Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000510.t1 | XP_013459651.1 | 99.5 | 215 | 1 | 0 | 1 | 215 | 1 | 215 | 4.80E-121 | 443.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000510.t1 | O80852 | 61.7 | 214 | 82 | 0 | 1 | 214 | 1 | 214 | 3.3e-78 | 292.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000510.t1 | A0A072UVM3 | 99.5 | 215 | 1 | 0 | 1 | 215 | 1 | 215 | 3.4e-121 | 443.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene000510 | MS.gene22188 | PPI |
| MS.gene000510 | MS.gene008334 | PPI |
| MS.gene000510 | MS.gene048703 | PPI |
| MS.gene000510 | MS.gene83384 | PPI |
| MS.gene000510 | MS.gene72151 | PPI |
| MS.gene000510 | MS.gene47714 | PPI |
| MS.gene000510 | MS.gene048743 | PPI |
| MS.gene000510 | MS.gene48032 | PPI |
| MS.gene000510 | MS.gene038277 | PPI |
| MS.gene000510 | MS.gene017062 | PPI |
| MS.gene000510 | MS.gene05016 | PPI |
| MS.gene000510 | MS.gene03034 | PPI |
| MS.gene000510 | MS.gene22195 | PPI |
| MS.gene000510 | MS.gene69499 | PPI |
| MS.gene000510 | MS.gene030405 | PPI |
| MS.gene000510 | MS.gene69505 | PPI |
| MS.gene000510 | MS.gene008337 | PPI |
| MS.gene000510 | MS.gene04976 | PPI |
| MS.gene000510 | MS.gene017060 | PPI |
| MS.gene000510 | MS.gene07192 | PPI |
| MS.gene000510 | MS.gene019181 | PPI |
| MS.gene000510 | MS.gene061566 | PPI |
| MS.gene000510 | MS.gene049699 | PPI |
| MS.gene000510 | MS.gene008278 | PPI |
| MS.gene000510 | MS.gene20711 | PPI |
| MS.gene000510 | MS.gene005621 | PPI |
| MS.gene000510 | MS.gene048797 | PPI |
| MS.gene000510 | MS.gene22196 | PPI |
| MS.gene000510 | MS.gene48030 | PPI |
| MS.gene000510 | MS.gene019183 | PPI |
| MS.gene000510 | MS.gene049706 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000510.t1 | MTR_3g450790 | 99.535 | 215 | 1 | 0 | 1 | 215 | 1 | 215 | 9.53e-159 | 437 |
| MS.gene000510.t1 | MTR_3g450930 | 77.674 | 215 | 48 | 0 | 1 | 215 | 1 | 215 | 4.54e-128 | 360 |
| MS.gene000510.t1 | MTR_5g090920 | 71.429 | 217 | 59 | 2 | 1 | 215 | 1 | 216 | 3.96e-111 | 317 |
| MS.gene000510.t1 | MTR_5g090910 | 68.519 | 216 | 67 | 1 | 1 | 215 | 1 | 216 | 2.46e-108 | 310 |
| MS.gene000510.t1 | MTR_3g064700 | 57.746 | 213 | 89 | 1 | 1 | 212 | 1 | 213 | 8.56e-87 | 255 |
| MS.gene000510.t1 | MTR_5g090910 | 69.079 | 152 | 46 | 1 | 65 | 215 | 8 | 159 | 1.98e-72 | 217 |
| MS.gene000510.t1 | MTR_1g088850 | 49.048 | 210 | 104 | 3 | 1 | 208 | 1 | 209 | 1.01e-69 | 212 |
| MS.gene000510.t1 | MTR_1g026140 | 48.624 | 218 | 106 | 3 | 3 | 214 | 5 | 222 | 2.16e-68 | 209 |
| MS.gene000510.t1 | MTR_1g088840 | 42.381 | 210 | 119 | 2 | 2 | 210 | 3 | 211 | 1.06e-56 | 179 |
| MS.gene000510.t1 | MTR_1g088825 | 42.381 | 210 | 119 | 2 | 2 | 210 | 3 | 211 | 1.06e-56 | 179 |
| MS.gene000510.t1 | MTR_1g088845 | 42.381 | 210 | 119 | 2 | 2 | 210 | 3 | 211 | 2.97e-54 | 172 |
