Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69505.t1 | XP_013459656.1 | 89.8 | 215 | 3 | 1 | 1 | 196 | 1 | 215 | 2.30E-106 | 394.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69505.t1 | O80852 | 54.2 | 214 | 79 | 1 | 1 | 195 | 1 | 214 | 1.1e-67 | 257.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69505.t1 | A0A072UVM9 | 89.8 | 215 | 3 | 1 | 1 | 196 | 1 | 215 | 1.7e-106 | 394.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene69505 | MS.gene049699 | PPI |
| MS.gene019181 | MS.gene69505 | PPI |
| MS.gene008337 | MS.gene69505 | PPI |
| MS.gene69505 | MS.gene83384 | PPI |
| MS.gene69505 | MS.gene72151 | PPI |
| MS.gene019183 | MS.gene69505 | PPI |
| MS.gene061566 | MS.gene69505 | PPI |
| MS.gene69505 | MS.gene48030 | PPI |
| MS.gene22188 | MS.gene69505 | PPI |
| MS.gene47714 | MS.gene69505 | PPI |
| MS.gene69505 | MS.gene049706 | PPI |
| MS.gene69505 | MS.gene017062 | PPI |
| MS.gene69505 | MS.gene05016 | PPI |
| MS.gene22196 | MS.gene69505 | PPI |
| MS.gene69505 | MS.gene048703 | PPI |
| MS.gene017060 | MS.gene69505 | PPI |
| MS.gene22195 | MS.gene69505 | PPI |
| MS.gene69505 | MS.gene69499 | PPI |
| MS.gene03034 | MS.gene69505 | PPI |
| MS.gene048743 | MS.gene69505 | PPI |
| MS.gene69499 | MS.gene69505 | PPI |
| MS.gene000510 | MS.gene69505 | PPI |
| MS.gene69505 | MS.gene48032 | PPI |
| MS.gene69505 | MS.gene07192 | PPI |
| MS.gene030405 | MS.gene69505 | PPI |
| MS.gene005621 | MS.gene69505 | PPI |
| MS.gene04976 | MS.gene69505 | PPI |
| MS.gene69505 | MS.gene048797 | PPI |
| MS.gene038277 | MS.gene69505 | PPI |
| MS.gene20711 | MS.gene69505 | PPI |
| MS.gene008334 | MS.gene69505 | PPI |
| MS.gene008278 | MS.gene69505 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69505.t1 | MTR_3g450930 | 89.767 | 215 | 3 | 1 | 1 | 196 | 1 | 215 | 6.20e-140 | 389 |
| MS.gene69505.t1 | MTR_3g450790 | 71.163 | 215 | 43 | 1 | 1 | 196 | 1 | 215 | 2.96e-113 | 322 |
| MS.gene69505.t1 | MTR_5g090920 | 64.055 | 217 | 56 | 3 | 1 | 196 | 1 | 216 | 4.02e-96 | 278 |
| MS.gene69505.t1 | MTR_5g090910 | 62.963 | 216 | 60 | 2 | 1 | 196 | 1 | 216 | 1.64e-94 | 274 |
| MS.gene69505.t1 | MTR_3g064700 | 50.235 | 213 | 86 | 2 | 1 | 193 | 1 | 213 | 2.39e-75 | 226 |
| MS.gene69505.t1 | MTR_5g090910 | 67.105 | 152 | 49 | 1 | 46 | 196 | 8 | 159 | 5.20e-72 | 215 |
| MS.gene69505.t1 | MTR_1g088850 | 42.857 | 210 | 98 | 4 | 1 | 189 | 1 | 209 | 9.79e-54 | 171 |
| MS.gene69505.t1 | MTR_1g026140 | 42.202 | 218 | 101 | 4 | 3 | 195 | 5 | 222 | 9.55e-52 | 166 |
| MS.gene69505.t1 | MTR_1g088840 | 40.952 | 210 | 103 | 3 | 2 | 191 | 3 | 211 | 1.38e-49 | 160 |
| MS.gene69505.t1 | MTR_1g088825 | 40.952 | 210 | 103 | 3 | 2 | 191 | 3 | 211 | 1.38e-49 | 160 |
| MS.gene69505.t1 | MTR_1g088840 | 45.062 | 162 | 88 | 1 | 30 | 191 | 4 | 164 | 4.68e-46 | 149 |
| MS.gene69505.t1 | MTR_1g088845 | 40.000 | 210 | 105 | 3 | 2 | 191 | 3 | 211 | 1.63e-45 | 150 |
| MS.gene69505.t1 | MTR_1g088840 | 48.673 | 113 | 57 | 1 | 79 | 191 | 4 | 115 | 8.70e-32 | 111 |
| MS.gene69505.t1 | MTR_1g492670 | 53.030 | 66 | 30 | 1 | 126 | 191 | 2 | 66 | 1.52e-16 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69505.t1 | AT2G30860 | 54.206 | 214 | 79 | 1 | 1 | 195 | 1 | 214 | 3.94e-88 | 258 |
| MS.gene69505.t1 | AT2G30870 | 53.023 | 215 | 82 | 1 | 1 | 196 | 1 | 215 | 1.51e-84 | 249 |
| MS.gene69505.t1 | AT3G03190 | 48.131 | 214 | 91 | 2 | 1 | 194 | 1 | 214 | 1.23e-65 | 201 |
| MS.gene69505.t1 | AT5G17220 | 46.919 | 211 | 92 | 2 | 1 | 191 | 1 | 211 | 2.47e-64 | 197 |
| MS.gene69505.t1 | AT3G62760 | 44.498 | 209 | 94 | 4 | 1 | 188 | 1 | 208 | 1.33e-57 | 181 |
