Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017060.t1 | XP_003617376.1 | 91.6 | 215 | 18 | 0 | 1 | 215 | 1 | 215 | 2.40E-112 | 414.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017060.t1 | O80852 | 62.5 | 216 | 78 | 2 | 1 | 215 | 1 | 214 | 3.6e-77 | 289.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017060.t1 | G7K3B0 | 91.6 | 215 | 18 | 0 | 1 | 215 | 1 | 215 | 1.7e-112 | 414.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017060.t1 | MTR_5g090910 | 91.628 | 215 | 18 | 0 | 1 | 215 | 1 | 215 | 8.87e-148 | 410 |
MS.gene017060.t1 | MTR_5g090920 | 88.889 | 216 | 24 | 0 | 1 | 216 | 1 | 216 | 5.32e-144 | 400 |
MS.gene017060.t1 | MTR_3g450790 | 69.124 | 217 | 64 | 2 | 1 | 216 | 1 | 215 | 6.86e-109 | 311 |
MS.gene017060.t1 | MTR_3g450930 | 69.907 | 216 | 62 | 2 | 1 | 215 | 1 | 214 | 2.07e-108 | 310 |
MS.gene017060.t1 | MTR_5g090910 | 89.404 | 151 | 16 | 0 | 65 | 215 | 8 | 158 | 5.04e-99 | 284 |
MS.gene017060.t1 | MTR_3g064700 | 52.778 | 216 | 96 | 4 | 1 | 213 | 1 | 213 | 1.11e-75 | 227 |
MS.gene017060.t1 | MTR_1g026140 | 42.922 | 219 | 118 | 4 | 3 | 215 | 5 | 222 | 1.16e-56 | 179 |
MS.gene017060.t1 | MTR_1g088840 | 42.925 | 212 | 116 | 4 | 2 | 211 | 3 | 211 | 3.09e-56 | 178 |
MS.gene017060.t1 | MTR_1g088825 | 42.925 | 212 | 116 | 4 | 2 | 211 | 3 | 211 | 3.09e-56 | 178 |
MS.gene017060.t1 | MTR_1g088850 | 43.128 | 211 | 116 | 4 | 1 | 209 | 1 | 209 | 8.04e-55 | 174 |
MS.gene017060.t1 | MTR_1g088845 | 43.396 | 212 | 115 | 4 | 2 | 211 | 3 | 211 | 1.19e-53 | 171 |
MS.gene017060.t1 | MTR_1g088840 | 42.771 | 166 | 91 | 3 | 47 | 211 | 2 | 164 | 1.18e-42 | 142 |
MS.gene017060.t1 | MTR_1g088840 | 45.217 | 115 | 59 | 3 | 98 | 211 | 4 | 115 | 2.35e-27 | 101 |
MS.gene017060.t1 | MTR_1g492670 | 48.485 | 66 | 33 | 1 | 146 | 211 | 2 | 66 | 1.72e-15 | 68.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017060.t1 | AT2G30860 | 62.212 | 217 | 79 | 2 | 1 | 216 | 1 | 215 | 1.42e-100 | 290 |
MS.gene017060.t1 | AT2G30870 | 58.525 | 217 | 87 | 2 | 1 | 216 | 1 | 215 | 4.56e-90 | 264 |
MS.gene017060.t1 | AT3G03190 | 48.357 | 213 | 106 | 3 | 1 | 211 | 1 | 211 | 9.15e-68 | 207 |
MS.gene017060.t1 | AT2G30860 | 61.290 | 155 | 57 | 2 | 1 | 154 | 1 | 153 | 1.10e-65 | 200 |
MS.gene017060.t1 | AT5G17220 | 45.755 | 212 | 113 | 2 | 1 | 211 | 1 | 211 | 5.92e-64 | 197 |
MS.gene017060.t1 | AT3G62760 | 45.714 | 210 | 110 | 4 | 1 | 208 | 1 | 208 | 2.17e-59 | 186 |
