Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22196.t1 | XP_013459651.1 | 100 | 215 | 0 | 0 | 1 | 215 | 1 | 215 | 1.60E-121 | 445.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22196.t1 | O80852 | 61.7 | 214 | 82 | 0 | 1 | 214 | 1 | 214 | 2.5e-78 | 293.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22196.t1 | A0A072UVM3 | 100.0 | 215 | 0 | 0 | 1 | 215 | 1 | 215 | 1.2e-121 | 445.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22196 | MS.gene049706 | PPI |
| MS.gene22196 | MS.gene05016 | PPI |
| MS.gene22196 | MS.gene048703 | PPI |
| MS.gene04976 | MS.gene22196 | PPI |
| MS.gene22196 | MS.gene69499 | PPI |
| MS.gene038277 | MS.gene22196 | PPI |
| MS.gene22196 | MS.gene48032 | PPI |
| MS.gene008334 | MS.gene22196 | PPI |
| MS.gene22196 | MS.gene69505 | PPI |
| MS.gene22196 | MS.gene017062 | PPI |
| MS.gene22196 | MS.gene07192 | PPI |
| MS.gene019181 | MS.gene22196 | PPI |
| MS.gene008337 | MS.gene22196 | PPI |
| MS.gene20711 | MS.gene22196 | PPI |
| MS.gene008278 | MS.gene22196 | PPI |
| MS.gene061566 | MS.gene22196 | PPI |
| MS.gene22196 | MS.gene048797 | PPI |
| MS.gene017060 | MS.gene22196 | PPI |
| MS.gene019183 | MS.gene22196 | PPI |
| MS.gene22195 | MS.gene22196 | PPI |
| MS.gene22196 | MS.gene049699 | PPI |
| MS.gene03034 | MS.gene22196 | PPI |
| MS.gene22196 | MS.gene22188 | PPI |
| MS.gene048743 | MS.gene22196 | PPI |
| MS.gene22188 | MS.gene22196 | PPI |
| MS.gene000510 | MS.gene22196 | PPI |
| MS.gene47714 | MS.gene22196 | PPI |
| MS.gene22196 | MS.gene83384 | PPI |
| MS.gene22196 | MS.gene72151 | PPI |
| MS.gene030405 | MS.gene22196 | PPI |
| MS.gene005621 | MS.gene22196 | PPI |
| MS.gene22196 | MS.gene48030 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22196.t1 | MTR_3g450790 | 100.000 | 215 | 0 | 0 | 1 | 215 | 1 | 215 | 2.61e-159 | 439 |
| MS.gene22196.t1 | MTR_3g450930 | 77.674 | 215 | 48 | 0 | 1 | 215 | 1 | 215 | 5.07e-128 | 360 |
| MS.gene22196.t1 | MTR_5g090920 | 71.429 | 217 | 59 | 2 | 1 | 215 | 1 | 216 | 5.51e-111 | 317 |
| MS.gene22196.t1 | MTR_5g090910 | 68.519 | 216 | 67 | 1 | 1 | 215 | 1 | 216 | 2.23e-108 | 310 |
| MS.gene22196.t1 | MTR_3g064700 | 57.746 | 213 | 89 | 1 | 1 | 212 | 1 | 213 | 7.59e-87 | 255 |
| MS.gene22196.t1 | MTR_5g090910 | 69.079 | 152 | 46 | 1 | 65 | 215 | 8 | 159 | 1.74e-72 | 217 |
| MS.gene22196.t1 | MTR_1g088850 | 49.048 | 210 | 104 | 3 | 1 | 208 | 1 | 209 | 9.37e-70 | 212 |
| MS.gene22196.t1 | MTR_1g026140 | 48.624 | 218 | 106 | 3 | 3 | 214 | 5 | 222 | 2.07e-68 | 209 |
| MS.gene22196.t1 | MTR_1g088840 | 42.381 | 210 | 119 | 2 | 2 | 210 | 3 | 211 | 7.93e-57 | 179 |
| MS.gene22196.t1 | MTR_1g088825 | 42.381 | 210 | 119 | 2 | 2 | 210 | 3 | 211 | 7.93e-57 | 179 |
| MS.gene22196.t1 | MTR_1g088845 | 42.381 | 210 | 119 | 2 | 2 | 210 | 3 | 211 | 2.47e-54 | 173 |
| MS.gene22196.t1 | MTR_1g088840 | 43.293 | 164 | 92 | 1 | 47 | 210 | 2 | 164 | 8.07e-44 | 144 |