| MS.gene000510.t1 | MTR_1g088840 | 43.293 | 164 | 92 | 1 | 47 | 210 | 2 | 164 | 1.08e-43 | 144 |
| MS.gene000510.t1 | MTR_1g088840 | 45.133 | 113 | 61 | 1 | 98 | 210 | 4 | 115 | 2.44e-27 | 100 |
| MS.gene000510.t1 | MTR_8g098420 | 30.994 | 171 | 114 | 3 | 1 | 167 | 1 | 171 | 3.88e-19 | 81.6 |
| MS.gene000510.t1 | MTR_8g098420 | 29.897 | 194 | 125 | 4 | 1 | 190 | 1 | 187 | 7.84e-19 | 82.4 |
| MS.gene000510.t1 | MTR_1g492670 | 46.970 | 66 | 34 | 1 | 145 | 210 | 2 | 66 | 9.28e-14 | 64.3 |
| MS.gene000510.t1 | MTR_4g134370 | 32.258 | 155 | 96 | 4 | 15 | 166 | 29 | 177 | 3.57e-13 | 66.6 |
| MS.gene000510.t1 | MTR_8g098430 | 25.926 | 216 | 146 | 7 | 3 | 207 | 5 | 217 | 1.58e-12 | 65.1 |
| MS.gene000510.t1 | MTR_2g005570 | 26.111 | 180 | 106 | 5 | 39 | 208 | 42 | 204 | 3.36e-12 | 65.1 |
| MS.gene000510.t1 | MTR_2g005570 | 25.714 | 175 | 113 | 4 | 39 | 208 | 42 | 204 | 5.30e-12 | 64.7 |
| MS.gene000510.t1 | MTR_4g134380 | 29.747 | 158 | 96 | 5 | 15 | 166 | 29 | 177 | 9.75e-12 | 62.4 |
| MS.gene000510.t1 | MTR_4g134770 | 25.287 | 174 | 116 | 4 | 39 | 208 | 5 | 168 | 1.04e-11 | 63.5 |
| MS.gene000510.t1 | MTR_4g134770 | 25.287 | 174 | 116 | 4 | 39 | 208 | 40 | 203 | 1.04e-11 | 63.5 |
| MS.gene000510.t1 | MTR_4g134380 | 29.801 | 151 | 91 | 5 | 15 | 159 | 29 | 170 | 4.88e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000510.t1 | AT2G30860 | 61.682 | 214 | 82 | 0 | 1 | 214 | 1 | 214 | 3.65e-100 | 289 |
| MS.gene000510.t1 | AT2G30870 | 59.070 | 215 | 88 | 0 | 1 | 215 | 1 | 215 | 7.13e-98 | 283 |
| MS.gene000510.t1 | AT3G03190 | 51.869 | 214 | 102 | 1 | 1 | 213 | 1 | 214 | 2.73e-77 | 231 |
| MS.gene000510.t1 | AT2G30860 | 61.039 | 154 | 60 | 0 | 1 | 154 | 1 | 154 | 5.58e-67 | 203 |
| MS.gene000510.t1 | AT5G17220 | 47.393 | 211 | 110 | 1 | 1 | 210 | 1 | 211 | 6.56e-67 | 205 |
| MS.gene000510.t1 | AT3G62760 | 47.368 | 209 | 107 | 3 | 1 | 207 | 1 | 208 | 2.28e-65 | 201 |
| MS.gene000510.t1 | AT1G02930 | 44.444 | 207 | 112 | 3 | 3 | 208 | 4 | 208 | 1.01e-54 | 174 |
| MS.gene000510.t1 | AT1G02930 | 44.444 | 207 | 112 | 3 | 3 | 208 | 4 | 208 | 1.01e-54 | 174 |
| MS.gene000510.t1 | AT2G47730 | 42.857 | 210 | 117 | 3 | 5 | 212 | 54 | 262 | 7.07e-54 | 173 |
| MS.gene000510.t1 | AT2G47730 | 42.857 | 210 | 117 | 3 | 5 | 212 | 54 | 262 | 7.07e-54 | 173 |
| MS.gene000510.t1 | AT1G02920 | 44.928 | 207 | 112 | 2 | 3 | 208 | 4 | 209 | 2.85e-53 | 170 |
| MS.gene000510.t1 | AT2G02930 | 43.810 | 210 | 113 | 3 | 3 | 208 | 4 | 212 | 2.07e-52 | 168 |
| MS.gene000510.t1 | AT1G49860 | 42.365 | 203 | 114 | 2 | 16 | 215 | 19 | 221 | 9.07e-52 | 168 |
| MS.gene000510.t1 | AT4G02520 | 42.105 | 209 | 116 | 3 | 3 | 207 | 4 | 211 | 1.05e-51 | 166 |
| MS.gene000510.t1 | AT1G02950 | 40.686 | 204 | 118 | 3 | 4 | 205 | 26 | 228 | 3.39e-47 | 155 |
