Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030405.t1 | AFK47457.1 | 95.6 | 250 | 11 | 0 | 1 | 250 | 1 | 250 | 2.40E-132 | 481.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030405.t1 | Q9ZRT5 | 71.3 | 223 | 64 | 0 | 1 | 223 | 2 | 224 | 1.8e-91 | 337.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030405.t1 | I3T4L5 | 95.6 | 250 | 11 | 0 | 1 | 250 | 1 | 250 | 1.7e-132 | 481.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene030405 | MS.gene48030 | PPI |
| MS.gene030405 | MS.gene019183 | PPI |
| MS.gene030405 | MS.gene83384 | PPI |
| MS.gene030405 | MS.gene47714 | PPI |
| MS.gene030405 | MS.gene69499 | PPI |
| MS.gene030405 | MS.gene48032 | PPI |
| MS.gene030405 | MS.gene038277 | PPI |
| MS.gene030405 | MS.gene017062 | PPI |
| MS.gene000510 | MS.gene030405 | PPI |
| MS.gene030405 | MS.gene22195 | PPI |
| MS.gene030405 | MS.gene69505 | PPI |
| MS.gene030405 | MS.gene017060 | PPI |
| MS.gene030405 | MS.gene019181 | PPI |
| MS.gene030405 | MS.gene22188 | PPI |
| MS.gene030405 | MS.gene22196 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030405.t1 | MTR_8g098420 | 95.200 | 250 | 12 | 0 | 1 | 250 | 1 | 250 | 2.27e-179 | 493 |
| MS.gene030405.t1 | MTR_8g098420 | 96.133 | 181 | 7 | 0 | 1 | 181 | 1 | 181 | 1.70e-127 | 359 |
| MS.gene030405.t1 | MTR_8g098430 | 69.565 | 230 | 70 | 0 | 2 | 231 | 4 | 233 | 5.50e-121 | 345 |
| MS.gene030405.t1 | MTR_3g450930 | 31.579 | 171 | 113 | 3 | 1 | 171 | 1 | 167 | 5.85e-19 | 82.8 |
| MS.gene030405.t1 | MTR_3g450790 | 27.907 | 215 | 147 | 5 | 1 | 215 | 1 | 207 | 3.85e-18 | 80.5 |
| MS.gene030405.t1 | MTR_3g064700 | 27.143 | 210 | 146 | 3 | 1 | 210 | 1 | 203 | 2.07e-14 | 70.5 |
| MS.gene030405.t1 | MTR_5g090920 | 25.346 | 217 | 151 | 7 | 1 | 215 | 1 | 208 | 1.24e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030405.t1 | AT5G41210 | 71.300 | 223 | 64 | 0 | 1 | 223 | 2 | 224 | 3.87e-121 | 345 |
| MS.gene030405.t1 | AT5G41240 | 70.354 | 226 | 67 | 0 | 1 | 226 | 1 | 226 | 1.90e-114 | 340 |
| MS.gene030405.t1 | AT5G41220 | 68.000 | 225 | 72 | 0 | 1 | 225 | 1 | 225 | 1.17e-110 | 330 |
| MS.gene030405.t1 | AT5G41220 | 66.474 | 173 | 58 | 0 | 53 | 225 | 3 | 175 | 1.13e-81 | 254 |
| MS.gene030405.t1 | AT5G41220 | 65.217 | 161 | 56 | 0 | 65 | 225 | 7 | 167 | 4.01e-74 | 234 |
| MS.gene030405.t1 | AT2G30870 | 32.164 | 171 | 112 | 3 | 1 | 171 | 1 | 167 | 1.64e-22 | 92.4 |
| MS.gene030405.t1 | AT2G30860 | 31.579 | 171 | 113 | 3 | 1 | 171 | 1 | 167 | 2.35e-19 | 84.0 |
| MS.gene030405.t1 | AT2G30860 | 30.405 | 148 | 102 | 1 | 1 | 148 | 1 | 147 | 1.61e-18 | 80.5 |
