AlfalfaGEDB | MS.gene48030

M. sativa cultivar XinJiangDaYe / MS.gene48030

KEGG: K00799
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00043.28 PF02798.23

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48030.t1	XP_003617376.1	92.1	215	17	0	1	215	1	215	4.80E-113	417.2

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48030.t1	O80852	62.5	216	78	2	1	215	1	214	3.6e-77	289.3

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48030.t1	G7K3B0	92.1	215	17	0	1	215	1	215	3.5e-113	417.2

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene48030	0.823184	1.59E-53	-1.69E-46
MS.gene049151	MS.gene48030	0.81013	1.34E-50	-1.69E-46
MS.gene049153	MS.gene48030	0.826911	2.09E-54	-1.69E-46
MS.gene049346	MS.gene48030	0.803948	2.73E-49	-1.69E-46
MS.gene049758	MS.gene48030	0.810827	9.50E-51	-1.69E-46
MS.gene049910	MS.gene48030	0.81224	4.68E-51	-1.69E-46
MS.gene049993	MS.gene48030	0.808694	2.73E-50	-1.69E-46
MS.gene050060	MS.gene48030	0.833918	4.05E-56	-1.69E-46
MS.gene050128	MS.gene48030	0.835171	1.96E-56	-1.69E-46
MS.gene050301	MS.gene48030	0.812805	3.52E-51	-1.69E-46
MS.gene050397	MS.gene48030	0.820123	8.10E-53	-1.69E-46
MS.gene050398	MS.gene48030	0.814219	1.72E-51	-1.69E-46
MS.gene050404	MS.gene48030	0.813141	2.98E-51	-1.69E-46
MS.gene050406	MS.gene48030	0.847753	9.47E-60	-1.69E-46
MS.gene050426	MS.gene48030	-0.842906	1.94E-58	-1.69E-46
MS.gene050464	MS.gene48030	0.832488	9.19E-56	-1.69E-46
MS.gene050529	MS.gene48030	0.828425	9.06E-55	-1.69E-46
MS.gene050623	MS.gene48030	-0.801105	1.05E-48	-1.69E-46
MS.gene050642	MS.gene48030	0.852039	5.99E-61	-1.69E-46
MS.gene050670	MS.gene48030	0.811356	7.29E-51	-1.69E-46
MS.gene050971	MS.gene48030	0.824864	6.41E-54	-1.69E-46
MS.gene051373	MS.gene48030	0.808375	3.20E-50	-1.69E-46
MS.gene051860	MS.gene48030	0.812136	4.94E-51	-1.69E-46
MS.gene051983	MS.gene48030	0.870127	1.85E-66	-1.69E-46
MS.gene052011	MS.gene48030	-0.820693	5.99E-53	-1.69E-46
MS.gene052077	MS.gene48030	0.875694	2.52E-68	-1.69E-46
MS.gene052135	MS.gene48030	0.812262	4.63E-51	-1.69E-46
MS.gene052178	MS.gene48030	0.811692	6.17E-51	-1.69E-46
MS.gene052188	MS.gene48030	0.866316	3.12E-65	-1.69E-46
MS.gene052253	MS.gene48030	0.824691	7.04E-54	-1.69E-46
MS.gene052255	MS.gene48030	0.818554	1.84E-52	-1.69E-46
MS.gene052310	MS.gene48030	0.822919	1.83E-53	-1.69E-46
MS.gene052340	MS.gene48030	0.876613	1.21E-68	-1.69E-46
MS.gene052469	MS.gene48030	0.82006	8.37E-53	-1.69E-46
MS.gene052758	MS.gene48030	0.800503	1.40E-48	-1.69E-46
MS.gene053073	MS.gene48030	0.815279	1.00E-51	-1.69E-46
MS.gene05316	MS.gene48030	0.847799	9.20E-60	-1.69E-46
MS.gene053330	MS.gene48030	0.805394	1.36E-49	-1.69E-46
MS.gene053494	MS.gene48030	0.836129	1.12E-56	-1.69E-46
MS.gene053557	MS.gene48030	0.853565	2.20E-61	-1.69E-46
MS.gene053836	MS.gene48030	0.844318	8.14E-59	-1.69E-46