MS.gene017060.t1 | AT2G47730 | 41.706 | 211 | 119 | 4 | 5 | 213 | 54 | 262 | 4.29e-55 | 176 |
MS.gene017060.t1 | AT2G47730 | 41.706 | 211 | 119 | 4 | 5 | 213 | 54 | 262 | 4.29e-55 | 176 |
MS.gene017060.t1 | AT1G02930 | 41.827 | 208 | 117 | 4 | 3 | 209 | 4 | 208 | 4.14e-51 | 164 |
MS.gene017060.t1 | AT1G02930 | 41.827 | 208 | 117 | 4 | 3 | 209 | 4 | 208 | 4.14e-51 | 164 |
MS.gene017060.t1 | AT2G02930 | 42.180 | 211 | 116 | 4 | 3 | 209 | 4 | 212 | 1.79e-50 | 163 |
MS.gene017060.t1 | AT1G02920 | 42.308 | 208 | 117 | 3 | 3 | 209 | 4 | 209 | 2.88e-50 | 162 |
MS.gene017060.t1 | AT4G02520 | 40.952 | 210 | 118 | 4 | 3 | 208 | 4 | 211 | 5.31e-50 | 162 |
MS.gene017060.t1 | AT1G02950 | 40.686 | 204 | 117 | 4 | 4 | 205 | 26 | 227 | 8.58e-46 | 152 |
MS.gene017060.t1 | AT1G02950 | 40.686 | 204 | 117 | 4 | 4 | 205 | 26 | 227 | 8.58e-46 | 152 |
MS.gene017060.t1 | AT1G02950 | 40.686 | 204 | 117 | 4 | 4 | 205 | 28 | 229 | 8.59e-46 | 152 |
MS.gene017060.t1 | AT1G02950 | 40.686 | 204 | 117 | 4 | 4 | 205 | 38 | 239 | 1.17e-45 | 152 |
MS.gene017060.t1 | AT1G02940 | 38.095 | 210 | 126 | 4 | 4 | 211 | 40 | 247 | 7.50e-45 | 150 |
MS.gene017060.t1 | AT1G02940 | 38.095 | 210 | 126 | 4 | 4 | 211 | 40 | 247 | 7.50e-45 | 150 |
MS.gene017060.t1 | AT1G02940 | 38.095 | 210 | 126 | 4 | 4 | 211 | 53 | 260 | 1.14e-44 | 150 |
MS.gene017060.t1 | AT1G02940 | 38.095 | 210 | 126 | 4 | 4 | 211 | 65 | 272 | 1.26e-44 | 150 |
MS.gene017060.t1 | AT1G49860 | 39.614 | 207 | 118 | 4 | 9 | 209 | 9 | 214 | 2.07e-42 | 144 |
MS.gene017060.t1 | AT1G02950 | 38.194 | 144 | 86 | 3 | 63 | 205 | 60 | 201 | 2.00e-25 | 99.0 |
MS.gene017060.t1 | AT2G02390 | 31.633 | 98 | 65 | 1 | 11 | 108 | 18 | 113 | 2.33e-11 | 60.8 |
MS.gene017060.t1 | AT2G02390 | 31.633 | 98 | 65 | 1 | 11 | 108 | 18 | 113 | 2.99e-11 | 61.2 |
MS.gene017060.t1 | AT2G02380 | 36.765 | 68 | 43 | 0 | 10 | 77 | 20 | 87 | 9.41e-11 | 59.7 |
Find 62 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TATGAGTCACCTTCCATTTA+TGG | 0.066681 | 5.1:+72235619 | MS.gene017060:CDS |
GATGGAGACTATACCCTTTA+TGG | 0.175031 | 5.1:+72234910 | MS.gene017060:CDS |
GGATTACGTTGTTAGCAATA+TGG | 0.220996 | 5.1:+72235640 | MS.gene017060:CDS |
TCACCCTCCAAGACATTAAT+AGG | 0.249295 | 5.1:-72234721 | None:intergenic |
CTAACAACGTAATCCATAAA+TGG | 0.299561 | 5.1:-72235632 | None:intergenic |
GTTCACAATCTGCAGCCTTT+TGG | 0.299664 | 5.1:+72234868 | MS.gene017060:intron |
TCACTCTCTTCAATCACCTT+TGG | 0.309741 | 5.1:-72235509 | None:intergenic |