| MS.gene69505.t1 | AT2G30860 | 50.980 | 153 | 56 | 1 | 1 | 134 | 1 | 153 | 1.08e-53 | 169 |
| MS.gene69505.t1 | AT1G02930 | 39.130 | 207 | 104 | 4 | 3 | 189 | 4 | 208 | 5.26e-47 | 153 |
| MS.gene69505.t1 | AT1G02930 | 39.130 | 207 | 104 | 4 | 3 | 189 | 4 | 208 | 5.26e-47 | 153 |
| MS.gene69505.t1 | AT1G02920 | 39.614 | 207 | 104 | 3 | 3 | 189 | 4 | 209 | 6.21e-46 | 150 |
| MS.gene69505.t1 | AT2G02930 | 40.476 | 210 | 101 | 4 | 3 | 189 | 4 | 212 | 2.57e-45 | 149 |
| MS.gene69505.t1 | AT4G02520 | 39.234 | 209 | 103 | 4 | 3 | 188 | 4 | 211 | 2.63e-45 | 149 |
| MS.gene69505.t1 | AT2G47730 | 39.524 | 210 | 105 | 4 | 5 | 193 | 54 | 262 | 1.54e-44 | 149 |
| MS.gene69505.t1 | AT2G47730 | 39.524 | 210 | 105 | 4 | 5 | 193 | 54 | 262 | 1.54e-44 | 149 |
| MS.gene69505.t1 | AT1G49860 | 38.308 | 201 | 102 | 2 | 16 | 194 | 19 | 219 | 1.60e-42 | 143 |
| MS.gene69505.t1 | AT1G02950 | 36.765 | 204 | 107 | 4 | 4 | 186 | 28 | 230 | 2.38e-40 | 137 |
| MS.gene69505.t1 | AT1G02950 | 36.765 | 204 | 107 | 4 | 4 | 186 | 26 | 228 | 2.74e-40 | 137 |
| MS.gene69505.t1 | AT1G02950 | 36.765 | 204 | 107 | 4 | 4 | 186 | 26 | 228 | 2.74e-40 | 137 |
| MS.gene69505.t1 | AT1G02950 | 36.765 | 204 | 107 | 4 | 4 | 186 | 38 | 240 | 3.70e-40 | 137 |
| MS.gene69505.t1 | AT1G02940 | 37.799 | 209 | 108 | 4 | 4 | 191 | 40 | 247 | 7.05e-38 | 131 |
| MS.gene69505.t1 | AT1G02940 | 37.799 | 209 | 108 | 4 | 4 | 191 | 40 | 247 | 7.05e-38 | 131 |
| MS.gene69505.t1 | AT1G02940 | 37.799 | 209 | 108 | 4 | 4 | 191 | 53 | 260 | 7.74e-38 | 132 |
| MS.gene69505.t1 | AT1G02940 | 37.799 | 209 | 108 | 4 | 4 | 191 | 65 | 272 | 9.98e-38 | 132 |
| MS.gene69505.t1 | AT1G02950 | 38.889 | 144 | 86 | 2 | 44 | 186 | 60 | 202 | 1.93e-31 | 114 |
Find 61 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTTCGGGCATGCATAGTC+TGG | 0.268940 | 3.1:-32424529 | None:intergenic |
| GACACACAATCACCCGTTTC+GGG | 0.300907 | 3.1:-32424543 | None:intergenic |
| CTTATAATATTGCAGAATCT+AGG | 0.309658 | 3.1:+32426843 | MS.gene69505:intron |
| CAACTTAGTTATGAATCTTT+TGG | 0.310045 | 3.1:+32426997 | MS.gene69505:CDS |
| TAGTCACCATCTTGAATAAC+AGG | 0.313539 | 3.1:-32426532 | None:intergenic |
| ACGATGGTTGTGAAGGTATA+TGG | 0.320484 | 3.1:+32424505 | None:intergenic |
| TTCATTGGGAAAAGAGAATA+TGG | 0.323458 | 3.1:+32427195 | MS.gene69505:CDS |
| GACCTTAGCCATCTTCCATT+TGG | 0.332797 | 3.1:+32427157 | MS.gene69505:CDS |
| TCATTATTTGATGAATTCAT+TGG | 0.351095 | 3.1:+32427180 | MS.gene69505:CDS |
| GATTGGTGGGTTGAAGTTAT+GGG | 0.362347 | 3.1:-32426972 | None:intergenic |
| AGACACACAATCACCCGTTT+CGG | 0.364101 | 3.1:-32424544 | None:intergenic |
| GATGGTGACTATACTCTCTA+TGG | 0.382544 | 3.1:+32426544 | MS.gene69505:CDS |
| AGATTGGTGGGTTGAAGTTA+TGG | 0.389288 | 3.1:-32426973 | None:intergenic |
| TTCATAACTAAGTTGTAGAT+TGG | 0.424724 | 3.1:-32426989 | None:intergenic |
| AGACTATGCATGCCCGAAAC+GGG | 0.432658 | 3.1:+32424531 | MS.gene69505:CDS |
| AAAGGTGTTGGATATTTATG+AGG | 0.436190 | 3.1:+32427084 | MS.gene69505:CDS |
| CATTATTTGATGAATTCATT+GGG | 0.438338 | 3.1:+32427181 | MS.gene69505:CDS |
| AATCAAGGGACTGATTTGCT+TGG | 0.451580 | 3.1:+32426899 | MS.gene69505:CDS |
| TTCATCAAATAATGACCAAA+TGG | 0.459253 | 3.1:-32427172 | None:intergenic |
| TTGTTCCATATGCAGCCCTT+TGG | 0.469690 | 3.1:+32426502 | MS.gene69505:intron |
| CAGACTATGCATGCCCGAAA+CGG | 0.477012 | 3.1:+32424530 | MS.gene69505:CDS |
| TAACTAAGTTGTAGATTGGT+GGG | 0.483534 | 3.1:-32426985 | None:intergenic |
| GGTGGGATGATATTAGCAAT+AGG | 0.491315 | 3.1:+32427245 | MS.gene69505:CDS |
| ATATTAGCAATAGGCCATCT+TGG | 0.491886 | 3.1:+32427254 | MS.gene69505:CDS |
