Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57567.t1 | XP_013458478.1 | 79.7 | 266 | 54 | 0 | 1 | 266 | 1 | 266 | 1.10E-111 | 412.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57567.t1 | A0A072URS5 | 79.7 | 266 | 54 | 0 | 1 | 266 | 1 | 266 | 8.0e-112 | 412.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051859 | MS.gene57567 | 0.937093 | 6.06E-98 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene57567 | MS.gene83168 | PPI |
| MS.gene57567 | MS.gene026088 | PPI |
| MS.gene57567 | MS.gene025115 | PPI |
| MS.gene57567 | MS.gene026083 | PPI |
| MS.gene57567 | MS.gene025118 | PPI |
| MS.gene84671 | MS.gene57567 | PPI |
| MS.gene57567 | MS.gene026084 | PPI |
| MS.gene57567 | MS.gene026086 | PPI |
| MS.gene57567 | MS.gene85625 | PPI |
| MS.gene57567 | MS.gene026085 | PPI |
| MS.gene57567 | MS.gene85627 | PPI |
| MS.gene051858 | MS.gene57567 | PPI |
| MS.gene57567 | MS.gene025116 | PPI |
| MS.gene57567 | MS.gene025114 | PPI |
| MS.gene85626 | MS.gene57567 | PPI |
| MS.gene57567 | MS.gene059902 | PPI |
| MS.gene57567 | MS.gene84672 | PPI |
| MS.gene57567 | MS.gene012270 | PPI |
| MS.gene026086 | MS.gene57567 | PPI |
| MS.gene57569 | MS.gene57567 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57567.t1 | MTR_4g126120 | 94.737 | 266 | 14 | 0 | 1 | 266 | 1 | 266 | 0.0 | 523 |
| MS.gene57567.t1 | MTR_4g126120 | 94.574 | 258 | 14 | 0 | 9 | 266 | 18 | 275 | 0.0 | 506 |
| MS.gene57567.t1 | MTR_2g039510 | 66.288 | 264 | 85 | 2 | 1 | 260 | 1 | 264 | 5.05e-131 | 372 |
| MS.gene57567.t1 | MTR_4g126050 | 65.385 | 260 | 89 | 1 | 1 | 260 | 57 | 315 | 2.42e-129 | 369 |
| MS.gene57567.t1 | MTR_2g039570 | 66.135 | 251 | 84 | 1 | 12 | 261 | 7 | 257 | 1.96e-126 | 360 |
| MS.gene57567.t1 | MTR_2g039480 | 63.566 | 258 | 90 | 2 | 8 | 261 | 4 | 261 | 1.70e-119 | 342 |
| MS.gene57567.t1 | MTR_2g039450 | 57.034 | 263 | 111 | 2 | 1 | 261 | 1 | 263 | 5.00e-106 | 309 |
| MS.gene57567.t1 | MTR_1g016050 | 56.225 | 249 | 109 | 0 | 10 | 258 | 5 | 253 | 4.70e-102 | 298 |
| MS.gene57567.t1 | MTR_4g126050 | 62.431 | 181 | 67 | 1 | 1 | 181 | 57 | 236 | 2.57e-83 | 249 |
| MS.gene57567.t1 | MTR_1g016060 | 40.462 | 173 | 82 | 2 | 87 | 258 | 467 | 619 | 1.25e-30 | 120 |
| MS.gene57567.t1 | MTR_4g124530 | 81.579 | 38 | 7 | 0 | 129 | 166 | 29 | 66 | 4.04e-16 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57567.t1 | AT3G47590 | 60.618 | 259 | 98 | 2 | 7 | 263 | 51 | 307 | 2.98e-114 | 331 |
| MS.gene57567.t1 | AT1G29840 | 60.317 | 252 | 98 | 1 | 12 | 263 | 61 | 310 | 2.58e-110 | 321 |
| MS.gene57567.t1 | AT3G47560 | 60.729 | 247 | 95 | 1 | 12 | 258 | 9 | 253 | 4.24e-108 | 313 |
| MS.gene57567.t1 | AT3G47560 | 60.729 | 247 | 95 | 1 | 12 | 258 | 45 | 289 | 1.24e-107 | 313 |
| MS.gene57567.t1 | AT3G47560 | 55.351 | 271 | 97 | 1 | 12 | 258 | 9 | 279 | 2.66e-104 | 305 |
| MS.gene57567.t1 | AT3G47560 | 54.745 | 274 | 95 | 2 | 12 | 258 | 9 | 280 | 1.10e-101 | 298 |
| MS.gene57567.t1 | AT5G11910 | 53.125 | 256 | 120 | 0 | 3 | 258 | 12 | 267 | 9.47e-100 | 293 |
| MS.gene57567.t1 | AT5G11910 | 53.125 | 256 | 120 | 0 | 3 | 258 | 30 | 285 | 1.08e-99 | 294 |
| MS.gene57567.t1 | AT3G47560 | 50.336 | 298 | 97 | 2 | 12 | 258 | 9 | 306 | 7.04e-98 | 290 |
| MS.gene57567.t1 | AT2G19550 | 53.543 | 254 | 109 | 5 | 10 | 258 | 1 | 250 | 2.93e-91 | 273 |
| MS.gene57567.t1 | AT3G47590 | 61.350 | 163 | 61 | 1 | 7 | 167 | 51 | 213 | 6.08e-71 | 218 |
| MS.gene57567.t1 | AT5G11910 | 55.705 | 149 | 66 | 0 | 3 | 151 | 30 | 178 | 1.74e-57 | 182 |
