Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83384.t1 | XP_013459656.1 | 99.5 | 192 | 1 | 0 | 1 | 192 | 24 | 215 | 5.40E-108 | 400.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83384.t1 | O80852 | 58.9 | 190 | 78 | 0 | 2 | 191 | 25 | 214 | 2.7e-68 | 259.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83384.t1 | A0A072UVM9 | 99.5 | 192 | 1 | 0 | 1 | 192 | 24 | 215 | 3.9e-108 | 400.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83384.t1 | MTR_3g450930 | 99.479 | 192 | 1 | 0 | 1 | 192 | 24 | 215 | 7.71e-142 | 394 |
| MS.gene83384.t1 | MTR_3g450790 | 77.083 | 192 | 44 | 0 | 1 | 192 | 24 | 215 | 4.76e-113 | 321 |
| MS.gene83384.t1 | MTR_5g090920 | 70.103 | 194 | 55 | 2 | 1 | 192 | 24 | 216 | 5.07e-98 | 283 |
| MS.gene83384.t1 | MTR_5g090910 | 69.271 | 192 | 58 | 1 | 2 | 192 | 25 | 216 | 3.87e-96 | 278 |
| MS.gene83384.t1 | MTR_3g064700 | 54.497 | 189 | 86 | 0 | 1 | 189 | 25 | 213 | 4.85e-76 | 227 |
| MS.gene83384.t1 | MTR_5g090910 | 68.421 | 152 | 47 | 1 | 42 | 192 | 8 | 159 | 1.44e-73 | 219 |
| MS.gene83384.t1 | MTR_1g088850 | 46.774 | 186 | 97 | 2 | 1 | 185 | 25 | 209 | 3.62e-57 | 179 |
| MS.gene83384.t1 | MTR_1g026140 | 43.367 | 196 | 106 | 2 | 1 | 191 | 27 | 222 | 2.78e-54 | 172 |
| MS.gene83384.t1 | MTR_1g088840 | 44.086 | 186 | 103 | 1 | 2 | 187 | 27 | 211 | 1.04e-52 | 168 |
| MS.gene83384.t1 | MTR_1g088825 | 44.086 | 186 | 103 | 1 | 2 | 187 | 27 | 211 | 1.04e-52 | 168 |
| MS.gene83384.t1 | MTR_1g088845 | 43.316 | 187 | 105 | 1 | 1 | 187 | 26 | 211 | 4.62e-50 | 161 |
| MS.gene83384.t1 | MTR_1g088840 | 45.122 | 164 | 89 | 1 | 24 | 187 | 2 | 164 | 1.70e-47 | 153 |
| MS.gene83384.t1 | MTR_1g088840 | 48.673 | 113 | 57 | 1 | 75 | 187 | 4 | 115 | 6.12e-32 | 112 |
| MS.gene83384.t1 | MTR_1g492670 | 53.030 | 66 | 30 | 1 | 122 | 187 | 2 | 66 | 6.63e-17 | 72.0 |
| MS.gene83384.t1 | MTR_8g098420 | 31.507 | 146 | 97 | 2 | 2 | 144 | 26 | 171 | 2.00e-15 | 71.2 |
| MS.gene83384.t1 | MTR_8g098420 | 31.507 | 146 | 97 | 2 | 2 | 144 | 26 | 171 | 4.86e-15 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83384.t1 | AT2G30860 | 58.947 | 190 | 78 | 0 | 2 | 191 | 25 | 214 | 2.51e-88 | 258 |
| MS.gene83384.t1 | AT2G30870 | 59.686 | 191 | 77 | 0 | 2 | 192 | 25 | 215 | 7.17e-88 | 257 |
| MS.gene83384.t1 | AT3G03190 | 51.579 | 190 | 92 | 0 | 1 | 190 | 25 | 214 | 4.15e-66 | 202 |
| MS.gene83384.t1 | AT5G17220 | 50.000 | 186 | 93 | 0 | 2 | 187 | 26 | 211 | 2.59e-63 | 195 |
| MS.gene83384.t1 | AT3G62760 | 47.027 | 185 | 96 | 2 | 1 | 184 | 25 | 208 | 6.52e-58 | 181 |
| MS.gene83384.t1 | AT2G30860 | 57.364 | 129 | 55 | 0 | 2 | 130 | 25 | 153 | 7.69e-54 | 169 |
| MS.gene83384.t1 | AT2G47730 | 43.158 | 190 | 106 | 2 | 1 | 189 | 74 | 262 | 8.00e-50 | 162 |
| MS.gene83384.t1 | AT2G47730 | 43.158 | 190 | 106 | 2 | 1 | 189 | 74 | 262 | 8.00e-50 | 162 |
| MS.gene83384.t1 | AT1G02930 | 42.703 | 185 | 104 | 2 | 1 | 185 | 26 | 208 | 1.92e-49 | 159 |
| MS.gene83384.t1 | AT1G02930 | 42.703 | 185 | 104 | 2 | 1 | 185 | 26 | 208 | 1.92e-49 | 159 |
| MS.gene83384.t1 | AT4G02520 | 43.316 | 187 | 102 | 2 | 1 | 184 | 26 | 211 | 2.09e-48 | 157 |
| MS.gene83384.t1 | AT2G02930 | 44.681 | 188 | 100 | 2 | 1 | 185 | 26 | 212 | 2.83e-48 | 157 |
| MS.gene83384.t1 | AT1G49860 | 43.850 | 187 | 102 | 2 | 2 | 185 | 28 | 214 | 3.49e-48 | 157 |