| TGGAAAGACAATAGACGAAA+GGG | 0.492404 | 3.1:+32426919 | MS.gene69505:CDS |
| TTACTCCCTGTTATTCAAGA+TGG | 0.495181 | 3.1:+32426526 | MS.gene69505:CDS |
| CAATAGGCCATCTTGGAAGA+AGG | 0.501103 | 3.1:+32427261 | MS.gene69505:CDS |
| ATCAATTACGATGGTTGTGA+AGG | 0.512854 | 3.1:+32424498 | None:intergenic |
| AATAATGACCAAATGGAAGA+TGG | 0.513184 | 3.1:-32427165 | None:intergenic |
| AAAGGATATTGAGTTTGAAA+CGG | 0.517622 | 3.1:+32424573 | MS.gene69505:CDS |
| TTATAATATTGCAGAATCTA+GGG | 0.521043 | 3.1:+32426844 | MS.gene69505:intron |
| GATTGTGTGTCTAATTGAAA+AGG | 0.522247 | 3.1:+32424555 | MS.gene69505:CDS |
| ATAACTAAGTTGTAGATTGG+TGG | 0.523120 | 3.1:-32426986 | None:intergenic |
| GGGAAAAGAGAATATGGTAA+AGG | 0.528479 | 3.1:+32427201 | MS.gene69505:CDS |
| AGAAAAGCTTGGAAAGGTGT+TGG | 0.539764 | 3.1:+32427072 | MS.gene69505:CDS |
| GCTATCAAAGACTAAGTACT+TGG | 0.554970 | 3.1:+32427111 | MS.gene69505:CDS |
| CAAGAGAGTGAAGAAAAGCT+TGG | 0.555057 | 3.1:+32427061 | MS.gene69505:CDS |
| GTTTCGGGCATGCATAGTCT+GGG | 0.556405 | 3.1:-32424528 | None:intergenic |
| AGAATATGGTAAAGGAGAGG+AGG | 0.556891 | 3.1:+32427209 | MS.gene69505:CDS |
| TCAAAGACTAAGTACTTGGC+TGG | 0.557175 | 3.1:+32427115 | MS.gene69505:CDS |
| TGTAGAACCTTCTTCCAAGA+TGG | 0.563715 | 3.1:-32427268 | None:intergenic |
| CACAAACCCTCTAATCACAT+AGG | 0.571439 | 3.1:-32427304 | None:intergenic |
| GAGTGAAGAAAAGCTTGGAA+AGG | 0.576328 | 3.1:+32427066 | MS.gene69505:CDS |
| AGAGGAGGCATGTGAATGCT+TGG | 0.577585 | 3.1:+32427224 | MS.gene69505:CDS |
| AATAGACGAAAGGGGTCTTG+TGG | 0.579715 | 3.1:+32426928 | MS.gene69505:CDS |
| GACCAAATGGAAGATGGCTA+AGG | 0.581008 | 3.1:-32427159 | None:intergenic |
| AAAGGGGTCTTGTGGAGCAA+TGG | 0.587189 | 3.1:+32426936 | MS.gene69505:CDS |
| ACAAACCCTCTAATCACATA+GGG | 0.591213 | 3.1:-32427303 | None:intergenic |
| TGTTGGATATTTATGAGGAG+AGG | 0.593358 | 3.1:+32427089 | MS.gene69505:CDS |
| AATAACAGGGAGTAATCCAA+AGG | 0.597435 | 3.1:-32426518 | None:intergenic |
| CAGAATCTAGGGCAATCCTA+AGG | 0.599160 | 3.1:+32426855 | MS.gene69505:intron |
| AAGAGAATATGGTAAAGGAG+AGG | 0.603130 | 3.1:+32427206 | MS.gene69505:CDS |
| GGAGGCATGTGAATGCTTGG+TGG | 0.612663 | 3.1:+32427227 | MS.gene69505:CDS |
| TTGGAAAGACAATAGACGAA+AGG | 0.615730 | 3.1:+32426918 | MS.gene69505:CDS |
| GAGGCATGTGAATGCTTGGT+GGG | 0.616766 | 3.1:+32427228 | MS.gene69505:CDS |
| CAGATGGAAGTCCCACTAGT+GGG | 0.622928 | 3.1:-32427024 | None:intergenic |
| ATAACAGGGAGTAATCCAAA+GGG | 0.626677 | 3.1:-32426517 | None:intergenic |
| TCAGATGGAAGTCCCACTAG+TGG | 0.646315 | 3.1:-32427025 | None:intergenic |
| GAAGATGGCTAAGGTCAGCA+AGG | 0.653599 | 3.1:-32427150 | None:intergenic |
| GGAAAGACAATAGACGAAAG+GGG | 0.679856 | 3.1:+32426920 | MS.gene69505:CDS |
| AGTCACCATCTTGAATAACA+GGG | 0.712338 | 3.1:-32426531 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAACGAT+TGG | - | chr3.1:32424697-32424716 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAAACGATT+GGG | - | chr3.1:32424696-32424715 | None:intergenic | 10.0% |
| !! | TGAATGAAATTATAATTTAA+TGG | + | chr3.1:32425143-32425162 | MS.gene69505:intron | 10.0% |
| !! | ACAAAATAGAAAAAAAATTC+AGG | + | chr3.1:32425244-32425263 | MS.gene69505:intron | 15.0% |
| !! | TAACCTTATAACTTATATAA+TGG | - | chr3.1:32425280-32425299 | None:intergenic | 15.0% |
| !!! | TATATATATATATTTTGGTC+AGG | - | chr3.1:32425007-32425026 | None:intergenic | 15.0% |
| !!! | TATTTTCATTATCATTATAG+TGG | + | chr3.1:32426236-32426255 | MS.gene69505:intron | 15.0% |
| !!! | TTTCTATTTTGTACAAAAAA+GGG | - | chr3.1:32425236-32425255 | None:intergenic | 15.0% |