MS.gene053928	MS.gene48030	0.849291	3.55E-60	-1.69E-46
MS.gene054183	MS.gene48030	0.837004	6.71E-57	-1.69E-46
MS.gene054349	MS.gene48030	0.896812	2.57E-76	-1.69E-46
MS.gene054556	MS.gene48030	0.809929	1.48E-50	-1.69E-46
MS.gene054719	MS.gene48030	0.801684	8.02E-49	-1.69E-46
MS.gene054930	MS.gene48030	0.823161	1.61E-53	-1.69E-46
MS.gene055116	MS.gene48030	0.825788	3.87E-54	-1.69E-46
MS.gene055422	MS.gene48030	0.805592	1.24E-49	-1.69E-46
MS.gene05553	MS.gene48030	0.886508	3.22E-72	-1.69E-46
MS.gene055604	MS.gene48030	0.812528	4.05E-51	-1.69E-46
MS.gene056233	MS.gene48030	0.852417	4.68E-61	-1.69E-46
MS.gene056407	MS.gene48030	0.80477	1.84E-49	-1.69E-46
MS.gene056612	MS.gene48030	0.821802	3.33E-53	-1.69E-46
MS.gene056659	MS.gene48030	0.874488	6.50E-68	-1.69E-46
MS.gene056723	MS.gene48030	0.841617	4.26E-58	-1.69E-46
MS.gene056899	MS.gene48030	-0.842536	2.44E-58	-1.69E-46
MS.gene056979	MS.gene48030	0.866685	2.38E-65	-1.69E-46
MS.gene05702	MS.gene48030	0.845375	4.22E-59	-1.69E-46
MS.gene057396	MS.gene48030	0.870813	1.10E-66	-1.69E-46
MS.gene057448	MS.gene48030	0.826053	3.35E-54	-1.69E-46
MS.gene057449	MS.gene48030	0.817353	3.45E-52	-1.69E-46
MS.gene057450	MS.gene48030	0.821027	5.02E-53	-1.69E-46
MS.gene057749	MS.gene48030	0.81513	1.08E-51	-1.69E-46
MS.gene057754	MS.gene48030	0.814715	1.34E-51	-1.69E-46
MS.gene057823	MS.gene48030	0.801057	1.08E-48	-1.69E-46
MS.gene057825	MS.gene48030	0.801274	9.73E-49	-1.69E-46
MS.gene058002	MS.gene48030	0.852081	5.83E-61	-1.69E-46
MS.gene05811	MS.gene48030	0.811526	6.70E-51	-1.69E-46
MS.gene058142	MS.gene48030	0.865625	5.16E-65	-1.69E-46
MS.gene058276	MS.gene48030	0.831819	1.34E-55	-1.69E-46
MS.gene058371	MS.gene48030	0.809746	1.62E-50	-1.69E-46
MS.gene058435	MS.gene48030	0.812307	4.53E-51	-1.69E-46
MS.gene058710	MS.gene48030	0.839458	1.57E-57	-1.69E-46
MS.gene058749	MS.gene48030	0.804558	2.04E-49	-1.69E-46
MS.gene05886	MS.gene48030	0.803232	3.85E-49	-1.69E-46
MS.gene058928	MS.gene48030	0.836939	6.97E-57	-1.69E-46
MS.gene058949	MS.gene48030	0.82787	1.23E-54	-1.69E-46
MS.gene059011	MS.gene48030	0.826203	3.09E-54	-1.69E-46
MS.gene05907	MS.gene48030	0.846123	2.65E-59	-1.69E-46
MS.gene059285	MS.gene48030	0.86692	2.00E-65	-1.69E-46
MS.gene059294	MS.gene48030	0.822495	2.30E-53	-1.69E-46
MS.gene059420	MS.gene48030	0.839162	1.87E-57	-1.69E-46
MS.gene059597	MS.gene48030	0.803114	4.07E-49	-1.69E-46
MS.gene059692	MS.gene48030	0.809168	2.16E-50	-1.69E-46
MS.gene059695	MS.gene48030	0.804533	2.06E-49	-1.69E-46
MS.gene059788	MS.gene48030	0.802289	6.02E-49	-1.69E-46
MS.gene059807	MS.gene48030	0.801554	8.53E-49	-1.69E-46
MS.gene05984	MS.gene48030	0.840342	9.21E-58	-1.69E-46
MS.gene059894	MS.gene48030	0.865117	7.45E-65	-1.69E-46
MS.gene060247	MS.gene48030	0.848925	4.49E-60	-1.69E-46