| MS.gene000510.t1 | AT1G02950 | 40.686 | 204 | 118 | 3 | 4 | 205 | 26 | 228 | 3.39e-47 | 155 |
| MS.gene000510.t1 | AT1G02950 | 40.686 | 204 | 118 | 3 | 4 | 205 | 28 | 230 | 3.43e-47 | 155 |
| MS.gene000510.t1 | AT1G02950 | 40.686 | 204 | 118 | 3 | 4 | 205 | 38 | 240 | 3.85e-47 | 156 |
| MS.gene000510.t1 | AT1G02940 | 37.799 | 209 | 127 | 3 | 4 | 210 | 40 | 247 | 9.45e-46 | 152 |
| MS.gene000510.t1 | AT1G02940 | 37.799 | 209 | 127 | 3 | 4 | 210 | 40 | 247 | 9.45e-46 | 152 |
| MS.gene000510.t1 | AT1G02940 | 37.799 | 209 | 127 | 3 | 4 | 210 | 53 | 260 | 1.24e-45 | 152 |
| MS.gene000510.t1 | AT1G02940 | 37.799 | 209 | 127 | 3 | 4 | 210 | 65 | 272 | 1.37e-45 | 152 |
| MS.gene000510.t1 | AT1G02950 | 37.241 | 145 | 89 | 2 | 62 | 205 | 59 | 202 | 8.92e-27 | 102 |
| MS.gene000510.t1 | AT5G41240 | 28.500 | 200 | 137 | 3 | 1 | 194 | 1 | 200 | 6.39e-16 | 76.3 |
| MS.gene000510.t1 | AT5G41210 | 26.601 | 203 | 143 | 4 | 1 | 197 | 2 | 204 | 5.59e-15 | 71.6 |
| MS.gene000510.t1 | AT1G09640 | 27.374 | 179 | 120 | 4 | 39 | 214 | 40 | 211 | 4.35e-14 | 69.7 |
| MS.gene000510.t1 | AT1G09640 | 27.485 | 171 | 116 | 3 | 39 | 208 | 40 | 203 | 6.68e-14 | 70.1 |
| MS.gene000510.t1 | AT5G41220 | 27.500 | 200 | 139 | 3 | 1 | 194 | 1 | 200 | 7.23e-14 | 70.1 |
| MS.gene000510.t1 | AT1G57720 | 27.746 | 173 | 113 | 4 | 39 | 208 | 40 | 203 | 8.82e-13 | 67.0 |
| MS.gene000510.t1 | AT1G57720 | 27.746 | 173 | 113 | 4 | 39 | 208 | 40 | 203 | 8.82e-13 | 67.0 |
Find 53 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCTGTTTGCACCGTTAA+AGG | 0.197508 | 3.2:-38218782 | MS.gene000510:CDS |
| TCAAACTGGGAGAGGAAATT+TGG | 0.210954 | 3.2:-38218599 | MS.gene000510:CDS |
| TCTTGCATTTGGTCACTATT+TGG | 0.246792 | 3.2:-38218626 | MS.gene000510:CDS |
| CAGCCTATGGTTCTCCAAAA+AGG | 0.287014 | 3.2:-38219921 | MS.gene000510:CDS |
| CACTATTTGGTGAATCAAAC+TGG | 0.321868 | 3.2:-38218613 | MS.gene000510:CDS |
| GATCTTAGCCATCTTGCATT+TGG | 0.333958 | 3.2:-38218637 | MS.gene000510:CDS |
| AACATGGTTGTGAAAGTTTA+CGG | 0.352941 | 3.2:-38219946 | MS.gene000510:CDS |
| GATGGTGATTATACCCTCTA+TGG | 0.366109 | 3.2:-38219676 | MS.gene000510:intron |
| GCACCGTTAAAGGGTGTTCC+CGG | 0.396288 | 3.2:-38218772 | MS.gene000510:CDS |
| AACCTGCAGTTTGAGAAAAT+CGG | 0.405623 | 3.2:+38219819 | None:intergenic |
| AACCAAGGAACCGATTTGTT+AGG | 0.406691 | 3.2:-38218895 | MS.gene000510:CDS |
| TACTGTCTTTCCTAACAAAT+CGG | 0.410470 | 3.2:+38218885 | None:intergenic |
| TTCCTAACAAATCGGTTCCT+TGG | 0.418961 | 3.2:+38218893 | None:intergenic |
| TCACCGGGAACACCCTTTAA+CGG | 0.425189 | 3.2:+38218769 | None:intergenic |
| GTTCTGTTTGCACCGTTAAA+GGG | 0.425408 | 3.2:-38218781 | MS.gene000510:CDS |
| ACCTGCAGTTTGAGAAAATC+GGG | 0.447227 | 3.2:+38219820 | None:intergenic |