| !!! | TTTTCTATTTTGTACAAAAA+AGG | - | chr3.1:32425237-32425256 | None:intergenic | 15.0% |
| !! | AAATAGATAGACAAAATTGT+TGG | - | chr3.1:32426417-32426436 | None:intergenic | 20.0% |
| !! | AATAGATAGACAAAATTGTT+GGG | - | chr3.1:32426416-32426435 | None:intergenic | 20.0% |
| !! | ACTCAAAAACCAAAAAAATA+TGG | + | chr3.1:32425183-32425202 | MS.gene69505:intron | 20.0% |
| !! | AGAAAAAAAATTCAGGATAA+GGG | + | chr3.1:32425251-32425270 | MS.gene69505:intron | 20.0% |
| !! | AGATCAACTATAATCAATTT+CGG | - | chr3.1:32425660-32425679 | None:intergenic | 20.0% |
| !! | ATTATTTATGCTTAGCTAAA+TGG | - | chr3.1:32426601-32426620 | None:intergenic | 20.0% |
| !! | CATTATTTGATGAATTCATT+GGG | + | chr3.1:32427181-32427200 | MS.gene69505:CDS | 20.0% |
| !! | TAGAAAAAAAATTCAGGATA+AGG | + | chr3.1:32425250-32425269 | MS.gene69505:intron | 20.0% |
| !! | TCACCATTATATAAGTTATA+AGG | + | chr3.1:32425274-32425293 | MS.gene69505:intron | 20.0% |
| !! | TCATTATTTGATGAATTCAT+TGG | + | chr3.1:32427180-32427199 | MS.gene69505:CDS | 20.0% |
| !! | TTATAATATTGCAGAATCTA+GGG | + | chr3.1:32426844-32426863 | MS.gene69505:intron | 20.0% |
| !!! | TAAGAAACACCATATTTTTT+TGG | - | chr3.1:32425195-32425214 | None:intergenic | 20.0% |
| !!! | TTATTTTTCTATTGCACTTT+TGG | + | chr3.1:32424669-32424688 | MS.gene69505:intron | 20.0% |
| ! | AAAGGATATTGAGTTTGAAA+CGG | + | chr3.1:32424573-32424592 | MS.gene69505:CDS | 25.0% |
| ! | ATAAGAAAGAAAAAAACCAC+CGG | - | chr3.1:32426283-32426302 | None:intergenic | 25.0% |
| ! | CCAACTTATATTTGACAAAA+TGG | + | chr3.1:32425839-32425858 | MS.gene69505:intron | 25.0% |
| ! | CTATCATTACGTATAAAACA+GGG | - | chr3.1:32425784-32425803 | None:intergenic | 25.0% |
| ! | CTTATAATATTGCAGAATCT+AGG | + | chr3.1:32426843-32426862 | MS.gene69505:intron | 25.0% |
| ! | CTTATATTTGACAAAATGGA+AGG | + | chr3.1:32425843-32425862 | MS.gene69505:intron | 25.0% |
| ! | TAATTCAATCTACCATATGT+TGG | + | chr3.1:32424716-32424735 | MS.gene69505:intron | 25.0% |
| ! | TTCATAACTAAGTTGTAGAT+TGG | - | chr3.1:32426992-32427011 | None:intergenic | 25.0% |
| ! | TTCATCAAATAATGACCAAA+TGG | - | chr3.1:32427175-32427194 | None:intergenic | 25.0% |
| !! | AATGATAGCCAAATTTTTGT+GGG | + | chr3.1:32425796-32425815 | MS.gene69505:intron | 25.0% |
| !! | CAACTTAGTTATGAATCTTT+TGG | + | chr3.1:32426997-32427016 | MS.gene69505:CDS | 25.0% |
| !! | CCATTTTGTCAAATATAAGT+TGG | - | chr3.1:32425842-32425861 | None:intergenic | 25.0% |
| !! | CTGAAAAGTACAAAAATCAA+GGG | + | chr3.1:32426885-32426904 | MS.gene69505:CDS | 25.0% |
| !! | TAATGATAGCCAAATTTTTG+TGG | + | chr3.1:32425795-32425814 | MS.gene69505:intron | 25.0% |
| !! | TTTTATAACATTAGGGAATC+TGG | + | chr3.1:32425752-32425771 | MS.gene69505:intron | 25.0% |
| !!! | ACATGTTTGTTTTATGGATT+TGG | + | chr3.1:32425571-32425590 | MS.gene69505:intron | 25.0% |
| !!! | CTCAACCATTGATTTTAAAT+CGG | - | chr3.1:32425706-32425725 | None:intergenic | 25.0% |
| !!! | TTACACATTTAGTGTTTTGA+TGG | - | chr3.1:32425052-32425071 | None:intergenic | 25.0% |
| AACGTATCTCTCAATTTGTA+AGG | - | chr3.1:32426184-32426203 | None:intergenic | 30.0% | |
| AACTCAAAATAGACACTAGA+GGG | - | chr3.1:32426363-32426382 | None:intergenic | 30.0% | |
| AATAATGACCAAATGGAAGA+TGG | - | chr3.1:32427168-32427187 | None:intergenic | 30.0% | |
| AATACAACAATTTCATCCCT+AGG | - | chr3.1:32426220-32426239 | None:intergenic | 30.0% | |
| ACAAGCATTAGACTTATATG+TGG | - | chr3.1:32426486-32426505 | None:intergenic | 30.0% | |
| AGTTAGGATGAATATATGTG+TGG | - | chr3.1:32425617-32425636 | None:intergenic | 30.0% | |
| ATAAATCTACTCATGAATGC+AGG | - | chr3.1:32426652-32426671 | None:intergenic | 30.0% | |