| MS.gene030405.t1 | AT1G02920 | 30.732 | 205 | 124 | 5 | 3 | 201 | 4 | 196 | 3.13e-16 | 75.5 |
| MS.gene030405.t1 | AT1G02930 | 32.484 | 157 | 103 | 2 | 3 | 159 | 4 | 157 | 1.75e-15 | 73.2 |
| MS.gene030405.t1 | AT1G02930 | 32.484 | 157 | 103 | 2 | 3 | 159 | 4 | 157 | 1.75e-15 | 73.2 |
| MS.gene030405.t1 | AT1G49860 | 29.319 | 191 | 126 | 5 | 19 | 205 | 20 | 205 | 9.34e-15 | 72.0 |
| MS.gene030405.t1 | AT2G02930 | 29.412 | 204 | 131 | 5 | 3 | 201 | 4 | 199 | 1.16e-13 | 68.2 |
| MS.gene030405.t1 | AT3G03190 | 30.814 | 172 | 114 | 3 | 1 | 171 | 1 | 168 | 1.82e-13 | 67.8 |
| MS.gene030405.t1 | AT4G02520 | 27.723 | 202 | 137 | 4 | 3 | 201 | 4 | 199 | 2.31e-13 | 67.4 |
| MS.gene030405.t1 | AT5G17220 | 32.558 | 172 | 111 | 4 | 1 | 171 | 1 | 168 | 4.04e-13 | 67.0 |
Find 63 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTGTACTAGCTCCATTAT+TGG | 0.222340 | 4.4:+6200639 | MS.gene030405:CDS |
| AATGATTATGATCGTCTTCT+TGG | 0.230358 | 4.4:+6201005 | MS.gene030405:CDS |
| TATCTTGCTTCTGCATTTCC+TGG | 0.241180 | 4.4:+6199701 | MS.gene030405:CDS |
| AATCACATTCTCGAAGTTAT+AGG | 0.255543 | 4.4:-6201185 | None:intergenic |
| ATCACATTCTCGAAGTTATA+GGG | 0.262925 | 4.4:-6201184 | None:intergenic |
| CTGCTCCACGGCGCAAATTC+AGG | 0.298815 | 4.4:-6200122 | None:intergenic |
| ATAGAGAACATTTGGCTTAA+GGG | 0.303430 | 4.4:+6200727 | MS.gene030405:CDS |
| GGTACCCAGCTGACGTTTCC+AGG | 0.325552 | 4.4:+6200064 | MS.gene030405:intron |
| AATAGAGAACATTTGGCTTA+AGG | 0.353062 | 4.4:+6200726 | MS.gene030405:CDS |
| CTGAATTTGCGCCGTGGAGC+AGG | 0.368387 | 4.4:+6200123 | MS.gene030405:CDS |
| ACAGATGGGGAAATGAAATC+TGG | 0.378165 | 4.4:+6201152 | MS.gene030405:CDS |
| CTGCGAAATTATGCAATTAC+AGG | 0.378649 | 4.4:+6200807 | MS.gene030405:CDS |
| TGTCCACAATAGAGAACATT+TGG | 0.391398 | 4.4:+6200719 | MS.gene030405:CDS |
| CACTTATCTTCTGAGTTTCA+AGG | 0.400481 | 4.4:+6199161 | MS.gene030405:CDS |
| CGCGTGAATTCTAGCTCTCC+TGG | 0.415990 | 4.4:-6200082 | None:intergenic |
| ACTGTACTAGCTCCATTATT+GGG | 0.419661 | 4.4:+6200640 | MS.gene030405:CDS |
| AGAAGATAAGTGCTGACGTT+TGG | 0.421319 | 4.4:-6199150 | None:intergenic |
| GAATTCACGCGGTGTTAGAT+TGG | 0.424651 | 4.4:+6200094 | MS.gene030405:CDS |
| TCTAGTGGTAGACCCAATAA+TGG | 0.430522 | 4.4:-6200652 | None:intergenic |
| GCTCTCCTGGAAACGTCAGC+TGG | 0.434410 | 4.4:-6200069 | None:intergenic |
| TAAGAATCGCACGAGATGGC+TGG | 0.434704 | 4.4:-6198987 | None:intergenic |
| GACGTTTGGAAAGTTCGATA+TGG | 0.436029 | 4.4:-6199136 | None:intergenic |
| AAAGTGCCTGCTATTGTTGA+TGG | 0.442576 | 4.4:+6199284 | MS.gene030405:CDS |