| MS.gene22196.t1 | MTR_1g088840 | 45.133 | 113 | 61 | 1 | 98 | 210 | 4 | 115 | 1.86e-27 | 101 |
| MS.gene22196.t1 | MTR_8g098420 | 30.994 | 171 | 114 | 3 | 1 | 167 | 1 | 171 | 3.46e-19 | 82.0 |
| MS.gene22196.t1 | MTR_8g098420 | 29.897 | 194 | 125 | 4 | 1 | 190 | 1 | 187 | 7.00e-19 | 82.4 |
| MS.gene22196.t1 | MTR_1g492670 | 46.970 | 66 | 34 | 1 | 145 | 210 | 2 | 66 | 9.68e-14 | 64.3 |
| MS.gene22196.t1 | MTR_4g134370 | 32.258 | 155 | 96 | 4 | 15 | 166 | 29 | 177 | 4.50e-13 | 66.2 |
| MS.gene22196.t1 | MTR_8g098430 | 25.926 | 216 | 146 | 7 | 3 | 207 | 5 | 217 | 1.40e-12 | 65.1 |
| MS.gene22196.t1 | MTR_2g005570 | 25.714 | 175 | 113 | 4 | 39 | 208 | 42 | 204 | 4.68e-12 | 64.7 |
| MS.gene22196.t1 | MTR_2g005570 | 25.556 | 180 | 107 | 5 | 39 | 208 | 42 | 204 | 6.91e-12 | 64.3 |
| MS.gene22196.t1 | MTR_4g134770 | 25.287 | 174 | 116 | 4 | 39 | 208 | 5 | 168 | 1.07e-11 | 63.5 |
| MS.gene22196.t1 | MTR_4g134770 | 25.287 | 174 | 116 | 4 | 39 | 208 | 40 | 203 | 1.09e-11 | 63.5 |
| MS.gene22196.t1 | MTR_4g134380 | 29.747 | 158 | 96 | 5 | 15 | 166 | 29 | 177 | 1.24e-11 | 62.4 |
| MS.gene22196.t1 | MTR_4g134380 | 29.801 | 151 | 91 | 5 | 15 | 159 | 29 | 170 | 5.39e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22196.t1 | AT2G30860 | 61.682 | 214 | 82 | 0 | 1 | 214 | 1 | 214 | 3.61e-100 | 289 |
| MS.gene22196.t1 | AT2G30870 | 59.070 | 215 | 88 | 0 | 1 | 215 | 1 | 215 | 6.12e-98 | 284 |
| MS.gene22196.t1 | AT3G03190 | 51.869 | 214 | 102 | 1 | 1 | 213 | 1 | 214 | 3.15e-77 | 231 |
| MS.gene22196.t1 | AT2G30860 | 61.039 | 154 | 60 | 0 | 1 | 154 | 1 | 154 | 4.38e-67 | 204 |
| MS.gene22196.t1 | AT5G17220 | 47.393 | 211 | 110 | 1 | 1 | 210 | 1 | 211 | 6.14e-67 | 205 |
| MS.gene22196.t1 | AT3G62760 | 47.368 | 209 | 107 | 3 | 1 | 207 | 1 | 208 | 2.46e-65 | 201 |
| MS.gene22196.t1 | AT1G02930 | 44.444 | 207 | 112 | 3 | 3 | 208 | 4 | 208 | 8.83e-55 | 174 |
| MS.gene22196.t1 | AT1G02930 | 44.444 | 207 | 112 | 3 | 3 | 208 | 4 | 208 | 8.83e-55 | 174 |
| MS.gene22196.t1 | AT2G47730 | 42.857 | 210 | 117 | 3 | 5 | 212 | 54 | 262 | 5.51e-54 | 174 |
| MS.gene22196.t1 | AT2G47730 | 42.857 | 210 | 117 | 3 | 5 | 212 | 54 | 262 | 5.51e-54 | 174 |
| MS.gene22196.t1 | AT1G02920 | 44.928 | 207 | 112 | 2 | 3 | 208 | 4 | 209 | 2.13e-53 | 171 |
| MS.gene22196.t1 | AT2G02930 | 43.810 | 210 | 113 | 3 | 3 | 208 | 4 | 212 | 2.02e-52 | 168 |
| MS.gene22196.t1 | AT1G49860 | 42.365 | 203 | 114 | 2 | 16 | 215 | 19 | 221 | 8.87e-52 | 168 |
| MS.gene22196.t1 | AT4G02520 | 42.105 | 209 | 116 | 3 | 3 | 207 | 4 | 211 | 9.45e-52 | 166 |
| MS.gene22196.t1 | AT1G02950 | 40.686 | 204 | 118 | 3 | 4 | 205 | 38 | 240 | 3.31e-47 | 156 |
| MS.gene22196.t1 | AT1G02950 | 40.686 | 204 | 118 | 3 | 4 | 205 | 26 | 228 | 3.35e-47 | 155 |
| MS.gene22196.t1 | AT1G02950 | 40.686 | 204 | 118 | 3 | 4 | 205 | 26 | 228 | 3.35e-47 | 155 |
| MS.gene22196.t1 | AT1G02950 | 40.686 | 204 | 118 | 3 | 4 | 205 | 28 | 230 | 3.47e-47 | 155 |