| ATGACCAAGCTGTAGATTGC+TGG | 0.457280 | 3.2:+38218808 | None:intergenic |
| TGTTGATATTGATCTCTTCA+AGG | 0.461501 | 3.2:-38219857 | MS.gene000510:CDS |
| AGGAAAGACAGTAGAAGAAA+GGG | 0.463386 | 3.2:-38218875 | MS.gene000510:CDS |
| TAGGAAAGACAGTAGAAGAA+AGG | 0.466401 | 3.2:-38218876 | MS.gene000510:CDS |
| ATATTAGTAGCAGGCCATCT+TGG | 0.502723 | 3.2:-38218540 | MS.gene000510:CDS |
| TATATAAATACCCTGTGTAA+TGG | 0.503081 | 3.2:-38218501 | None:intergenic |
| AAAGTTTACGGACCAGCCTA+TGG | 0.503832 | 3.2:-38219934 | MS.gene000510:CDS |
| GAGGAAATTTGGTTAGAGAG+AGG | 0.505432 | 3.2:-38218588 | MS.gene000510:CDS |
| TCAAGAACCTTCTTCCAAGA+TGG | 0.510216 | 3.2:+38218526 | None:intergenic |
| GAGGTTCCTCTTGTTCAAGA+TGG | 0.514108 | 3.2:-38219694 | MS.gene000510:CDS |
| TAGCAGGCCATCTTGGAAGA+AGG | 0.522731 | 3.2:-38218533 | MS.gene000510:CDS |
| ACAAGAGGAACCTCTCCAAA+AGG | 0.531793 | 3.2:+38219703 | None:intergenic |
| TCAAAGACAAAGTACTTGGC+TGG | 0.539946 | 3.2:-38218679 | MS.gene000510:CDS |
| GTTGATATTGATCTCTTCAA+GGG | 0.544872 | 3.2:-38219856 | MS.gene000510:CDS |
| GCTCTCAAAGACAAAGTACT+TGG | 0.547162 | 3.2:-38218683 | MS.gene000510:CDS |
| TTGGTGAATCAAACTGGGAG+AGG | 0.560271 | 3.2:-38218607 | MS.gene000510:CDS |
| CACAAACAAAACCATTACAC+AGG | 0.565632 | 3.2:+38218490 | None:intergenic |
| TGTTGGATATTTACGAGGAG+AGG | 0.570899 | 3.2:-38218705 | MS.gene000510:CDS |
| GGTGGGATGATATTAGTAGC+AGG | 0.571858 | 3.2:-38218549 | MS.gene000510:CDS |
| TGAAAAGCTGAAGAAAGTGT+TGG | 0.579668 | 3.2:-38218722 | MS.gene000510:CDS |
| TAATCACCATCTTGAACAAG+AGG | 0.579904 | 3.2:+38219688 | None:intergenic |
| TCACCCAGCAATCTACAGCT+TGG | 0.583361 | 3.2:-38218812 | MS.gene000510:CDS |
| AATAGTGACCAAATGCAAGA+TGG | 0.590599 | 3.2:+38218629 | None:intergenic |
| GATGAGGTGGATAACCATAG+AGG | 0.593796 | 3.2:+38219662 | None:intergenic |
| AAAGGGGACTTGTGGAACAA+TGG | 0.610264 | 3.2:-38218858 | MS.gene000510:CDS |
| GAAACATGTGAGTGCATGGT+GGG | 0.618318 | 3.2:-38218566 | MS.gene000510:CDS |
| AGTAGAAGAAAGGGGACTTG+TGG | 0.620270 | 3.2:-38218866 | MS.gene000510:CDS |
| TGACCAAGCTGTAGATTGCT+GGG | 0.623969 | 3.2:+38218809 | None:intergenic |
| TGTGGAACAATGGCTTGAAG+TGG | 0.629943 | 3.2:-38218848 | MS.gene000510:CDS |
| ATGAGGTGGATAACCATAGA+GGG | 0.635503 | 3.2:+38219663 | None:intergenic |
| AGAGGAAACATGTGAGTGCA+TGG | 0.644423 | 3.2:-38218570 | MS.gene000510:CDS |
| GGAAAGACAGTAGAAGAAAG+GGG | 0.650622 | 3.2:-38218874 | MS.gene000510:CDS |
| ACTATTTGGTGAATCAAACT+GGG | 0.660675 | 3.2:-38218612 | MS.gene000510:CDS |
| GAAAGTGTTGGATATTTACG+AGG | 0.675286 | 3.2:-38218710 | MS.gene000510:CDS |
| GCAGAAAAGTACAAGAACCA+AGG | 0.682353 | 3.2:-38218910 | MS.gene000510:CDS |
| ACAAACAAAACCATTACACA+GGG | 0.696248 | 3.2:+38218491 | None:intergenic |