| MS.gene57567.t1 | AT5G11910 | 55.705 | 149 | 66 | 0 | 3 | 151 | 12 | 160 | 2.01e-57 | 181 |
Find 55 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGCAAAGGGACAAGTTTA+AGG | 0.179174 | 8.4:-8888538 | None:intergenic |
| AGTGAAGGTTCATTTGAATT+TGG | 0.199714 | 8.4:-8890845 | MS.gene57567:CDS |
| CGCTTTGACTTCACTGGAAA+TGG | 0.200683 | 8.4:-8891166 | MS.gene57567:CDS |
| CGTAGAGTTATGGCAATTAT+TGG | 0.216683 | 8.4:-8890761 | MS.gene57567:CDS |
| CATTTGAATTTGGCAACTAT+TGG | 0.312331 | 8.4:-8890835 | MS.gene57567:CDS |
| ATCATAATACCCAACAAGTA+TGG | 0.316741 | 8.4:-8891470 | MS.gene57567:CDS |
| GCATAGGATAACAATCTCTT+TGG | 0.339030 | 8.4:+8891412 | None:intergenic |
| GACAGGTTCCTTACTGTTCA+TGG | 0.397774 | 8.4:-8888715 | MS.gene57567:intron |
| GTAGAGTTATGGCAATTATT+GGG | 0.428640 | 8.4:-8890760 | MS.gene57567:CDS |
| AGTTTATTTCCATACTTGTT+GGG | 0.428920 | 8.4:+8891461 | None:intergenic |
| TCTTTCCGCTTTGACTTCAC+TGG | 0.437314 | 8.4:-8891172 | MS.gene57567:CDS |
| TAGTTTATTTCCATACTTGT+TGG | 0.440588 | 8.4:+8891460 | None:intergenic |
| AACTCAAGTGCGTCTCCAAC+GGG | 0.443167 | 8.4:+8888673 | None:intergenic |
| TGTTTCCAAGACGATCTTCA+AGG | 0.446327 | 8.4:+8889912 | None:intergenic |
| AAAACAGTTGCCAACCTCTC+TGG | 0.452508 | 8.4:-8889956 | MS.gene57567:CDS |
| TGCATTCTTTGTCAATCTGC+AGG | 0.457468 | 8.4:+8889333 | None:intergenic |
| ACGATATGTAACTTGTGATT+CGG | 0.464998 | 8.4:+8888637 | None:intergenic |
| TGAAGCAAACCGTAGAGTTA+TGG | 0.474267 | 8.4:-8890771 | MS.gene57567:CDS |
| GCTTTGACTTCACTGGAAAT+GGG | 0.474450 | 8.4:-8891165 | MS.gene57567:intron |
| CTCTGGTCGCTATGATCTAA+AGG | 0.480670 | 8.4:-8889939 | MS.gene57567:CDS |
| TTGAATTTGGCAACTATTGG+AGG | 0.482147 | 8.4:-8890832 | MS.gene57567:CDS |
| ATTGAGTTGAAGACTAAGTC+AGG | 0.483398 | 8.4:-8889857 | MS.gene57567:intron |
| AAGTATGGAAATAAACTAGT+AGG | 0.483546 | 8.4:-8891455 | MS.gene57567:CDS |
| GCAATTATTGGGCACAGTAA+AGG | 0.484866 | 8.4:-8890749 | MS.gene57567:intron |
| TTGGAGAGAATCAGAAAGGA+AGG | 0.500613 | 8.4:-8889884 | MS.gene57567:CDS |
| CATAACCGAGGAAAGCTTGA+AGG | 0.507061 | 8.4:-8889387 | MS.gene57567:CDS |
| CAATAATTGCCATAACTCTA+CGG | 0.510312 | 8.4:+8890762 | None:intergenic |
| ATCATAGCGACCAGAGAGGT+TGG | 0.518319 | 8.4:+8889946 | None:intergenic |
| GTAGGCAAATTACATGAAGC+TGG | 0.523470 | 8.4:-8891437 | MS.gene57567:CDS |
| TCGATCCTTCAAGCTTTCCT+CGG | 0.523491 | 8.4:+8889382 | None:intergenic |
| ATCAGAGAAACTAACCTTGG+AGG | 0.532587 | 8.4:+8891376 | None:intergenic |
| CCACGGTCTTCGAGCCTCCA+AGG | 0.543850 | 8.4:-8891390 | MS.gene57567:intron |
| CTAAATGCTCAGTATATACA+TGG | 0.545107 | 8.4:+8888602 | None:intergenic |
| GCAGGCCTTGAAGATCGTCT+TGG | 0.551855 | 8.4:-8889917 | MS.gene57567:CDS |
| AGCTGAGTTAGCTTCAATTG+TGG | 0.563562 | 8.4:-8888581 | MS.gene57567:CDS |
| GAACTCAAGTGCGTCTCCAA+CGG | 0.564779 | 8.4:+8888672 | None:intergenic |
| TGAATTTGGCAACTATTGGA+GGG | 0.566972 | 8.4:-8890831 | MS.gene57567:CDS |
| AGGCTCGAAGACCGTGGCAT+AGG | 0.574101 | 8.4:+8891396 | None:intergenic |
| CACAAGTTACATATCGTCAA+AGG | 0.581698 | 8.4:-8888631 | MS.gene57567:CDS |
| CCGCGTCACCATGAACAGTA+AGG | 0.586789 | 8.4:+8888707 | None:intergenic |
| GGTCGCTATGATCTAAAGGC+AGG | 0.588996 | 8.4:-8889935 | MS.gene57567:CDS |
| GCTGCTGCTCTAGATAATGC+AGG | 0.589211 | 8.4:-8891202 | MS.gene57567:CDS |
| TTCTCTTCCAGGGAAAGTGA+AGG | 0.589843 | 8.4:-8890860 | MS.gene57567:intron |
| TGGAGAGAATCAGAAAGGAA+GGG | 0.590267 | 8.4:-8889883 | MS.gene57567:CDS |
| TGCAGATTGACAAAGAATGC+AGG | 0.592169 | 8.4:-8889331 | MS.gene57567:intron |
| TATGTAACTTGTGATTCGGT+AGG | 0.596450 | 8.4:+8888641 | None:intergenic |
