AlfalfaGEDB | MS.gene000510

M. sativa cultivar XinJiangDaYe / MS.gene000510

KEGG: K00799
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00043.28 PF02798.23

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000510.t1	XP_013459651.1	99.5	215	1	0	1	215	1	215	4.80E-121	443.7

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000510.t1	O80852	61.7	214	82	0	1	214	1	214	3.3e-78	292.7

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000510.t1	A0A072UVM3	99.5	215	1	0	1	215	1	215	3.4e-121	443.7

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene000510	MS.gene22188	PPI
MS.gene000510	MS.gene008334	PPI
MS.gene000510	MS.gene048703	PPI
MS.gene000510	MS.gene83384	PPI
MS.gene000510	MS.gene72151	PPI
MS.gene000510	MS.gene47714	PPI
MS.gene000510	MS.gene048743	PPI
MS.gene000510	MS.gene48032	PPI
MS.gene000510	MS.gene038277	PPI
MS.gene000510	MS.gene017062	PPI

Showing 1 to 10 of 31 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000510.t1	MTR_3g450790	99.535	215	1	0	1	215	1	215	9.53e-159	437
MS.gene000510.t1	MTR_3g450930	77.674	215	48	0	1	215	1	215	4.54e-128	360
MS.gene000510.t1	MTR_5g090920	71.429	217	59	2	1	215	1	216	3.96e-111	317
MS.gene000510.t1	MTR_5g090910	68.519	216	67	1	1	215	1	216	2.46e-108	310
MS.gene000510.t1	MTR_3g064700	57.746	213	89	1	1	212	1	213	8.56e-87	255
MS.gene000510.t1	MTR_5g090910	69.079	152	46	1	65	215	8	159	1.98e-72	217
MS.gene000510.t1	MTR_1g088850	49.048	210	104	3	1	208	1	209	1.01e-69	212
MS.gene000510.t1	MTR_1g026140	48.624	218	106	3	3	214	5	222	2.16e-68	209
MS.gene000510.t1	MTR_1g088840	42.381	210	119	2	2	210	3	211	1.06e-56	179
MS.gene000510.t1	MTR_1g088825	42.381	210	119	2	2	210	3	211	1.06e-56	179

Showing 1 to 10 of 24 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000510.t1	AT2G30860	61.682	214	82	0	1	214	1	214	3.65e-100	289
MS.gene000510.t1	AT2G30870	59.070	215	88	0	1	215	1	215	7.13e-98	283
MS.gene000510.t1	AT3G03190	51.869	214	102	1	1	213	1	214	2.73e-77	231
MS.gene000510.t1	AT2G30860	61.039	154	60	0	1	154	1	154	5.58e-67	203
MS.gene000510.t1	AT5G17220	47.393	211	110	1	1	210	1	211	6.56e-67	205
MS.gene000510.t1	AT3G62760	47.368	209	107	3	1	207	1	208	2.28e-65	201
MS.gene000510.t1	AT1G02930	44.444	207	112	3	3	208	4	208	1.01e-54	174
MS.gene000510.t1	AT1G02930	44.444	207	112	3	3	208	4	208	1.01e-54	174
MS.gene000510.t1	AT2G47730	42.857	210	117	3	5	212	54	262	7.07e-54	173
MS.gene000510.t1	AT2G47730	42.857	210	117	3	5	212	54	262	7.07e-54	173

Showing 1 to 10 of 30 entries

Previous1 2 3Next

Find 53 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGGACTTGTGGAACAA+TGG	0.610264	3.2:-38218858	MS.gene000510:CDS
AAAGTTTACGGACCAGCCTA+TGG	0.503832	3.2:-38219934	MS.gene000510:CDS
AACATGGTTGTGAAAGTTTA+CGG	0.352941	3.2:-38219946	MS.gene000510:CDS
AACCAAGGAACCGATTTGTT+AGG	0.406691	3.2:-38218895	MS.gene000510:CDS
AACCTGCAGTTTGAGAAAAT+CGG	0.405623	3.2:+38219819	None:intergenic
AATAGTGACCAAATGCAAGA+TGG	0.590599	3.2:+38218629	None:intergenic
ACAAACAAAACCATTACACA+GGG	0.696248	3.2:+38218491	None:intergenic
ACAAGAGGAACCTCTCCAAA+AGG	0.531793	3.2:+38219703	None:intergenic
ACCTGCAGTTTGAGAAAATC+GGG	0.447227	3.2:+38219820	None:intergenic
ACTATTTGGTGAATCAAACT+GGG	0.660675	3.2:-38218612	MS.gene000510:CDS

Showing 1 to 10 of 53 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACACATTTCAAGCATAATC+AGG	+	chr3.2:38219244-38219263	None:intergenic	30.0%
ATGTCTACTACTTGTCTATT+TGG	-	chr3.2:38219299-38219318	MS.gene000510:intron	30.0%
ATTAAGGGACTATAGTAACA+CGG	-	chr3.2:38219378-38219397	MS.gene000510:intron	30.0%
GCTGAAAATATAACAGACAT+AGG	+	chr3.2:38218725-38218744	None:intergenic	30.0%
GTTGATATTGATCTCTTCAA+GGG	-	chr3.2:38218591-38218610	MS.gene000510:CDS	30.0%
TACTGTCTTTCCTAACAAAT+CGG	+	chr3.2:38219565-38219584	None:intergenic	30.0%
TCTAGGCTTAATTTATCTCT+CGG	-	chr3.2:38219067-38219086	MS.gene000510:intron	30.0%
TGGTTAATCATCTTCACTTA+AGG	-	chr3.2:38218993-38219012	MS.gene000510:intron	30.0%
TGTTGATATTGATCTCTTCA+AGG	-	chr3.2:38218590-38218609	MS.gene000510:CDS	30.0%
AAAATAGTAAAGGGATGAGG+TGG	+	chr3.2:38218801-38218820	None:intergenic	35.0%