MS.gene060407	MS.gene48030	0.842107	3.16E-58	-1.69E-46
MS.gene060495	MS.gene48030	0.813921	2.00E-51	-1.69E-46
MS.gene061049	MS.gene48030	0.870092	1.89E-66	-1.69E-46
MS.gene061051	MS.gene48030	-0.808041	3.76E-50	-1.69E-46
MS.gene061154	MS.gene48030	0.817879	2.62E-52	-1.69E-46
MS.gene061159	MS.gene48030	0.892553	1.43E-74	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene030405	MS.gene48030	PPI
MS.gene48030	MS.gene049706	PPI
MS.gene48030	MS.gene05016	PPI
MS.gene03034	MS.gene48030	PPI
MS.gene48030	MS.gene048703	PPI
MS.gene69505	MS.gene48030	PPI
MS.gene04976	MS.gene48030	PPI
MS.gene017062	MS.gene48030	PPI
MS.gene005621	MS.gene48030	PPI
MS.gene72151	MS.gene48030	PPI
MS.gene48030	MS.gene48032	PPI
MS.gene48030	MS.gene017062	PPI
MS.gene48030	MS.gene07192	PPI
MS.gene008337	MS.gene48030	PPI
MS.gene049699	MS.gene48030	PPI
MS.gene038277	MS.gene48030	PPI
MS.gene83384	MS.gene48030	PPI
MS.gene20711	MS.gene48030	PPI
MS.gene008334	MS.gene48030	PPI
MS.gene008278	MS.gene48030	PPI
MS.gene061566	MS.gene48030	PPI
MS.gene48030	MS.gene048797	PPI
MS.gene019181	MS.gene48030	PPI
MS.gene017060	MS.gene48030	PPI
MS.gene019183	MS.gene48030	PPI
MS.gene22195	MS.gene48030	PPI
MS.gene048743	MS.gene48030	PPI
MS.gene69499	MS.gene48030	PPI
MS.gene22188	MS.gene48030	PPI
MS.gene000510	MS.gene48030	PPI
MS.gene47714	MS.gene48030	PPI
MS.gene48030	MS.gene83384	PPI
MS.gene22196	MS.gene48030	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48030.t1	MTR_5g090910	92.093	215	17	0	1	215	1	215	1.37e-148	412
MS.gene48030.t1	MTR_5g090920	89.352	216	23	0	1	216	1	216	1.61e-144	402
MS.gene48030.t1	MTR_3g450790	69.585	217	63	2	1	216	1	215	1.02e-109	313
MS.gene48030.t1	MTR_3g450930	70.370	216	61	2	1	215	1	214	4.19e-109	312
MS.gene48030.t1	MTR_5g090910	90.066	151	15	0	65	215	8	158	7.91e-100	286
MS.gene48030.t1	MTR_3g064700	52.778	216	96	4	1	213	1	213	1.19e-75	227
MS.gene48030.t1	MTR_1g026140	42.922	219	118	4	3	215	5	222	1.39e-56	179
MS.gene48030.t1	MTR_1g088840	42.925	212	116	4	2	211	3	211	2.87e-56	178
MS.gene48030.t1	MTR_1g088825	42.925	212	116	4	2	211	3	211	2.87e-56	178
MS.gene48030.t1	MTR_1g088850	43.128	211	116	4	1	209	1	209	6.76e-55	174
MS.gene48030.t1	MTR_1g088845	43.396	212	115	4	2	211	3	211	1.16e-53	171
MS.gene48030.t1	MTR_1g088840	42.771	166	91	3	47	211	2	164	1.02e-42	142
MS.gene48030.t1	MTR_1g088840	45.217	115	59	3	98	211	4	115	1.70e-27	101
MS.gene48030.t1	MTR_1g492670	48.485	66	33	1	146	211	2	66	1.26e-15	69.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48030.t1	AT2G30860	62.212	217	79	2	1	216	1	215	1.16e-100	291
MS.gene48030.t1	AT2G30870	58.525	217	87	2	1	216	1	215	3.43e-90	264
MS.gene48030.t1	AT3G03190	48.826	213	105	3	1	211	1	211	1.88e-68	209
MS.gene48030.t1	AT2G30860	61.290	155	57	2	1	154	1	153	1.12e-65	200
MS.gene48030.t1	AT5G17220	45.283	212	114	2	1	211	1	211	2.07e-63	196
