Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47714.t1 | XP_003617376.1 | 92.1 | 215 | 17 | 0 | 1 | 215 | 1 | 215 | 4.80E-113 | 417.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47714.t1 | O80852 | 62.5 | 216 | 78 | 2 | 1 | 215 | 1 | 214 | 3.6e-77 | 289.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47714.t1 | G7K3B0 | 92.1 | 215 | 17 | 0 | 1 | 215 | 1 | 215 | 3.5e-113 | 417.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050060 | MS.gene47714 | 0.841716 | 4.01E-58 | -1.69E-46 |
| MS.gene050133 | MS.gene47714 | -0.810364 | 1.20E-50 | -1.69E-46 |
| MS.gene050406 | MS.gene47714 | 0.827536 | 1.48E-54 | -1.69E-46 |
| MS.gene050426 | MS.gene47714 | -0.847828 | 9.03E-60 | -1.69E-46 |
| MS.gene050529 | MS.gene47714 | 0.805647 | 1.21E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene47714 | 0.803525 | 3.34E-49 | -1.69E-46 |
| MS.gene050971 | MS.gene47714 | 0.803283 | 3.75E-49 | -1.69E-46 |
| MS.gene052077 | MS.gene47714 | 0.810001 | 1.43E-50 | -1.69E-46 |
| MS.gene052134 | MS.gene47714 | 0.807413 | 5.12E-50 | -1.69E-46 |
| MS.gene052135 | MS.gene47714 | 0.813664 | 2.28E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene47714 | 0.827432 | 1.57E-54 | -1.69E-46 |
| MS.gene052340 | MS.gene47714 | 0.837097 | 6.35E-57 | -1.69E-46 |
| MS.gene052469 | MS.gene47714 | 0.838456 | 2.85E-57 | -1.69E-46 |
| MS.gene052758 | MS.gene47714 | 0.800344 | 1.51E-48 | -1.69E-46 |
| MS.gene053330 | MS.gene47714 | 0.805335 | 1.40E-49 | -1.69E-46 |
| MS.gene053928 | MS.gene47714 | 0.824046 | 9.98E-54 | -1.69E-46 |
| MS.gene054349 | MS.gene47714 | 0.857782 | 1.29E-62 | -1.69E-46 |
| MS.gene055116 | MS.gene47714 | 0.806815 | 6.85E-50 | -1.69E-46 |
| MS.gene055539 | MS.gene47714 | 0.828543 | 8.48E-55 | -1.69E-46 |
| MS.gene05553 | MS.gene47714 | 0.846728 | 1.81E-59 | -1.69E-46 |
| MS.gene05556 | MS.gene47714 | 0.816112 | 6.54E-52 | -1.69E-46 |
| MS.gene055741 | MS.gene47714 | 0.807567 | 4.75E-50 | -1.69E-46 |
| MS.gene055744 | MS.gene47714 | 0.818856 | 1.58E-52 | -1.69E-46 |
| MS.gene056233 | MS.gene47714 | 0.851966 | 6.29E-61 | -1.69E-46 |
| MS.gene056659 | MS.gene47714 | 0.84085 | 6.78E-58 | -1.69E-46 |
| MS.gene056723 | MS.gene47714 | 0.811552 | 6.61E-51 | -1.69E-46 |
| MS.gene056899 | MS.gene47714 | -0.812837 | 3.47E-51 | -1.69E-46 |
| MS.gene057396 | MS.gene47714 | 0.876476 | 1.35E-68 | -1.69E-46 |
| MS.gene057749 | MS.gene47714 | 0.805712 | 1.17E-49 | -1.69E-46 |
| MS.gene058928 | MS.gene47714 | 0.826664 | 2.40E-54 | -1.69E-46 |
| MS.gene059011 | MS.gene47714 | 0.816884 | 4.39E-52 | -1.69E-46 |
| MS.gene059285 | MS.gene47714 | 0.811221 | 7.80E-51 | -1.69E-46 |