| GGAAACATGTGAGTGCATGG+TGG | 0.712862 | 3.2:-38218567 | MS.gene000510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAAATAAGCAGTAATTT+TGG | + | chr3.2:38219413-38219432 | None:intergenic | 15.0% |
| !!! | ATTAAGTTGAATAAAATTGA+AGG | + | chr3.2:38218673-38218692 | None:intergenic | 15.0% |
| !!! | GTTTATAAACATTTTTGAAA+AGG | + | chr3.2:38219347-38219366 | None:intergenic | 15.0% |
| !!! | TTGGATTATATTTTAAACTT+TGG | - | chr3.2:38218866-38218885 | MS.gene000510:CDS | 15.0% |
| !! | AAAATTGCAGAAAATAGTAA+AGG | + | chr3.2:38218811-38218830 | None:intergenic | 20.0% |
| !! | AAACTTTCTCAATACATTAA+GGG | - | chr3.2:38219363-38219382 | MS.gene000510:intron | 20.0% |
| !! | AAATTGCAGAAAATAGTAAA+GGG | + | chr3.2:38218810-38218829 | None:intergenic | 20.0% |
| !! | GAATAATCTATTCATACTAA+TGG | - | chr3.2:38219464-38219483 | MS.gene000510:intron | 20.0% |
| !! | TAAACTTTCTCAATACATTA+AGG | - | chr3.2:38219362-38219381 | MS.gene000510:intron | 20.0% |
| !!! | AAAATAAACAGCAATTTGTT+CGG | - | chr3.2:38219167-38219186 | MS.gene000510:intron | 20.0% |
| !!! | ATATTTTAAACTTTGGATCA+GGG | - | chr3.2:38218873-38218892 | MS.gene000510:CDS | 20.0% |
| !!! | TATATTTTAAACTTTGGATC+AGG | - | chr3.2:38218872-38218891 | MS.gene000510:CDS | 20.0% |
| ! | AAAAAGTGATTCTGTTAATG+TGG | - | chr3.2:38219442-38219461 | MS.gene000510:intron | 25.0% |
| ! | AGATAATGATTGTTTAAGCT+AGG | + | chr3.2:38219050-38219069 | None:intergenic | 25.0% |
| ! | AGCTTAAACAATCATTATCT+AGG | - | chr3.2:38219050-38219069 | MS.gene000510:intron | 25.0% |
| !! | GGTCTTATGTTAGTAATTTA+TGG | + | chr3.2:38219326-38219345 | None:intergenic | 25.0% |
| !!! | AAACGAATTTTTCAGAATCT+CGG | - | chr3.2:38219496-38219515 | MS.gene000510:intron | 25.0% |
| AACACATTTCAAGCATAATC+AGG | + | chr3.2:38219244-38219263 | None:intergenic | 30.0% | |
| ATGTCTACTACTTGTCTATT+TGG | - | chr3.2:38219299-38219318 | MS.gene000510:intron | 30.0% | |
| ATTAAGGGACTATAGTAACA+CGG | - | chr3.2:38219378-38219397 | MS.gene000510:intron | 30.0% | |
| GCTGAAAATATAACAGACAT+AGG | + | chr3.2:38218725-38218744 | None:intergenic | 30.0% | |
| GTTGATATTGATCTCTTCAA+GGG | - | chr3.2:38218591-38218610 | MS.gene000510:CDS | 30.0% | |
| TACTGTCTTTCCTAACAAAT+CGG | + | chr3.2:38219565-38219584 | None:intergenic | 30.0% | |
| TCTAGGCTTAATTTATCTCT+CGG | - | chr3.2:38219067-38219086 | MS.gene000510:intron | 30.0% | |
| TGGTTAATCATCTTCACTTA+AGG | - | chr3.2:38218993-38219012 | MS.gene000510:intron | 30.0% | |
| TGTTGATATTGATCTCTTCA+AGG | - | chr3.2:38218590-38218609 | MS.gene000510:CDS | 30.0% | |
| ! | ACAAGTAGTAGACATTTTCA+AGG | + | chr3.2:38219294-38219313 | None:intergenic | 30.0% |
| ! | ACTATTTGGTGAATCAAACT+GGG | - | chr3.2:38219835-38219854 | MS.gene000510:CDS | 30.0% |
| ! | CTGTTATATTTTCAGCCTTT+TGG | - | chr3.2:38218729-38218748 | MS.gene000510:CDS | 30.0% |