GCTATCAAAGAGCAAGTATT+TGG | 0.324415 | 5.1:+72235571 | MS.gene017060:CDS |
GGGGAAGGATTATTTGATAA+AGG | 0.330935 | 5.1:+72235661 | MS.gene017060:CDS |
TCTTCAATCACCTTTGGATC+TGG | 0.357222 | 5.1:-72235503 | None:intergenic |
AAGATACACTTCACTTAAGT+TGG | 0.374978 | 5.1:-72235764 | None:intergenic |
GATTACGTTGTTAGCAATAT+GGG | 0.376580 | 5.1:+72235641 | MS.gene017060:CDS |
TGAGAAGAAAATCGAATTTG+AGG | 0.392525 | 5.1:+72234693 | MS.gene017060:CDS |
GGTTGTCCCTATTAATGTCT+TGG | 0.396323 | 5.1:+72234714 | MS.gene017060:CDS |
ACCTGAGTACCTCAAATTAC+AGG | 0.397815 | 5.1:+72234753 | MS.gene017060:CDS |
ACTGTTCCTGTTATTAAAGA+TGG | 0.400215 | 5.1:+72234892 | MS.gene017060:CDS |
CATCTATTTGTGCAGAGTCT+CGG | 0.401539 | 5.1:+72235300 | MS.gene017060:intron |
ATCTATTTGTGCAGAGTCTC+GGG | 0.405511 | 5.1:+72235301 | MS.gene017060:intron |
TAGTCTCCATCTTTAATAAC+AGG | 0.407930 | 5.1:-72234898 | None:intergenic |
AGGAAAGACAATAGAAGAAA+GGG | 0.428460 | 5.1:+72235376 | MS.gene017060:CDS |
TGAAGAGAGTGAAGCAAAGT+TGG | 0.434591 | 5.1:+72235520 | MS.gene017060:CDS |
AAGACAAACCAACACTCGTT+TGG | 0.452083 | 5.1:-72234668 | None:intergenic |
TCTCAAGGGGTTGAGTTACT+AGG | 0.455527 | 5.1:+72235356 | MS.gene017060:CDS |
GTGAATTAACCTGTAATTTG+AGG | 0.477315 | 5.1:-72234762 | None:intergenic |
TGTCCCTATTAATGTCTTGG+AGG | 0.483266 | 5.1:+72234717 | MS.gene017060:CDS |
ACCTGTAATTTGAGGTACTC+AGG | 0.483901 | 5.1:-72234754 | None:intergenic |
TAGGAAAGACAATAGAAGAA+AGG | 0.489516 | 5.1:+72235375 | MS.gene017060:CDS |
TCGTTTGGCTGAGGCACAGT+GGG | 0.490352 | 5.1:-72234653 | None:intergenic |
GTGCCGTCAGCTAGTAGTGC+AGG | 0.501569 | 5.1:-72235479 | None:intergenic |
TCAAGAACTTTGTTCCATGA+TGG | 0.514235 | 5.1:-72235728 | None:intergenic |
AGGATTATTTGATAAAGGAT+AGG | 0.514814 | 5.1:+72235666 | MS.gene017060:CDS |
CACCCTCCAAGACATTAATA+GGG | 0.516622 | 5.1:-72234720 | None:intergenic |
ATACACTTCACTTAAGTTGG+AGG | 0.517811 | 5.1:-72235761 | None:intergenic |
ATAGGAAGTATGTTAGTGCT+TGG | 0.518602 | 5.1:+72235684 | MS.gene017060:CDS |
GGAAGTATGTTAGTGCTTGG+TGG | 0.519087 | 5.1:+72235687 | MS.gene017060:CDS |
CGTTGTTAGCAATATGGGGA+AGG | 0.521814 | 5.1:+72235646 | MS.gene017060:CDS |
GTCCCTATTAATGTCTTGGA+GGG | 0.525222 | 5.1:+72234718 | MS.gene017060:CDS |
ATAACAGGAACAGTTCCAAA+AGG | 0.526229 | 5.1:-72234883 | None:intergenic |
ACCATGGTAGTGAAGGTGTA+TGG | 0.535696 | 5.1:+72234628 | None:intergenic |
GAAGAGAGTGAAGCAAAGTT+GGG | 0.538644 | 5.1:+72235521 | MS.gene017060:CDS |