| MS.gene059420 | MS.gene47714 | 0.836705 | 8.00E-57 | -1.69E-46 |
| MS.gene059717 | MS.gene47714 | 0.813557 | 2.41E-51 | -1.69E-46 |
| MS.gene060247 | MS.gene47714 | 0.806481 | 8.06E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene47714 | 0.801005 | 1.10E-48 | -1.69E-46 |
| MS.gene061154 | MS.gene47714 | 0.817581 | 3.06E-52 | -1.69E-46 |
| MS.gene061159 | MS.gene47714 | 0.849241 | 3.67E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene47714 | MS.gene03034 | PPI |
| MS.gene019183 | MS.gene47714 | PPI |
| MS.gene22195 | MS.gene47714 | PPI |
| MS.gene47714 | MS.gene048703 | PPI |
| MS.gene048743 | MS.gene47714 | PPI |
| MS.gene000510 | MS.gene47714 | PPI |
| MS.gene47714 | MS.gene69499 | PPI |
| MS.gene47714 | MS.gene48032 | PPI |
| MS.gene47714 | MS.gene69505 | PPI |
| MS.gene030405 | MS.gene47714 | PPI |
| MS.gene005621 | MS.gene47714 | PPI |
| MS.gene47714 | MS.gene017062 | PPI |
| MS.gene47714 | MS.gene07192 | PPI |
| MS.gene47714 | MS.gene019181 | PPI |
| MS.gene04976 | MS.gene47714 | PPI |
| MS.gene038277 | MS.gene47714 | PPI |
| MS.gene008334 | MS.gene47714 | PPI |
| MS.gene47714 | MS.gene048797 | PPI |
| MS.gene008337 | MS.gene47714 | PPI |
| MS.gene47714 | MS.gene061566 | PPI |
| MS.gene47714 | MS.gene049699 | PPI |
| MS.gene47714 | MS.gene22188 | PPI |
| MS.gene20711 | MS.gene47714 | PPI |
| MS.gene008278 | MS.gene47714 | PPI |
| MS.gene47714 | MS.gene83384 | PPI |
| MS.gene47714 | MS.gene72151 | PPI |
| MS.gene47714 | MS.gene22196 | PPI |
| MS.gene019181 | MS.gene47714 | PPI |
| MS.gene47714 | MS.gene48030 | PPI |
| MS.gene47714 | MS.gene049706 | PPI |
| MS.gene017060 | MS.gene47714 | PPI |
| MS.gene47714 | MS.gene05016 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47714.t1 | MTR_5g090910 | 92.093 | 215 | 17 | 0 | 1 | 215 | 1 | 215 | 1.37e-148 | 412 |
| MS.gene47714.t1 | MTR_5g090920 | 89.352 | 216 | 23 | 0 | 1 | 216 | 1 | 216 | 1.61e-144 | 402 |
| MS.gene47714.t1 | MTR_3g450790 | 69.585 | 217 | 63 | 2 | 1 | 216 | 1 | 215 | 1.02e-109 | 313 |
| MS.gene47714.t1 | MTR_3g450930 | 70.370 | 216 | 61 | 2 | 1 | 215 | 1 | 214 | 4.19e-109 | 312 |
| MS.gene47714.t1 | MTR_5g090910 | 90.066 | 151 | 15 | 0 | 65 | 215 | 8 | 158 | 7.91e-100 | 286 |
| MS.gene47714.t1 | MTR_3g064700 | 52.778 | 216 | 96 | 4 | 1 | 213 | 1 | 213 | 1.19e-75 | 227 |
| MS.gene47714.t1 | MTR_1g026140 | 42.922 | 219 | 118 | 4 | 3 | 215 | 5 | 222 | 1.39e-56 | 179 |
| MS.gene47714.t1 | MTR_1g088840 | 42.925 | 212 | 116 | 4 | 2 | 211 | 3 | 211 | 2.87e-56 | 178 |
| MS.gene47714.t1 | MTR_1g088825 | 42.925 | 212 | 116 | 4 | 2 | 211 | 3 | 211 | 2.87e-56 | 178 |