| !! | AACGAATTTTTCAGAATCTC+GGG | - | chr3.2:38219497-38219516 | MS.gene000510:intron | 30.0% |
| !!! | CTGATTCATGTGTTTTTAGA+GGG | - | chr3.2:38218962-38218981 | MS.gene000510:intron | 30.0% |
| AAAATAGTAAAGGGATGAGG+TGG | + | chr3.2:38218801-38218820 | None:intergenic | 35.0% | |
| AAACACATGAATCAGGATAC+AGG | + | chr3.2:38218957-38218976 | None:intergenic | 35.0% | |
| AACACATGAATCAGGATACA+GGG | + | chr3.2:38218956-38218975 | None:intergenic | 35.0% | |
| AACCTGCAGTTTGAGAAAAT+CGG | + | chr3.2:38218631-38218650 | None:intergenic | 35.0% | |
| AATAGTGACCAAATGCAAGA+TGG | + | chr3.2:38219821-38219840 | None:intergenic | 35.0% | |
| ACTATAGTAACACGGCTTTA+GGG | - | chr3.2:38219386-38219405 | MS.gene000510:intron | 35.0% | |
| AGGAAAGACAGTAGAAGAAA+GGG | - | chr3.2:38219572-38219591 | MS.gene000510:intron | 35.0% | |
| CAGAAAATAGTAAAGGGATG+AGG | + | chr3.2:38218804-38218823 | None:intergenic | 35.0% | |
| TAATCACCATCTTGAACAAG+AGG | + | chr3.2:38218762-38218781 | None:intergenic | 35.0% | |
| TAGGAAAGACAGTAGAAGAA+AGG | - | chr3.2:38219571-38219590 | MS.gene000510:intron | 35.0% | |
| TCTTGCATTTGGTCACTATT+TGG | - | chr3.2:38219821-38219840 | MS.gene000510:intron | 35.0% | |
| ! | CACTATTTGGTGAATCAAAC+TGG | - | chr3.2:38219834-38219853 | MS.gene000510:CDS | 35.0% |
| ! | CAGGGTGTTACATTTAATTG+AGG | - | chr3.2:38218891-38218910 | MS.gene000510:CDS | 35.0% |
| ! | CCTCTAAAAACACATGAATC+AGG | + | chr3.2:38218964-38218983 | None:intergenic | 35.0% |
| ! | CTGATTGGTGATTTACTGAT+TGG | - | chr3.2:38218847-38218866 | MS.gene000510:CDS | 35.0% |
| ! | TGAAAAGCTGAAGAAAGTGT+TGG | - | chr3.2:38219725-38219744 | MS.gene000510:intron | 35.0% |
| !! | ATATTTTCAGCCTTTTGGAG+AGG | - | chr3.2:38218734-38218753 | MS.gene000510:CDS | 35.0% |
| !! | GAAAGTGTTGGATATTTACG+AGG | - | chr3.2:38219737-38219756 | MS.gene000510:intron | 35.0% |
| !! | GTTGGTATGTCTTTTTGAGA+AGG | - | chr3.2:38218551-38218570 | MS.gene000510:CDS | 35.0% |
| !! | GTTTTTAGAGGGTAATCAAG+TGG | - | chr3.2:38218973-38218992 | MS.gene000510:intron | 35.0% |
| !!! | CCTGATTCATGTGTTTTTAG+AGG | - | chr3.2:38218961-38218980 | MS.gene000510:intron | 35.0% |
| ACCTGCAGTTTGAGAAAATC+GGG | + | chr3.2:38218630-38218649 | None:intergenic | 40.0% | |
| AGCCTATGGTTCTCCAAAAA+GGG | - | chr3.2:38218527-38218546 | MS.gene000510:CDS | 40.0% | |
| ATATTAGTAGCAGGCCATCT+TGG | - | chr3.2:38219907-38219926 | MS.gene000510:CDS | 40.0% | |
| ATGAGGTGGATAACCATAGA+GGG | + | chr3.2:38218787-38218806 | None:intergenic | 40.0% | |
| GACTATAGTAACACGGCTTT+AGG | - | chr3.2:38219385-38219404 | MS.gene000510:intron | 40.0% | |
| GAGGAAATTTGGTTAGAGAG+AGG | - | chr3.2:38219859-38219878 | MS.gene000510:CDS | 40.0% | |
| GATCTTAGCCATCTTGCATT+TGG | - | chr3.2:38219810-38219829 | MS.gene000510:intron | 40.0% | |
