 None:intergenic 45.0%
ATTGAACCTTGCTGCTGCAT+TGG + chr2.2:47934419-47934438 MS.gene026085:CDS 45.0%
CACACTGACATGCCTTCAAT+TGG - chr2.2:47934845-47934864 None:intergenic 45.0%
CATGCCTTCAATTGGAATGC+AGG - chr2.2:47934837-47934856 None:intergenic 45.0%
CCAAAGCAAACACATCAGAC+GGG - chr2.2:47935135-47935154 None:intergenic 45.0%
CGGTAACTACTGGAAAGAAG+TGG + chr2.2:47935480-47935499 MS.gene026085:CDS 45.0%
CGTTTGAGTACGGTAACTAC+TGG + chr2.2:47935470-47935489 MS.gene026085:CDS 45.0%
CTCTGGACGTTATGATCTGA+AGG + chr2.2:47936172-47936191 MS.gene026085:CDS 45.0%
GACACCTGCATTCCAATTGA+AGG + chr2.2:47934830-47934849 MS.gene026085:intron 45.0%
GACAGGGTCCTAACAATTCA+TGG + chr2.2:47937061-47937080 MS.gene026085:intron 45.0%
GATGAAGCTCGTAAGAACTG+AGG - chr2.2:47937209-47937228 None:intergenic 45.0%
GCGATCCATCAAACTTTCCT+CGG - chr2.2:47936542-47936561 None:intergenic 45.0%
TCAGATCATAACGTCCAGAG+AGG - chr2.2:47936172-47936191 None:intergenic 45.0%
TTTCCTTCAAGGGAAAGCGA+AGG + chr2.2:47935445-47935464 MS.gene026085:intron 45.0%
TTTCTGTGTCATGATGCAGG+AGG + chr2.2:47936092-47936111 MS.gene026085:intron 45.0%
! AGCTTGTGGGTTTTCCTTCA+AGG + chr2.2:47935434-47935453 MS.gene026085:intron 45.0%
! CTCTGTCCTGGTTGTTCTTT+TGG + chr2.2:47934748-47934767 MS.gene026085:intron 45.0%
! GCTTGTGGGTTTTCCTTCAA+GGG + chr2.2:47935435-47935454 MS.gene026085:intron 45.0%
! GTCCTGGTTGTTCTTTTGGA+AGG + chr2.2:47934752-47934771 MS.gene026085:intron 45.0%
!! CCCAAAGTTTGCTAGGATGA+TGG + chr2.2:47936054-47936073 MS.gene026085:intron 45.0%
!!! TCAATTTTTTTAAAATTTTT+TGG - chr2.2:47934127-47934146 None:intergenic 5.0%
AAGCAAACACATCAGACGGG+CGG - chr2.2:47935132-47935151 None:intergenic 50.0%
CCCGTCTGATGTGTTTGCTT+TGG + chr2.2:47935132-47935151 MS.gene026085:intron 50.0%
CCTTGCTGCTGCATTGGAAA+AGG + chr2.2:47934425-47934444 MS.gene026085:CDS 50.0%
CGTGTGATCCGTGCAATTGT+TGG + chr2.2:47935544-47935563 MS.gene026085:CDS 50.0%
GAACACACTGGATACGACAC+TGG - chr2.2:47934925-47934944 None:intergenic 50.0%
GAACCTTCGCTTTCCCTTGA+AGG - chr2.2:47935451-47935470 None:intergenic 50.0%
GCGTTCACTAAAAGCCCGTT+TGG - chr2.2:47934603-47934622 None:intergenic 50.0%
GGACGTTATGATCTGAAGGC+AGG + chr2.2:47936176-47936195 MS.gene026085:CDS 50.0%
GTGACATCGACACACACATC+TGG + chr2.2:47934862-47934881 MS.gene026085:intron 50.0%
TGGATATAGGCGTGGATCAC+TGG + chr2.2:47935057-47935076 MS.gene026085:intron 50.0%
TTTGGACTACCGTGTTACCG+AGG + chr2.2:47936522-47936541 MS.gene026085:CDS 50.0%
! CCTTTTCCAATGCAGCAGCA+AGG - chr2.2:47934428-47934447 None:intergenic 50.0%
AGACCAAGCCATCTCTGTCC+TGG + chr2.2:47934736-47934755 MS.gene026085:intron 55.0%