| CCTTACTGTTCATGGTGACG+CGG | 0.622022 | 8.4:-8888707 | MS.gene57567:CDS |
| TCTTGAGGCAGGAGCTAATG+TGG | 0.631493 | 8.4:-8890011 | MS.gene57567:intron |
| GAGATTGTTATCCTATGCCA+CGG | 0.643213 | 8.4:-8891407 | MS.gene57567:CDS |
| GCGGACACAATAATTCCCGT+TGG | 0.651618 | 8.4:-8888688 | MS.gene57567:CDS |
| ATTTGGCAACTATTGGAGGG+AGG | 0.660334 | 8.4:-8890828 | MS.gene57567:CDS |
| CCTTGGAGGCTCGAAGACCG+TGG | 0.673058 | 8.4:+8891390 | None:intergenic |
| CATTTCCAGTGAAGTCAAAG+CGG | 0.692758 | 8.4:+8891167 | None:intergenic |
| TGTTGATTATCGCATAACCG+AGG | 0.726198 | 8.4:-8889399 | MS.gene57567:CDS |
| TTAGATCATAGCGACCAGAG+AGG | 0.760661 | 8.4:+8889942 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAAGTTATAACTTATA+TGG | + | chr8.4:8891504-8891523 | None:intergenic | 10.0% |
| !!! | AACTATTTTCTTAAAAAATT+TGG | - | chr8.4:8891630-8891649 | MS.gene57567:intron | 10.0% |
| !!! | AGTTATGATAATTTTTTTAA+TGG | - | chr8.4:8892453-8892472 | MS.gene57567:intron | 10.0% |
| !! | AATAGAAAATTTACAACAAA+TGG | - | chr8.4:8890247-8890266 | MS.gene57567:intron | 15.0% |
| !! | ATAGAAAATTTACAACAAAT+GGG | - | chr8.4:8890248-8890267 | MS.gene57567:intron | 15.0% |
| !! | GATATTATTTAATGAAGTTA+TGG | - | chr8.4:8892481-8892500 | MS.gene57567:intron | 15.0% |
| !! | TTGTAATTATCTAATACATA+CGG | + | chr8.4:8889413-8889432 | None:intergenic | 15.0% |
| !!! | AAAGATGTTTTTGAAAAATA+TGG | - | chr8.4:8889594-8889613 | MS.gene57567:intron | 15.0% |
| !!! | GTTTTTAATATTCATAAGTA+TGG | + | chr8.4:8890590-8890609 | None:intergenic | 15.0% |
| !!! | TATATATTTTATGCAAAACT+CGG | - | chr8.4:8890151-8890170 | MS.gene57567:intron | 15.0% |
| !! | AGAAGAAAATAGATTTATAG+AGG | + | chr8.4:8892088-8892107 | None:intergenic | 20.0% |
| !! | ATAGTGAAATATAATGAACT+TGG | + | chr8.4:8890941-8890960 | None:intergenic | 20.0% |
| !! | ATATAGAGTAAAACAAATCA+AGG | + | chr8.4:8891591-8891610 | None:intergenic | 20.0% |
| !! | ATTGCAAAAATTTATACAGT+GGG | - | chr8.4:8892011-8892030 | MS.gene57567:intron | 20.0% |
| !! | CAAGAAAAAAAGTCAAAAAA+TGG | - | chr8.4:8889080-8889099 | MS.gene57567:intron | 20.0% |
| !! | CAATGTATTTATCTATGAAT+GGG | + | chr8.4:8889936-8889955 | None:intergenic | 20.0% |
| !! | TAAACTATTTCAGCTTATTT+CGG | - | chr8.4:8888868-8888887 | MS.gene57567:intron | 20.0% |
| !! | TAAGTACTTAAAATCCTATA+AGG | + | chr8.4:8889190-8889209 | None:intergenic | 20.0% |
| !! | TAGAAAATTTACAACAAATG+GGG | - | chr8.4:8890249-8890268 | MS.gene57567:intron | 20.0% |
| !! | TATGTAATATGAACTTTGAA+AGG | - | chr8.4:8892219-8892238 | MS.gene57567:intron | 20.0% |
| !! | TATTTACATAGAAAATACAC+TGG | + | chr8.4:8889550-8889569 | None:intergenic | 20.0% |
| !! | TCAATGTATTTATCTATGAA+TGG | + | chr8.4:8889937-8889956 | None:intergenic | 20.0% |
| !! | TGCATAAACAACTTAATTAA+AGG | + | chr8.4:8888990-8889009 | None:intergenic | 20.0% |
| !! | TTTCTCTTATTATTTAGTGA+AGG | - | chr8.4:8892341-8892360 | MS.gene57567:intron | 20.0% |
| !!! | ATGTAATATGAACTTTGAAA+GGG | - | chr8.4:8892220-8892239 | MS.gene57567:intron | 20.0% |
| !!! | ATGTGTATATTGTTTTTTTG+GGG | + | chr8.4:8890914-8890933 | None:intergenic | 20.0% |
| !!! | CTTTTATGTTCAAAGATTTT+GGG | - | chr8.4:8889017-8889036 | MS.gene57567:intron | 20.0% |
| !!! | GATGTGTATATTGTTTTTTT+GGG | + | chr8.4:8890915-8890934 | None:intergenic | 20.0% |
| !!! | TCTATTGATTTATGCTTTTT+GGG | - | chr8.4:8891089-8891108 | MS.gene57567:intron | 20.0% |
| !!! | TGATGTGTATATTGTTTTTT+TGG | + | chr8.4:8890916-8890935 | None:intergenic | 20.0% |
| !!! | TGTAAATTTTCTATTGTGAA+AGG | + | chr8.4:8890242-8890261 | None:intergenic | 20.0% |