MS.gene48030.t1	AT3G62760	45.714	210	110	4	1	208	1	208	2.58e-59	186
MS.gene48030.t1	AT2G47730	41.706	211	119	4	5	213	54	262	3.38e-55	177
MS.gene48030.t1	AT2G47730	41.706	211	119	4	5	213	54	262	3.38e-55	177
MS.gene48030.t1	AT1G02930	41.827	208	117	4	3	209	4	208	3.68e-51	165
MS.gene48030.t1	AT1G02930	41.827	208	117	4	3	209	4	208	3.68e-51	165
MS.gene48030.t1	AT2G02930	42.180	211	116	4	3	209	4	212	1.96e-50	163
MS.gene48030.t1	AT1G02920	42.308	208	117	3	3	209	4	209	2.56e-50	162
MS.gene48030.t1	AT4G02520	40.952	210	118	4	3	208	4	211	6.05e-50	162
MS.gene48030.t1	AT1G02950	40.686	204	117	4	4	205	26	227	8.49e-46	152
MS.gene48030.t1	AT1G02950	40.686	204	117	4	4	205	26	227	8.49e-46	152
MS.gene48030.t1	AT1G02950	40.686	204	117	4	4	205	28	229	9.27e-46	152
MS.gene48030.t1	AT1G02950	40.686	204	117	4	4	205	38	239	1.18e-45	152
MS.gene48030.t1	AT1G02940	38.095	210	126	4	4	211	40	247	4.67e-45	150
MS.gene48030.t1	AT1G02940	38.095	210	126	4	4	211	40	247	4.67e-45	150
MS.gene48030.t1	AT1G02940	38.095	210	126	4	4	211	65	272	6.60e-45	151
MS.gene48030.t1	AT1G02940	38.095	210	126	4	4	211	53	260	7.04e-45	150
MS.gene48030.t1	AT1G49860	40.097	207	117	4	9	209	9	214	4.04e-43	145
MS.gene48030.t1	AT1G02950	38.194	144	86	3	63	205	60	201	2.05e-25	99.0
MS.gene48030.t1	AT2G02390	31.633	98	65	1	11	108	18	113	2.33e-11	60.8
MS.gene48030.t1	AT2G02390	31.633	98	65	1	11	108	18	113	2.96e-11	61.2
MS.gene48030.t1	AT2G02380	36.765	68	43	0	10	77	20	87	9.79e-11	59.7

Find 62 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TATGAGTCACCTTCCATTTA+TGG	0.066681	5.2:+76925457	MS.gene48030:CDS
GATGGAGACTATACCCTTTA+TGG	0.175031	5.2:+76924748	MS.gene48030:CDS
GGATTACGTTGTTAACAATA+TGG	0.214666	5.2:+76925478	MS.gene48030:CDS
TCTCCCTCCAAGACATTAAT+AGG	0.252191	5.2:-76924559	None:intergenic
GTTCACAATCTGCAGCCTTT+TGG	0.299664	5.2:+76924706	MS.gene48030:intron
TCACTCTCTTCAATCACCTT+TGG	0.309741	5.2:-76925347	None:intergenic
TTAACAACGTAATCCATAAA+TGG	0.311970	5.2:-76925470	None:intergenic
GCTATCAAAGAGCAAGTATT+TGG	0.324415	5.2:+76925409	MS.gene48030:CDS
GGGGAAGGATTATTTGATAA+AGG	0.330935	5.2:+76925499	MS.gene48030:CDS
TCTTCAATCACCTTTGGATC+TGG	0.357222	5.2:-76925341	None:intergenic
AAGATACACTTCACTTAAGT+TGG	0.374978	5.2:-76925602	None:intergenic
TGAGAAGAAAATCGAATTTG+AGG	0.392525	5.2:+76924531	MS.gene48030:CDS
GGTTGTCCCTATTAATGTCT+TGG	0.396323	5.2:+76924552	MS.gene48030:CDS
ACCTGAGTACCTCAAATTAC+AGG	0.397815	5.2:+76924591	MS.gene48030:CDS
ACTGTTCCTGTTATTAAAGA+TGG	0.400215	5.2:+76924730	MS.gene48030:CDS
CATCTATTTGTGCAGAGTCT+CGG	0.401539	5.2:+76925138	MS.gene48030:intron
ATCTATTTGTGCAGAGTCTC+GGG	0.405511	5.2:+76925139	MS.gene48030:intron
TAGTCTCCATCTTTAATAAC+AGG	0.407930	5.2:-76924736	None:intergenic
GATTACGTTGTTAACAATAT+GGG	0.426681	5.2:+76925479	MS.gene48030:CDS