| GCCTCAATTTGAGCTTATAG+AGG | 0.464521 | 4.4:-6201106 | None:intergenic |
| AAGCCAAATGTTCTCTATTG+TGG | 0.481096 | 4.4:-6200722 | None:intergenic |
| TTCCTGGAGTTGCACACCAT+TGG | 0.483640 | 4.4:+6199717 | MS.gene030405:CDS |
| TAGCAGGCACTTTCTTGAAA+GGG | 0.498202 | 4.4:-6199274 | None:intergenic |
| ATAGCAGGCACTTTCTTGAA+AGG | 0.499112 | 4.4:-6199275 | None:intergenic |
| ACTGCTGAACTTTCTTGTGC+GGG | 0.510595 | 4.4:-6201028 | None:intergenic |
| CACTGCTGAACTTTCTTGTG+CGG | 0.511688 | 4.4:-6201029 | None:intergenic |
| AACATTTGGCTTAAGGGTGA+CGG | 0.516834 | 4.4:+6200733 | MS.gene030405:CDS |
| TTCCATAGCGGATCTCAGCC+TGG | 0.518231 | 4.4:+6200783 | MS.gene030405:CDS |
| CACGAGATGGCTGGGACATA+CGG | 0.524178 | 4.4:-6198978 | None:intergenic |
| GACGGGCAATACTTGCTTGG+TGG | 0.525091 | 4.4:+6200751 | MS.gene030405:CDS |
| TACCAATGGTGTGCAACTCC+AGG | 0.526131 | 4.4:-6199719 | None:intergenic |
| AGCAATCTAGTCAGACAGAT+GGG | 0.528693 | 4.4:+6201138 | MS.gene030405:CDS |
| ACATTTGGCTTAAGGGTGAC+GGG | 0.529892 | 4.4:+6200734 | MS.gene030405:CDS |
| CTCTCCTGGAAACGTCAGCT+GGG | 0.534776 | 4.4:-6200068 | None:intergenic |
| ATTGCATAATTTCGCAGACC+AGG | 0.535370 | 4.4:-6200801 | None:intergenic |
| AACCTTCCATCAACAATAGC+AGG | 0.537384 | 4.4:-6199290 | None:intergenic |
| AAGAATCGCACGAGATGGCT+GGG | 0.538190 | 4.4:-6198986 | None:intergenic |
| CAGATGGGGAAATGAAATCT+GGG | 0.545472 | 4.4:+6201153 | MS.gene030405:CDS |
| GCAGCTGCTTGCTTGTCTAG+TGG | 0.546186 | 4.4:-6200667 | None:intergenic |
| TTATGAACTTCATGAAAATG+TGG | 0.556304 | 4.4:-6201080 | None:intergenic |
| TCACATTCTCGAAGTTATAG+GGG | 0.557900 | 4.4:-6201183 | None:intergenic |
| TCTAAATTCCATAGAGTCAA+CGG | 0.561391 | 4.4:+6199095 | MS.gene030405:intron |
| GACCAGGCTGAGATCCGCTA+TGG | 0.574973 | 4.4:-6200785 | None:intergenic |
| GGTGACGGGCAATACTTGCT+TGG | 0.582776 | 4.4:+6200748 | MS.gene030405:CDS |
| AAGCAATCTAGTCAGACAGA+TGG | 0.589247 | 4.4:+6201137 | MS.gene030405:CDS |
| TCCTCTATAAGCTCAAATTG+AGG | 0.590846 | 4.4:+6201105 | MS.gene030405:CDS |
| AAAATAAGAATCGCACGAGA+TGG | 0.596267 | 4.4:-6198991 | None:intergenic |
| CGCACAAGAAAGTTCAGCAG+TGG | 0.597331 | 4.4:+6201030 | MS.gene030405:CDS |
| AGGCTGAGATCCGCTATGGA+AGG | 0.607591 | 4.4:-6200781 | None:intergenic |
| GGAATAACGCACCTGCTCCA+CGG | 0.611210 | 4.4:-6200134 | None:intergenic |
| TGAGATCCGCTATGGAAGGT+CGG | 0.628543 | 4.4:-6200777 | None:intergenic |
| TACAGTATTTAGAACAAACC+CGG | 0.632448 | 4.4:-6200623 | None:intergenic |
| TGCCTGCTATTGTTGATGGA+AGG | 0.637587 | 4.4:+6199288 | MS.gene030405:CDS |
| CATCACCTGAATTTGCGCCG+TGG | 0.644810 | 4.4:+6200117 | MS.gene030405:CDS |