| MS.gene47714.t1 | MTR_1g088850 | 43.128 | 211 | 116 | 4 | 1 | 209 | 1 | 209 | 6.76e-55 | 174 |
| MS.gene47714.t1 | MTR_1g088845 | 43.396 | 212 | 115 | 4 | 2 | 211 | 3 | 211 | 1.16e-53 | 171 |
| MS.gene47714.t1 | MTR_1g088840 | 42.771 | 166 | 91 | 3 | 47 | 211 | 2 | 164 | 1.02e-42 | 142 |
| MS.gene47714.t1 | MTR_1g088840 | 45.217 | 115 | 59 | 3 | 98 | 211 | 4 | 115 | 1.70e-27 | 101 |
| MS.gene47714.t1 | MTR_1g492670 | 48.485 | 66 | 33 | 1 | 146 | 211 | 2 | 66 | 1.26e-15 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47714.t1 | AT2G30860 | 62.212 | 217 | 79 | 2 | 1 | 216 | 1 | 215 | 1.16e-100 | 291 |
| MS.gene47714.t1 | AT2G30870 | 58.525 | 217 | 87 | 2 | 1 | 216 | 1 | 215 | 3.43e-90 | 264 |
| MS.gene47714.t1 | AT3G03190 | 48.826 | 213 | 105 | 3 | 1 | 211 | 1 | 211 | 1.88e-68 | 209 |
| MS.gene47714.t1 | AT2G30860 | 61.290 | 155 | 57 | 2 | 1 | 154 | 1 | 153 | 1.12e-65 | 200 |
| MS.gene47714.t1 | AT5G17220 | 45.283 | 212 | 114 | 2 | 1 | 211 | 1 | 211 | 2.07e-63 | 196 |
| MS.gene47714.t1 | AT3G62760 | 45.714 | 210 | 110 | 4 | 1 | 208 | 1 | 208 | 2.58e-59 | 186 |
| MS.gene47714.t1 | AT2G47730 | 41.706 | 211 | 119 | 4 | 5 | 213 | 54 | 262 | 3.38e-55 | 177 |
| MS.gene47714.t1 | AT2G47730 | 41.706 | 211 | 119 | 4 | 5 | 213 | 54 | 262 | 3.38e-55 | 177 |
| MS.gene47714.t1 | AT1G02930 | 41.827 | 208 | 117 | 4 | 3 | 209 | 4 | 208 | 3.68e-51 | 165 |
| MS.gene47714.t1 | AT1G02930 | 41.827 | 208 | 117 | 4 | 3 | 209 | 4 | 208 | 3.68e-51 | 165 |
| MS.gene47714.t1 | AT2G02930 | 42.180 | 211 | 116 | 4 | 3 | 209 | 4 | 212 | 1.96e-50 | 163 |
| MS.gene47714.t1 | AT1G02920 | 42.308 | 208 | 117 | 3 | 3 | 209 | 4 | 209 | 2.56e-50 | 162 |
| MS.gene47714.t1 | AT4G02520 | 40.952 | 210 | 118 | 4 | 3 | 208 | 4 | 211 | 6.05e-50 | 162 |
| MS.gene47714.t1 | AT1G02950 | 40.686 | 204 | 117 | 4 | 4 | 205 | 26 | 227 | 8.49e-46 | 152 |
| MS.gene47714.t1 | AT1G02950 | 40.686 | 204 | 117 | 4 | 4 | 205 | 26 | 227 | 8.49e-46 | 152 |
| MS.gene47714.t1 | AT1G02950 | 40.686 | 204 | 117 | 4 | 4 | 205 | 28 | 229 | 9.27e-46 | 152 |
| MS.gene47714.t1 | AT1G02950 | 40.686 | 204 | 117 | 4 | 4 | 205 | 38 | 239 | 1.18e-45 | 152 |
| MS.gene47714.t1 | AT1G02940 | 38.095 | 210 | 126 | 4 | 4 | 211 | 40 | 247 | 4.67e-45 | 150 |
| MS.gene47714.t1 | AT1G02940 | 38.095 | 210 | 126 | 4 | 4 | 211 | 40 | 247 | 4.67e-45 | 150 |
| MS.gene47714.t1 | AT1G02940 | 38.095 | 210 | 126 | 4 | 4 | 211 | 65 | 272 | 6.60e-45 | 151 |
| MS.gene47714.t1 | AT1G02940 | 38.095 | 210 | 126 | 4 | 4 | 211 | 53 | 260 | 7.04e-45 | 150 |
| MS.gene47714.t1 | AT1G49860 | 40.097 | 207 | 117 | 4 | 9 | 209 | 9 | 214 | 4.04e-43 | 145 |