| !!! | TTATGTTATTTGAGTATGTT+TGG | - | chr8.4:8888757-8888776 | MS.gene57567:intron | 20.0% |
| !!! | TTCTATTGATTTATGCTTTT+TGG | - | chr8.4:8891088-8891107 | MS.gene57567:intron | 20.0% |
| !!! | TTTTGTTTTGTTTCAAAACT+TGG | + | chr8.4:8892166-8892185 | None:intergenic | 20.0% |
| ! | AACATCCAACAGTTAATAAT+GGG | - | chr8.4:8890979-8890998 | MS.gene57567:intron | 25.0% |
| ! | AAGCAATTAAACAATACTAG+TGG | + | chr8.4:8890345-8890364 | None:intergenic | 25.0% |
| ! | AAGTATGGAAATAAACTAGT+AGG | - | chr8.4:8889792-8889811 | MS.gene57567:intron | 25.0% |
| ! | AATTTAGGTATTTGAATGCA+TGG | + | chr8.4:8891435-8891454 | None:intergenic | 25.0% |
| ! | ACTTATTTGAGCTTATATAC+CGG | - | chr8.4:8888784-8888803 | MS.gene57567:intron | 25.0% |
| ! | AGGAATATATCAATCAAATG+AGG | + | chr8.4:8889380-8889399 | None:intergenic | 25.0% |
| ! | AGTTTATTTCCATACTTGTT+GGG | + | chr8.4:8889789-8889808 | None:intergenic | 25.0% |
| ! | ATATTCGTAATTTAGCTGAT+CGG | + | chr8.4:8890631-8890650 | None:intergenic | 25.0% |
| ! | ATCAATTTGTGTATGTAAGA+TGG | + | chr8.4:8889346-8889365 | None:intergenic | 25.0% |
| ! | ATGCATTCAAATACCTAAAT+TGG | - | chr8.4:8891434-8891453 | MS.gene57567:CDS | 25.0% |
| ! | CATTGCAAAAATTTATACAG+TGG | - | chr8.4:8892010-8892029 | MS.gene57567:intron | 25.0% |
| ! | TAACATCCAACAGTTAATAA+TGG | - | chr8.4:8890978-8890997 | MS.gene57567:intron | 25.0% |
| ! | TACTCTATATTCTTGTTCTA+AGG | - | chr8.4:8891601-8891620 | MS.gene57567:intron | 25.0% |
| ! | TAGTTTATTTCCATACTTGT+TGG | + | chr8.4:8889790-8889809 | None:intergenic | 25.0% |
| ! | TCAAAAGAAATAACTCACAA+GGG | + | chr8.4:8888563-8888582 | None:intergenic | 25.0% |
| ! | TGTAAATACAAATAACATGC+AGG | - | chr8.4:8889562-8889581 | MS.gene57567:intron | 25.0% |
| ! | TGTTTCACTTTCAAAAAAAG+AGG | + | chr8.4:8891727-8891746 | None:intergenic | 25.0% |
| ! | TTCAAAAGAAATAACTCACA+AGG | + | chr8.4:8888564-8888583 | None:intergenic | 25.0% |
| ! | TTTGGGCTTCATTATAAAAT+GGG | - | chr8.4:8891106-8891125 | MS.gene57567:intron | 25.0% |
| !! | AATTGTGGCAAATTTTATGA+AGG | - | chr8.4:8892681-8892700 | MS.gene57567:intron | 25.0% |
| !! | GATTATGTTTTCCAATATCT+AGG | - | chr8.4:8889999-8890018 | MS.gene57567:CDS | 25.0% |
| !! | GCTTTTATGTTCAAAGATTT+TGG | - | chr8.4:8889016-8889035 | MS.gene57567:intron | 25.0% |
| !! | TAAGTATGGACTAAAATGTA+TGG | + | chr8.4:8890576-8890595 | None:intergenic | 25.0% |
| !! | TTACGTTTTCAATGTTACAT+TGG | - | chr8.4:8890869-8890888 | MS.gene57567:intron | 25.0% |
| !! | TTTGAAAGGGTAAGAATTTT+GGG | - | chr8.4:8892233-8892252 | MS.gene57567:intron | 25.0% |
| !! | TTTTGGGCTTCATTATAAAA+TGG | - | chr8.4:8891105-8891124 | MS.gene57567:intron | 25.0% |
| !!! | AATTTTGTTTGCTAGTTATC+TGG | - | chr8.4:8888696-8888715 | MS.gene57567:CDS | 25.0% |
| !!! | GTATTATGATTTTTTGCTGT+TGG | + | chr8.4:8889767-8889786 | None:intergenic | 25.0% |
| !!! | TACTTGTTTTCAGTTTTTGA+GGG | - | chr8.4:8891797-8891816 | MS.gene57567:intron | 25.0% |
| !!! | TGTGTATATTGTTTTTTTGG+GGG | + | chr8.4:8890913-8890932 | None:intergenic | 25.0% |
| !!! | TTACTTGTTTTCAGTTTTTG+AGG | - | chr8.4:8891796-8891815 | MS.gene57567:intron | 25.0% |
| AAAACTATTTGCAGGATGAT+AGG | + | chr8.4:8890675-8890694 | None:intergenic | 30.0% | |
| AAAATTTACAACAAATGGGG+TGG | - | chr8.4:8890252-8890271 | MS.gene57567:intron | 30.0% | |
| AACTCGGTTTCTATTTGATA+AGG | - | chr8.4:8890167-8890186 | MS.gene57567:intron | 30.0% | |
| AATATCAGAGAAACTAACCT+TGG | + | chr8.4:8889877-8889896 | None:intergenic | 30.0% | |
| ACATTCTTCTACTCCAATTT+AGG | + | chr8.4:8891450-8891469 | None:intergenic | 30.0% | |