| CAGGAGAGCTAGAATTCACG+CGG | 0.651093 | 4.4:+6200083 | MS.gene030405:CDS |
| GCAATCTAGTCAGACAGATG+GGG | 0.657067 | 4.4:+6201139 | MS.gene030405:CDS |
| GATGAAGCTGAAAGTGTATG+CGG | 0.683286 | 4.4:+6198954 | None:intergenic |
| TGGCTTCCGACCTTCCATAG+CGG | 0.702512 | 4.4:+6200771 | MS.gene030405:CDS |
| GAAGGTTCAAGCTATTCGAG+AGG | 0.706131 | 4.4:+6199306 | MS.gene030405:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACAAAAAGTTTTAAAAAT+AGG | - | chr4.4:6200030-6200049 | None:intergenic | 10.0% |
| !! | ATTGAAATTAAGAAAATAGA+AGG | - | chr4.4:6199040-6199059 | None:intergenic | 15.0% |
| !!! | ATAAAAAAGATTTTGAAAGA+GGG | - | chr4.4:6199753-6199772 | None:intergenic | 15.0% |
| !!! | TACATGTATTTTTATTTTCA+TGG | + | chr4.4:6199201-6199220 | MS.gene030405:intron | 15.0% |
| !! | ACAATACAATATTTAGCTAA+TGG | - | chr4.4:6199841-6199860 | None:intergenic | 20.0% |
| !! | ATAAGTTAACTTAAAATCCA+TGG | - | chr4.4:6200445-6200464 | None:intergenic | 20.0% |
| !! | ATATTTCACCTAATATAGTT+TGG | + | chr4.4:6199578-6199597 | MS.gene030405:intron | 20.0% |
| !! | GAAAGAAAAATAAACAAAGA+GGG | - | chr4.4:6200170-6200189 | None:intergenic | 20.0% |
| !! | TGAAAGAAAAATAAACAAAG+AGG | - | chr4.4:6200171-6200190 | None:intergenic | 20.0% |
| !!! | ATTAGTAGTTTTATGAGAAT+GGG | + | chr4.4:6200514-6200533 | MS.gene030405:intron | 20.0% |
| !!! | CATAAAAAAGATTTTGAAAG+AGG | - | chr4.4:6199754-6199773 | None:intergenic | 20.0% |
| !!! | CATTTTCAATTGTATGAAAA+TGG | - | chr4.4:6199345-6199364 | None:intergenic | 20.0% |
| !!! | GATGAAAAGTTTTATGTTTT+AGG | - | chr4.4:6200854-6200873 | None:intergenic | 20.0% |
| !!! | TATTCTAAGGAACTTATATT+GGG | + | chr4.4:6199494-6199513 | MS.gene030405:intron | 20.0% |
| ! | AATATAACAAAGACGTGAAT+AGG | - | chr4.4:6199654-6199673 | None:intergenic | 25.0% |
| ! | ATCAAGTTAGCTAAAAATCA+TGG | + | chr4.4:6200297-6200316 | MS.gene030405:intron | 25.0% |
| ! | ATTATAAGCGCACTTAATTA+TGG | - | chr4.4:6199473-6199492 | None:intergenic | 25.0% |
| ! | GAATAAAATTTGCACACAAA+AGG | - | chr4.4:6200560-6200579 | None:intergenic | 25.0% |
| ! | TTATAAGCGCACTTAATTAT+GGG | - | chr4.4:6199472-6199491 | None:intergenic | 25.0% |
| ! | TTATGAACTTCATGAAAATG+TGG | - | chr4.4:6201083-6201102 | None:intergenic | 25.0% |
| !! | CTATTCTAAGGAACTTATAT+TGG | + | chr4.4:6199493-6199512 | MS.gene030405:intron | 25.0% |
| !! | TTGTGATAATGACATTTCTT+TGG | + | chr4.4:6200964-6200983 | MS.gene030405:intron | 25.0% |
| !!! | GATTAGTAGTTTTATGAGAA+TGG | + | chr4.4:6200513-6200532 | MS.gene030405:intron | 25.0% |