| MS.gene22196.t1 | AT1G02940 | 37.799 | 209 | 127 | 3 | 4 | 210 | 40 | 247 | 9.55e-46 | 152 |
| MS.gene22196.t1 | AT1G02940 | 37.799 | 209 | 127 | 3 | 4 | 210 | 40 | 247 | 9.55e-46 | 152 |
| MS.gene22196.t1 | AT1G02940 | 37.799 | 209 | 127 | 3 | 4 | 210 | 65 | 272 | 1.29e-45 | 153 |
| MS.gene22196.t1 | AT1G02940 | 37.799 | 209 | 127 | 3 | 4 | 210 | 53 | 260 | 1.34e-45 | 152 |
| MS.gene22196.t1 | AT1G02950 | 37.241 | 145 | 89 | 2 | 62 | 205 | 59 | 202 | 8.19e-27 | 102 |
| MS.gene22196.t1 | AT5G41240 | 28.500 | 200 | 137 | 3 | 1 | 194 | 1 | 200 | 5.09e-16 | 76.6 |
| MS.gene22196.t1 | AT5G41210 | 26.601 | 203 | 143 | 4 | 1 | 197 | 2 | 204 | 4.66e-15 | 72.0 |
| MS.gene22196.t1 | AT1G09640 | 26.705 | 176 | 121 | 3 | 39 | 213 | 40 | 208 | 4.14e-14 | 69.7 |
| MS.gene22196.t1 | AT5G41220 | 27.500 | 200 | 139 | 3 | 1 | 194 | 1 | 200 | 5.92e-14 | 70.5 |
| MS.gene22196.t1 | AT1G09640 | 27.485 | 171 | 116 | 3 | 39 | 208 | 40 | 203 | 6.37e-14 | 70.1 |
| MS.gene22196.t1 | AT1G57720 | 27.746 | 173 | 113 | 4 | 39 | 208 | 40 | 203 | 8.10e-13 | 67.0 |
| MS.gene22196.t1 | AT1G57720 | 27.746 | 173 | 113 | 4 | 39 | 208 | 40 | 203 | 8.10e-13 | 67.0 |
Find 56 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTTCTGTTTGCACCATTA+AGG | 0.174996 | 3.4:-40693270 | MS.gene22196:CDS |
| TCAAACTGGGAGAGGAAATT+TGG | 0.210954 | 3.4:-40693086 | MS.gene22196:CDS |
| TCTTGCATTTGGTCACTATT+TGG | 0.246792 | 3.4:-40693113 | MS.gene22196:CDS |
| CAGCCTATGGTTCTCCAAAA+AGG | 0.287014 | 3.4:-40694587 | MS.gene22196:CDS |
| AACCTGCAGTTTAAGAAAAT+CGG | 0.287618 | 3.4:+40694485 | None:intergenic |
| TCACCGGGAACACCCCTTAA+TGG | 0.320635 | 3.4:+40693256 | None:intergenic |
| CACTATTTGGTGAATCAAAC+TGG | 0.321868 | 3.4:-40693100 | MS.gene22196:CDS |
| GATCTTAGCCATCTTGCATT+TGG | 0.333958 | 3.4:-40693124 | MS.gene22196:CDS |
| AACATGGTTGTGAAAGTTTA+CGG | 0.352941 | 3.4:-40694612 | MS.gene22196:CDS |
| GATGGTGATTATACCCTCTA+TGG | 0.366109 | 3.4:-40694342 | MS.gene22196:intron |
| TGTTCTGTTTGCACCATTAA+GGG | 0.377609 | 3.4:-40693269 | MS.gene22196:CDS |
| AACCAAGGAACCGATTTGTT+AGG | 0.406691 | 3.4:-40693382 | MS.gene22196:CDS |
| GCCATCTTGGAAGAAGGTTC+TGG | 0.407675 | 3.4:-40693014 | MS.gene22196:CDS |
| GCACCATTAAGGGGTGTTCC+CGG | 0.409259 | 3.4:-40693259 | MS.gene22196:CDS |
| TACTGTCTTTCCTAACAAAT+CGG | 0.410470 | 3.4:+40693372 | None:intergenic |
| TTCCTAACAAATCGGTTCCT+TGG | 0.418961 | 3.4:+40693380 | None:intergenic |
| ACCTGCAGTTTAAGAAAATC+GGG | 0.455251 | 3.4:+40694486 | None:intergenic |
| ATGACCAAGCTGTAGATTGC+TGG | 0.457280 | 3.4:+40693295 | None:intergenic |
| TGTTGATATTGATCTCTTCA+AGG | 0.461501 | 3.4:-40694523 | MS.gene22196:CDS |
| AGGAAAGACAGTAGAAGAAA+GGG | 0.463386 | 3.4:-40693362 | MS.gene22196:CDS |
| TAGGAAAGACAGTAGAAGAA+AGG | 0.466401 | 3.4:-40693363 | MS.gene22196:CDS |
| GAAATCACCAGCCAAGTACT+TGG | 0.494773 | 3.4:+40693159 | None:intergenic |