| MS.gene83384.t1 | AT1G02920 | 42.703 | 185 | 105 | 1 | 1 | 185 | 26 | 209 | 4.18e-48 | 156 |
| MS.gene83384.t1 | AT1G02950 | 41.209 | 182 | 105 | 2 | 2 | 182 | 50 | 230 | 3.36e-45 | 150 |
| MS.gene83384.t1 | AT1G02950 | 41.209 | 182 | 105 | 2 | 2 | 182 | 48 | 228 | 3.55e-45 | 149 |
| MS.gene83384.t1 | AT1G02950 | 41.209 | 182 | 105 | 2 | 2 | 182 | 48 | 228 | 3.55e-45 | 149 |
| MS.gene83384.t1 | AT1G02950 | 41.209 | 182 | 105 | 2 | 2 | 182 | 60 | 240 | 3.71e-45 | 150 |
| MS.gene83384.t1 | AT1G02940 | 39.572 | 187 | 111 | 2 | 2 | 187 | 62 | 247 | 1.49e-41 | 140 |
| MS.gene83384.t1 | AT1G02940 | 39.572 | 187 | 111 | 2 | 2 | 187 | 62 | 247 | 1.49e-41 | 140 |
| MS.gene83384.t1 | AT1G02940 | 39.572 | 187 | 111 | 2 | 2 | 187 | 75 | 260 | 1.89e-41 | 141 |
| MS.gene83384.t1 | AT1G02940 | 39.572 | 187 | 111 | 2 | 2 | 187 | 87 | 272 | 2.50e-41 | 141 |
| MS.gene83384.t1 | AT1G02950 | 39.310 | 145 | 86 | 2 | 39 | 182 | 59 | 202 | 5.70e-32 | 115 |
Find 56 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATAATATTGCAGAATCT+AGG | 0.309658 | 3.3:-37377728 | MS.gene83384:intron |
| CAACTTAGTTATGAATCTTT+TGG | 0.310045 | 3.3:-37377574 | MS.gene83384:CDS |
| TAGTCACCATCTTGAATAAC+AGG | 0.313539 | 3.3:+37378039 | None:intergenic |
| TTCAATGGGAAAAGAGAATA+TGG | 0.323458 | 3.3:-37377376 | MS.gene83384:CDS |
| GACCTTAGCCATCTTCCATT+TGG | 0.332797 | 3.3:-37377414 | MS.gene83384:CDS |
| AGCTGAATACCTTAAGTTGC+AGG | 0.348647 | 3.3:-37379887 | MS.gene83384:intron |
| GATTGGTGGGTTGAAGTTAT+GGG | 0.362347 | 3.3:+37377599 | None:intergenic |
| GATGGTGACTATACTCTCTA+TGG | 0.382544 | 3.3:-37378027 | MS.gene83384:intron |
| AGATTGGTGGGTTGAAGTTA+TGG | 0.389288 | 3.3:+37377598 | None:intergenic |
| TCATTATTTGATGAATTCAA+TGG | 0.409469 | 3.3:-37377391 | MS.gene83384:CDS |
| GAAAATGAACCTGCAACTTA+AGG | 0.411418 | 3.3:+37379878 | None:intergenic |
| TTCATAACTAAGTTGTAGAT+TGG | 0.424724 | 3.3:+37377582 | None:intergenic |
| AATCAAGGGACTGATTTGCT+TGG | 0.451580 | 3.3:-37377672 | MS.gene83384:CDS |
| TTTGAAACGGTACATGTTGA+TGG | 0.459046 | 3.3:-37379931 | MS.gene83384:CDS |
| TTCATCAAATAATGACCAAA+TGG | 0.459253 | 3.3:+37377399 | None:intergenic |
| CATTATTTGATGAATTCAAT+GGG | 0.460909 | 3.3:-37377390 | MS.gene83384:CDS |
| TGGAAAGACAATAGAAGAAA+GGG | 0.463681 | 3.3:-37377652 | MS.gene83384:CDS |
| TTGTTCCATATGCAGCCCTT+TGG | 0.469690 | 3.3:-37378069 | MS.gene83384:intron |
| TAACTAAGTTGTAGATTGGT+GGG | 0.483534 | 3.3:+37377586 | None:intergenic |
| GGTACATGTTGATGGCTTCA+AGG | 0.485623 | 3.3:-37379923 | MS.gene83384:CDS |
| GGTGGGATGATATTAGCAAT+AGG | 0.491315 | 3.3:-37377326 | MS.gene83384:CDS |
| ATATTAGCAATAGGCCATCT+TGG | 0.491886 | 3.3:-37377317 | MS.gene83384:CDS |
| TTACTCCCTGTTATTCAAGA+TGG | 0.495181 | 3.3:-37378045 | MS.gene83384:CDS |
| TTGGAAAGACAATAGAAGAA+AGG | 0.498497 | 3.3:-37377653 | MS.gene83384:CDS |
| CAATAGGCCATCTTGGAAGA+AGG | 0.501103 | 3.3:-37377310 | MS.gene83384:CDS |
| AATAATGACCAAATGGAAGA+TGG | 0.513184 | 3.3:+37377406 | None:intergenic |
| AAAGGATATTGAGTTTGAAA+CGG | 0.517622 | 3.3:-37379944 | None:intergenic |
| TTATAATATTGCAGAATCTA+GGG | 0.521043 | 3.3:-37377727 | MS.gene83384:intron |
| ATAACTAAGTTGTAGATTGG+TGG | 0.523120 | 3.3:+37377585 | None:intergenic |
| GGGAAAAGAGAATATGGTAA+AGG | 0.528479 | 3.3:-37377370 | MS.gene83384:CDS |