| !!! | TGTATTGTTTTGTATCAATC+TGG | + | chr4.4:6200414-6200433 | MS.gene030405:intron | 25.0% |
| !!! | TTTGTTTCATTGATTCCATT+AGG | + | chr4.4:6200043-6200062 | MS.gene030405:intron | 25.0% |
| AATGATTATGATCGTCTTCT+TGG | + | chr4.4:6201005-6201024 | MS.gene030405:CDS | 30.0% | |
| GTTAATCGCTGAAATGAAAA+TGG | - | chr4.4:6199255-6199274 | None:intergenic | 30.0% | |
| TCTAAATTCCATAGAGTCAA+CGG | + | chr4.4:6199095-6199114 | MS.gene030405:intron | 30.0% | |
| TGCGCTTATAATCTATTCTA+AGG | + | chr4.4:6199481-6199500 | MS.gene030405:intron | 30.0% | |
| ! | AATAGAGAACATTTGGCTTA+AGG | + | chr4.4:6200726-6200745 | MS.gene030405:CDS | 30.0% |
| ! | ATAGAGAACATTTGGCTTAA+GGG | + | chr4.4:6200727-6200746 | MS.gene030405:CDS | 30.0% |
| ! | TACAGTATTTAGAACAAACC+CGG | - | chr4.4:6200626-6200645 | None:intergenic | 30.0% |
| ! | TTGAAGCACCAAACTATATT+AGG | - | chr4.4:6199589-6199608 | None:intergenic | 30.0% |
| AAAAAATCCTCAACGAGTCA+TGG | - | chr4.4:6200880-6200899 | None:intergenic | 35.0% | |
| AAAACAAGTAGACTAGGTCA+TGG | - | chr4.4:6200595-6200614 | None:intergenic | 35.0% | |
| AAAATAAGAATCGCACGAGA+TGG | - | chr4.4:6198994-6199013 | None:intergenic | 35.0% | |
| AAGCCAAATGTTCTCTATTG+TGG | - | chr4.4:6200725-6200744 | None:intergenic | 35.0% | |
| ACAAAGGTTAAACTTACACG+AGG | - | chr4.4:6199923-6199942 | None:intergenic | 35.0% | |
| ACTGTACTAGCTCCATTATT+GGG | + | chr4.4:6200640-6200659 | MS.gene030405:CDS | 35.0% | |
| AGAGCAAAAACAAGTAGACT+AGG | - | chr4.4:6200601-6200620 | None:intergenic | 35.0% | |
| AGAGGGAAAATACTTACCAA+TGG | - | chr4.4:6199736-6199755 | None:intergenic | 35.0% | |
| ATCAGAAAATTCCACTAACG+AGG | - | chr4.4:6199879-6199898 | None:intergenic | 35.0% | |
| CACTTATCTTCTGAGTTTCA+AGG | + | chr4.4:6199161-6199180 | MS.gene030405:CDS | 35.0% | |
| CTGCGAAATTATGCAATTAC+AGG | + | chr4.4:6200807-6200826 | MS.gene030405:CDS | 35.0% | |
| GTAATGACTAGCATACACAA+AGG | - | chr4.4:6199939-6199958 | None:intergenic | 35.0% | |
| TACTGTACTAGCTCCATTAT+TGG | + | chr4.4:6200639-6200658 | MS.gene030405:CDS | 35.0% | |
| TCACATTCTCGAAGTTATAG+GGG | - | chr4.4:6201186-6201205 | None:intergenic | 35.0% | |
| TCAGAAAATTCCACTAACGA+GGG | - | chr4.4:6199878-6199897 | None:intergenic | 35.0% | |
| TCCTCTATAAGCTCAAATTG+AGG | + | chr4.4:6201105-6201124 | MS.gene030405:CDS | 35.0% | |
| TGTCCACAATAGAGAACATT+TGG | + | chr4.4:6200719-6200738 | MS.gene030405:CDS | 35.0% | |
| TTGTATGACTGCACTGAATA+AGG | - | chr4.4:6199998-6200017 | None:intergenic | 35.0% | |
| ! | TTTTTCTGCTGCGACTTTTT+TGG | - | chr4.4:6199388-6199407 | None:intergenic | 35.0% |
| AACCTTCCATCAACAATAGC+AGG | - | chr4.4:6199293-6199312 | None:intergenic | 40.0% | |