| TCCAGAACCTTCTTCCAAGA+TGG | 0.501349 | 3.4:+40693013 | None:intergenic |
| ATATTAGTAGCAGGCCATCT+TGG | 0.502723 | 3.4:-40693027 | MS.gene22196:CDS |
| TATATAAATACCCTGTGTAA+TGG | 0.503081 | 3.4:-40692988 | None:intergenic |
| AAAGTTTACGGACCAGCCTA+TGG | 0.503832 | 3.4:-40694600 | MS.gene22196:CDS |
| GAGGAAATTTGGTTAGAGAG+AGG | 0.505432 | 3.4:-40693075 | MS.gene22196:CDS |
| GAGGTTCCTCTTGTTCAAGA+TGG | 0.514108 | 3.4:-40694360 | MS.gene22196:CDS |
| GCTCTCAAAGACCAAGTACT+TGG | 0.516432 | 3.4:-40693170 | MS.gene22196:CDS |
| TAGCAGGCCATCTTGGAAGA+AGG | 0.522731 | 3.4:-40693020 | MS.gene22196:CDS |
| ACAAGAGGAACCTCTCCAAA+AGG | 0.531793 | 3.4:+40694369 | None:intergenic |
| TCAAAGACCAAGTACTTGGC+TGG | 0.541866 | 3.4:-40693166 | MS.gene22196:CDS |
| TGAAAAGCTGAAGAAAGTGT+TGG | 0.542428 | 3.4:-40693209 | MS.gene22196:CDS |
| GTTGATATTGATCTCTTCAA+GGG | 0.544872 | 3.4:-40694522 | MS.gene22196:CDS |
| TTGGTGAATCAAACTGGGAG+AGG | 0.560271 | 3.4:-40693094 | MS.gene22196:CDS |
| GATGAGGTGGCTAACCATAG+AGG | 0.560604 | 3.4:+40694328 | None:intergenic |
| CACAAACAAAACCATTACAC+AGG | 0.565632 | 3.4:+40692977 | None:intergenic |
| TGTTGGATATTTACGAGGAG+AGG | 0.570899 | 3.4:-40693192 | MS.gene22196:CDS |
| GGTGGGATGATATTAGTAGC+AGG | 0.571858 | 3.4:-40693036 | MS.gene22196:CDS |
| TAATCACCATCTTGAACAAG+AGG | 0.579904 | 3.4:+40694354 | None:intergenic |
| TCACCCAGCAATCTACAGCT+TGG | 0.583361 | 3.4:-40693299 | MS.gene22196:CDS |
| ATGAGGTGGCTAACCATAGA+GGG | 0.590026 | 3.4:+40694329 | None:intergenic |
| AATAGTGACCAAATGCAAGA+TGG | 0.590599 | 3.4:+40693116 | None:intergenic |
| GTTCTGTTTGCACCATTAAG+GGG | 0.593368 | 3.4:-40693268 | MS.gene22196:CDS |
| AAAGGGGACTTGTGGAACAA+TGG | 0.610264 | 3.4:-40693345 | MS.gene22196:CDS |
| GAAACATGTGAGTGCATGGT+GGG | 0.618318 | 3.4:-40693053 | MS.gene22196:CDS |
| AGTAGAAGAAAGGGGACTTG+TGG | 0.620270 | 3.4:-40693353 | MS.gene22196:CDS |
| TGACCAAGCTGTAGATTGCT+GGG | 0.623969 | 3.4:+40693296 | None:intergenic |
| TGTGGAACAATGGCTTGAAG+TGG | 0.629943 | 3.4:-40693335 | MS.gene22196:CDS |
| AGAGGAAACATGTGAGTGCA+TGG | 0.644423 | 3.4:-40693057 | MS.gene22196:CDS |
| GGAAAGACAGTAGAAGAAAG+GGG | 0.650622 | 3.4:-40693361 | MS.gene22196:CDS |
| ACTATTTGGTGAATCAAACT+GGG | 0.660675 | 3.4:-40693099 | MS.gene22196:CDS |
| GAAAGTGTTGGATATTTACG+AGG | 0.675286 | 3.4:-40693197 | MS.gene22196:CDS |
| GCAGAAAAGTACAAGAACCA+AGG | 0.682353 | 3.4:-40693397 | MS.gene22196:CDS |
| ACAAACAAAACCATTACACA+GGG | 0.696248 | 3.4:+40692978 | None:intergenic |
| GGAAACATGTGAGTGCATGG+TGG | 0.712862 | 3.4:-40693054 | MS.gene22196:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAACAGCAATTTATT+CGG | - | chr3.4:40693652-40693671 | MS.gene22196:intron | 15.0% |
| !!! | ATTAAGTTGAATAAAATTGA+AGG | + | chr3.4:40693160-40693179 | None:intergenic | 15.0% |
| !!! | GTTTATAAACATTTTTGAAA+AGG | + | chr3.4:40693832-40693851 | None:intergenic | 15.0% |