| MS.gene47714.t1 | AT1G02950 | 38.194 | 144 | 86 | 3 | 63 | 205 | 60 | 201 | 2.05e-25 | 99.0 |
| MS.gene47714.t1 | AT2G02390 | 31.633 | 98 | 65 | 1 | 11 | 108 | 18 | 113 | 2.33e-11 | 60.8 |
| MS.gene47714.t1 | AT2G02390 | 31.633 | 98 | 65 | 1 | 11 | 108 | 18 | 113 | 2.96e-11 | 61.2 |
| MS.gene47714.t1 | AT2G02380 | 36.765 | 68 | 43 | 0 | 10 | 77 | 20 | 87 | 9.79e-11 | 59.7 |
Find 62 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGAGTCACCTTCCATTTA+TGG | 0.066681 | 5.3:+73102510 | MS.gene47714:CDS |
| GATGGAGACTATACCCTTTA+TGG | 0.175031 | 5.3:+73101802 | MS.gene47714:CDS |
| GGATTACGTTGTTAACAATA+TGG | 0.214666 | 5.3:+73102531 | MS.gene47714:CDS |
| TCACCCTCCAAGACATTAAT+AGG | 0.249295 | 5.3:-73101602 | None:intergenic |
| GTTCACAATCTGCAGCCTTT+TGG | 0.299664 | 5.3:+73101760 | MS.gene47714:intron |
| TCACTCTCTTCAATCACCTT+TGG | 0.309741 | 5.3:-73102400 | None:intergenic |
| TTAACAACGTAATCCATAAA+TGG | 0.311970 | 5.3:-73102523 | None:intergenic |
| GCTATCAAAGAGCAAGTATT+TGG | 0.324415 | 5.3:+73102462 | MS.gene47714:CDS |
| GGGGAAGGATTATTTGATAA+AGG | 0.330935 | 5.3:+73102552 | MS.gene47714:CDS |
| TCTTCAATCACCTTTGGATC+TGG | 0.357222 | 5.3:-73102394 | None:intergenic |
| AAGATACACTTCACTTAAGT+TGG | 0.360751 | 5.3:-73102655 | None:intergenic |
| TGAGAAGAAAATCGAATTTG+AGG | 0.392525 | 5.3:+73101574 | MS.gene47714:CDS |
| GGTTGTCCCTATTAATGTCT+TGG | 0.396323 | 5.3:+73101595 | MS.gene47714:CDS |
| ACCTGAGTACCTCAAATTAC+AGG | 0.397815 | 5.3:+73101634 | MS.gene47714:CDS |
| ACTGTTCCTGTTATTAAAGA+TGG | 0.400215 | 5.3:+73101784 | MS.gene47714:CDS |
| CATCTATTTGTGCAGAGTCT+CGG | 0.401539 | 5.3:+73102191 | MS.gene47714:intron |
| ATCTATTTGTGCAGAGTCTC+GGG | 0.405511 | 5.3:+73102192 | MS.gene47714:intron |
| TAGTCTCCATCTTTAATAAC+AGG | 0.407930 | 5.3:-73101790 | None:intergenic |
| GATTACGTTGTTAACAATAT+GGG | 0.426681 | 5.3:+73102532 | MS.gene47714:CDS |
| AGGAAAGACAATAGAAGAAA+GGG | 0.428460 | 5.3:+73102267 | MS.gene47714:CDS |
| TGAAGAGAGTGAAGCAAAGT+TGG | 0.434591 | 5.3:+73102411 | MS.gene47714:CDS |
| TCTCAAGGGGTTGAGTTACT+AGG | 0.455527 | 5.3:+73102247 | MS.gene47714:CDS |
| GTGAATTAACCTGTAATTTG+AGG | 0.477315 | 5.3:-73101643 | None:intergenic |
| TGTCCCTATTAATGTCTTGG+AGG | 0.483266 | 5.3:+73101598 | MS.gene47714:CDS |
| ACCTGTAATTTGAGGTACTC+AGG | 0.483901 | 5.3:-73101635 | None:intergenic |
| TGCCTCAGCCAAACGTGTGC+TGG | 0.487135 | 5.3:+73101541 | MS.gene47714:CDS |
| TAGGAAAGACAATAGAAGAA+AGG | 0.489516 | 5.3:+73102266 | MS.gene47714:CDS |
| GTGCCGTCAGCTAGTAGTGC+AGG | 0.501569 | 5.3:-73102370 | None:intergenic |
| ACGTTTGGCTGAGGCACAGT+GGG | 0.504539 | 5.3:-73101534 | None:intergenic |
| TCAAGAACTTTGTTCCATGA+TGG | 0.514235 | 5.3:-73102619 | None:intergenic |