| ATAACTAAGTTGTAGATTGG+TGG | - | chr3.1:32426989-32427008 | None:intergenic | 30.0% | |
| GATTGTGTGTCTAATTGAAA+AGG | + | chr3.1:32424555-32424574 | MS.gene69505:CDS | 30.0% | |
| GCTATCATTACGTATAAAAC+AGG | - | chr3.1:32425785-32425804 | None:intergenic | 30.0% | |
| TAACTAAGTTGTAGATTGGT+GGG | - | chr3.1:32426988-32427007 | None:intergenic | 30.0% | |
| TAAGGAACACTCTTACAAAT+TGG | - | chr3.1:32426166-32426185 | None:intergenic | 30.0% | |
| TACAGTATAGAAACAAGTGA+AGG | - | chr3.1:32426576-32426595 | None:intergenic | 30.0% | |
| TATGTTGGATTGAATTCGAA+TGG | + | chr3.1:32424731-32424750 | MS.gene69505:intron | 30.0% | |
| TGTGGATGATCTATATGAAT+TGG | - | chr3.1:32426468-32426487 | None:intergenic | 30.0% | |
| TTCAGACTATCTTGATCAAA+CGG | + | chr3.1:32426747-32426766 | MS.gene69505:intron | 30.0% | |
| TTCATTGGGAAAAGAGAATA+TGG | + | chr3.1:32427195-32427214 | MS.gene69505:CDS | 30.0% | |
| TTCGAATTCAATCCAACATA+TGG | - | chr3.1:32424731-32424750 | None:intergenic | 30.0% | |
| ! | ACAAAAAAGGGTTTTCACAA+AGG | - | chr3.1:32425224-32425243 | None:intergenic | 30.0% |
| ! | ATGATAGCCAAATTTTTGTG+GGG | + | chr3.1:32425797-32425816 | MS.gene69505:intron | 30.0% |
| ! | CCTAATGTTATAAAAGCACA+CGG | - | chr3.1:32425747-32425766 | None:intergenic | 30.0% |
| ! | CGTGTGCTTTTATAACATTA+GGG | + | chr3.1:32425745-32425764 | MS.gene69505:intron | 30.0% |
| ! | GAATATCAAACTCGAAGTTT+TGG | - | chr3.1:32426730-32426749 | None:intergenic | 30.0% |
| ! | GCTGAAAAGTACAAAAATCA+AGG | + | chr3.1:32426884-32426903 | MS.gene69505:CDS | 30.0% |
| ! | TGCAGTGCAATTTTACATTT+CGG | - | chr3.1:32425527-32425546 | None:intergenic | 30.0% |
| ! | TTTTATGTACATTATGCTGC+TGG | + | chr3.1:32426621-32426640 | MS.gene69505:intron | 30.0% |
| !! | AAAGGTGTTGGATATTTATG+AGG | + | chr3.1:32427084-32427103 | MS.gene69505:CDS | 30.0% |
| !! | TTACACATAGAATTTTAGCG+TGG | - | chr3.1:32426320-32426339 | None:intergenic | 30.0% |
| !!! | ACCATTGATTTTAAATCGGA+CGG | - | chr3.1:32425702-32425721 | None:intergenic | 30.0% |
| !!! | GCATCTGGTTTTTTACAATT+AGG | + | chr3.1:32425544-32425563 | MS.gene69505:intron | 30.0% |
| !!! | GGCAATACATGTTTGTTTTA+TGG | + | chr3.1:32425565-32425584 | MS.gene69505:intron | 30.0% |
| !!! | TAGTGTCTATTTTGAGTTCA+CGG | + | chr3.1:32426365-32426384 | MS.gene69505:intron | 30.0% |
| !!! | TTTTTGTTGTTCTTCTCTTG+TGG | - | chr3.1:32426084-32426103 | None:intergenic | 30.0% |
| AAGAGAATATGGTAAAGGAG+AGG | + | chr3.1:32427206-32427225 | MS.gene69505:CDS | 35.0% | |
| AATAACAGGGAGTAATCCAA+AGG | - | chr3.1:32426521-32426540 | None:intergenic | 35.0% | |
| ACACATTATGTGTAGAGAAG+TGG | - | chr3.1:32424963-32424982 | None:intergenic | 35.0% | |
| ACATTATGTGTAGAGAAGTG+GGG | - | chr3.1:32424961-32424980 | None:intergenic | 35.0% | |
| ACCAACTAAGCTACACTTAT+GGG | - | chr3.1:32424890-32424909 | None:intergenic | 35.0% | |
| AGTCACCATCTTGAATAACA+GGG | - | chr3.1:32426534-32426553 | None:intergenic | 35.0% | |
| ATAACAGGGAGTAATCCAAA+GGG | - | chr3.1:32426520-32426539 | None:intergenic | 35.0% | |
| ATATTAGCAATAGGCCATCT+TGG | + | chr3.1:32427254-32427273 | MS.gene69505:CDS | 35.0% | |
| ATGACAAGTATCAAGGTGTA+TGG | + | chr3.1:32425875-32425894 | MS.gene69505:intron | 35.0% | |
| ATGCTGACAACGTTAATTCA+TGG | + | chr3.1:32426778-32426797 | MS.gene69505:intron | 35.0% | |
| ATGTAAAATTGCACTGCATC+TGG | + | chr3.1:32425529-32425548 | MS.gene69505:intron | 35.0% | |
| CACAGTTCATGTTTGATCTT+TGG | + | chr3.1:32425434-32425453 | MS.gene69505:intron | 35.0% | |
| CACATTATGTGTAGAGAAGT+GGG | - | chr3.1:32424962-32424981 | None:intergenic | 35.0% | |