| GCTATCAAAGACTAAGTACT+TGG | 0.554970 | 3.3:-37377460 | MS.gene83384:CDS |
| CAAGAGAGTGAAGAAAAGCT+TGG | 0.555057 | 3.3:-37377510 | MS.gene83384:CDS |
| AGAATATGGTAAAGGAGAGG+AGG | 0.556891 | 3.3:-37377362 | MS.gene83384:CDS |
| TCAAAGACTAAGTACTTGGC+TGG | 0.557175 | 3.3:-37377456 | MS.gene83384:CDS |
| AGAAAAGCTTGGAAAAGTGT+TGG | 0.559592 | 3.3:-37377499 | MS.gene83384:CDS |
| TGTAGAACCTTCTTCCAAGA+TGG | 0.563715 | 3.3:+37377303 | None:intergenic |
| AATAGAAGAAAGGGGTCTTG+TGG | 0.568965 | 3.3:-37377643 | MS.gene83384:CDS |
| CACAAACCCTCTAATCACAT+AGG | 0.571439 | 3.3:+37377267 | None:intergenic |
| GTACATGTTGATGGCTTCAA+GGG | 0.572400 | 3.3:-37379922 | MS.gene83384:CDS |
| AAAGGGGTCTTGTGGAGCAA+TGG | 0.573472 | 3.3:-37377635 | MS.gene83384:CDS |
| AGAGGAGGCATGTGAATGCT+TGG | 0.577585 | 3.3:-37377347 | MS.gene83384:CDS |
| TGTTGGACATTTATGAAGAG+AGG | 0.580703 | 3.3:-37377482 | MS.gene83384:CDS |
| GACCAAATGGAAGATGGCTA+AGG | 0.581008 | 3.3:+37377412 | None:intergenic |
| TGGCTTCAAGGGAGAGCACA+AGG | 0.588629 | 3.3:-37379911 | MS.gene83384:CDS |
| ACAAACCCTCTAATCACATA+GGG | 0.591213 | 3.3:+37377268 | None:intergenic |
| AATAACAGGGAGTAATCCAA+AGG | 0.597435 | 3.3:+37378053 | None:intergenic |
| CAGAATCTAGGGCAATCCTA+AGG | 0.599160 | 3.3:-37377716 | MS.gene83384:CDS |
| AAGAGAATATGGTAAAGGAG+AGG | 0.603130 | 3.3:-37377365 | MS.gene83384:CDS |
| GGAGGCATGTGAATGCTTGG+TGG | 0.612663 | 3.3:-37377344 | MS.gene83384:CDS |
| GAGGCATGTGAATGCTTGGT+GGG | 0.616766 | 3.3:-37377343 | MS.gene83384:CDS |
| CAGATGGAAGTCCCACTAGT+GGG | 0.622928 | 3.3:+37377547 | None:intergenic |
| ATAACAGGGAGTAATCCAAA+GGG | 0.626677 | 3.3:+37378054 | None:intergenic |
| TCAGATGGAAGTCCCACTAG+TGG | 0.646315 | 3.3:+37377546 | None:intergenic |
| GAAGATGGCTAAGGTCAGCA+AGG | 0.653599 | 3.3:+37377421 | None:intergenic |
| GGAAAGACAATAGAAGAAAG+GGG | 0.672825 | 3.3:-37377651 | MS.gene83384:CDS |
| AGTCACCATCTTGAATAACA+GGG | 0.712338 | 3.3:+37378040 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAACGATT+GGG | + | chr3.3:37377400-37377419 | None:intergenic | 10.0% |
| !! | TAAAAAAAAAAAAAAACGAT+TGG | + | chr3.3:37377401-37377420 | None:intergenic | 10.0% |
| !! | TGAATGAAATTATAATTTAA+TGG | - | chr3.3:37377795-37377814 | MS.gene83384:intron | 10.0% |
| !! | ACAAAATAGAAAAAAAATTC+AGG | - | chr3.3:37377896-37377915 | MS.gene83384:intron | 15.0% |
| !! | TAACCTTATAACTTATATAA+TGG | + | chr3.3:37377932-37377951 | None:intergenic | 15.0% |
| !!! | TATATATTTTTTTTTTGGTC+TGG | + | chr3.3:37377687-37377706 | None:intergenic | 15.0% |
| !!! | TATTTTCATTATCATTATAG+TGG | - | chr3.3:37378888-37378907 | MS.gene83384:intron | 15.0% |
| !!! | TTTCTATTTTGTACAAAAAA+GGG | + | chr3.3:37377888-37377907 | None:intergenic | 15.0% |
| !!! | TTTTCTATTTTGTACAAAAA+AGG | + | chr3.3:37377889-37377908 | None:intergenic | 15.0% |
| !! | AAATAGATAGACAAAATTGT+TGG | + | chr3.3:37379067-37379086 | None:intergenic | 20.0% |
| !! | AATAGATAGACAAAATTGTT+GGG | + | chr3.3:37379066-37379085 | None:intergenic | 20.0% |
| !! | ACTCAAAAACCAAAAAAATA+TGG | - | chr3.3:37377835-37377854 | MS.gene83384:intron | 20.0% |
| !! | AGAAAAAAAATTCAGGATAA+GGG | - | chr3.3:37377903-37377922 | MS.gene83384:intron | 20.0% |
| !! | AGATCAACTATAATCAATTT+CGG | + | chr3.3:37378312-37378331 | None:intergenic | 20.0% |