Showing 1 to 10 of 110 entries

Previous1 2 3 4 5…11Next

Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	38218504	38219965	38218504	ID=MS.gene000510
chr3.2	mRNA	38218504	38219965	38218504	ID=MS.gene000510.t1;Parent=MS.gene000510
chr3.2	exon	38219822	38219965	38219822	ID=MS.gene000510.t1.exon1;Parent=MS.gene000510.t1
chr3.2	CDS	38219822	38219965	38219822	ID=cds.MS.gene000510.t1;Parent=MS.gene000510.t1
chr3.2	exon	38219677	38219725	38219677	ID=MS.gene000510.t1.exon2;Parent=MS.gene000510.t1
chr3.2	CDS	38219677	38219725	38219677	ID=cds.MS.gene000510.t1;Parent=MS.gene000510.t1
chr3.2	exon	38218504	38218958	38218504	ID=MS.gene000510.t1.exon3;Parent=MS.gene000510.t1
chr3.2	CDS	38218504	38218958	38218504	ID=cds.MS.gene000510.t1;Parent=MS.gene000510.t1

Gene Sequence

>MS.gene000510

ATGGTTGTGAAAGTTTACGGACCAGCCTATGGTTCTCCAAAAAGGGTGTTGGTATGTCTTTTTGAGAAGGAGGTTGAGTTTGAAGCTGTTGATATTGATCTCTTCAAGGGAGAGCATAAACAACCCGATTTTCTCAAACTGCAGGTTCAATTTTTCTTCATTTTTTCCTTCAATTTTATTCAACTTAATCAATTATTTATTTTTCATGTGTAATTTTACCTATGTCTGTTATATTTTCAGCCTTTTGGAGAGGTTCCTCTTGTTCAAGATGGTGATTATACCCTCTATGGTTATCCACCTCATCCCTTTACTATTTTCTGCAATTTTTTGTGCTGTGTAGTTACTGATTGGTGATTTACTGATTGGATTATATTTTAAACTTTGGATCAGGGTGTTACATTTAATTGAGGTTAAAACTGTTTATATTTTCCCTGCATGCATCTTTGCTTCCCTGTATCCTGATTCATGTGTTTTTAGAGGGTAATCAAGTGGTTAATCATCTTCACTTAAGGTCAAATTGTTCTAGAGAAATCAAGTTTGAATCCTAGCTTAAACAATCATTATCTAGGCTTAATTTATCTCTCGGCTGAACTTAGAATTACCAAGGCCGCTTTCCATGGGAACGAGAGGGTTATAAATTACATATCACTCGATTTAATAGATAAAATAAACAGCAATTTGTTCGGTTCTGAGTGTATAAAAATTTGTCTAACATTTTCAAATCTGTCTTTTGATAGCCTGATTATGCTTGAAATGTGTTTTCTCTTAATTAACTGATTAATTTTGTCCTTGAAAATGTCTACTACTTGTCTATTTGGTCCATAAATTACTAACATAAGACCTTTTCAAAAATGTTTATAAACTTTCTCAATACATTAAGGGACTATAGTAACACGGCTTTAGGGACCAAAATTACTGCTTATTTTATTTTTGTCTTTAAAAAGTGATTCTGTTAATGTGGAATAATCTATTCATACTAATGGACTAATTTTAAACGAATTTTTCAGAATCTCGGGCAATAATCAGATACTATGCAGAAAAGTACAAGAACCAAGGAACCGATTTGTTAGGAAAGACAGTAGAAGAAAGGGGACTTGTGGAACAATGGCTTGAAGTGGAAGCACATAACTTTCACCCAGCAATCTACAGCTTGGTCATCAATGTTCTGTTTGCACCGTTAAAGGGTGTTCCCGGTGACCAAAAAGCGATTGAAGAGAGTGATGAAAAGCTGAAGAAAGTGTTGGATATTTACGAGGAGAGGCTCTCAAAGACAAAGTACTTGGCTGGCGATTTCTTTAGTCTTGCTGATCTTAGCCATCTTGCATTTGGTCACTATTTGGTGAATCAAACTGGGAGAGGAAATTTGGTTAGAGAGAGGAAACATGTGAGTGCATGGTGGGATGATATTAGTAGCAGGCCATCTTGGAAGAAGGTTCTTGAACTATATAAATACCCTGTGTAA

Protein sequence

>MS.gene000510.t1

MVVKVYGPAYGSPKRVLVCLFEKEVEFEAVDIDLFKGEHKQPDFLKLQPFGEVPLVQDGDYTLYESRAIIRYYAEKYKNQGTDLLGKTVEERGLVEQWLEVEAHNFHPAIYSLVINVLFAPLKGVPGDQKAIEESDEKLKKVLDIYEERLSKTKYLAGDFFSLADLSHLAFGHYLVNQTGRGNLVRERKHVSAWWDDISSRPSWKKVLELYKYPV