| AGGATTATTTGATAAAGGAT+AGG | 0.514814 | 5.3:+73102557 | MS.gene47714:CDS |
| CACCCTCCAAGACATTAATA+GGG | 0.516622 | 5.3:-73101601 | None:intergenic |
| AAGACAAACCAGCACACGTT+TGG | 0.517164 | 5.3:-73101549 | None:intergenic |
| ATACACTTCACTTAAGTTGG+AGG | 0.517811 | 5.3:-73102652 | None:intergenic |
| ATAGGAAGTATGTTAGTGCT+TGG | 0.518602 | 5.3:+73102575 | MS.gene47714:CDS |
| GGAAGTATGTTAGTGCTTGG+TGG | 0.519087 | 5.3:+73102578 | MS.gene47714:CDS |
| GTCCCTATTAATGTCTTGGA+GGG | 0.525222 | 5.3:+73101599 | MS.gene47714:CDS |
| ATAACAGGAACAGTTCCAAA+AGG | 0.526229 | 5.3:-73101775 | None:intergenic |
| CGTTGTTAACAATATGGGGA+AGG | 0.527650 | 5.3:+73102537 | MS.gene47714:CDS |
| ACCATGGTAGTGAAGGTGTA+TGG | 0.535696 | 5.3:+73101509 | None:intergenic |
| GAAGAGAGTGAAGCAAAGTT+GGG | 0.538644 | 5.3:+73102412 | MS.gene47714:CDS |
| TCAAAGAGCAAGTATTTGGC+TGG | 0.546465 | 5.3:+73102466 | MS.gene47714:CDS |
| CAGGTCAAATTGTATGCTGA+TGG | 0.554286 | 5.3:-73102334 | None:intergenic |
| AATAGAAGAAAGGGGTCTTG+TGG | 0.555254 | 5.3:+73102276 | MS.gene47714:CDS |
| TGCAGGAAACAAACAATGAC+AGG | 0.556705 | 5.3:-73102353 | None:intergenic |
| TTTCCTGCACTACTAGCTGA+CGG | 0.566461 | 5.3:+73102367 | MS.gene47714:CDS |
| AAACCAAACCATGGTAGTGA+AGG | 0.577644 | 5.3:+73101502 | None:intergenic |
| TGTTGAACATTTATGAAGAG+AGG | 0.582845 | 5.3:+73102440 | MS.gene47714:CDS |
| ATTACGTTGTTAACAATATG+GGG | 0.584797 | 5.3:+73102533 | MS.gene47714:CDS |
| AACCAGCACACGTTTGGCTG+AGG | 0.587059 | 5.3:-73101543 | None:intergenic |
| CAACGTAATCCATAAATGGA+AGG | 0.591331 | 5.3:-73102519 | None:intergenic |
| ACCATACACCTTCACTACCA+TGG | 0.604095 | 5.3:-73101510 | None:intergenic |
| GAGTGAAGCAAAGTTGGGCA+AGG | 0.616935 | 5.3:+73102417 | MS.gene47714:CDS |
| AAAGGGGTCTTGTGGAACAA+TGG | 0.625869 | 5.3:+73102284 | MS.gene47714:CDS |
| CACGTTTGGCTGAGGCACAG+TGG | 0.626355 | 5.3:-73101535 | None:intergenic |
| TGACGGCACTCCAGATCCAA+AGG | 0.632803 | 5.3:+73102384 | MS.gene47714:CDS |
| ATATAAGTAGTAGACCATCA+TGG | 0.637766 | 5.3:+73102605 | MS.gene47714:CDS |
| GGAAAGACAATAGAAGAAAG+GGG | 0.656416 | 5.3:+73102268 | MS.gene47714:CDS |
| AGGTCAAATTGTATGCTGAT+GGG | 0.663491 | 5.3:-73102333 | None:intergenic |
| TCAAATTGTATGCTGATGGG+TGG | 0.678075 | 5.3:-73102330 | None:intergenic |
| GAAGGTGACTCATATCAGCA+AGG | 0.682286 | 5.3:-73102501 | None:intergenic |
| CGTTTGGCTGAGGCACAGTG+GGG | 0.742956 | 5.3:-73101533 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAAAAAAATAATTTTAAA+AGG | + | chr5.3:73102080-73102099 | MS.gene47714:intron | 0.0% |
| !! | AAACATATAACCAATAGTAT+TGG | - | chr5.3:73102035-73102054 | None:intergenic | 20.0% |