| !! | ATTATTTATGCTTAGCTAAA+TGG | + | chr3.3:37379251-37379270 | None:intergenic | 20.0% |
| !! | CATTATTTGATGAATTCAAT+GGG | - | chr3.3:37379831-37379850 | MS.gene83384:intron | 20.0% |
| !! | TAGAAAAAAAATTCAGGATA+AGG | - | chr3.3:37377902-37377921 | MS.gene83384:intron | 20.0% |
| !! | TCACCATTATATAAGTTATA+AGG | - | chr3.3:37377926-37377945 | MS.gene83384:intron | 20.0% |
| !! | TCATTATTTGATGAATTCAA+TGG | - | chr3.3:37379830-37379849 | MS.gene83384:intron | 20.0% |
| !! | TTATAATATTGCAGAATCTA+GGG | - | chr3.3:37379494-37379513 | MS.gene83384:intron | 20.0% |
| !!! | TAAGAAACACCATATTTTTT+TGG | + | chr3.3:37377847-37377866 | None:intergenic | 20.0% |
| !!! | TTATTTTTCTATTGCACTTT+TGG | - | chr3.3:37377373-37377392 | MS.gene83384:CDS | 20.0% |
| ! | ATAAGAAAGAAAAAAACCAC+CGG | + | chr3.3:37378935-37378954 | None:intergenic | 25.0% |
| ! | CCAACTTATATTTGACAAAA+TGG | - | chr3.3:37378491-37378510 | MS.gene83384:intron | 25.0% |
| ! | CTATCATTACGTATAAAACA+GGG | + | chr3.3:37378436-37378455 | None:intergenic | 25.0% |
| ! | CTTATAATATTGCAGAATCT+AGG | - | chr3.3:37379493-37379512 | MS.gene83384:intron | 25.0% |
| ! | CTTATATTTGACAAAATGGA+AGG | - | chr3.3:37378495-37378514 | MS.gene83384:intron | 25.0% |
| ! | TAATTCAATCTACCATATGT+TGG | - | chr3.3:37377419-37377438 | MS.gene83384:CDS | 25.0% |
| ! | TTCATAACTAAGTTGTAGAT+TGG | + | chr3.3:37379642-37379661 | None:intergenic | 25.0% |
| ! | TTCATCAAATAATGACCAAA+TGG | + | chr3.3:37379825-37379844 | None:intergenic | 25.0% |
| !! | AATGATAGCCAAATTTTTGT+GGG | - | chr3.3:37378448-37378467 | MS.gene83384:intron | 25.0% |
| !! | CAACTTAGTTATGAATCTTT+TGG | - | chr3.3:37379647-37379666 | MS.gene83384:intron | 25.0% |
| !! | CCATTTTGTCAAATATAAGT+TGG | + | chr3.3:37378494-37378513 | None:intergenic | 25.0% |
| !! | CTGAAAAGTACAAAAATCAA+GGG | - | chr3.3:37379535-37379554 | MS.gene83384:intron | 25.0% |
| !! | TAATGATAGCCAAATTTTTG+TGG | - | chr3.3:37378447-37378466 | MS.gene83384:intron | 25.0% |
| !! | TTTTATAACATTAGGGAATC+TGG | - | chr3.3:37378404-37378423 | MS.gene83384:intron | 25.0% |
| !!! | ACATGTTTGTTTTATGGATT+TGG | - | chr3.3:37378223-37378242 | MS.gene83384:intron | 25.0% |
| !!! | CTCAACCATTGATTTTAAAT+CGG | + | chr3.3:37378358-37378377 | None:intergenic | 25.0% |
| !!! | TTACACATTTAGTGTTTTGA+TGG | + | chr3.3:37377734-37377753 | None:intergenic | 25.0% |
| AACGTATCTCTCAATTTGTA+AGG | + | chr3.3:37378836-37378855 | None:intergenic | 30.0% | |
| AATAATGACCAAATGGAAGA+TGG | + | chr3.3:37379818-37379837 | None:intergenic | 30.0% | |
| AATACAACAATTTCATCCCT+AGG | + | chr3.3:37378872-37378891 | None:intergenic | 30.0% | |
| ACAAGCATTAGACTTATATG+TGG | + | chr3.3:37379136-37379155 | None:intergenic | 30.0% | |
| AGTTAGGATGAATATATGTG+TGG | + | chr3.3:37378269-37378288 | None:intergenic | 30.0% | |
| ATAAATCTACTCATGAATGC+AGG | + | chr3.3:37379302-37379321 | None:intergenic | 30.0% | |
| ATAACTAAGTTGTAGATTGG+TGG | + | chr3.3:37379639-37379658 | None:intergenic | 30.0% | |
| GCTATCATTACGTATAAAAC+AGG | + | chr3.3:37378437-37378456 | None:intergenic | 30.0% | |
| TAACTAAGTTGTAGATTGGT+GGG | + | chr3.3:37379638-37379657 | None:intergenic | 30.0% | |
| TAAGGAACACTCTTACAAAT+TGG | + | chr3.3:37378818-37378837 | None:intergenic | 30.0% | |
| TATGTTGGATTGAATTCGAA+TGG | - | chr3.3:37377434-37377453 | MS.gene83384:CDS | 30.0% | |