| !!! | TTGGATTATATTTTAAACTT+TGG | - | chr3.4:40693352-40693371 | MS.gene22196:CDS | 15.0% |
| !! | AAACTTTCTCAATACATTAA+GGG | - | chr3.4:40693848-40693867 | MS.gene22196:intron | 20.0% |
| !! | GAATAATCTATTCATACTAA+TGG | - | chr3.4:40694130-40694149 | MS.gene22196:intron | 20.0% |
| !! | TAAACTTTCTCAATACATTA+AGG | - | chr3.4:40693847-40693866 | MS.gene22196:intron | 20.0% |
| !!! | AATAACATAAGCAGTAATTT+TGG | + | chr3.4:40693898-40693917 | None:intergenic | 20.0% |
| !!! | ATATTTTAAACTTTGGATCA+GGG | - | chr3.4:40693359-40693378 | MS.gene22196:CDS | 20.0% |
| !!! | TATATTTTAAACTTTGGATC+AGG | - | chr3.4:40693358-40693377 | MS.gene22196:CDS | 20.0% |
| !!! | TTTGCTTTAAAATTTGCATT+GGG | + | chr3.4:40694011-40694030 | None:intergenic | 20.0% |
| !!! | TTTTGCTTTAAAATTTGCAT+TGG | + | chr3.4:40694012-40694031 | None:intergenic | 20.0% |
| ! | AAACATATATTGTGTGTGTT+TGG | - | chr3.4:40693946-40693965 | MS.gene22196:intron | 25.0% |
| ! | AGATAATGATTGTTTAAGCT+AGG | + | chr3.4:40693535-40693554 | None:intergenic | 25.0% |
| ! | AGCTTAAACAATCATTATCT+AGG | - | chr3.4:40693535-40693554 | MS.gene22196:intron | 25.0% |
| !! | GGTCTTATGTTAGTAATTTA+TGG | + | chr3.4:40693811-40693830 | None:intergenic | 25.0% |
| !!! | AAACGAATTTTTCAGAATCT+CGG | - | chr3.4:40694162-40694181 | MS.gene22196:intron | 25.0% |
| AAAACACATGAATCAGGATA+AGG | + | chr3.4:40693443-40693462 | None:intergenic | 30.0% | |
| AAACACATGAATCAGGATAA+GGG | + | chr3.4:40693442-40693461 | None:intergenic | 30.0% | |
| AACACATTTCAAGCATAATC+AGG | + | chr3.4:40693729-40693748 | None:intergenic | 30.0% | |
| AACCTGCAGTTTAAGAAAAT+CGG | + | chr3.4:40693118-40693137 | None:intergenic | 30.0% | |
| AAGCTACAATTAGTAGAGTT+TGG | + | chr3.4:40694036-40694055 | None:intergenic | 30.0% | |
| ATGTCTACTACTTGTCAATT+TGG | - | chr3.4:40693784-40693803 | MS.gene22196:intron | 30.0% | |
| ATTAAGGGACTATAGTAACA+CGG | - | chr3.4:40693863-40693882 | MS.gene22196:intron | 30.0% | |
| GAAAATAGTAAATGATGAGG+TGG | + | chr3.4:40693288-40693307 | None:intergenic | 30.0% | |
| GAAATGACAATTAACGTGTT+TGG | + | chr3.4:40694096-40694115 | None:intergenic | 30.0% | |
| GCAGAAAATAGTAAATGATG+AGG | + | chr3.4:40693291-40693310 | None:intergenic | 30.0% | |
| GCTGAAAATATAACAGACAT+AGG | + | chr3.4:40693212-40693231 | None:intergenic | 30.0% | |
| GTCATTTCTATCTGTTAATG+TGG | - | chr3.4:40694108-40694127 | MS.gene22196:intron | 30.0% | |
| GTTGATATTGATCTCTTCAA+GGG | - | chr3.4:40693078-40693097 | MS.gene22196:CDS | 30.0% | |
| TACTGTCTTTCCTAACAAAT+CGG | + | chr3.4:40694231-40694250 | None:intergenic | 30.0% | |
| TCTAGGCTTAATTTATCTCT+CGG | - | chr3.4:40693552-40693571 | MS.gene22196:intron | 30.0% | |
| TGGTTAATCATCTTCACTTA+AGG | - | chr3.4:40693478-40693497 | MS.gene22196:intron | 30.0% | |
| TGTTGATATTGATCTCTTCA+AGG | - | chr3.4:40693077-40693096 | MS.gene22196:CDS | 30.0% | |
| ! | ACAAGTAGTAGACATTTTCA+AGG | + | chr3.4:40693779-40693798 | None:intergenic | 30.0% |