| !! | TCTTATCTACATATTTGATA+TGG | + | chr5.3:73101873-73101892 | MS.gene47714:intron | 20.0% |
| !! | TTGGTTATATGTTTAAATCT+TGG | + | chr5.3:73102041-73102060 | MS.gene47714:intron | 20.0% |
| !!! | ACTTTTTAGCATATTAAACA+AGG | - | chr5.3:73101689-73101708 | None:intergenic | 20.0% |
| ! | AGGATTATTTGATAAAGGAT+AGG | + | chr5.3:73102557-73102576 | MS.gene47714:CDS | 25.0% |
| ! | ATTACGTTGTTAACAATATG+GGG | + | chr5.3:73102533-73102552 | MS.gene47714:CDS | 25.0% |
| ! | CTGAAAAATATAGATCTCAA+GGG | + | chr5.3:73102233-73102252 | MS.gene47714:CDS | 25.0% |
| ! | GATTACGTTGTTAACAATAT+GGG | + | chr5.3:73102532-73102551 | MS.gene47714:CDS | 25.0% |
| ! | TCAACAAGATAATACACTAA+TGG | - | chr5.3:73102159-73102178 | None:intergenic | 25.0% |
| ! | TGAAAAATATAGATCTCAAG+GGG | + | chr5.3:73102234-73102253 | MS.gene47714:CDS | 25.0% |
| ! | TTAACAACGTAATCCATAAA+TGG | - | chr5.3:73102526-73102545 | None:intergenic | 25.0% |
| !!! | AAGACCTCAATTTTTTTTTG+AGG | + | chr5.3:73101956-73101975 | MS.gene47714:intron | 25.0% |
| !!! | AGACCTCAATTTTTTTTTGA+GGG | + | chr5.3:73101957-73101976 | MS.gene47714:intron | 25.0% |
| !!! | CAAGATGTTTTAACCATAAA+GGG | - | chr5.3:73101818-73101837 | None:intergenic | 25.0% |
| !!! | GGTTTTATGTCTCAAAATTT+TGG | + | chr5.3:73101925-73101944 | MS.gene47714:intron | 25.0% |
| !!! | TCAAGATGTTTTAACCATAA+AGG | - | chr5.3:73101819-73101838 | None:intergenic | 25.0% |
| ACTGTTCCTGTTATTAAAGA+TGG | + | chr5.3:73101784-73101803 | MS.gene47714:CDS | 30.0% | |
| AGGAAAGACAATAGAAGAAA+GGG | + | chr5.3:73102267-73102286 | MS.gene47714:CDS | 30.0% | |
| ATATAAGTAGTAGACCATCA+TGG | + | chr5.3:73102605-73102624 | MS.gene47714:CDS | 30.0% | |
| CTACCCTCAAAAAAAAATTG+AGG | - | chr5.3:73101963-73101982 | None:intergenic | 30.0% | |
| GCTGAAAAATATAGATCTCA+AGG | + | chr5.3:73102232-73102251 | MS.gene47714:CDS | 30.0% | |
| GCTTGTAAACACTTTAAACA+AGG | + | chr5.3:73101904-73101923 | MS.gene47714:intron | 30.0% | |
| GGATTACGTTGTTAACAATA+TGG | + | chr5.3:73102531-73102550 | MS.gene47714:CDS | 30.0% | |
| GTGAATTAACCTGTAATTTG+AGG | - | chr5.3:73101646-73101665 | None:intergenic | 30.0% | |
| TAGGAAAGACAATAGAAGAA+AGG | + | chr5.3:73102266-73102285 | MS.gene47714:CDS | 30.0% | |
| TAGTCTCCATCTTTAATAAC+AGG | - | chr5.3:73101793-73101812 | None:intergenic | 30.0% | |
| TGAGAAGAAAATCGAATTTG+AGG | + | chr5.3:73101574-73101593 | MS.gene47714:CDS | 30.0% | |
| TGTTGAACATTTATGAAGAG+AGG | + | chr5.3:73102440-73102459 | MS.gene47714:CDS | 30.0% | |
| TTGAGGGTAGACATAATATT+TGG | + | chr5.3:73101973-73101992 | MS.gene47714:intron | 30.0% | |
| ! | AAGTAGAAAAGCATGACATA+GGG | - | chr5.3:73101842-73101861 | None:intergenic | 30.0% |