| TGGAAAGACAATAGAAGAAA+GGG | - | chr3.3:37379569-37379588 | MS.gene83384:intron | 30.0% | |
| TGTGGATGATCTATATGAAT+TGG | + | chr3.3:37379118-37379137 | None:intergenic | 30.0% | |
| TTCAATGGGAAAAGAGAATA+TGG | - | chr3.3:37379845-37379864 | MS.gene83384:intron | 30.0% | |
| TTCAGACTATCTTGATCAAA+CGG | - | chr3.3:37379397-37379416 | MS.gene83384:intron | 30.0% | |
| TTCGAATTCAATCCAACATA+TGG | + | chr3.3:37377434-37377453 | None:intergenic | 30.0% | |
| TTGGAAAGACAATAGAAGAA+AGG | - | chr3.3:37379568-37379587 | MS.gene83384:intron | 30.0% | |
| TTTCATTCAATCCATTGAAC+CGG | + | chr3.3:37377784-37377803 | None:intergenic | 30.0% | |
| ! | ATGATAGCCAAATTTTTGTG+GGG | - | chr3.3:37378449-37378468 | MS.gene83384:intron | 30.0% |
| ! | CCTAATGTTATAAAAGCACA+CGG | + | chr3.3:37378399-37378418 | None:intergenic | 30.0% |
| ! | CGTGTGCTTTTATAACATTA+GGG | - | chr3.3:37378397-37378416 | MS.gene83384:intron | 30.0% |
| ! | GAATATCAAACTCGAAGTTT+TGG | + | chr3.3:37379380-37379399 | None:intergenic | 30.0% |
| ! | GCTGAAAAGTACAAAAATCA+AGG | - | chr3.3:37379534-37379553 | MS.gene83384:intron | 30.0% |
| ! | TGAACAACTTTTTGATCAGA+TGG | + | chr3.3:37379693-37379712 | None:intergenic | 30.0% |
| ! | TGCAGTGCAATTTTACATTT+CGG | + | chr3.3:37378179-37378198 | None:intergenic | 30.0% |
| ! | TTTTATGTACATTATGCTGC+TGG | - | chr3.3:37379271-37379290 | MS.gene83384:intron | 30.0% |
| !! | AATTACACAGAATTTTAGCG+TGG | + | chr3.3:37378972-37378991 | None:intergenic | 30.0% |
| !!! | ACCATTGATTTTAAATCGGA+CGG | + | chr3.3:37378354-37378373 | None:intergenic | 30.0% |
| !!! | GCATCTGGTTTTTTACAATT+AGG | - | chr3.3:37378196-37378215 | MS.gene83384:intron | 30.0% |
| !!! | GGCAATACATGTTTGTTTTA+TGG | - | chr3.3:37378217-37378236 | MS.gene83384:intron | 30.0% |
| !!! | TAGTGTCTATTTTGAGTTCA+CGG | - | chr3.3:37379015-37379034 | MS.gene83384:intron | 30.0% |
| !!! | TTTTTGTTGTTCTTCTCTTG+TGG | + | chr3.3:37378736-37378755 | None:intergenic | 30.0% |
| AACTCAAAATAGACACTAGC+GGG | + | chr3.3:37379013-37379032 | None:intergenic | 35.0% | |
| AAGAGAATATGGTAAAGGAG+AGG | - | chr3.3:37379856-37379875 | MS.gene83384:intron | 35.0% | |
| AATAACAGGGAGTAATCCAA+AGG | + | chr3.3:37379171-37379190 | None:intergenic | 35.0% | |
| ACCAACTAAGCTACACTTAT+GGG | + | chr3.3:37377572-37377591 | None:intergenic | 35.0% | |
| AGTCACCATCTTGAATAACA+GGG | + | chr3.3:37379184-37379203 | None:intergenic | 35.0% | |
| ATAACAGGGAGTAATCCAAA+GGG | + | chr3.3:37379170-37379189 | None:intergenic | 35.0% | |
| ATATTAGCAATAGGCCATCT+TGG | - | chr3.3:37379904-37379923 | MS.gene83384:CDS | 35.0% | |
| ATGACAAGTATCAAGGTGTA+TGG | - | chr3.3:37378527-37378546 | MS.gene83384:intron | 35.0% | |
| ATGCTGACAACGTTAATTCA+TGG | - | chr3.3:37379428-37379447 | MS.gene83384:intron | 35.0% | |
| ATGTAAAATTGCACTGCATC+TGG | - | chr3.3:37378181-37378200 | MS.gene83384:intron | 35.0% | |
| CACAGTTCATGTTTGATCTT+TGG | - | chr3.3:37378086-37378105 | MS.gene83384:intron | 35.0% | |
| CATTACGTATAAAACAGGGA+TGG | + | chr3.3:37378432-37378451 | None:intergenic | 35.0% | |
| GAAAATGAACCTGCAACTTA+AGG | + | chr3.3:37377346-37377365 | None:intergenic | 35.0% | |
| GAACTCAAAATAGACACTAG+CGG | + | chr3.3:37379014-37379033 | None:intergenic | 35.0% | |
| GCTATCAAAGACTAAGTACT+TGG | - | chr3.3:37379761-37379780 | MS.gene83384:intron | 35.0% | |