AGGAAAGACAATAGAAGAAA+GGG	0.428460	5.2:+76925214	MS.gene48030:CDS
TGAAGAGAGTGAAGCAAAGT+TGG	0.434591	5.2:+76925358	MS.gene48030:CDS
AAGACAAACCAACACTCGTT+TGG	0.452083	5.2:-76924506	None:intergenic
TCTCAAGGGGTTGAGTTACT+AGG	0.455527	5.2:+76925194	MS.gene48030:CDS
GTGAATTAACCTGTAATTTG+AGG	0.477315	5.2:-76924600	None:intergenic
ACCTGTAATTTGAGGTACTC+AGG	0.483901	5.2:-76924592	None:intergenic
TAGGAAAGACAATAGAAGAA+AGG	0.489516	5.2:+76925213	MS.gene48030:CDS
TCGTTTGGCTGAGGCACAGT+GGG	0.490352	5.2:-76924491	None:intergenic
GTGCCGTCAGCTAGTAGTGC+AGG	0.501569	5.2:-76925317	None:intergenic
CTCCCTCCAAGACATTAATA+GGG	0.501721	5.2:-76924558	None:intergenic
TCAAGAACTTTGTTCCATGA+TGG	0.514235	5.2:-76925566	None:intergenic
AGGATTATTTGATAAAGGAT+AGG	0.514814	5.2:+76925504	MS.gene48030:CDS
ATACACTTCACTTAAGTTGG+AGG	0.517811	5.2:-76925599	None:intergenic
ATAGGAAGTATGTTAGTGCT+TGG	0.518602	5.2:+76925522	MS.gene48030:CDS
GGAAGTATGTTAGTGCTTGG+TGG	0.519087	5.2:+76925525	MS.gene48030:CDS
ATAACAGGAACAGTTCCAAA+AGG	0.526229	5.2:-76924721	None:intergenic
CGTTGTTAACAATATGGGGA+AGG	0.527650	5.2:+76925484	MS.gene48030:CDS
TGTCCCTATTAATGTCTTGG+AGG	0.533420	5.2:+76924555	MS.gene48030:CDS
ACCATGGTAGTGAAGGTGTA+TGG	0.535696	5.2:+76924466	None:intergenic
GAAGAGAGTGAAGCAAAGTT+GGG	0.538644	5.2:+76925359	MS.gene48030:CDS
TCAAAGAGCAAGTATTTGGC+TGG	0.546465	5.2:+76925413	MS.gene48030:CDS
CAGGTCAAATTGTATGCTGA+TGG	0.554286	5.2:-76925281	None:intergenic
AATAGAAGAAAGGGGTCTTG+TGG	0.555254	5.2:+76925223	MS.gene48030:CDS
TGCAGGAAACAAACAATGAC+AGG	0.556705	5.2:-76925300	None:intergenic
TGCCTCAGCCAAACGAGTGT+TGG	0.558041	5.2:+76924498	MS.gene48030:CDS
GTCCCTATTAATGTCTTGGA+GGG	0.562063	5.2:+76924556	MS.gene48030:CDS
TTTCCTGCACTACTAGCTGA+CGG	0.566461	5.2:+76925314	MS.gene48030:CDS
AACCAACACTCGTTTGGCTG+AGG	0.566743	5.2:-76924500	None:intergenic
AAACCAAACCATGGTAGTGA+AGG	0.577644	5.2:+76924459	None:intergenic
TGTTGAACATTTATGAAGAG+AGG	0.582845	5.2:+76925387	MS.gene48030:CDS
ATTACGTTGTTAACAATATG+GGG	0.584797	5.2:+76925480	MS.gene48030:CDS
CAACGTAATCCATAAATGGA+AGG	0.591331	5.2:-76925466	None:intergenic
ACCATACACCTTCACTACCA+TGG	0.604095	5.2:-76924467	None:intergenic
GAGTGAAGCAAAGTTGGGCA+AGG	0.616935	5.2:+76925364	MS.gene48030:CDS
AAAGGGGTCTTGTGGAACAA+TGG	0.625869	5.2:+76925231	MS.gene48030:CDS
TGACGGCACTCCAGATCCAA+AGG	0.632803	5.2:+76925331	MS.gene48030:CDS
ATATAAGTAGTAGACCATCA+TGG	0.637766	5.2:+76925552	MS.gene48030:CDS
CTCGTTTGGCTGAGGCACAG+TGG	0.639842	5.2:-76924492	None:intergenic
GGAAAGACAATAGAAGAAAG+GGG	0.656416	5.2:+76925215	MS.gene48030:CDS
AGGTCAAATTGTATGCTGAT+GGG	0.663491	5.2:-76925280	None:intergenic
TCAAATTGTATGCTGATGGG+TGG	0.678075	5.2:-76925277	None:intergenic
GAAGGTGACTCATATCAGCA+AGG	0.682286	5.2:-76925448	None:intergenic