TCAAAGAGCAAGTATTTGGC+TGG | 0.546465 | 5.1:+72235575 | MS.gene017060:CDS |
CAGGTCAAATTGTATGCTGA+TGG | 0.554286 | 5.1:-72235443 | None:intergenic |
AATAGAAGAAAGGGGTCTTG+TGG | 0.555254 | 5.1:+72235385 | MS.gene017060:CDS |
TGCAGGAAACAAACAATGAC+AGG | 0.556705 | 5.1:-72235462 | None:intergenic |
TGCCTCAGCCAAACGAGTGT+TGG | 0.558041 | 5.1:+72234660 | MS.gene017060:CDS |
TTTCCTGCACTACTAGCTGA+CGG | 0.566461 | 5.1:+72235476 | MS.gene017060:CDS |
AACCAACACTCGTTTGGCTG+AGG | 0.566743 | 5.1:-72234662 | None:intergenic |
AAACCAAACCATGGTAGTGA+AGG | 0.577644 | 5.1:+72234621 | None:intergenic |
TGTTGAACATTTATGAAGAG+AGG | 0.582845 | 5.1:+72235549 | MS.gene017060:CDS |
CAACGTAATCCATAAATGGA+AGG | 0.597181 | 5.1:-72235628 | None:intergenic |
ACCATACACCTTCACTACCA+TGG | 0.604095 | 5.1:-72234629 | None:intergenic |
GAGTGAAGCAAAGTTGGGCA+AGG | 0.616935 | 5.1:+72235526 | MS.gene017060:CDS |
AAAGGGGTCTTGTGGAACAA+TGG | 0.625869 | 5.1:+72235393 | MS.gene017060:CDS |
ATTACGTTGTTAGCAATATG+GGG | 0.631269 | 5.1:+72235642 | MS.gene017060:CDS |
TGACGGCACTCCAGATCCAA+AGG | 0.632803 | 5.1:+72235493 | MS.gene017060:CDS |
ATATAAGTAGTAGACCATCA+TGG | 0.637766 | 5.1:+72235714 | MS.gene017060:CDS |
CTCGTTTGGCTGAGGCACAG+TGG | 0.639842 | 5.1:-72234654 | None:intergenic |
GGAAAGACAATAGAAGAAAG+GGG | 0.656416 | 5.1:+72235377 | MS.gene017060:CDS |
AGGTCAAATTGTATGCTGAT+GGG | 0.663491 | 5.1:-72235442 | None:intergenic |
TCAAATTGTATGCTGATGGG+TGG | 0.678075 | 5.1:-72235439 | None:intergenic |
GAAGGTGACTCATATCAGCA+AGG | 0.682286 | 5.1:-72235610 | None:intergenic |
CGTTTGGCTGAGGCACAGTG+GGG | 0.723546 | 5.1:-72234652 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAACATATAACCAATAGTAT+TGG | - | chr5.1:72235144-72235163 | None:intergenic | 20.0% |
!! | TCTTATCTACATATTTGATA+TGG | + | chr5.1:72234981-72235000 | MS.gene017060:intron | 20.0% |
!! | TTGGTTATATGTTTAAATCT+TGG | + | chr5.1:72235150-72235169 | MS.gene017060:intron | 20.0% |
! | AGGATTATTTGATAAAGGAT+AGG | + | chr5.1:72235666-72235685 | MS.gene017060:CDS | 25.0% |
! | CTGAAAAATATAGATCTCAA+GGG | + | chr5.1:72235342-72235361 | MS.gene017060:CDS | 25.0% |
! | TCAACAAGATAATACACTAA+TGG | - | chr5.1:72235268-72235287 | None:intergenic | 25.0% |
! | TGAAAAATATAGATCTCAAG+GGG | + | chr5.1:72235343-72235362 | MS.gene017060:CDS | 25.0% |
!! | CCTTGTTTAATATGCTAAAA+AGG | + | chr5.1:72234805-72234824 | MS.gene017060:intron | 25.0% |