| ACTCGGTTTCTATTTGATAA+GGG | - | chr8.4:8890168-8890187 | MS.gene57567:intron | 30.0% | |
| ACTCTTGTAATGAAGATGAA+AGG | + | chr8.4:8891988-8892007 | None:intergenic | 30.0% | |
| AGTGAAGGTTCATTTGAATT+TGG | - | chr8.4:8890402-8890421 | MS.gene57567:intron | 30.0% | |
| ATCATAATACCCAACAAGTA+TGG | - | chr8.4:8889777-8889796 | MS.gene57567:intron | 30.0% | |
| CAATAATTGCCATAACTCTA+CGG | + | chr8.4:8890488-8890507 | None:intergenic | 30.0% | |
| CATTTGAATTTGGCAACTAT+TGG | - | chr8.4:8890412-8890431 | MS.gene57567:intron | 30.0% | |
| CTAAATGCTCAGTATATACA+TGG | + | chr8.4:8892648-8892667 | None:intergenic | 30.0% | |
| CTAATGACAAAGTCCAATTT+GGG | - | chr8.4:8889126-8889145 | MS.gene57567:intron | 30.0% | |
| CTCTTGTAATGAAGATGAAA+GGG | + | chr8.4:8891987-8892006 | None:intergenic | 30.0% | |
| GAAATGCTTTCAAGAAATTC+AGG | - | chr8.4:8891476-8891495 | MS.gene57567:CDS | 30.0% | |
| GCATCATTAAAACTATTTGC+AGG | + | chr8.4:8890683-8890702 | None:intergenic | 30.0% | |
| GTAACATTGAAAACGTAAAG+CGG | + | chr8.4:8890867-8890886 | None:intergenic | 30.0% | |
| GTAATGTTCCAATGTTTCTT+AGG | - | chr8.4:8891171-8891190 | MS.gene57567:CDS | 30.0% | |
| GTAGAGTTATGGCAATTATT+GGG | - | chr8.4:8890487-8890506 | MS.gene57567:intron | 30.0% | |
| TCTAATACATACGGATAACT+AGG | + | chr8.4:8889404-8889423 | None:intergenic | 30.0% | |
| TCTAATGACAAAGTCCAATT+TGG | - | chr8.4:8889125-8889144 | MS.gene57567:intron | 30.0% | |
| TTCATCCATTTGCAAAACTT+AGG | - | chr8.4:8890305-8890324 | MS.gene57567:intron | 30.0% | |
| ! | AAAAGTTCTGACAAGATCAA+TGG | + | chr8.4:8892196-8892215 | None:intergenic | 30.0% |
| ! | ACGATATGTAACTTGTGATT+CGG | + | chr8.4:8892613-8892632 | None:intergenic | 30.0% |
| ! | ATGAAGGAAACTTTTGCAAA+GGG | - | chr8.4:8892697-8892716 | MS.gene57567:intron | 30.0% |
| ! | GATCATTCATAATGCTACTT+AGG | + | chr8.4:8889689-8889708 | None:intergenic | 30.0% |
| ! | TATGAAGGAAACTTTTGCAA+AGG | - | chr8.4:8892696-8892715 | MS.gene57567:intron | 30.0% |
| ! | TCACATCAATCTTCTTTTGT+AGG | - | chr8.4:8891822-8891841 | MS.gene57567:intron | 30.0% |
| ! | TTTTCATAAGCTCTCTCAAA+CGG | + | chr8.4:8888830-8888849 | None:intergenic | 30.0% |
| !! | CTTTGAAAGGGTAAGAATTT+TGG | - | chr8.4:8892232-8892251 | MS.gene57567:intron | 30.0% |
| !! | TGAATTGTTTCTGTATCTTG+AGG | - | chr8.4:8891221-8891240 | MS.gene57567:CDS | 30.0% |
| !! | TTGAGCTTGTTATTTATTGC+AGG | - | chr8.4:8891533-8891552 | MS.gene57567:intron | 30.0% |
| !!! | AGTGCTTTTAAGTTGTTCAT+TGG | - | chr8.4:8888643-8888662 | MS.gene57567:CDS | 30.0% |
| !!! | CAAATAGTTTTAATGATGCG+TGG | - | chr8.4:8890684-8890703 | MS.gene57567:intron | 30.0% |
| !!! | CTGATGATGTCTTTTTTTCT+GGG | + | chr8.4:8890120-8890139 | None:intergenic | 30.0% |
| !!! | TATGATTTTTTGCTGTTGGA+TGG | + | chr8.4:8889763-8889782 | None:intergenic | 30.0% |
| AAAGGTTTGTCGTGTTACAA+TGG | - | chr8.4:8890516-8890535 | MS.gene57567:intron | 35.0% | |
| ACGTATTATGAGACGTGTTA+TGG | + | chr8.4:8892512-8892531 | None:intergenic | 35.0% | |
| ATACATACGGATAACTAGGA+AGG | + | chr8.4:8889400-8889419 | None:intergenic | 35.0% | |
| ATCTTCAACTTCCTAGTTAC+AGG | - | chr8.4:8889500-8889519 | MS.gene57567:intron | 35.0% | |
| ATGAAAGGGTGAAACTGTAA+AGG | + | chr8.4:8891973-8891992 | None:intergenic | 35.0% | |
| CACAAGTTACATATCGTCAA+AGG | - | chr8.4:8892616-8892635 | MS.gene57567:intron | 35.0% | |
| CAGTCAACATTTAACCCAAA+TGG | + | chr8.4:8888623-8888642 | None:intergenic | 35.0% | |
| CCAGAAAAAAAGACATCATC+AGG | - | chr8.4:8890118-8890137 | MS.gene57567:intron | 35.0% | |