| CATTACGTATAAAACAGGGA+TGG | - | chr3.1:32425780-32425799 | None:intergenic | 35.0% | |
| CGAATTTATATCGGACAGTT+AGG | - | chr3.1:32425633-32425652 | None:intergenic | 35.0% | |
| GAAAAAGAACCTGCAACTTA+AGG | - | chr3.1:32424642-32424661 | None:intergenic | 35.0% | |
| GAACTCAAAATAGACACTAG+AGG | - | chr3.1:32426364-32426383 | None:intergenic | 35.0% | |
| GCTATCAAAGACTAAGTACT+TGG | + | chr3.1:32427111-32427130 | MS.gene69505:CDS | 35.0% | |
| GGGAAAAGAGAATATGGTAA+AGG | + | chr3.1:32427201-32427220 | MS.gene69505:CDS | 35.0% | |
| TACCAACTAAGCTACACTTA+TGG | - | chr3.1:32424891-32424910 | None:intergenic | 35.0% | |
| TAGTCACCATCTTGAATAAC+AGG | - | chr3.1:32426535-32426554 | None:intergenic | 35.0% | |
| TGGAAAGACAATAGACGAAA+GGG | + | chr3.1:32426919-32426938 | MS.gene69505:CDS | 35.0% | |
| TGTATGAGTAACACATGTTG+TGG | + | chr3.1:32425914-32425933 | MS.gene69505:intron | 35.0% | |
| TGTTGGATATTTATGAGGAG+AGG | + | chr3.1:32427089-32427108 | MS.gene69505:CDS | 35.0% | |
| TTACTCCCTGTTATTCAAGA+TGG | + | chr3.1:32426526-32426545 | MS.gene69505:CDS | 35.0% | |
| TTCGGACGACGAATTTATAT+CGG | - | chr3.1:32425642-32425661 | None:intergenic | 35.0% | |
| TTGGAAAGACAATAGACGAA+AGG | + | chr3.1:32426918-32426937 | MS.gene69505:CDS | 35.0% | |
| TTTCATTCAATCCATTGAGC+CGG | - | chr3.1:32425132-32425151 | None:intergenic | 35.0% | |
| ! | ACCGTCCGATTTAAAATCAA+TGG | + | chr3.1:32425698-32425717 | MS.gene69505:intron | 35.0% |
| ! | ACTTTTCAGCATAGTACCTT+AGG | - | chr3.1:32426874-32426893 | None:intergenic | 35.0% |
| ! | CACTCTCTTGAACAACTTTT+TGG | - | chr3.1:32427051-32427070 | None:intergenic | 35.0% |
| ! | CCGTGTGCTTTTATAACATT+AGG | + | chr3.1:32425744-32425763 | MS.gene69505:intron | 35.0% |
| ! | TTTGAAACGGTACATGTTGA+TGG | + | chr3.1:32424586-32424605 | MS.gene69505:intron | 35.0% |
| !! | TGAACAACTTTTTGGTCAGA+TGG | - | chr3.1:32427043-32427062 | None:intergenic | 35.0% |
| !!! | TATTTTGAGTTCACGGATGA+GGG | + | chr3.1:32426372-32426391 | MS.gene69505:intron | 35.0% |
| !!! | TTTAGTGTTTTGATGGTCGT+TGG | - | chr3.1:32425045-32425064 | None:intergenic | 35.0% |
| ACAACAATTTCATCCCTAGG+TGG | - | chr3.1:32426217-32426236 | None:intergenic | 40.0% | |
| AGAATATGGTAAAGGAGAGG+AGG | + | chr3.1:32427209-32427228 | MS.gene69505:CDS | 40.0% | |
| CAAGAGAGTGAAGAAAAGCT+TGG | + | chr3.1:32427061-32427080 | MS.gene69505:CDS | 40.0% | |
| CGATAATTGCCACCTTTATG+CGG | + | chr3.1:32424762-32424781 | MS.gene69505:intron | 40.0% | |
| GAGTGAAGAAAAGCTTGGAA+AGG | + | chr3.1:32427066-32427085 | MS.gene69505:CDS | 40.0% | |
| GATAATTGCCACCTTTATGC+GGG | + | chr3.1:32424763-32424782 | MS.gene69505:intron | 40.0% | |
| GATGGTGACTATACTCTCTA+TGG | + | chr3.1:32426544-32426563 | MS.gene69505:CDS | 40.0% | |
| GCATGTGATGACAAGTATCA+AGG | + | chr3.1:32425868-32425887 | MS.gene69505:intron | 40.0% | |
| GGAAAGACAATAGACGAAAG+GGG | + | chr3.1:32426920-32426939 | MS.gene69505:CDS | 40.0% | |
| GGTGGGATGATATTAGCAAT+AGG | + | chr3.1:32427245-32427264 | MS.gene69505:CDS | 40.0% | |
| GTCCTTTATTGAAAACCAGG+TGG | - | chr3.1:32425505-32425524 | None:intergenic | 40.0% | |
| TACATGTAATTTGAGCCACC+TGG | + | chr3.1:32425487-32425506 | MS.gene69505:intron | 40.0% | |
| TACCAGGGATATTATGTGCA+GGG | + | chr3.1:32424913-32424932 | MS.gene69505:intron | 40.0% | |
| TCAAAGACTAAGTACTTGGC+TGG | + | chr3.1:32427115-32427134 | MS.gene69505:CDS | 40.0% | |
| TCCCATAAGTGTAGCTTAGT+TGG | + | chr3.1:32424886-32424905 | MS.gene69505:intron | 40.0% | |
| TCGGTCCTTTATTGAAAACC+AGG | - | chr3.1:32425508-32425527 | None:intergenic | 40.0% | |
| TGTAGAACCTTCTTCCAAGA+TGG | - | chr3.1:32427271-32427290 | None:intergenic | 40.0% | |