!!! | CAAGATGTTTTAACCATAAA+GGG | - | chr5.1:72234926-72234945 | None:intergenic | 25.0% |
!!! | CCTTTTTAGCATATTAAACA+AGG | - | chr5.1:72234808-72234827 | None:intergenic | 25.0% |
!!! | GGTTTTATGTCTCAAAATTT+TGG | + | chr5.1:72235033-72235052 | MS.gene017060:intron | 25.0% |
!!! | TCAAGATGTTTTAACCATAA+AGG | - | chr5.1:72234927-72234946 | None:intergenic | 25.0% |
ACTGTTCCTGTTATTAAAGA+TGG | + | chr5.1:72234892-72234911 | MS.gene017060:CDS | 30.0% | |
AGGAAAGACAATAGAAGAAA+GGG | + | chr5.1:72235376-72235395 | MS.gene017060:CDS | 30.0% | |
ATATAAGTAGTAGACCATCA+TGG | + | chr5.1:72235714-72235733 | MS.gene017060:CDS | 30.0% | |
ATTACGTTGTTAGCAATATG+GGG | + | chr5.1:72235642-72235661 | MS.gene017060:CDS | 30.0% | |
CTAACAACGTAATCCATAAA+TGG | - | chr5.1:72235635-72235654 | None:intergenic | 30.0% | |
GATTACGTTGTTAGCAATAT+GGG | + | chr5.1:72235641-72235660 | MS.gene017060:CDS | 30.0% | |
GCTGAAAAATATAGATCTCA+AGG | + | chr5.1:72235341-72235360 | MS.gene017060:CDS | 30.0% | |
GCTTGTAAACACTTTAAACA+AGG | + | chr5.1:72235012-72235031 | MS.gene017060:intron | 30.0% | |
GTGAATTAACCTGTAATTTG+AGG | - | chr5.1:72234765-72234784 | None:intergenic | 30.0% | |
TAGGAAAGACAATAGAAGAA+AGG | + | chr5.1:72235375-72235394 | MS.gene017060:CDS | 30.0% | |
TAGTCTCCATCTTTAATAAC+AGG | - | chr5.1:72234901-72234920 | None:intergenic | 30.0% | |
TGAGAAGAAAATCGAATTTG+AGG | + | chr5.1:72234693-72234712 | MS.gene017060:CDS | 30.0% | |
TGTTGAACATTTATGAAGAG+AGG | + | chr5.1:72235549-72235568 | MS.gene017060:CDS | 30.0% | |
! | AAGTAGAAAAGCATGACATA+GGG | - | chr5.1:72234950-72234969 | None:intergenic | 30.0% |
! | CATATAACCAATAGTATTGG+AGG | - | chr5.1:72235141-72235160 | None:intergenic | 30.0% |
! | TAAGTAGAAAAGCATGACAT+AGG | - | chr5.1:72234951-72234970 | None:intergenic | 30.0% |
!!! | AAGACCTCAATTTTTTTTCG+AGG | + | chr5.1:72235064-72235083 | MS.gene017060:intron | 30.0% |
!!! | AGACCTCAATTTTTTTTCGA+GGG | + | chr5.1:72235065-72235084 | MS.gene017060:intron | 30.0% |
AGGTCAAATTGTATGCTGAT+GGG | - | chr5.1:72235445-72235464 | None:intergenic | 35.0% | |
ATAACAGGAACAGTTCCAAA+AGG | - | chr5.1:72234886-72234905 | None:intergenic | 35.0% | |
CAACGTAATCCATAAATGGA+AGG | - | chr5.1:72235631-72235650 | None:intergenic | 35.0% | |
CTACCCTCGAAAAAAAATTG+AGG | - | chr5.1:72235071-72235090 | None:intergenic | 35.0% | |
GAAAAGACCTCCAATACTAT+TGG | + | chr5.1:72235131-72235150 | MS.gene017060:intron | 35.0% | |