CAACCAGGACAGAGATGGCT+TGG - chr2.2:47934742-47934761 None:intergenic 55.0%
!! GCAGGCATTGAAGAACGCCT+TGG + chr2.2:47936194-47936213 MS.gene026085:CDS 55.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 47934044 47937267 47934044 ID=MS.gene026085
chr2.2 mRNA 47934044 47937267 47934044 ID=MS.gene026085.t1;Parent=MS.gene026085
chr2.2 exon 47934044 47934098 47934044 ID=MS.gene026085.t1.exon1;Parent=MS.gene026085.t1
chr2.2 CDS 47934044 47934098 47934044 ID=cds.MS.gene026085.t1;Parent=MS.gene026085.t1
chr2.2 exon 47934181 47934305 47934181 ID=MS.gene026085.t1.exon2;Parent=MS.gene026085.t1
chr2.2 CDS 47934181 47934305 47934181 ID=cds.MS.gene026085.t1;Parent=MS.gene026085.t1
chr2.2 exon 47934405 47934487 47934405 ID=MS.gene026085.t1.exon3;Parent=MS.gene026085.t1
chr2.2 CDS 47934405 47934487 47934405 ID=cds.MS.gene026085.t1;Parent=MS.gene026085.t1
chr2.2 exon 47935456 47935577 47935456 ID=MS.gene026085.t1.exon4;Parent=MS.gene026085.t1
chr2.2 CDS 47935456 47935577 47935456 ID=cds.MS.gene026085.t1;Parent=MS.gene026085.t1
chr2.2 exon 47936111 47936275 47936111 ID=MS.gene026085.t1.exon5;Parent=MS.gene026085.t1
chr2.2 CDS 47936111 47936275 47936111 ID=cds.MS.gene026085.t1;Parent=MS.gene026085.t1
chr2.2 exon 47936518 47936611 47936518 ID=MS.gene026085.t1.exon6;Parent=MS.gene026085.t1
chr2.2 CDS 47936518 47936611 47936518 ID=cds.MS.gene026085.t1;Parent=MS.gene026085.t1
chr2.2 exon 47937066 47937267 47937066 ID=MS.gene026085.t1.exon7;Parent=MS.gene026085.t1
chr2.2 CDS 47937066 47937267 47937066 ID=cds.MS.gene026085.t1;Parent=MS.gene026085.t1
Gene Sequence

>MS.gene026085

ATGCAACTTGAAAACAAGAGTGAAGTGAAGATGTCCCTATCTTCACAAAATCCATGTTAGTTTCTTACATTCAATATAAACCAAAAAATTTTAAAAAAATTGATGAATGATTTATTATTTTTTATTTGTTTTTGTAGCTATTGAGCATTATCAAAGAATCATAATACCCAACAAAAATGGTGAAAAACTTGTTGGCATATTGCATGAAACTGGAACAACCACCGACATTGTTATCTTATGTCATGGTTTTCGTTGCTCTAAAGTTAGTACTTGTTCCTTCTTGTTTCTTTTTCTTTTTTACTTAAATTTATGAATAATTTTTTTTATTAATTTGTGTTTTTTTTCTCTCTTTATATTATAGGATATCAATCTCATATTGAACCTTGCTGCTGCATTGGAAAAGGAACAGATTAGTTCTTTCCGTTTTGACTTTTCTGGAAATGGGTATACTTCTTATGATTTAGGGATTGACTTATTTTTGAACTTATGCAAAACAGCTTATGAAGATACAATTTTCGTTAGATATTTATTTACATAAGCTAAAATATAAGTCAATCCAAACGGGCTTTTAGTGAACGCAATCATATTAACTGAATAATCATTTTGACTACATTTTGATATATAGTCAATCGCATTCTAAATGTTTGTGAAATTGTCTCTAAAATTGATTTATACTGCAAAATGATAGGCTAAGACCAAGCCATCTCTGTCCTGGTTGTTCTTTTGGAAGGGTGTATATTTTTAGGATTGATGTGATTTCATGTGGTTTATGATCTACATAGCACTGACACCTGCATTCCAATTGAAGGCATGTCAGTGTGACATCGACACACACATCTGGTTACATTCAATTATTCCATTTTTTTCTCAAATTATTACCAGTGTCGTATCCAGTGTGTTCTTTATAGTCTACAATTTTGAACTTATGCTTTTTAGTGGGGTATTGAGGGAGTTGATAATAGCCGAAAGATGATTAATTGCTGTACTTAAAGCATTTGCCTATGTTTTGAGTTTGGATATAGGCGTGGATCACTGGATGAATGAACTGAATCATATGGTAGTATGATCACTAAAATAGTGTGTTTCCGCCCGTCTGATGTGTTTGCTTTGGTTTGCTGATGTTATTTATACTTATTTATCATAATTATCTAATGTTGTTATTACTCTTACAGTTCTGGTTTTTAGTTTAGGATTATTGGTTTAGTTGTAGTACTATTGTACTATCCTCAGTGACCCAATTTCCTTATCATCTTATCATGGTATTAGATGACAATTCCTTTTCCAAAATTGGGTAGTATTTTCCTCATGTACAATAAATTTATGTACTAAAGTCTATGCTATCTTGTTTTCATCATTTGCCTTGCTTCCTTCTTTGCTTTCTCTTAACTTTAGCTTGTGGGTTTTCCTTCAAGGGAAAGCGAAGGTTCGTTTGAGTACGGTAACTACTGGAAAGAAGTGGATGATTTACATGCTGTTGCTCAACATTTCCGTGAATCAAATCGTGTGATCCGTGCAATTGTTGGACATAGTAAAGGTATATTGGTTTGTTTGCTTATATTGAAGTATTTTAAGCAACATGAAGATGTTAAGTTATGGTTTTGGATATATGATTATGTGCTCCAATTTATACTATCATTCATTGCTAATTTTCCATTATACACCTCAATTATGACAAGAAGTATCGTTATAAAAATATTTTGTCAACCATACTTTGCATGTTAAGATTGCAATGTTGAATGATGCTTTATGAAGAGATTTGCGTAACTTCTGGCAAAAAACATACACCAGGAATGAGCTTTCATTTATCTGATATATAGCTTCTAGCATGAGATTTGTCAATAAGTCGAAAGTTACTATTCTACAAATGAACTTCATTTGCAAAACCATGCTAAAATTGAACTTCATCATTATCCTTCATTTTAACAAATAGGTATTCTATAGATCTCTATAATGATATTTGTTGGTGTAGCTTCTGATCAATCCATTTTCTCAAATTCTTGTGTACTTTCACCCAAAGTTTGCTAGGATGATGGAACTGTTAACAGTTGTTTCTGTGTCATGATGCAGGAGGTGATGTAGTCCTTCTGTATGCTTCCAAATATCACGACATTAAAACTGTTGTTAACCTCTCTGGACGTTATGATCTGAAGGCAGGCATTGAAGAACGCCTTGGCAAAGATTATTTGGAAAGAATTAGGAAGGACGGTTTCTTTGATGTGAAGAGGAGTTCAGGTAAATCGTTTACTCAGGCTAAAAATATCACAAGTACAAAGTTCGAGTTAGACATTGATCGTGAACTGTCTTGTTCAATAACTGTAAAATGACTTGAGTTTAGAACTTTAGAATTCAAATGGATTTCCTTTATGATAATGAAAATTGACAAGTTCTTTGTTTCAGTCTTTATCACTTACACATGAGCATTGTATTAATTTGGTATTCATTAAATGATCATTTAAGGACACATACTGTTGCAGGAAATTTGGACTACCGTGTTACCGAGGAAAGTTTGATGGATCGCTTGAGTACAAATATGCATGAAGCGTGCCTGCAGATTGACAAAGATTGCAGGTTAATGGAAAACCTGTTTGATCTCTTCTCCTTTTACTGCTAGCTCCATTCTTTGTTGTTCAAGCATGCGTCGACGTTGAAATATCACAATAATATTTCTACAATAGAAGCAATAAAAAACATGATATCTCTCAATTGATTATTCTTTCATTACAATTACGTGCAATTTAACTACAACATTTCCATACTTTTTTTAAAAACTTATACTTATCACGTAATCTTGTAACTAAGTTTGATTTTAATACCTACCTGTTTGTTTTCAAAGTAATCATTGTAAATAATACAAAATAATGCTTTTAAGATATTCAAGTTTCTTTAAATAATTGAAATAGTGCTACATATGATATATGGCGAAGGAGCAGAGAAGACTGCAAGCAACAATTCTTGAACTTATCAAGTTACATTGATGCATATGATATATACTGTTAATGCCAAGCTACATCATATATGACAGGGTCCTAACAATTCATGGTTCTTCTGACGAAATTATCCCGGTTCAAGATGCACATGAGTTTGCCAAGATCATACCAAATCACAAGTTAAATATCATTGAAGGAGCTGATCATGCATACAATAATCATCAAGATGAGTTATCCTCAGTTCTTACGAGCTTCATCAAGGAAACCATTGACCACAACAAGAGTACTGCTAGCTAG
Protein sequence

>MS.gene026085.t1

MQLENKSEVKMSLSSQNPSIEHYQRIIIPNKNGEKLVGILHETGTTTDIVILCHGFRCSKDINLILNLAAALEKEQISSFRFDFSGNGESEGSFEYGNYWKEVDDLHAVAQHFRESNRVIRAIVGHSKGGDVVLLYASKYHDIKTVVNLSGRYDLKAGIEERLGKDYLERIRKDGFFDVKRSSGNLDYRVTEESLMDRLSTNMHEACLQIDKDCRVLTIHGSSDEIIPVQDAHEFAKIIPNHKLNIIEGADHAYNNHQDELSSVLTSFIKETIDHNKSTAS