| ! | ACTATTTGGTGAATCAAACT+GGG | - | chr3.4:40694501-40694520 | MS.gene22196:CDS | 30.0% |
| ! | CTGTTATATTTTCAGCCTTT+TGG | - | chr3.4:40693216-40693235 | MS.gene22196:CDS | 30.0% |
| !! | AACGAATTTTTCAGAATCTC+GGG | - | chr3.4:40694163-40694182 | MS.gene22196:intron | 30.0% |
| !!! | CTGATTCATGTGTTTTTAGA+GGG | - | chr3.4:40693447-40693466 | MS.gene22196:intron | 30.0% |
| AATAGTGACCAAATGCAAGA+TGG | + | chr3.4:40694487-40694506 | None:intergenic | 35.0% | |
| ACCTGCAGTTTAAGAAAATC+GGG | + | chr3.4:40693117-40693136 | None:intergenic | 35.0% | |
| ACTATAGTAACACGGCTTTA+GGG | - | chr3.4:40693871-40693890 | MS.gene22196:intron | 35.0% | |
| AGGAAAGACAGTAGAAGAAA+GGG | - | chr3.4:40694238-40694257 | MS.gene22196:intron | 35.0% | |
| ATGTTCTGTTTGCACCATTA+AGG | - | chr3.4:40694330-40694349 | MS.gene22196:intron | 35.0% | |
| TAATCACCATCTTGAACAAG+AGG | + | chr3.4:40693249-40693268 | None:intergenic | 35.0% | |
| TAGGAAAGACAGTAGAAGAA+AGG | - | chr3.4:40694237-40694256 | MS.gene22196:intron | 35.0% | |
| TCTTGCATTTGGTCACTATT+TGG | - | chr3.4:40694487-40694506 | MS.gene22196:intron | 35.0% | |
| TGGTGGGATTGAAAAAAACT+CGG | + | chr3.4:40694068-40694087 | None:intergenic | 35.0% | |
| TGTTCTGTTTGCACCATTAA+GGG | - | chr3.4:40694331-40694350 | MS.gene22196:intron | 35.0% | |
| ! | CACTATTTGGTGAATCAAAC+TGG | - | chr3.4:40694500-40694519 | MS.gene22196:CDS | 35.0% |
| ! | CAGGGTGTTACATTTAATTG+AGG | - | chr3.4:40693377-40693396 | MS.gene22196:CDS | 35.0% |
| ! | CCTCTAAAAACACATGAATC+AGG | + | chr3.4:40693449-40693468 | None:intergenic | 35.0% |
| ! | CTGATTGGTGATTTACTGAT+TGG | - | chr3.4:40693333-40693352 | MS.gene22196:CDS | 35.0% |
| ! | TGAAAAGCTGAAGAAAGTGT+TGG | - | chr3.4:40694391-40694410 | MS.gene22196:intron | 35.0% |
| !! | AATTAACGTGTTTGGTGTAC+TGG | + | chr3.4:40694088-40694107 | None:intergenic | 35.0% |
| !! | ATATTTTCAGCCTTTTGGAG+AGG | - | chr3.4:40693221-40693240 | MS.gene22196:CDS | 35.0% |
| !! | GAAAGTGTTGGATATTTACG+AGG | - | chr3.4:40694403-40694422 | MS.gene22196:intron | 35.0% |
| !! | GTTGGTATGTCTTTTTGAGA+AGG | - | chr3.4:40693038-40693057 | MS.gene22196:CDS | 35.0% |
| !! | GTTTTTAGAGGGTAATCAAG+TGG | - | chr3.4:40693458-40693477 | MS.gene22196:intron | 35.0% |
| !!! | CCTGATTCATGTGTTTTTAG+AGG | - | chr3.4:40693446-40693465 | MS.gene22196:intron | 35.0% |
| !!! | TTCAATTGCTTTTTGGTCAC+CGG | + | chr3.4:40694363-40694382 | None:intergenic | 35.0% |
| AGCCTATGGTTCTCCAAAAA+GGG | - | chr3.4:40693014-40693033 | MS.gene22196:CDS | 40.0% | |
| ATATTAGTAGCAGGCCATCT+TGG | - | chr3.4:40694573-40694592 | MS.gene22196:CDS | 40.0% | |
| ATGTGTTTCAGCGTGATTCT+TGG | + | chr3.4:40693986-40694005 | None:intergenic | 40.0% | |
| GACTATAGTAACACGGCTTT+AGG | - | chr3.4:40693870-40693889 | MS.gene22196:intron | 40.0% | |
| GAGGAAATTTGGTTAGAGAG+AGG | - | chr3.4:40694525-40694544 | MS.gene22196:CDS | 40.0% | |