| GGAAAGACAATAGAAGAAAG+GGG | - | chr3.3:37379570-37379589 | MS.gene83384:intron | 35.0% | |
| GGGAAAAGAGAATATGGTAA+AGG | - | chr3.3:37379851-37379870 | MS.gene83384:intron | 35.0% | |
| TACAGTATAGAAGCAAGTGA+AGG | + | chr3.3:37379226-37379245 | None:intergenic | 35.0% | |
| TACCAACTAAGCTACACTTA+TGG | + | chr3.3:37377573-37377592 | None:intergenic | 35.0% | |
| TAGTCACCATCTTGAATAAC+AGG | + | chr3.3:37379185-37379204 | None:intergenic | 35.0% | |
| TGTATGAGTAACACATGTTG+TGG | - | chr3.3:37378566-37378585 | MS.gene83384:intron | 35.0% | |
| TGTTGGACATTTATGAAGAG+AGG | - | chr3.3:37379739-37379758 | MS.gene83384:intron | 35.0% | |
| TTACTCCCTGTTATTCAAGA+TGG | - | chr3.3:37379176-37379195 | MS.gene83384:intron | 35.0% | |
| ! | ACCGTCCGATTTAAAATCAA+TGG | - | chr3.3:37378350-37378369 | MS.gene83384:intron | 35.0% |
| ! | ACTTTTCAGCATAGTACCTT+AGG | + | chr3.3:37379524-37379543 | None:intergenic | 35.0% |
| ! | AGAAAAGCTTGGAAAAGTGT+TGG | - | chr3.3:37379722-37379741 | MS.gene83384:intron | 35.0% |
| ! | CCGTGTGCTTTTATAACATT+AGG | - | chr3.3:37378396-37378415 | MS.gene83384:intron | 35.0% |
| ! | TTTGAAACGGTACATGTTGA+TGG | - | chr3.3:37377290-37377309 | MS.gene83384:CDS | 35.0% |
| !!! | TATTTTGAGTTCACGGATGA+GGG | - | chr3.3:37379022-37379041 | MS.gene83384:intron | 35.0% |
| !!! | TTTAGTGTTTTGATGGTCGT+TGG | + | chr3.3:37377727-37377746 | None:intergenic | 35.0% |
| AATAGAAGAAAGGGGTCTTG+TGG | - | chr3.3:37379578-37379597 | MS.gene83384:intron | 40.0% | |
| ACAACAATTTCATCCCTAGG+TGG | + | chr3.3:37378869-37378888 | None:intergenic | 40.0% | |
| ACACATTATGTGTGGAGAAG+TGG | + | chr3.3:37377645-37377664 | None:intergenic | 40.0% | |
| AGAATATGGTAAAGGAGAGG+AGG | - | chr3.3:37379859-37379878 | MS.gene83384:intron | 40.0% | |
| CAAGAGAGTGAAGAAAAGCT+TGG | - | chr3.3:37379711-37379730 | MS.gene83384:intron | 40.0% | |
| CGACTTTATATCGGACAGTT+AGG | + | chr3.3:37378285-37378304 | None:intergenic | 40.0% | |
| CGATAATTGCCACCTTTATG+CGG | - | chr3.3:37377465-37377484 | MS.gene83384:CDS | 40.0% | |
| CTAGACTCACACATTATGTG+TGG | + | chr3.3:37377653-37377672 | None:intergenic | 40.0% | |
| GATAATTGCCACCTTTATGC+GGG | - | chr3.3:37377466-37377485 | MS.gene83384:CDS | 40.0% | |
| GATGGTGACTATACTCTCTA+TGG | - | chr3.3:37379194-37379213 | MS.gene83384:intron | 40.0% | |
| GCATGTGATGACAAGTATCA+AGG | - | chr3.3:37378520-37378539 | MS.gene83384:intron | 40.0% | |
| GGTGGGATGATATTAGCAAT+AGG | - | chr3.3:37379895-37379914 | MS.gene83384:CDS | 40.0% | |
| GTCCTTTATTGAAAACCAGG+TGG | + | chr3.3:37378157-37378176 | None:intergenic | 40.0% | |
| TACATGTAATTTGAGCCACC+TGG | - | chr3.3:37378139-37378158 | MS.gene83384:intron | 40.0% | |
| TACCAGGGATATTATGTGCA+GGG | - | chr3.3:37377595-37377614 | MS.gene83384:CDS | 40.0% | |
| TATATATGCCACCCGCATAA+AGG | + | chr3.3:37377480-37377499 | None:intergenic | 40.0% | |
| TCAAAGACTAAGTACTTGGC+TGG | - | chr3.3:37379765-37379784 | MS.gene83384:intron | 40.0% | |
| TCCCATAAGTGTAGCTTAGT+TGG | - | chr3.3:37377568-37377587 | MS.gene83384:CDS | 40.0% | |
| TCGGTCCTTTATTGAAAACC+AGG | + | chr3.3:37378160-37378179 | None:intergenic | 40.0% | |
| TGTAGAACCTTCTTCCAAGA+TGG | + | chr3.3:37379921-37379940 | None:intergenic | 40.0% | |
| TTCACGGATGAGGGAAATTA+TGG | - | chr3.3:37379031-37379050 | MS.gene83384:intron | 40.0% | |