| AAGCAATCTAGTCAGACAGA+TGG | + | chr4.4:6201137-6201156 | MS.gene030405:CDS | 40.0% | |
| AAGCTATCCAGTTCAGAAAC+AGG | - | chr4.4:6200251-6200270 | None:intergenic | 40.0% | |
| ACAGATGGGGAAATGAAATC+TGG | + | chr4.4:6201152-6201171 | MS.gene030405:CDS | 40.0% | |
| AGCAATCTAGTCAGACAGAT+GGG | + | chr4.4:6201138-6201157 | MS.gene030405:CDS | 40.0% | |
| AGCAGATGACTGCATAAAGT+TGG | + | chr4.4:6200353-6200372 | MS.gene030405:intron | 40.0% | |
| ATAGCAGGCACTTTCTTGAA+AGG | - | chr4.4:6199278-6199297 | None:intergenic | 40.0% | |
| ATTGCATAATTTCGCAGACC+AGG | - | chr4.4:6200804-6200823 | None:intergenic | 40.0% | |
| CAAGATATCTGAATGCGTAG+AGG | + | chr4.4:6199778-6199797 | MS.gene030405:intron | 40.0% | |
| CAGATGGGGAAATGAAATCT+GGG | + | chr4.4:6201153-6201172 | MS.gene030405:CDS | 40.0% | |
| GACGTTTGGAAAGTTCGATA+TGG | - | chr4.4:6199139-6199158 | None:intergenic | 40.0% | |
| GCCTCAATTTGAGCTTATAG+AGG | - | chr4.4:6201109-6201128 | None:intergenic | 40.0% | |
| TAGCAGGCACTTTCTTGAAA+GGG | - | chr4.4:6199277-6199296 | None:intergenic | 40.0% | |
| TAGCTAGAAATGTGACATGC+AGG | + | chr4.4:6200922-6200941 | MS.gene030405:intron | 40.0% | |
| TATCTTGCTTCTGCATTTCC+TGG | + | chr4.4:6199701-6199720 | MS.gene030405:CDS | 40.0% | |
| TATGCAATTACAGGTAGACG+TGG | + | chr4.4:6200816-6200835 | MS.gene030405:intron | 40.0% | |
| TCTAGTGGTAGACCCAATAA+TGG | - | chr4.4:6200655-6200674 | None:intergenic | 40.0% | |
| TGAATGCGTAGAGGTTAAGA+GGG | + | chr4.4:6199787-6199806 | MS.gene030405:intron | 40.0% | |
| TGCTAGTCATTACATACTGC+AGG | + | chr4.4:6199946-6199965 | MS.gene030405:intron | 40.0% | |
| ! | AAAGTGCCTGCTATTGTTGA+TGG | + | chr4.4:6199284-6199303 | MS.gene030405:CDS | 40.0% |
| ! | AACATTTGGCTTAAGGGTGA+CGG | + | chr4.4:6200733-6200752 | MS.gene030405:CDS | 40.0% |
| ! | GTATCAATCTGGTAATGCCA+TGG | + | chr4.4:6200425-6200444 | MS.gene030405:intron | 40.0% |
| !! | AACAAAGAGGGTTGTTTTCG+TGG | - | chr4.4:6200158-6200177 | None:intergenic | 40.0% |
| !! | AATCGATTCCGTTGACTCTA+TGG | - | chr4.4:6199106-6199125 | None:intergenic | 40.0% |
| !! | AGAAGATAAGTGCTGACGTT+TGG | - | chr4.4:6199153-6199172 | None:intergenic | 40.0% |
| !!! | CTACTTGTTTTTGCTCTAGC+CGG | + | chr4.4:6200604-6200623 | MS.gene030405:intron | 40.0% |
| !!! | TACTTGTTTTTGCTCTAGCC+GGG | + | chr4.4:6200605-6200624 | MS.gene030405:intron | 40.0% |
| ACTGCTGAACTTTCTTGTGC+GGG | - | chr4.4:6201031-6201050 | None:intergenic | 45.0% | |
| AGAATGGGTGAGTGAAGACA+CGG | + | chr4.4:6200529-6200548 | MS.gene030405:intron | 45.0% | |