| GATCTTAGCCATCTTGCATT+TGG | - | chr3.4:40694476-40694495 | MS.gene22196:intron | 40.0% | |
| GATGGTGATTATACCCTCTA+TGG | - | chr3.4:40693258-40693277 | MS.gene22196:CDS | 40.0% | |
| GGAAAGACAGTAGAAGAAAG+GGG | - | chr3.4:40694239-40694258 | MS.gene22196:intron | 40.0% | |
| GGCTGAACTTAGAATTACCA+AGG | - | chr3.4:40693573-40693592 | MS.gene22196:intron | 40.0% | |
| GTTCTGTTTGCACCATTAAG+GGG | - | chr3.4:40694332-40694351 | MS.gene22196:intron | 40.0% | |
| TCAAACTGGGAGAGGAAATT+TGG | - | chr3.4:40694514-40694533 | MS.gene22196:CDS | 40.0% | |
| TGTGCTGTGTAGTTACTGAT+TGG | - | chr3.4:40693318-40693337 | MS.gene22196:CDS | 40.0% | |
| TGTTGGATATTTACGAGGAG+AGG | - | chr3.4:40694408-40694427 | MS.gene22196:intron | 40.0% | |
| ! | ACCCGATTTTCTTAAACTGC+AGG | - | chr3.4:40693113-40693132 | MS.gene22196:CDS | 40.0% |
| ! | AGACATACCAACACCCTTTT+TGG | + | chr3.4:40693030-40693049 | None:intergenic | 40.0% |
| ! | GCAGAAAAGTACAAGAACCA+AGG | - | chr3.4:40694203-40694222 | MS.gene22196:intron | 40.0% |
| ! | TTCCTAACAAATCGGTTCCT+TGG | + | chr3.4:40694223-40694242 | None:intergenic | 40.0% |
| !! | AACCAAGGAACCGATTTGTT+AGG | - | chr3.4:40694218-40694237 | MS.gene22196:intron | 40.0% |
| !! | CGCTCTCTTCAATTGCTTTT+TGG | + | chr3.4:40694370-40694389 | None:intergenic | 40.0% |
| !! | GGTATGTCTTTTTGAGAAGG+AGG | - | chr3.4:40693041-40693060 | MS.gene22196:CDS | 40.0% |
| !!! | TCAATTGCTTTTTGGTCACC+GGG | + | chr3.4:40694362-40694381 | None:intergenic | 40.0% |
| AAAGGGGACTTGTGGAACAA+TGG | - | chr3.4:40694255-40694274 | MS.gene22196:intron | 45.0% | |
| AAAGTTTACGGACCAGCCTA+TGG | - | chr3.4:40693000-40693019 | MS.gene22196:CDS | 45.0% | |
| ACAAGAGGAACCTCTCCAAA+AGG | + | chr3.4:40693234-40693253 | None:intergenic | 45.0% | |
| AGAGGAAACATGTGAGTGCA+TGG | - | chr3.4:40694543-40694562 | MS.gene22196:CDS | 45.0% | |
| AGTAGAAGAAAGGGGACTTG+TGG | - | chr3.4:40694247-40694266 | MS.gene22196:intron | 45.0% | |
| ATGACCAAGCTGTAGATTGC+TGG | + | chr3.4:40694308-40694327 | None:intergenic | 45.0% | |
| ATGAGGTGGCTAACCATAGA+GGG | + | chr3.4:40693274-40693293 | None:intergenic | 45.0% | |
| CAGCCTATGGTTCTCCAAAA+AGG | - | chr3.4:40693013-40693032 | MS.gene22196:CDS | 45.0% | |
| GAAACATGTGAGTGCATGGT+GGG | - | chr3.4:40694547-40694566 | MS.gene22196:CDS | 45.0% | |
| GAAATCACCAGCCAAGTACT+TGG | + | chr3.4:40694444-40694463 | None:intergenic | 45.0% | |
| GAGGTTCCTCTTGTTCAAGA+TGG | - | chr3.4:40693240-40693259 | MS.gene22196:CDS | 45.0% | |
| GCTCTCAAAGACCAAGTACT+TGG | - | chr3.4:40694430-40694449 | MS.gene22196:intron | 45.0% | |
| GGTGGGATGATATTAGTAGC+AGG | - | chr3.4:40694564-40694583 | MS.gene22196:CDS | 45.0% | |
| TCAAAGACCAAGTACTTGGC+TGG | - | chr3.4:40694434-40694453 | MS.gene22196:intron | 45.0% | |
| TCCAGAACCTTCTTCCAAGA+TGG | + | chr3.4:40694590-40694609 | None:intergenic | 45.0% | |
| TGACCAAGCTGTAGATTGCT+GGG | + | chr3.4:40694307-40694326 | None:intergenic | 45.0% | |