| TTCACGGATGAGGGAAATTA+TGG | + | chr3.1:32426381-32426400 | MS.gene69505:intron | 40.0% | |
| ! | AGAAAAGCTTGGAAAGGTGT+TGG | + | chr3.1:32427072-32427091 | MS.gene69505:CDS | 40.0% |
| ! | AGCTGAATACCTTAAGTTGC+AGG | + | chr3.1:32424630-32424649 | MS.gene69505:intron | 40.0% |
| ! | CAATTTGGAATCCATTGAGC+CGG | - | chr3.1:32425102-32425121 | None:intergenic | 40.0% |
| ! | GCATATAGGTGGGTGTTTTT+AGG | + | chr3.1:32424788-32424807 | MS.gene69505:intron | 40.0% |
| ! | TCAAATATAAGTTGGCCACG+TGG | - | chr3.1:32425834-32425853 | None:intergenic | 40.0% |
| !! | AATCAAGGGACTGATTTGCT+TGG | + | chr3.1:32426899-32426918 | MS.gene69505:CDS | 40.0% |
| !! | AGATTGGTGGGTTGAAGTTA+TGG | - | chr3.1:32426976-32426995 | None:intergenic | 40.0% |
| !! | AGCCACCTGGTTTTCAATAA+AGG | + | chr3.1:32425500-32425519 | MS.gene69505:intron | 40.0% |
| !! | GATTCCAAATTGACTTGAGC+CGG | + | chr3.1:32425110-32425129 | MS.gene69505:intron | 40.0% |
| !! | GATTGGTGGGTTGAAGTTAT+GGG | - | chr3.1:32426975-32426994 | None:intergenic | 40.0% |
| !! | GTACATGTTGATGGCTTCAA+GGG | + | chr3.1:32424595-32424614 | MS.gene69505:intron | 40.0% |
| !! | TGATCCAAATTGACTTGAGC+CGG | + | chr3.1:32425080-32425099 | MS.gene69505:intron | 40.0% |
| !! | TGTGTCGATTCTCACAAATG+CGG | + | chr3.1:32425300-32425319 | MS.gene69505:intron | 40.0% |
| !!! | CACTTGGTGTTTTGCATGAA+AGG | + | chr3.1:32425985-32426004 | MS.gene69505:intron | 40.0% |
| !!! | CTATTTTGAGTTCACGGATG+AGG | + | chr3.1:32426371-32426390 | MS.gene69505:intron | 40.0% |
| !!! | CTTTTGGTTTACCCACTAGT+GGG | + | chr3.1:32427013-32427032 | MS.gene69505:CDS | 40.0% |
| !!! | TATAGGTGGGTGTTTTTAGG+CGG | + | chr3.1:32424791-32424810 | MS.gene69505:intron | 40.0% |
| !!! | TCTTTTGGTTTACCCACTAG+TGG | + | chr3.1:32427012-32427031 | MS.gene69505:CDS | 40.0% |
| AATAGACGAAAGGGGTCTTG+TGG | + | chr3.1:32426928-32426947 | MS.gene69505:CDS | 45.0% | |
| ACCAGGGATATTATGTGCAG+GGG | + | chr3.1:32424914-32424933 | MS.gene69505:intron | 45.0% | |
| ACGGATGAGGGAAATTATGG+AGG | + | chr3.1:32426384-32426403 | MS.gene69505:intron | 45.0% | |
| AGACACACAATCACCCGTTT+CGG | - | chr3.1:32424547-32424566 | None:intergenic | 45.0% | |
| CAAGGTGTATGGTGTACAGT+TGG | + | chr3.1:32425886-32425905 | MS.gene69505:intron | 45.0% | |
| CAATAGGCCATCTTGGAAGA+AGG | + | chr3.1:32427261-32427280 | MS.gene69505:CDS | 45.0% | |
| CATGCATTGCAAGAGACACA+CGG | + | chr3.1:32425939-32425958 | MS.gene69505:intron | 45.0% | |
| CATTCATTGCAAGGGACACT+TGG | + | chr3.1:32425969-32425988 | MS.gene69505:intron | 45.0% | |
| CTACCAGGGATATTATGTGC+AGG | + | chr3.1:32424912-32424931 | MS.gene69505:intron | 45.0% | |
| GACCAAATGGAAGATGGCTA+AGG | - | chr3.1:32427162-32427181 | None:intergenic | 45.0% | |
| GACCTTAGCCATCTTCCATT+TGG | + | chr3.1:32427157-32427176 | MS.gene69505:CDS | 45.0% | |
| GGATGGACCCCACAAAAATT+TGG | - | chr3.1:32425807-32425826 | None:intergenic | 45.0% | |
| GTAATCCAAAGGGCTGCATA+TGG | - | chr3.1:32426510-32426529 | None:intergenic | 45.0% | |
| GTTGTAGTGAGATCCACCTA+GGG | + | chr3.1:32426201-32426220 | MS.gene69505:intron | 45.0% | |
| TTGTTCCATATGCAGCCCTT+TGG | + | chr3.1:32426502-32426521 | MS.gene69505:intron | 45.0% | |
| ! | CAGAATCTAGGGCAATCCTA+AGG | + | chr3.1:32426855-32426874 | MS.gene69505:intron | 45.0% |
| ! | GTTTAAGACGCTCAAGAGTC+CGG | + | chr3.1:32426261-32426280 | MS.gene69505:intron | 45.0% |
| !! | AGCTTAGTTGGTAGCTACCA+GGG | + | chr3.1:32424898-32424917 | MS.gene69505:intron | 45.0% |
| !! | ATTTTGGTCAGGTAGCCTAG+TGG | - | chr3.1:32424996-32425015 | None:intergenic | 45.0% |