| GATGGTGATTATACCCTCTA+TGG | - | chr3.2:38218771-38218790 | MS.gene000510:CDS | 40.0% | |
| GGAAAGACAGTAGAAGAAAG+GGG | - | chr3.2:38219573-38219592 | MS.gene000510:intron | 40.0% | |
| GGCTGAACTTAGAATTACCA+AGG | - | chr3.2:38219088-38219107 | MS.gene000510:intron | 40.0% | |
| GTTCTGTTTGCACCGTTAAA+GGG | - | chr3.2:38219666-38219685 | MS.gene000510:intron | 40.0% | |
| TCAAACTGGGAGAGGAAATT+TGG | - | chr3.2:38219848-38219867 | MS.gene000510:CDS | 40.0% | |
| TCAAGAACCTTCTTCCAAGA+TGG | + | chr3.2:38219924-38219943 | None:intergenic | 40.0% | |
| TGTGCTGTGTAGTTACTGAT+TGG | - | chr3.2:38218832-38218851 | MS.gene000510:CDS | 40.0% | |
| TGTTCTGTTTGCACCGTTAA+AGG | - | chr3.2:38219665-38219684 | MS.gene000510:intron | 40.0% | |
| TGTTGGATATTTACGAGGAG+AGG | - | chr3.2:38219742-38219761 | MS.gene000510:intron | 40.0% | |
| ! | AGACATACCAACACCCTTTT+TGG | + | chr3.2:38218543-38218562 | None:intergenic | 40.0% |
| ! | GCAGAAAAGTACAAGAACCA+AGG | - | chr3.2:38219537-38219556 | MS.gene000510:intron | 40.0% |
| ! | GCTCTCAAAGACAAAGTACT+TGG | - | chr3.2:38219764-38219783 | MS.gene000510:intron | 40.0% |
| ! | TCAAAGACAAAGTACTTGGC+TGG | - | chr3.2:38219768-38219787 | MS.gene000510:intron | 40.0% |
| ! | TTCCTAACAAATCGGTTCCT+TGG | + | chr3.2:38219557-38219576 | None:intergenic | 40.0% |
| !! | AACCAAGGAACCGATTTGTT+AGG | - | chr3.2:38219552-38219571 | MS.gene000510:intron | 40.0% |
| !! | CACTCTCTTCAATCGCTTTT+TGG | + | chr3.2:38219704-38219723 | None:intergenic | 40.0% |
| !! | GGTATGTCTTTTTGAGAAGG+AGG | - | chr3.2:38218554-38218573 | MS.gene000510:CDS | 40.0% |
| !!! | TTCAATCGCTTTTTGGTCAC+CGG | + | chr3.2:38219697-38219716 | None:intergenic | 40.0% |
| AAAGGGGACTTGTGGAACAA+TGG | - | chr3.2:38219589-38219608 | MS.gene000510:intron | 45.0% | |
| AAAGTTTACGGACCAGCCTA+TGG | - | chr3.2:38218513-38218532 | MS.gene000510:CDS | 45.0% | |
| ACAAGAGGAACCTCTCCAAA+AGG | + | chr3.2:38218747-38218766 | None:intergenic | 45.0% | |
| AGAGGAAACATGTGAGTGCA+TGG | - | chr3.2:38219877-38219896 | MS.gene000510:CDS | 45.0% | |
| AGTAGAAGAAAGGGGACTTG+TGG | - | chr3.2:38219581-38219600 | MS.gene000510:intron | 45.0% | |
| ATGACCAAGCTGTAGATTGC+TGG | + | chr3.2:38219642-38219661 | None:intergenic | 45.0% | |
| CAGCCTATGGTTCTCCAAAA+AGG | - | chr3.2:38218526-38218545 | MS.gene000510:CDS | 45.0% | |
| GAAACATGTGAGTGCATGGT+GGG | - | chr3.2:38219881-38219900 | MS.gene000510:CDS | 45.0% | |
| GAGGTTCCTCTTGTTCAAGA+TGG | - | chr3.2:38218753-38218772 | MS.gene000510:CDS | 45.0% | |
| GATGAGGTGGATAACCATAG+AGG | + | chr3.2:38218788-38218807 | None:intergenic | 45.0% | |
| GGTGGGATGATATTAGTAGC+AGG | - | chr3.2:38219898-38219917 | MS.gene000510:CDS | 45.0% | |
| TGACCAAGCTGTAGATTGCT+GGG | + | chr3.2:38219641-38219660 | None:intergenic | 45.0% | |