| TGTGGAACAATGGCTTGAAG+TGG | - | chr3.4:40694265-40694284 | MS.gene22196:intron | 45.0% | |
| TTATAACCCTCTCGTTCCCA+TGG | + | chr3.4:40693606-40693625 | None:intergenic | 45.0% | |
| TTGGTGAATCAAACTGGGAG+AGG | - | chr3.4:40694506-40694525 | MS.gene22196:CDS | 45.0% | |
| ! | TGGTTCTCCAAAAAGGGTGT+TGG | - | chr3.4:40693020-40693039 | MS.gene22196:CDS | 45.0% |
| !! | AACGTGTTTGGTGTACTGGT+GGG | + | chr3.4:40694084-40694103 | None:intergenic | 45.0% |
| !! | CACCCTTTTTGGAGAACCAT+AGG | + | chr3.4:40693019-40693038 | None:intergenic | 45.0% |
| !! | CTTTTTGGAGAACCATAGGC+TGG | + | chr3.4:40693015-40693034 | None:intergenic | 45.0% |
| !! | TAACGTGTTTGGTGTACTGG+TGG | + | chr3.4:40694085-40694104 | None:intergenic | 45.0% |
| AGGGAAGCAAAGATGCATGC+AGG | + | chr3.4:40693423-40693442 | None:intergenic | 50.0% | |
| GATGAGGTGGCTAACCATAG+AGG | + | chr3.4:40693275-40693294 | None:intergenic | 50.0% | |
| GCCATCTTGGAAGAAGGTTC+TGG | - | chr3.4:40694586-40694605 | MS.gene22196:CDS | 50.0% | |
| GGAAACATGTGAGTGCATGG+TGG | - | chr3.4:40694546-40694565 | MS.gene22196:CDS | 50.0% | |
| GGGAAGCAAAGATGCATGCA+GGG | + | chr3.4:40693422-40693441 | None:intergenic | 50.0% | |
| TAGCAGGCCATCTTGGAAGA+AGG | - | chr3.4:40694580-40694599 | MS.gene22196:CDS | 50.0% | |
| TCACCCAGCAATCTACAGCT+TGG | - | chr3.4:40694301-40694320 | MS.gene22196:intron | 50.0% | |
| ! | ATTACCAAGGCCGCTTTCCA+TGG | - | chr3.4:40693586-40693605 | MS.gene22196:intron | 50.0% |
| ! | TTACCAAGGCCGCTTTCCAT+GGG | - | chr3.4:40693587-40693606 | MS.gene22196:intron | 50.0% |
| CCTCTCGTTCCCATGGAAAG+CGG | + | chr3.4:40693599-40693618 | None:intergenic | 55.0% | |
| CGCTTTCCATGGGAACGAGA+GGG | - | chr3.4:40693597-40693616 | MS.gene22196:intron | 55.0% | |
| TCACCGGGAACACCCCTTAA+TGG | + | chr3.4:40694347-40694366 | None:intergenic | 55.0% | |
| !! | GCACCATTAAGGGGTGTTCC+CGG | - | chr3.4:40694341-40694360 | MS.gene22196:intron | 55.0% |
| CCGCTTTCCATGGGAACGAG+AGG | - | chr3.4:40693596-40693615 | MS.gene22196:intron | 60.0% | |
| GTTCCCATGGAAAGCGGCCT+TGG | + | chr3.4:40693593-40693612 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 40692991 | 40694631 | 40692991 | ID=MS.gene22196 |
| chr3.4 | mRNA | 40692991 | 40694631 | 40692991 | ID=MS.gene22196.t1;Parent=MS.gene22196 |
| chr3.4 | exon | 40694488 | 40694631 | 40694488 | ID=MS.gene22196.t1.exon1;Parent=MS.gene22196.t1 |
| chr3.4 | CDS | 40694488 | 40694631 | 40694488 | ID=cds.MS.gene22196.t1;Parent=MS.gene22196.t1 |
| chr3.4 | exon | 40694343 | 40694391 | 40694343 | ID=MS.gene22196.t1.exon2;Parent=MS.gene22196.t1 |
| chr3.4 | CDS | 40694343 | 40694391 | 40694343 | ID=cds.MS.gene22196.t1;Parent=MS.gene22196.t1 |
| chr3.4 | exon | 40692991 | 40693445 | 40692991 | ID=MS.gene22196.t1.exon3;Parent=MS.gene22196.t1 |
| chr3.4 | CDS | 40692991 | 40693445 | 40692991 | ID=cds.MS.gene22196.t1;Parent=MS.gene22196.t1 |
| Gene Sequence |
| Protein sequence |