| ! | CATATAACCAATAGTATTGG+AGG | - | chr5.3:73102032-73102051 | None:intergenic | 30.0% |
| ! | TAAGTAGAAAAGCATGACAT+AGG | - | chr5.3:73101843-73101862 | None:intergenic | 30.0% |
| AGGTCAAATTGTATGCTGAT+GGG | - | chr5.3:73102336-73102355 | None:intergenic | 35.0% | |
| ATAACAGGAACAGTTCCAAA+AGG | - | chr5.3:73101778-73101797 | None:intergenic | 35.0% | |
| CAACGTAATCCATAAATGGA+AGG | - | chr5.3:73102522-73102541 | None:intergenic | 35.0% | |
| GAAAAGACCTCCAATACTAT+TGG | + | chr5.3:73102022-73102041 | MS.gene47714:intron | 35.0% | |
| GCTATCAAAGAGCAAGTATT+TGG | + | chr5.3:73102462-73102481 | MS.gene47714:CDS | 35.0% | |
| GGAAAGACAATAGAAGAAAG+GGG | + | chr5.3:73102268-73102287 | MS.gene47714:CDS | 35.0% | |
| GGATGAAAGAAAAACAGAAG+AGG | - | chr5.3:73101668-73101687 | None:intergenic | 35.0% | |
| GGGGAAGGATTATTTGATAA+AGG | + | chr5.3:73102552-73102571 | MS.gene47714:CDS | 35.0% | |
| TATGAGTCACCTTCCATTTA+TGG | + | chr5.3:73102510-73102529 | MS.gene47714:CDS | 35.0% | |
| TCAAGAACTTTGTTCCATGA+TGG | - | chr5.3:73102622-73102641 | None:intergenic | 35.0% | |
| ! | ATAGGAAGTATGTTAGTGCT+TGG | + | chr5.3:73102575-73102594 | MS.gene47714:CDS | 35.0% |
| AATAGAAGAAAGGGGTCTTG+TGG | + | chr5.3:73102276-73102295 | MS.gene47714:CDS | 40.0% | |
| ACCTGAGTACCTCAAATTAC+AGG | + | chr5.3:73101634-73101653 | MS.gene47714:CDS | 40.0% | |
| ATCTATTTGTGCAGAGTCTC+GGG | + | chr5.3:73102192-73102211 | MS.gene47714:intron | 40.0% | |
| CACCCTCCAAGACATTAATA+GGG | - | chr5.3:73101604-73101623 | None:intergenic | 40.0% | |
| CAGGTCAAATTGTATGCTGA+TGG | - | chr5.3:73102337-73102356 | None:intergenic | 40.0% | |
| CATCTATTTGTGCAGAGTCT+CGG | + | chr5.3:73102191-73102210 | MS.gene47714:intron | 40.0% | |
| CGTTGTTAACAATATGGGGA+AGG | + | chr5.3:73102537-73102556 | MS.gene47714:CDS | 40.0% | |
| GAAGAGAGTGAAGCAAAGTT+GGG | + | chr5.3:73102412-73102431 | MS.gene47714:CDS | 40.0% | |
| GATGGAGACTATACCCTTTA+TGG | + | chr5.3:73101802-73101821 | MS.gene47714:CDS | 40.0% | |
| GGTTGTCCCTATTAATGTCT+TGG | + | chr5.3:73101595-73101614 | MS.gene47714:CDS | 40.0% | |
| GTCCCTATTAATGTCTTGGA+GGG | + | chr5.3:73101599-73101618 | MS.gene47714:CDS | 40.0% | |
| TCAAAGAGCAAGTATTTGGC+TGG | + | chr5.3:73102466-73102485 | MS.gene47714:CDS | 40.0% | |
| TCAAATTGTATGCTGATGGG+TGG | - | chr5.3:73102333-73102352 | None:intergenic | 40.0% | |
| TCACCCTCCAAGACATTAAT+AGG | - | chr5.3:73101605-73101624 | None:intergenic | 40.0% | |
| TCACTCTCTTCAATCACCTT+TGG | - | chr5.3:73102403-73102422 | None:intergenic | 40.0% | |
| TCTTCAATCACCTTTGGATC+TGG | - | chr5.3:73102397-73102416 | None:intergenic | 40.0% | |