| TTCGGACGACGACTTTATAT+CGG | + | chr3.3:37378294-37378313 | None:intergenic | 40.0% | |
| ! | AGCTGAATACCTTAAGTTGC+AGG | - | chr3.3:37377334-37377353 | MS.gene83384:CDS | 40.0% |
| ! | TCAAATATAAGTTGGCCACG+TGG | + | chr3.3:37378486-37378505 | None:intergenic | 40.0% |
| !! | AATCAAGGGACTGATTTGCT+TGG | - | chr3.3:37379549-37379568 | MS.gene83384:intron | 40.0% |
| !! | AGATTGGTGGGTTGAAGTTA+TGG | + | chr3.3:37379626-37379645 | None:intergenic | 40.0% |
| !! | AGCCACCTGGTTTTCAATAA+AGG | - | chr3.3:37378152-37378171 | MS.gene83384:intron | 40.0% |
| !! | GATTGGTGGGTTGAAGTTAT+GGG | + | chr3.3:37379625-37379644 | None:intergenic | 40.0% |
| !! | GTACATGTTGATGGCTTCAA+GGG | - | chr3.3:37377299-37377318 | MS.gene83384:CDS | 40.0% |
| !! | TGATCCAAATTGACTTGAGC+CGG | - | chr3.3:37377762-37377781 | MS.gene83384:intron | 40.0% |
| !! | TGTGTCGATTCTCACAAATG+CGG | - | chr3.3:37377952-37377971 | MS.gene83384:intron | 40.0% |
| !! | TTTTTGGTCTGGTAGCTTAG+TGG | + | chr3.3:37377676-37377695 | None:intergenic | 40.0% |
| !!! | CACTTGGTGTTTTGCATGAA+AGG | - | chr3.3:37378637-37378656 | MS.gene83384:intron | 40.0% |
| !!! | CTATTTTGAGTTCACGGATG+AGG | - | chr3.3:37379021-37379040 | MS.gene83384:intron | 40.0% |
| !!! | CTTTTGGTTTACCCACTAGT+GGG | - | chr3.3:37379663-37379682 | MS.gene83384:intron | 40.0% |
| !!! | TCTTTTGGTTTACCCACTAG+TGG | - | chr3.3:37379662-37379681 | MS.gene83384:intron | 40.0% |
| ACCAGGGATATTATGTGCAG+GGG | - | chr3.3:37377596-37377615 | MS.gene83384:CDS | 45.0% | |
| ACGGATGAGGGAAATTATGG+AGG | - | chr3.3:37379034-37379053 | MS.gene83384:intron | 45.0% | |
| CAAGGTGTATGGTGTACAGT+TGG | - | chr3.3:37378538-37378557 | MS.gene83384:intron | 45.0% | |
| CAATAGGCCATCTTGGAAGA+AGG | - | chr3.3:37379911-37379930 | MS.gene83384:CDS | 45.0% | |
| CATGCATTGCAAGAGACACA+CGG | - | chr3.3:37378591-37378610 | MS.gene83384:intron | 45.0% | |
| CATTCATTGCAAGGGACACT+TGG | - | chr3.3:37378621-37378640 | MS.gene83384:intron | 45.0% | |
| CTACCAGGGATATTATGTGC+AGG | - | chr3.3:37377594-37377613 | MS.gene83384:CDS | 45.0% | |
| GACCAAATGGAAGATGGCTA+AGG | + | chr3.3:37379812-37379831 | None:intergenic | 45.0% | |
| GACCTTAGCCATCTTCCATT+TGG | - | chr3.3:37379807-37379826 | MS.gene83384:intron | 45.0% | |
| GGATGGACCCCACAAAAATT+TGG | + | chr3.3:37378459-37378478 | None:intergenic | 45.0% | |
| GTAATCCAAAGGGCTGCATA+TGG | + | chr3.3:37379160-37379179 | None:intergenic | 45.0% | |
| GTTGTAGTGAGATCCACCTA+GGG | - | chr3.3:37378853-37378872 | MS.gene83384:intron | 45.0% | |
| TTGTTCCATATGCAGCCCTT+TGG | - | chr3.3:37379152-37379171 | MS.gene83384:intron | 45.0% | |
| ! | CAGAATCTAGGGCAATCCTA+AGG | - | chr3.3:37379505-37379524 | MS.gene83384:intron | 45.0% |
| ! | GTTTAAGACGCTCAAGAGTC+CGG | - | chr3.3:37378913-37378932 | MS.gene83384:intron | 45.0% |
| ! | TGAACCGGCTCAAGTCAATT+TGG | + | chr3.3:37377769-37377788 | None:intergenic | 45.0% |
| !! | AGCTTAGTTGGTAGCTACCA+GGG | - | chr3.3:37377580-37377599 | MS.gene83384:CDS | 45.0% |
| !! | ATTGACTTGAGCCGGTTCAA+TGG | - | chr3.3:37377770-37377789 | MS.gene83384:intron | 45.0% |
| !! | GGTACATGTTGATGGCTTCA+AGG | - | chr3.3:37377298-37377317 | MS.gene83384:CDS | 45.0% |
| !! | TAGCTTAGTTGGTAGCTACC+AGG | - | chr3.3:37377579-37377598 | MS.gene83384:CDS | 45.0% |
| !!! | AATGATATATATTTTAAATT+TGG | + | chr3.3:37377546-37377565 | None:intergenic | 5.0% |