| CGTAGAGTTATGGCAATTAT+TGG | - | chr8.4:8890486-8890505 | MS.gene57567:intron | 35.0% | |
| CTTACAAGTGATTATGCTAC+CGG | + | chr8.4:8888806-8888825 | None:intergenic | 35.0% | |
| GAATGCCCATTATTAACTGT+TGG | + | chr8.4:8890987-8891006 | None:intergenic | 35.0% | |
| GAGTAAAACAAATCAAGGCA+AGG | + | chr8.4:8891586-8891605 | None:intergenic | 35.0% | |
| GATACTGTCTTCCTAGATAT+TGG | + | chr8.4:8890013-8890032 | None:intergenic | 35.0% | |
| GATGCTAAGAATGATGTTGT+TGG | + | chr8.4:8891691-8891710 | None:intergenic | 35.0% | |
| GCATAGGATAACAATCTCTT+TGG | + | chr8.4:8889838-8889857 | None:intergenic | 35.0% | |
| GCTAATGTGACACTCAATAA+GGG | + | chr8.4:8890810-8890829 | None:intergenic | 35.0% | |
| GCTGAAAAATGCTTCCATTT+GGG | - | chr8.4:8888606-8888625 | MS.gene57567:CDS | 35.0% | |
| GCTTAGTTTCAGTAGGAAAA+TGG | - | chr8.4:8889223-8889242 | MS.gene57567:intron | 35.0% | |
| TCTGACAAGATCAATGGATA+AGG | + | chr8.4:8892190-8892209 | None:intergenic | 35.0% | |
| TCTTTAATGAGCCTGTAACT+AGG | + | chr8.4:8889514-8889533 | None:intergenic | 35.0% | |
| TGAATTTGGCAACTATTGGA+GGG | - | chr8.4:8890416-8890435 | MS.gene57567:intron | 35.0% | |
| TGCATGGATGATTAAATGCA+CGG | + | chr8.4:8891419-8891438 | None:intergenic | 35.0% | |
| TGCTAATGTGACACTCAATA+AGG | + | chr8.4:8890811-8890830 | None:intergenic | 35.0% | |
| TGCTGAAAAATGCTTCCATT+TGG | - | chr8.4:8888605-8888624 | MS.gene57567:CDS | 35.0% | |
| TGTGTTCTTACAACATCCTA+CGG | + | chr8.4:8889323-8889342 | None:intergenic | 35.0% | |
| TTGAATTTGGCAACTATTGG+AGG | - | chr8.4:8890415-8890434 | MS.gene57567:intron | 35.0% | |
| TTTCCTACTGAAACTAAGCT+AGG | + | chr8.4:8889222-8889241 | None:intergenic | 35.0% | |
| TTTCCTAGCTTAGTTTCAGT+AGG | - | chr8.4:8889216-8889235 | MS.gene57567:intron | 35.0% | |
| ! | GATAGCCTAAGTTTTGCAAA+TGG | + | chr8.4:8890313-8890332 | None:intergenic | 35.0% |
| ! | TCGTCTTGGAAACAACTTTT+TGG | - | chr8.4:8891344-8891363 | MS.gene57567:intron | 35.0% |
| !! | ATTGAGTTGAAGACTAAGTC+AGG | - | chr8.4:8891390-8891409 | MS.gene57567:intron | 35.0% |
| !! | CTTTTTGGAGAGAATCAGAA+AGG | - | chr8.4:8891359-8891378 | MS.gene57567:intron | 35.0% |
| !! | GTTCATTGGCTCTATATGTT+TGG | - | chr8.4:8888657-8888676 | MS.gene57567:CDS | 35.0% |
| !! | GTTCTGAACTCTCTTTTAGT+AGG | - | chr8.4:8889148-8889167 | MS.gene57567:intron | 35.0% |
| !! | TATGTAACTTGTGATTCGGT+AGG | + | chr8.4:8892609-8892628 | None:intergenic | 35.0% |
| !!! | CCTGATGATGTCTTTTTTTC+TGG | + | chr8.4:8890121-8890140 | None:intergenic | 35.0% |
| AAATGAACCTTCACTTTCCC+TGG | + | chr8.4:8890397-8890416 | None:intergenic | 40.0% | |
| AACAAATCAAGGCAAGGCTA+TGG | + | chr8.4:8891580-8891599 | None:intergenic | 40.0% | |
| ACGCACTTCCTAAGAAACAT+TGG | + | chr8.4:8891182-8891201 | None:intergenic | 40.0% | |
| AGAGAGTTCAGAACCCAAAT+TGG | + | chr8.4:8889142-8889161 | None:intergenic | 40.0% | |
| AGTGAACGGTGAAAGTTCTT+GGG | - | chr8.4:8892037-8892056 | MS.gene57567:intron | 40.0% | |
| ATCAGAGAAACTAACCTTGG+AGG | + | chr8.4:8889874-8889893 | None:intergenic | 40.0% | |
| ATGTGACACTCAATAAGGGA+CGG | + | chr8.4:8890806-8890825 | None:intergenic | 40.0% | |
| ATTGACAAAGAATGCAGGTG+TGG | - | chr8.4:8891921-8891940 | MS.gene57567:intron | 40.0% | |
| CATTTCCAGTGAAGTCAAAG+CGG | + | chr8.4:8890083-8890102 | None:intergenic | 40.0% | |
| GAGATTGTTATCCTATGCCA+CGG | - | chr8.4:8889840-8889859 | MS.gene57567:intron | 40.0% | |
| GCAATTATTGGGCACAGTAA+AGG | - | chr8.4:8890498-8890517 | MS.gene57567:intron | 40.0% | |
| GTAGGCAAATTACATGAAGC+TGG | - | chr8.4:8889810-8889829 | MS.gene57567:intron | 40.0% | |