| TGAAGAGAGTGAAGCAAAGT+TGG | + | chr5.3:73102411-73102430 | MS.gene47714:CDS | 40.0% | |
| TGCAGGAAACAAACAATGAC+AGG | - | chr5.3:73102356-73102375 | None:intergenic | 40.0% | |
| TGTCCCTATTAATGTCTTGG+AGG | + | chr5.3:73101598-73101617 | MS.gene47714:CDS | 40.0% | |
| ! | ACCTGTAATTTGAGGTACTC+AGG | - | chr5.3:73101638-73101657 | None:intergenic | 40.0% |
| AAGACAAACCAGCACACGTT+TGG | - | chr5.3:73101552-73101571 | None:intergenic | 45.0% | |
| GAAGGTGACTCATATCAGCA+AGG | - | chr5.3:73102504-73102523 | None:intergenic | 45.0% | |
| TCTCAAGGGGTTGAGTTACT+AGG | + | chr5.3:73102247-73102266 | MS.gene47714:CDS | 45.0% | |
| TTTCCTGCACTACTAGCTGA+CGG | + | chr5.3:73102367-73102386 | MS.gene47714:CDS | 45.0% | |
| ! | AAAGGGGTCTTGTGGAACAA+TGG | + | chr5.3:73102284-73102303 | MS.gene47714:CDS | 45.0% |
| ! | GGAAGTATGTTAGTGCTTGG+TGG | + | chr5.3:73102578-73102597 | MS.gene47714:CDS | 45.0% |
| ! | GTTCACAATCTGCAGCCTTT+TGG | + | chr5.3:73101760-73101779 | MS.gene47714:intron | 45.0% |
| !!! | TTTTTTTATAAAAATATTTG+TGG | - | chr5.3:73102070-73102089 | None:intergenic | 5.0% |
| GAGTGAAGCAAAGTTGGGCA+AGG | + | chr5.3:73102417-73102436 | MS.gene47714:CDS | 50.0% | |
| AACCAGCACACGTTTGGCTG+AGG | - | chr5.3:73101546-73101565 | None:intergenic | 55.0% | |
| ACGTTTGGCTGAGGCACAGT+GGG | - | chr5.3:73101537-73101556 | None:intergenic | 55.0% | |
| TGACGGCACTCCAGATCCAA+AGG | + | chr5.3:73102384-73102403 | MS.gene47714:CDS | 55.0% | |
| CACGTTTGGCTGAGGCACAG+TGG | - | chr5.3:73101538-73101557 | None:intergenic | 60.0% | |
| CGTTTGGCTGAGGCACAGTG+GGG | - | chr5.3:73101536-73101555 | None:intergenic | 60.0% | |
| GTGCCGTCAGCTAGTAGTGC+AGG | - | chr5.3:73102373-73102392 | None:intergenic | 60.0% | |
| TGCCTCAGCCAAACGTGTGC+TGG | + | chr5.3:73101541-73101560 | MS.gene47714:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 73101512 | 73102663 | 73101512 | ID=MS.gene47714 |
| chr5.3 | mRNA | 73101512 | 73102663 | 73101512 | ID=MS.gene47714.t1;Parent=MS.gene47714 |
| chr5.3 | exon | 73101512 | 73101655 | 73101512 | ID=MS.gene47714.t1.exon1;Parent=MS.gene47714.t1 |
| chr5.3 | CDS | 73101512 | 73101655 | 73101512 | ID=cds.MS.gene47714.t1;Parent=MS.gene47714.t1 |
| chr5.3 | exon | 73101775 | 73101823 | 73101775 | ID=MS.gene47714.t1.exon2;Parent=MS.gene47714.t1 |
| chr5.3 | CDS | 73101775 | 73101823 | 73101775 | ID=cds.MS.gene47714.t1;Parent=MS.gene47714.t1 |
| chr5.3 | exon | 73102206 | 73102663 | 73102206 | ID=MS.gene47714.t1.exon3;Parent=MS.gene47714.t1 |
| chr5.3 | CDS | 73102206 | 73102663 | 73102206 | ID=cds.MS.gene47714.t1;Parent=MS.gene47714.t1 |
| Gene Sequence |
| Protein sequence |