| CACTGCTGAACTTTCTTGTG+CGG | - | chr4.4:6201032-6201051 | None:intergenic | 45.0% | |
| CTGAATGCGTAGAGGTTAAG+AGG | + | chr4.4:6199786-6199805 | MS.gene030405:intron | 45.0% | |
| GAAGGTTCAAGCTATTCGAG+AGG | + | chr4.4:6199306-6199325 | MS.gene030405:CDS | 45.0% | |
| GCAATCTAGTCAGACAGATG+GGG | + | chr4.4:6201139-6201158 | MS.gene030405:CDS | 45.0% | |
| GTAGACTAGGTCATGGAAAG+AGG | - | chr4.4:6200588-6200607 | None:intergenic | 45.0% | |
| ! | ACATTTGGCTTAAGGGTGAC+GGG | + | chr4.4:6200734-6200753 | MS.gene030405:CDS | 45.0% |
| ! | CGTAGAGGTTAAGAGGGTAT+TGG | + | chr4.4:6199793-6199812 | MS.gene030405:intron | 45.0% |
| ! | GAATTCACGCGGTGTTAGAT+TGG | + | chr4.4:6200094-6200113 | MS.gene030405:CDS | 45.0% |
| ! | TGCCTGCTATTGTTGATGGA+AGG | + | chr4.4:6199288-6199307 | MS.gene030405:CDS | 45.0% |
| !! | TGTCTTGCCTGTTTCTGAAC+TGG | + | chr4.4:6200241-6200260 | MS.gene030405:intron | 45.0% |
| !!! | TTTTATAATAATGATTTTAA+CGG | - | chr4.4:6199434-6199453 | None:intergenic | 5.0% |
| AACGTCAGCTGGGTACCTAA+TGG | - | chr4.4:6200061-6200080 | None:intergenic | 50.0% | |
| AAGAATCGCACGAGATGGCT+GGG | - | chr4.4:6198989-6199008 | None:intergenic | 50.0% | |
| ATTACAGGTAGACGTGGCAC+TGG | + | chr4.4:6200822-6200841 | MS.gene030405:intron | 50.0% | |
| CAAAAACGCACCCTCGTTAG+TGG | + | chr4.4:6199865-6199884 | MS.gene030405:intron | 50.0% | |
| CAGGAGAGCTAGAATTCACG+CGG | + | chr4.4:6200083-6200102 | MS.gene030405:CDS | 50.0% | |
| CATCATGCCATGACTCGTTG+AGG | + | chr4.4:6200870-6200889 | MS.gene030405:intron | 50.0% | |
| CGCACAAGAAAGTTCAGCAG+TGG | + | chr4.4:6201030-6201049 | MS.gene030405:CDS | 50.0% | |
| TAAGAATCGCACGAGATGGC+TGG | - | chr4.4:6198990-6199009 | None:intergenic | 50.0% | |
| TACCAATGGTGTGCAACTCC+AGG | - | chr4.4:6199722-6199741 | None:intergenic | 50.0% | |
| TGAGATCCGCTATGGAAGGT+CGG | - | chr4.4:6200780-6200799 | None:intergenic | 50.0% | |
| TTACAGGTAGACGTGGCACT+GGG | + | chr4.4:6200823-6200842 | MS.gene030405:intron | 50.0% | |
| TTCCTGGAGTTGCACACCAT+TGG | + | chr4.4:6199717-6199736 | MS.gene030405:CDS | 50.0% | |
| AGGCTGAGATCCGCTATGGA+AGG | - | chr4.4:6200784-6200803 | None:intergenic | 55.0% | |
| CACGAGATGGCTGGGACATA+CGG | - | chr4.4:6198981-6199000 | None:intergenic | 55.0% | |
| CATCACCTGAATTTGCGCCG+TGG | + | chr4.4:6200117-6200136 | MS.gene030405:CDS | 55.0% | |
| CTCTCCTGGAAACGTCAGCT+GGG | - | chr4.4:6200071-6200090 | None:intergenic | 55.0% | |
| GACGGGCAATACTTGCTTGG+TGG | + | chr4.4:6200751-6200770 | MS.gene030405:CDS | 55.0% | |
| GCAGCTGCTTGCTTGTCTAG+TGG | - | chr4.4:6200670-6200689 | None:intergenic | 55.0% | |