| GTGGCAAACTGGCAATATAT+AGG | - | chr8.4:8890703-8890722 | MS.gene57567:intron | 40.0% | |
| TATACAGTGGGATCAGTGAA+CGG | - | chr8.4:8892023-8892042 | MS.gene57567:intron | 40.0% | |
| TGAAGCAAACCGTAGAGTTA+TGG | - | chr8.4:8890476-8890495 | MS.gene57567:intron | 40.0% | |
| TGCAGATTGACAAAGAATGC+AGG | - | chr8.4:8891916-8891935 | MS.gene57567:intron | 40.0% | |
| TGCATTCTTTGTCAATCTGC+AGG | + | chr8.4:8891917-8891936 | None:intergenic | 40.0% | |
| TGGAGAGAATCAGAAAGGAA+GGG | - | chr8.4:8891364-8891383 | MS.gene57567:intron | 40.0% | |
| TGTTTCCAAGACGATCTTCA+AGG | + | chr8.4:8891338-8891357 | None:intergenic | 40.0% | |
| TTGAAGACTCAGCAAGTATC+TGG | + | chr8.4:8890553-8890572 | None:intergenic | 40.0% | |
| TTGACAAAGAATGCAGGTGT+GGG | - | chr8.4:8891922-8891941 | MS.gene57567:intron | 40.0% | |
| TTGGAGAGAATCAGAAAGGA+AGG | - | chr8.4:8891363-8891382 | MS.gene57567:intron | 40.0% | |
| TTTAATGATGCGTGGCAAAC+TGG | - | chr8.4:8890692-8890711 | MS.gene57567:intron | 40.0% | |
| ! | AGCTGAGTTAGCTTCAATTG+TGG | - | chr8.4:8892666-8892685 | MS.gene57567:intron | 40.0% |
| ! | ATGTTTCTTAGGAAGTGCGT+AGG | - | chr8.4:8891182-8891201 | MS.gene57567:CDS | 40.0% |
| ! | GCTTTGACTTCACTGGAAAT+GGG | - | chr8.4:8890082-8890101 | MS.gene57567:intron | 40.0% |
| ! | GTCTGTGAATCGATGTCTTT+TGG | - | chr8.4:8890775-8890794 | MS.gene57567:CDS | 40.0% |
| ! | TGTTGATTATCGCATAACCG+AGG | - | chr8.4:8891848-8891867 | MS.gene57567:intron | 40.0% |
| !! | CATTGGCTCTATATGTTTGG+AGG | - | chr8.4:8888660-8888679 | MS.gene57567:CDS | 40.0% |
| !! | TCCTATAAGGCATTGTAGTG+CGG | + | chr8.4:8889177-8889196 | None:intergenic | 40.0% |
| !! | TTGTTTCTGTATCTTGAGGC+AGG | - | chr8.4:8891225-8891244 | MS.gene57567:CDS | 40.0% |
| !!! | AGCTTTTGAGTTTCTCTTCC+AGG | - | chr8.4:8890376-8890395 | MS.gene57567:intron | 40.0% |
| !!! | GCTTTTGAGTTTCTCTTCCA+GGG | - | chr8.4:8890377-8890396 | MS.gene57567:intron | 40.0% |
| !!! | TTGTTTTTTTGGGGGAGAAC+TGG | + | chr8.4:8890905-8890924 | None:intergenic | 40.0% |
| AAAACAGTTGCCAACCTCTC+TGG | - | chr8.4:8891291-8891310 | MS.gene57567:intron | 45.0% | |
| AAACCCTGACTTCTGTCATC+AGG | + | chr8.4:8890287-8890306 | None:intergenic | 45.0% | |
| AGCTTCCAATGGTCACACAT+GGG | - | chr8.4:8889272-8889291 | MS.gene57567:intron | 45.0% | |
| AGGGTGAAACTGTAAAGGAG+AGG | + | chr8.4:8891968-8891987 | None:intergenic | 45.0% | |
| ATTTGGCAACTATTGGAGGG+AGG | - | chr8.4:8890419-8890438 | MS.gene57567:intron | 45.0% | |
| CACGTCTCATAATACGTGAC+AGG | - | chr8.4:8892515-8892534 | MS.gene57567:intron | 45.0% | |
| CAGTGAACGGTGAAAGTTCT+TGG | - | chr8.4:8892036-8892055 | MS.gene57567:intron | 45.0% | |
| CATAACCGAGGAAAGCTTGA+AGG | - | chr8.4:8891860-8891879 | MS.gene57567:intron | 45.0% | |
| CTCTGGTCGCTATGATCTAA+AGG | - | chr8.4:8891308-8891327 | MS.gene57567:intron | 45.0% | |
| GAAACAGCTCATACACGAGA+AGG | - | chr8.4:8891741-8891760 | MS.gene57567:intron | 45.0% | |
| TCGATCCTTCAAGCTTTCCT+CGG | + | chr8.4:8891868-8891887 | None:intergenic | 45.0% | |
| TGGGAAACCTTCGTTGCATA+CGG | - | chr8.4:8889291-8889310 | MS.gene57567:intron | 45.0% | |
| TGTCCTGATGACAGAAGTCA+GGG | - | chr8.4:8890281-8890300 | MS.gene57567:intron | 45.0% | |
| TTAACATCCGCAGCTTCCAA+TGG | - | chr8.4:8889261-8889280 | MS.gene57567:intron | 45.0% | |
| TTAGATCATAGCGACCAGAG+AGG | + | chr8.4:8891308-8891327 | None:intergenic | 45.0% | |
| TTCTCTTCCAGGGAAAGTGA+AGG | - | chr8.4:8890387-8890406 | MS.gene57567:intron | 45.0% | |
| TTGTCCTGATGACAGAAGTC+AGG | - | chr8.4:8890280-8890299 | MS.gene57567:intron | 45.0% | |