| !!! | TGATATATATATTTTTTTTT+TGG | + | chr3.3:37377692-37377711 | None:intergenic | 5.0% |
| AATTGCCACCTTTATGCGGG+TGG | - | chr3.3:37377469-37377488 | MS.gene83384:CDS | 50.0% | |
| ACCCCTGCACATAATATCCC+TGG | + | chr3.3:37377600-37377619 | None:intergenic | 50.0% | |
| ATATGCCACCCGCATAAAGG+TGG | + | chr3.3:37377477-37377496 | None:intergenic | 50.0% | |
| ATTGCAAGAGACACACGGTG+CGG | - | chr3.3:37378596-37378615 | MS.gene83384:intron | 50.0% | |
| CAGATGGAAGTCCCACTAGT+GGG | + | chr3.3:37379677-37379696 | None:intergenic | 50.0% | |
| CGTTGTAGTGAGATCCACCT+AGG | - | chr3.3:37378852-37378871 | MS.gene83384:intron | 50.0% | |
| GAAGATGGCTAAGGTCAGCA+AGG | + | chr3.3:37379803-37379822 | None:intergenic | 50.0% | |
| GAGGCATGTGAATGCTTGGT+GGG | - | chr3.3:37379878-37379897 | MS.gene83384:intron | 50.0% | |
| GATATTATGTGCAGGGGTCG+GGG | - | chr3.3:37377602-37377621 | MS.gene83384:CDS | 50.0% | |
| GGATATTATGTGCAGGGGTC+GGG | - | chr3.3:37377601-37377620 | MS.gene83384:CDS | 50.0% | |
| GGGATATTATGTGCAGGGGT+CGG | - | chr3.3:37377600-37377619 | MS.gene83384:CDS | 50.0% | |
| GTGCGGTGCATTCATTGCAA+GGG | - | chr3.3:37378613-37378632 | MS.gene83384:intron | 50.0% | |
| GTGTGGAGAAGTGGAGAATC+CGG | + | chr3.3:37377636-37377655 | None:intergenic | 50.0% | |
| TCAGATGGAAGTCCCACTAG+TGG | + | chr3.3:37379678-37379697 | None:intergenic | 50.0% | |
| TGTGGAGAAGTGGAGAATCC+GGG | + | chr3.3:37377635-37377654 | None:intergenic | 50.0% | |
| ! | AAAGGGGTCTTGTGGAGCAA+TGG | - | chr3.3:37379586-37379605 | MS.gene83384:intron | 50.0% |
| ! | AGAGGAGGCATGTGAATGCT+TGG | - | chr3.3:37379874-37379893 | MS.gene83384:intron | 50.0% |
| ! | ATAAGTTGGCCACGTGGCAT+TGG | + | chr3.3:37378480-37378499 | None:intergenic | 50.0% |
| GGTGCGGTGCATTCATTGCA+AGG | - | chr3.3:37378612-37378631 | MS.gene83384:intron | 55.0% | |
| GTGGAGAAGTGGAGAATCCG+GGG | + | chr3.3:37377634-37377653 | None:intergenic | 55.0% | |
| TAAGACGCTCAAGAGTCCGG+TGG | - | chr3.3:37378916-37378935 | MS.gene83384:intron | 55.0% | |
| ! | GGAGGCATGTGAATGCTTGG+TGG | - | chr3.3:37379877-37379896 | MS.gene83384:intron | 55.0% |
| ! | TGGCTTCAAGGGAGAGCACA+AGG | - | chr3.3:37377310-37377329 | MS.gene83384:CDS | 55.0% |
| ! | GTTGGCCACGTGGCATTGGA+TGG | + | chr3.3:37378476-37378495 | None:intergenic | 60.0% |
| GGGGTCCATCCAATGCCACG+TGG | - | chr3.3:37378468-37378487 | MS.gene83384:intron | 65.0% | |
| AGGGGTCGGGGTTCGAACCC+CGG | - | chr3.3:37377614-37377633 | MS.gene83384:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 37377281 | 37379962 | 37377281 | ID=MS.gene83384 |
| chr3.3 | mRNA | 37377281 | 37379962 | 37377281 | ID=MS.gene83384.t1;Parent=MS.gene83384 |
| chr3.3 | exon | 37379888 | 37379962 | 37379888 | ID=MS.gene83384.t1.exon1;Parent=MS.gene83384.t1 |
| chr3.3 | CDS | 37379888 | 37379962 | 37379888 | ID=cds.MS.gene83384.t1;Parent=MS.gene83384.t1 |
| chr3.3 | exon | 37378028 | 37378076 | 37378028 | ID=MS.gene83384.t1.exon2;Parent=MS.gene83384.t1 |
| chr3.3 | CDS | 37378028 | 37378076 | 37378028 | ID=cds.MS.gene83384.t1;Parent=MS.gene83384.t1 |
| chr3.3 | exon | 37377281 | 37377735 | 37377281 | ID=MS.gene83384.t1.exon3;Parent=MS.gene83384.t1 |
| chr3.3 | CDS | 37377281 | 37377735 | 37377281 | ID=cds.MS.gene83384.t1;Parent=MS.gene83384.t1 |
| Gene Sequence |
| Protein sequence |