| GGAATAACGCACCTGCTCCA+CGG | - | chr4.4:6200137-6200156 | None:intergenic | 55.0% | |
| TACAGGTAGACGTGGCACTG+GGG | + | chr4.4:6200824-6200843 | MS.gene030405:intron | 55.0% | |
| TGGCTTCCGACCTTCCATAG+CGG | + | chr4.4:6200771-6200790 | MS.gene030405:CDS | 55.0% | |
| !! | CGCGTGAATTCTAGCTCTCC+TGG | - | chr4.4:6200085-6200104 | None:intergenic | 55.0% |
| !! | GGTGACGGGCAATACTTGCT+TGG | + | chr4.4:6200748-6200767 | MS.gene030405:CDS | 55.0% |
| !! | TTCCATAGCGGATCTCAGCC+TGG | + | chr4.4:6200783-6200802 | MS.gene030405:CDS | 55.0% |
| CTGAATTTGCGCCGTGGAGC+AGG | + | chr4.4:6200123-6200142 | MS.gene030405:CDS | 60.0% | |
| CTGCTCCACGGCGCAAATTC+AGG | - | chr4.4:6200125-6200144 | None:intergenic | 60.0% | |
| GACCAGGCTGAGATCCGCTA+TGG | - | chr4.4:6200788-6200807 | None:intergenic | 60.0% | |
| GCTCTCCTGGAAACGTCAGC+TGG | - | chr4.4:6200072-6200091 | None:intergenic | 60.0% | |
| GGTACCCAGCTGACGTTTCC+AGG | + | chr4.4:6200064-6200083 | MS.gene030405:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 6198955 | 6201205 | 6198955 | ID=MS.gene030405 |
| chr4.4 | mRNA | 6198955 | 6201205 | 6198955 | ID=MS.gene030405.t1;Parent=MS.gene030405 |
| chr4.4 | exon | 6198955 | 6199019 | 6198955 | ID=MS.gene030405.t1.exon1;Parent=MS.gene030405.t1 |
| chr4.4 | CDS | 6198955 | 6199019 | 6198955 | ID=cds.MS.gene030405.t1;Parent=MS.gene030405.t1 |
| chr4.4 | exon | 6199109 | 6199182 | 6199109 | ID=MS.gene030405.t1.exon2;Parent=MS.gene030405.t1 |
| chr4.4 | CDS | 6199109 | 6199182 | 6199109 | ID=cds.MS.gene030405.t1;Parent=MS.gene030405.t1 |
| chr4.4 | exon | 6199267 | 6199327 | 6199267 | ID=MS.gene030405.t1.exon3;Parent=MS.gene030405.t1 |
| chr4.4 | CDS | 6199267 | 6199327 | 6199267 | ID=cds.MS.gene030405.t1;Parent=MS.gene030405.t1 |
| chr4.4 | exon | 6199685 | 6199738 | 6199685 | ID=MS.gene030405.t1.exon4;Parent=MS.gene030405.t1 |
| chr4.4 | CDS | 6199685 | 6199738 | 6199685 | ID=cds.MS.gene030405.t1;Parent=MS.gene030405.t1 |
| chr4.4 | exon | 6200065 | 6200144 | 6200065 | ID=MS.gene030405.t1.exon5;Parent=MS.gene030405.t1 |
| chr4.4 | CDS | 6200065 | 6200144 | 6200065 | ID=cds.MS.gene030405.t1;Parent=MS.gene030405.t1 |
| chr4.4 | exon | 6200623 | 6200828 | 6200623 | ID=MS.gene030405.t1.exon6;Parent=MS.gene030405.t1 |
| chr4.4 | CDS | 6200623 | 6200828 | 6200623 | ID=cds.MS.gene030405.t1;Parent=MS.gene030405.t1 |
| chr4.4 | exon | 6200993 | 6201205 | 6200993 | ID=MS.gene030405.t1.exon7;Parent=MS.gene030405.t1 |
| chr4.4 | CDS | 6200993 | 6201205 | 6200993 | ID=cds.MS.gene030405.t1;Parent=MS.gene030405.t1 |
| Gene Sequence |
| Protein sequence |