| ! | CGCTTTGACTTCACTGGAAA+TGG | - | chr8.4:8890081-8890100 | MS.gene57567:intron | 45.0% |
| ! | TCTTTCCGCTTTGACTTCAC+TGG | - | chr8.4:8890075-8890094 | MS.gene57567:intron | 45.0% |
| !! | CCTATAAGGCATTGTAGTGC+GGG | + | chr8.4:8889176-8889195 | None:intergenic | 45.0% |
| AACTCAAGTGCGTCTCCAAC+GGG | + | chr8.4:8892577-8892596 | None:intergenic | 50.0% | |
| ATCATAGCGACCAGAGAGGT+TGG | + | chr8.4:8891304-8891323 | None:intergenic | 50.0% | |
| CAGCTTCCAATGGTCACACA+TGG | - | chr8.4:8889271-8889290 | MS.gene57567:intron | 50.0% | |
| CCCGCACTACAATGCCTTAT+AGG | - | chr8.4:8889173-8889192 | MS.gene57567:intron | 50.0% | |
| GAACTCAAGTGCGTCTCCAA+CGG | + | chr8.4:8892578-8892597 | None:intergenic | 50.0% | |
| GCGGACACAATAATTCCCGT+TGG | - | chr8.4:8892559-8892578 | MS.gene57567:intron | 50.0% | |
| GCTAAGACCGTATGCAACGA+AGG | + | chr8.4:8889301-8889320 | None:intergenic | 50.0% | |
| GGTCGCTATGATCTAAAGGC+AGG | - | chr8.4:8891312-8891331 | MS.gene57567:intron | 50.0% | |
| GGTTTCCCATGTGTGACCAT+TGG | + | chr8.4:8889280-8889299 | None:intergenic | 50.0% | |
| TCTTGAGGCAGGAGCTAATG+TGG | - | chr8.4:8891236-8891255 | MS.gene57567:intron | 50.0% | |
| TGTGTGACCATTGGAAGCTG+CGG | + | chr8.4:8889271-8889290 | None:intergenic | 50.0% | |
| TTGCATACGGTCTTAGCCGT+AGG | - | chr8.4:8889304-8889323 | MS.gene57567:intron | 50.0% | |
| ! | CCTTACTGTTCATGGTGACG+CGG | - | chr8.4:8892540-8892559 | MS.gene57567:intron | 50.0% |
| ! | GCTGCTGCTCTAGATAATGC+AGG | - | chr8.4:8890045-8890064 | MS.gene57567:intron | 50.0% |
| CCGCGTCACCATGAACAGTA+AGG | + | chr8.4:8892543-8892562 | None:intergenic | 55.0% | |
| GCAGGCCTTGAAGATCGTCT+TGG | - | chr8.4:8891330-8891349 | MS.gene57567:intron | 55.0% | |
| AGGCTCGAAGACCGTGGCAT+AGG | + | chr8.4:8889854-8889873 | None:intergenic | 60.0% | |
| CCACGGTCTTCGAGCCTCCA+AGG | - | chr8.4:8889857-8889876 | MS.gene57567:intron | 65.0% | |
| CCTTGGAGGCTCGAAGACCG+TGG | + | chr8.4:8889860-8889879 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 8888540 | 8892729 | 8888540 | ID=MS.gene57567 |
| chr8.4 | mRNA | 8888540 | 8892729 | 8888540 | ID=MS.gene57567.t1;Parent=MS.gene57567 |
| chr8.4 | exon | 8892705 | 8892729 | 8892705 | ID=MS.gene57567.t1.exon1;Parent=MS.gene57567.t1 |
| chr8.4 | CDS | 8892705 | 8892729 | 8892705 | ID=cds.MS.gene57567.t1;Parent=MS.gene57567.t1 |
| chr8.4 | exon | 8891391 | 8891509 | 8891391 | ID=MS.gene57567.t1.exon2;Parent=MS.gene57567.t1 |
| chr8.4 | CDS | 8891391 | 8891509 | 8891391 | ID=cds.MS.gene57567.t1;Parent=MS.gene57567.t1 |
| chr8.4 | exon | 8891166 | 8891248 | 8891166 | ID=MS.gene57567.t1.exon3;Parent=MS.gene57567.t1 |
| chr8.4 | CDS | 8891166 | 8891248 | 8891166 | ID=cds.MS.gene57567.t1;Parent=MS.gene57567.t1 |
| chr8.4 | exon | 8890750 | 8890871 | 8890750 | ID=MS.gene57567.t1.exon4;Parent=MS.gene57567.t1 |
| chr8.4 | CDS | 8890750 | 8890871 | 8890750 | ID=cds.MS.gene57567.t1;Parent=MS.gene57567.t1 |
| chr8.4 | exon | 8889858 | 8890022 | 8889858 | ID=MS.gene57567.t1.exon5;Parent=MS.gene57567.t1 |
| chr8.4 | CDS | 8889858 | 8890022 | 8889858 | ID=cds.MS.gene57567.t1;Parent=MS.gene57567.t1 |
| chr8.4 | exon | 8889332 | 8889425 | 8889332 | ID=MS.gene57567.t1.exon6;Parent=MS.gene57567.t1 |
| chr8.4 | CDS | 8889332 | 8889425 | 8889332 | ID=cds.MS.gene57567.t1;Parent=MS.gene57567.t1 |
| chr8.4 | exon | 8888540 | 8888732 | 8888540 | ID=MS.gene57567.t1.exon7;Parent=MS.gene57567.t1 |
| chr8.4 | CDS | 8888540 | 8888732 | 8888540 | ID=cds.MS.gene57567.t1;Parent=MS.gene57567.t1 |
| Gene Sequence |
| Protein sequence |