CGTTTGGCTGAGGCACAGTG+GGG	0.723546	5.2:-76924490	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAACATATAACCAATAGTAT+TGG	-	chr5.2:76924982-76925001	None:intergenic	20.0%
!!	TCTTATCTACATATTTGATA+TGG	+	chr5.2:76924819-76924838	MS.gene48030:intron	20.0%
!!	TTGGTTATATGTTTAAATCT+TGG	+	chr5.2:76924988-76925007	MS.gene48030:intron	20.0%
!	AGGATTATTTGATAAAGGAT+AGG	+	chr5.2:76925504-76925523	MS.gene48030:CDS	25.0%
!	ATTACGTTGTTAACAATATG+GGG	+	chr5.2:76925480-76925499	MS.gene48030:CDS	25.0%
!	CTGAAAAATATAGATCTCAA+GGG	+	chr5.2:76925180-76925199	MS.gene48030:CDS	25.0%
!	GATTACGTTGTTAACAATAT+GGG	+	chr5.2:76925479-76925498	MS.gene48030:CDS	25.0%
!	TCAACAAGATAATACACTAA+TGG	-	chr5.2:76925106-76925125	None:intergenic	25.0%
!	TGAAAAATATAGATCTCAAG+GGG	+	chr5.2:76925181-76925200	MS.gene48030:CDS	25.0%
!	TTAACAACGTAATCCATAAA+TGG	-	chr5.2:76925473-76925492	None:intergenic	25.0%
!!	CCTTGTTTAATATGCTAAAA+AGG	+	chr5.2:76924643-76924662	MS.gene48030:intron	25.0%
!!!	AAGACCTCAATTTTTTTTTG+AGG	+	chr5.2:76924902-76924921	MS.gene48030:intron	25.0%
!!!	AGACCTCAATTTTTTTTTGA+GGG	+	chr5.2:76924903-76924922	MS.gene48030:intron	25.0%
!!!	CAAGATGTTTTAACCATAAA+GGG	-	chr5.2:76924764-76924783	None:intergenic	25.0%
!!!	CCTTTTTAGCATATTAAACA+AGG	-	chr5.2:76924646-76924665	None:intergenic	25.0%
!!!	GGTTTTATGTCTCAAAATTT+TGG	+	chr5.2:76924871-76924890	MS.gene48030:intron	25.0%
!!!	TCAAGATGTTTTAACCATAA+AGG	-	chr5.2:76924765-76924784	None:intergenic	25.0%
	ACTGTTCCTGTTATTAAAGA+TGG	+	chr5.2:76924730-76924749	MS.gene48030:CDS	30.0%
	AGGAAAGACAATAGAAGAAA+GGG	+	chr5.2:76925214-76925233	MS.gene48030:CDS	30.0%
	ATATAAGTAGTAGACCATCA+TGG	+	chr5.2:76925552-76925571	MS.gene48030:CDS	30.0%
	CTACCCTCAAAAAAAAATTG+AGG	-	chr5.2:76924909-76924928	None:intergenic	30.0%
	GCTGAAAAATATAGATCTCA+AGG	+	chr5.2:76925179-76925198	MS.gene48030:CDS	30.0%
	GCTTGTAAACACTTTAAACA+AGG	+	chr5.2:76924850-76924869	MS.gene48030:intron	30.0%
	GGATTACGTTGTTAACAATA+TGG	+	chr5.2:76925478-76925497	MS.gene48030:CDS	30.0%
	GTGAATTAACCTGTAATTTG+AGG	-	chr5.2:76924603-76924622	None:intergenic	30.0%
	TAGGAAAGACAATAGAAGAA+AGG	+	chr5.2:76925213-76925232	MS.gene48030:CDS	30.0%
	TAGTCTCCATCTTTAATAAC+AGG	-	chr5.2:76924739-76924758	None:intergenic	30.0%
	TGAGAAGAAAATCGAATTTG+AGG	+	chr5.2:76924531-76924550	MS.gene48030:CDS	30.0%
	TGTTGAACATTTATGAAGAG+AGG	+	chr5.2:76925387-76925406	MS.gene48030:CDS	30.0%
	TTGAGGGTAGACATAATATT+TGG	+	chr5.2:76924919-76924938	MS.gene48030:intron	30.0%
!	AAGTAGAAAAGCATGACATA+GGG	-	chr5.2:76924788-76924807	None:intergenic	30.0%
!	CATATAACCAATAGTATTGG+AGG	-	chr5.2:76924979-76924998	None:intergenic	30.0%
!	TAAGTAGAAAAGCATGACAT+AGG	-	chr5.2:76924789-76924808	None:intergenic	30.0%
	AGGTCAAATTGTATGCTGAT+GGG	-	chr5.2:76925283-76925302	None:intergenic	35.0%
	ATAACAGGAACAGTTCCAAA+AGG	-	chr5.2:76924724-76924743	None:intergenic	35.0%
	CAACGTAATCCATAAATGGA+AGG	-	chr5.2:76925469-76925488	None:intergenic	35.0%