GCTATCAAAGAGCAAGTATT+TGG | + | chr5.1:72235571-72235590 | MS.gene017060:CDS | 35.0% | |
GGAAAGACAATAGAAGAAAG+GGG | + | chr5.1:72235377-72235396 | MS.gene017060:CDS | 35.0% | |
GGATGAAAGAAAAACAGAAG+AGG | - | chr5.1:72234787-72234806 | None:intergenic | 35.0% | |
GGATTACGTTGTTAGCAATA+TGG | + | chr5.1:72235640-72235659 | MS.gene017060:CDS | 35.0% | |
GGGGAAGGATTATTTGATAA+AGG | + | chr5.1:72235661-72235680 | MS.gene017060:CDS | 35.0% | |
TATGAGTCACCTTCCATTTA+TGG | + | chr5.1:72235619-72235638 | MS.gene017060:CDS | 35.0% | |
TCAAGAACTTTGTTCCATGA+TGG | - | chr5.1:72235731-72235750 | None:intergenic | 35.0% | |
TCGAGGGTAGACATAATATT+TGG | + | chr5.1:72235081-72235100 | MS.gene017060:intron | 35.0% | |
! | ATAGGAAGTATGTTAGTGCT+TGG | + | chr5.1:72235684-72235703 | MS.gene017060:CDS | 35.0% |
AAGACAAACCAACACTCGTT+TGG | - | chr5.1:72234671-72234690 | None:intergenic | 40.0% | |
AATAGAAGAAAGGGGTCTTG+TGG | + | chr5.1:72235385-72235404 | MS.gene017060:CDS | 40.0% | |
ACCTGAGTACCTCAAATTAC+AGG | + | chr5.1:72234753-72234772 | MS.gene017060:CDS | 40.0% | |
ATCTATTTGTGCAGAGTCTC+GGG | + | chr5.1:72235301-72235320 | MS.gene017060:intron | 40.0% | |
CACCCTCCAAGACATTAATA+GGG | - | chr5.1:72234723-72234742 | None:intergenic | 40.0% | |
CAGGTCAAATTGTATGCTGA+TGG | - | chr5.1:72235446-72235465 | None:intergenic | 40.0% | |
CATCTATTTGTGCAGAGTCT+CGG | + | chr5.1:72235300-72235319 | MS.gene017060:intron | 40.0% | |
GAAGAGAGTGAAGCAAAGTT+GGG | + | chr5.1:72235521-72235540 | MS.gene017060:CDS | 40.0% | |
GATGGAGACTATACCCTTTA+TGG | + | chr5.1:72234910-72234929 | MS.gene017060:CDS | 40.0% | |
GGTTGTCCCTATTAATGTCT+TGG | + | chr5.1:72234714-72234733 | MS.gene017060:CDS | 40.0% | |
GTCCCTATTAATGTCTTGGA+GGG | + | chr5.1:72234718-72234737 | MS.gene017060:CDS | 40.0% | |
TCAAAGAGCAAGTATTTGGC+TGG | + | chr5.1:72235575-72235594 | MS.gene017060:CDS | 40.0% | |
TCAAATTGTATGCTGATGGG+TGG | - | chr5.1:72235442-72235461 | None:intergenic | 40.0% | |
TCACCCTCCAAGACATTAAT+AGG | - | chr5.1:72234724-72234743 | None:intergenic | 40.0% | |
TCACTCTCTTCAATCACCTT+TGG | - | chr5.1:72235512-72235531 | None:intergenic | 40.0% | |
TCTTCAATCACCTTTGGATC+TGG | - | chr5.1:72235506-72235525 | None:intergenic | 40.0% | |
TGAAGAGAGTGAAGCAAAGT+TGG | + | chr5.1:72235520-72235539 | MS.gene017060:CDS | 40.0% | |
TGCAGGAAACAAACAATGAC+AGG | - | chr5.1:72235465-72235484 | None:intergenic | 40.0% | |
TGTCCCTATTAATGTCTTGG+AGG | + | chr5.1:72234717-72234736 | MS.gene017060:CDS | 40.0% | |