| TGTGGAACAATGGCTTGAAG+TGG | - | chr3.2:38219599-38219618 | MS.gene000510:intron | 45.0% | |
| TTATAACCCTCTCGTTCCCA+TGG | + | chr3.2:38219121-38219140 | None:intergenic | 45.0% | |
| TTGGTGAATCAAACTGGGAG+AGG | - | chr3.2:38219840-38219859 | MS.gene000510:CDS | 45.0% | |
| ! | ACCCGATTTTCTCAAACTGC+AGG | - | chr3.2:38218626-38218645 | MS.gene000510:CDS | 45.0% |
| ! | TGGTTCTCCAAAAAGGGTGT+TGG | - | chr3.2:38218533-38218552 | MS.gene000510:CDS | 45.0% |
| !! | CACCCTTTTTGGAGAACCAT+AGG | + | chr3.2:38218532-38218551 | None:intergenic | 45.0% |
| !! | CTTTTTGGAGAACCATAGGC+TGG | + | chr3.2:38218528-38218547 | None:intergenic | 45.0% |
| !!! | TCAATCGCTTTTTGGTCACC+GGG | + | chr3.2:38219696-38219715 | None:intergenic | 45.0% |
| AGGGAAGCAAAGATGCATGC+AGG | + | chr3.2:38218937-38218956 | None:intergenic | 50.0% | |
| GGAAACATGTGAGTGCATGG+TGG | - | chr3.2:38219880-38219899 | MS.gene000510:CDS | 50.0% | |
| GGGAAGCAAAGATGCATGCA+GGG | + | chr3.2:38218936-38218955 | None:intergenic | 50.0% | |
| TAGCAGGCCATCTTGGAAGA+AGG | - | chr3.2:38219914-38219933 | MS.gene000510:CDS | 50.0% | |
| TCACCCAGCAATCTACAGCT+TGG | - | chr3.2:38219635-38219654 | MS.gene000510:intron | 50.0% | |
| TCACCGGGAACACCCTTTAA+CGG | + | chr3.2:38219681-38219700 | None:intergenic | 50.0% | |
| ! | ATTACCAAGGCCGCTTTCCA+TGG | - | chr3.2:38219101-38219120 | MS.gene000510:intron | 50.0% |
| ! | TTACCAAGGCCGCTTTCCAT+GGG | - | chr3.2:38219102-38219121 | MS.gene000510:intron | 50.0% |
| CCTCTCGTTCCCATGGAAAG+CGG | + | chr3.2:38219114-38219133 | None:intergenic | 55.0% | |
| CGCTTTCCATGGGAACGAGA+GGG | - | chr3.2:38219112-38219131 | MS.gene000510:intron | 55.0% | |
| !! | GCACCGTTAAAGGGTGTTCC+CGG | - | chr3.2:38219675-38219694 | MS.gene000510:intron | 55.0% |
| CCGCTTTCCATGGGAACGAG+AGG | - | chr3.2:38219111-38219130 | MS.gene000510:intron | 60.0% | |
| GTTCCCATGGAAAGCGGCCT+TGG | + | chr3.2:38219108-38219127 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 38218504 | 38219965 | 38218504 | ID=MS.gene000510 |
| chr3.2 | mRNA | 38218504 | 38219965 | 38218504 | ID=MS.gene000510.t1;Parent=MS.gene000510 |
| chr3.2 | exon | 38219822 | 38219965 | 38219822 | ID=MS.gene000510.t1.exon1;Parent=MS.gene000510.t1 |
| chr3.2 | CDS | 38219822 | 38219965 | 38219822 | ID=cds.MS.gene000510.t1;Parent=MS.gene000510.t1 |
| chr3.2 | exon | 38219677 | 38219725 | 38219677 | ID=MS.gene000510.t1.exon2;Parent=MS.gene000510.t1 |
| chr3.2 | CDS | 38219677 | 38219725 | 38219677 | ID=cds.MS.gene000510.t1;Parent=MS.gene000510.t1 |
| chr3.2 | exon | 38218504 | 38218958 | 38218504 | ID=MS.gene000510.t1.exon3;Parent=MS.gene000510.t1 |
| chr3.2 | CDS | 38218504 | 38218958 | 38218504 | ID=cds.MS.gene000510.t1;Parent=MS.gene000510.t1 |
| Gene Sequence |
| Protein sequence |