	GAAAAGACCTCCAATACTAT+TGG	+	chr5.2:76924969-76924988	MS.gene48030:intron	35.0%
	GCTATCAAAGAGCAAGTATT+TGG	+	chr5.2:76925409-76925428	MS.gene48030:CDS	35.0%
	GGAAAGACAATAGAAGAAAG+GGG	+	chr5.2:76925215-76925234	MS.gene48030:CDS	35.0%
	GGATGAAAGAAAAACAGAAG+AGG	-	chr5.2:76924625-76924644	None:intergenic	35.0%
	GGGGAAGGATTATTTGATAA+AGG	+	chr5.2:76925499-76925518	MS.gene48030:CDS	35.0%
	TATGAGTCACCTTCCATTTA+TGG	+	chr5.2:76925457-76925476	MS.gene48030:CDS	35.0%
	TCAAGAACTTTGTTCCATGA+TGG	-	chr5.2:76925569-76925588	None:intergenic	35.0%
!	ATAGGAAGTATGTTAGTGCT+TGG	+	chr5.2:76925522-76925541	MS.gene48030:CDS	35.0%
	AAGACAAACCAACACTCGTT+TGG	-	chr5.2:76924509-76924528	None:intergenic	40.0%
	AATAGAAGAAAGGGGTCTTG+TGG	+	chr5.2:76925223-76925242	MS.gene48030:CDS	40.0%
	ACCTGAGTACCTCAAATTAC+AGG	+	chr5.2:76924591-76924610	MS.gene48030:CDS	40.0%
	ATCTATTTGTGCAGAGTCTC+GGG	+	chr5.2:76925139-76925158	MS.gene48030:intron	40.0%
	CAGGTCAAATTGTATGCTGA+TGG	-	chr5.2:76925284-76925303	None:intergenic	40.0%
	CATCTATTTGTGCAGAGTCT+CGG	+	chr5.2:76925138-76925157	MS.gene48030:intron	40.0%
	CGTTGTTAACAATATGGGGA+AGG	+	chr5.2:76925484-76925503	MS.gene48030:CDS	40.0%
	CTCCCTCCAAGACATTAATA+GGG	-	chr5.2:76924561-76924580	None:intergenic	40.0%
	GAAGAGAGTGAAGCAAAGTT+GGG	+	chr5.2:76925359-76925378	MS.gene48030:CDS	40.0%
	GATGGAGACTATACCCTTTA+TGG	+	chr5.2:76924748-76924767	MS.gene48030:CDS	40.0%
	GGTTGTCCCTATTAATGTCT+TGG	+	chr5.2:76924552-76924571	MS.gene48030:CDS	40.0%
	GTCCCTATTAATGTCTTGGA+GGG	+	chr5.2:76924556-76924575	MS.gene48030:CDS	40.0%
	TCAAAGAGCAAGTATTTGGC+TGG	+	chr5.2:76925413-76925432	MS.gene48030:CDS	40.0%
	TCAAATTGTATGCTGATGGG+TGG	-	chr5.2:76925280-76925299	None:intergenic	40.0%
	TCACTCTCTTCAATCACCTT+TGG	-	chr5.2:76925350-76925369	None:intergenic	40.0%
	TCTCCCTCCAAGACATTAAT+AGG	-	chr5.2:76924562-76924581	None:intergenic	40.0%
	TCTTCAATCACCTTTGGATC+TGG	-	chr5.2:76925344-76925363	None:intergenic	40.0%
	TGAAGAGAGTGAAGCAAAGT+TGG	+	chr5.2:76925358-76925377	MS.gene48030:CDS	40.0%
	TGCAGGAAACAAACAATGAC+AGG	-	chr5.2:76925303-76925322	None:intergenic	40.0%
	TGTCCCTATTAATGTCTTGG+AGG	+	chr5.2:76924555-76924574	MS.gene48030:CDS	40.0%
!	ACCTGTAATTTGAGGTACTC+AGG	-	chr5.2:76924595-76924614	None:intergenic	40.0%
	GAAGGTGACTCATATCAGCA+AGG	-	chr5.2:76925451-76925470	None:intergenic	45.0%
	TCTCAAGGGGTTGAGTTACT+AGG	+	chr5.2:76925194-76925213	MS.gene48030:CDS	45.0%
	TTTCCTGCACTACTAGCTGA+CGG	+	chr5.2:76925314-76925333	MS.gene48030:CDS	45.0%
!	AAAGGGGTCTTGTGGAACAA+TGG	+	chr5.2:76925231-76925250	MS.gene48030:CDS	45.0%
!	GGAAGTATGTTAGTGCTTGG+TGG	+	chr5.2:76925525-76925544	MS.gene48030:CDS	45.0%
!	GTTCACAATCTGCAGCCTTT+TGG	+	chr5.2:76924706-76924725	MS.gene48030:intron	45.0%
!!!	TATAAAAAAATCATTTTAAA+AGG	+	chr5.2:76925027-76925046	MS.gene48030:intron	5.0%