! | ACCTGTAATTTGAGGTACTC+AGG | - | chr5.1:72234757-72234776 | None:intergenic | 40.0% |
CGTTGTTAGCAATATGGGGA+AGG | + | chr5.1:72235646-72235665 | MS.gene017060:CDS | 45.0% | |
GAAGGTGACTCATATCAGCA+AGG | - | chr5.1:72235613-72235632 | None:intergenic | 45.0% | |
TCTCAAGGGGTTGAGTTACT+AGG | + | chr5.1:72235356-72235375 | MS.gene017060:CDS | 45.0% | |
TTTCCTGCACTACTAGCTGA+CGG | + | chr5.1:72235476-72235495 | MS.gene017060:CDS | 45.0% | |
! | AAAGGGGTCTTGTGGAACAA+TGG | + | chr5.1:72235393-72235412 | MS.gene017060:CDS | 45.0% |
! | GGAAGTATGTTAGTGCTTGG+TGG | + | chr5.1:72235687-72235706 | MS.gene017060:CDS | 45.0% |
! | GTTCACAATCTGCAGCCTTT+TGG | + | chr5.1:72234868-72234887 | MS.gene017060:intron | 45.0% |
!!! | TATAAAAAAATCATTTTAAA+AGG | + | chr5.1:72235189-72235208 | MS.gene017060:intron | 5.0% |
!!! | TTTTTTTATAAAAATATTTG+TGG | - | chr5.1:72235179-72235198 | None:intergenic | 5.0% |
AACCAACACTCGTTTGGCTG+AGG | - | chr5.1:72234665-72234684 | None:intergenic | 50.0% | |
GAGTGAAGCAAAGTTGGGCA+AGG | + | chr5.1:72235526-72235545 | MS.gene017060:CDS | 50.0% | |
TCGTTTGGCTGAGGCACAGT+GGG | - | chr5.1:72234656-72234675 | None:intergenic | 55.0% | |
TGACGGCACTCCAGATCCAA+AGG | + | chr5.1:72235493-72235512 | MS.gene017060:CDS | 55.0% | |
TGCCTCAGCCAAACGAGTGT+TGG | + | chr5.1:72234660-72234679 | MS.gene017060:CDS | 55.0% | |
CGTTTGGCTGAGGCACAGTG+GGG | - | chr5.1:72234655-72234674 | None:intergenic | 60.0% | |
CTCGTTTGGCTGAGGCACAG+TGG | - | chr5.1:72234657-72234676 | None:intergenic | 60.0% | |
GTGCCGTCAGCTAGTAGTGC+AGG | - | chr5.1:72235482-72235501 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 72234631 | 72235772 | 72234631 | ID=MS.gene017060 |
chr5.1 | mRNA | 72234631 | 72235772 | 72234631 | ID=MS.gene017060.t1;Parent=MS.gene017060 |
chr5.1 | exon | 72234631 | 72234774 | 72234631 | ID=MS.gene017060.t1.exon1;Parent=MS.gene017060.t1 |
chr5.1 | CDS | 72234631 | 72234774 | 72234631 | ID=cds.MS.gene017060.t1;Parent=MS.gene017060.t1 |
chr5.1 | exon | 72234883 | 72234931 | 72234883 | ID=MS.gene017060.t1.exon2;Parent=MS.gene017060.t1 |
chr5.1 | CDS | 72234883 | 72234931 | 72234883 | ID=cds.MS.gene017060.t1;Parent=MS.gene017060.t1 |
chr5.1 | exon | 72235315 | 72235772 | 72235315 | ID=MS.gene017060.t1.exon3;Parent=MS.gene017060.t1 |
chr5.1 | CDS | 72235315 | 72235772 | 72235315 | ID=cds.MS.gene017060.t1;Parent=MS.gene017060.t1 |
Gene Sequence |
Protein sequence |