!!!	TTTTTTTATAAAAATATTTG+TGG	-	chr5.2:76925017-76925036	None:intergenic	5.0%
	AACCAACACTCGTTTGGCTG+AGG	-	chr5.2:76924503-76924522	None:intergenic	50.0%
	GAGTGAAGCAAAGTTGGGCA+AGG	+	chr5.2:76925364-76925383	MS.gene48030:CDS	50.0%
	TCGTTTGGCTGAGGCACAGT+GGG	-	chr5.2:76924494-76924513	None:intergenic	55.0%
	TGACGGCACTCCAGATCCAA+AGG	+	chr5.2:76925331-76925350	MS.gene48030:CDS	55.0%
	TGCCTCAGCCAAACGAGTGT+TGG	+	chr5.2:76924498-76924517	MS.gene48030:CDS	55.0%
	CGTTTGGCTGAGGCACAGTG+GGG	-	chr5.2:76924493-76924512	None:intergenic	60.0%
	CTCGTTTGGCTGAGGCACAG+TGG	-	chr5.2:76924495-76924514	None:intergenic	60.0%
	GTGCCGTCAGCTAGTAGTGC+AGG	-	chr5.2:76925320-76925339	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	76924469	76925610	76924469	ID=MS.gene48030
chr5.2	mRNA	76924469	76925610	76924469	ID=MS.gene48030.t1;Parent=MS.gene48030
chr5.2	exon	76924469	76924612	76924469	ID=MS.gene48030.t1.exon1;Parent=MS.gene48030.t1
chr5.2	CDS	76924469	76924612	76924469	ID=cds.MS.gene48030.t1;Parent=MS.gene48030.t1
chr5.2	exon	76924721	76924769	76924721	ID=MS.gene48030.t1.exon2;Parent=MS.gene48030.t1
chr5.2	CDS	76924721	76924769	76924721	ID=cds.MS.gene48030.t1;Parent=MS.gene48030.t1
chr5.2	exon	76925153	76925610	76925153	ID=MS.gene48030.t1.exon3;Parent=MS.gene48030.t1
chr5.2	CDS	76925153	76925610	76925153	ID=cds.MS.gene48030.t1;Parent=MS.gene48030.t1

Gene Sequence

>MS.gene48030

ATGGTAGTGAAGGTGTATGGTCCCCACTGTGCCTCAGCCAAACGAGTGTTGGTTTGTCTTGTTGAGAAGAAAATCGAATTTGAGGTTGTCCCTATTAATGTCTTGGAGGGAGAACACAAGAAACCTGAGTACCTCAAATTACAGGTTAATTCACCTCTTCTGTTTTTCTTTCATCCTTGTTTAATATGCTAAAAAGGTTTCAAAGTTTATTCATTTTCTAACTCATGCATGTTTTTTGTTCACAATCTGCAGCCTTTTGGAACTGTTCCTGTTATTAAAGATGGAGACTATACCCTTTATGGTTAAAACATCTTGACCCTATGTCATGCTTTTCTACTTATTGTTACTTCTCTTATCTACATATTTGATATGGTCGTCACAGCTTGTAAACACTTTAAACAAGGTTTTATGTCTCAAAATTTTGGATAACAAAAAGACCTCAATTTTTTTTTGAGGGTAGACATAATATTTGGTTATAATAATAAATATATGAAGTTATTGAAAAGACCTCCAATACTATTGGTTATATGTTTAAATCTTGGATTCCACAAATATTTTTATAAAAAAATCATTTTAAAAGGTCTTGATAAAAATTCTGTTATAACATATTTCTACATGCAAATTAAATCTTATACCATTAGTGTATTATCTTGTTGATTTTTGTGTTTTCATCTATTTGTGCAGAGTCTCGGGCAATAATGAGATACTATGCTGAAAAATATAGATCTCAAGGGGTTGAGTTACTAGGAAAGACAATAGAAGAAAGGGGTCTTGTGGAACAATGGCTAGAAGTTGAAGCACACAACTTCCACCCATCAGCATACAATTTGACCTGTCATTGTTTGTTTCCTGCACTACTAGCTGACGGCACTCCAGATCCAAAGGTGATTGAAGAGAGTGAAGCAAAGTTGGGCAAGGTGTTGAACATTTATGAAGAGAGGCTATCAAAGAGCAAGTATTTGGCTGGTGATTTTTTCAGCCTTGCTGATATGAGTCACCTTCCATTTATGGATTACGTTGTTAACAATATGGGGAAGGATTATTTGATAAAGGATAGGAAGTATGTTAGTGCTTGGTGGAATGATATAAGTAGTAGACCATCATGGAACAAAGTTCTTGAGTTATATAGACCTCCAACTTAA

Protein sequence

>MS.gene48030.t1

MVVKVYGPHCASAKRVLVCLVEKKIEFEVVPINVLEGEHKKPEYLKLQPFGTVPVIKDGDYTLYESRAIMRYYAEKYRSQGVELLGKTIEERGLVEQWLEVEAHNFHPSAYNLTCHCLFPALLADGTPDPKVIEESEAKLGKVLNIYEERLSKSKYLAGDFFSLADMSHLPFMDYVVNNMGKDYLIKDRKYVSAWWNDISSRPSWNKVLELYRPPT