| !! | GGTACATGTTGATGGCTTCA+AGG | + | chr3.1:32424594-32424613 | MS.gene69505:intron | 45.0% |
| !! | TAGCTTAGTTGGTAGCTACC+AGG | + | chr3.1:32424897-32424916 | MS.gene69505:intron | 45.0% |
| !!! | AATGATATATATATATATTT+TGG | - | chr3.1:32425012-32425031 | None:intergenic | 5.0% |
| !!! | AATGATATATATTTTAAATT+TGG | - | chr3.1:32424864-32424883 | None:intergenic | 5.0% |
| AATTGCCACCTTTATGCGGG+TGG | + | chr3.1:32424766-32424785 | MS.gene69505:intron | 50.0% | |
| ACCCCTGCACATAATATCCC+TGG | - | chr3.1:32424918-32424937 | None:intergenic | 50.0% | |
| AGACTATGCATGCCCGAAAC+GGG | + | chr3.1:32424531-32424550 | MS.gene69505:CDS | 50.0% | |
| ATATGCCACCCGCATAAAGG+TGG | - | chr3.1:32424774-32424793 | None:intergenic | 50.0% | |
| ATTGCAAGAGACACACGGTG+CGG | + | chr3.1:32425944-32425963 | MS.gene69505:intron | 50.0% | |
| CAGACTATGCATGCCCGAAA+CGG | + | chr3.1:32424530-32424549 | MS.gene69505:CDS | 50.0% | |
| CAGATGGAAGTCCCACTAGT+GGG | - | chr3.1:32427027-32427046 | None:intergenic | 50.0% | |
| CCTATATGCCACCCGCATAA+AGG | - | chr3.1:32424777-32424796 | None:intergenic | 50.0% | |
| CCTTTATGCGGGTGGCATAT+AGG | + | chr3.1:32424774-32424793 | MS.gene69505:intron | 50.0% | |
| CGTTGTAGTGAGATCCACCT+AGG | + | chr3.1:32426200-32426219 | MS.gene69505:intron | 50.0% | |
| GAAGATGGCTAAGGTCAGCA+AGG | - | chr3.1:32427153-32427172 | None:intergenic | 50.0% | |
| GACACACAATCACCCGTTTC+GGG | - | chr3.1:32424546-32424565 | None:intergenic | 50.0% | |
| GAGGCATGTGAATGCTTGGT+GGG | + | chr3.1:32427228-32427247 | MS.gene69505:CDS | 50.0% | |
| GATATTATGTGCAGGGGTCG+GGG | + | chr3.1:32424920-32424939 | MS.gene69505:intron | 50.0% | |
| GGATATTATGTGCAGGGGTC+GGG | + | chr3.1:32424919-32424938 | MS.gene69505:intron | 50.0% | |
| GGGATATTATGTGCAGGGGT+CGG | + | chr3.1:32424918-32424937 | MS.gene69505:intron | 50.0% | |
| GTGCGGTGCATTCATTGCAA+GGG | + | chr3.1:32425961-32425980 | MS.gene69505:intron | 50.0% | |
| GTGTAGAGAAGTGGGGAATC+CGG | - | chr3.1:32424954-32424973 | None:intergenic | 50.0% | |
| GTTTCGGGCATGCATAGTCT+GGG | - | chr3.1:32424531-32424550 | None:intergenic | 50.0% | |
| TATGCGGGTGGCATATAGGT+GGG | + | chr3.1:32424778-32424797 | MS.gene69505:intron | 50.0% | |
| TCAGATGGAAGTCCCACTAG+TGG | - | chr3.1:32427028-32427047 | None:intergenic | 50.0% | |
| TGTAGAGAAGTGGGGAATCC+GGG | - | chr3.1:32424953-32424972 | None:intergenic | 50.0% | |
| TGTGTGTGAGTCTAGCCACT+AGG | + | chr3.1:32424978-32424997 | MS.gene69505:intron | 50.0% | |
| TTATGCGGGTGGCATATAGG+TGG | + | chr3.1:32424777-32424796 | MS.gene69505:intron | 50.0% | |
| ! | AAAGGGGTCTTGTGGAGCAA+TGG | + | chr3.1:32426936-32426955 | MS.gene69505:CDS | 50.0% |
| ! | AGAGGAGGCATGTGAATGCT+TGG | + | chr3.1:32427224-32427243 | MS.gene69505:CDS | 50.0% |
| ! | ATAAGTTGGCCACGTGGCAT+TGG | - | chr3.1:32425828-32425847 | None:intergenic | 50.0% |
| ! | TGAGCCGGCTCAAGTCAATT+TGG | - | chr3.1:32425087-32425106 | None:intergenic | 50.0% |
| !! | ATTGACTTGAGCCGGCTCAA+TGG | + | chr3.1:32425088-32425107 | MS.gene69505:intron | 50.0% |
| CGTTTCGGGCATGCATAGTC+TGG | - | chr3.1:32424532-32424551 | None:intergenic | 55.0% | |
| GGTGCGGTGCATTCATTGCA+AGG | + | chr3.1:32425960-32425979 | MS.gene69505:intron | 55.0% | |
| GTAGAGAAGTGGGGAATCCG+GGG | - | chr3.1:32424952-32424971 | None:intergenic | 55.0% | |
| TAAGACGCTCAAGAGTCCGG+TGG | + | chr3.1:32426264-32426283 | MS.gene69505:intron | 55.0% | |
| ! | GGAGGCATGTGAATGCTTGG+TGG | + | chr3.1:32427227-32427246 | MS.gene69505:CDS | 55.0% |
| ! | TGGCTTCAAGGGAGAGCACA+AGG | + | chr3.1:32424606-32424625 | MS.gene69505:intron | 55.0% |
| ! | GTTGGCCACGTGGCATTGGA+TGG | - | chr3.1:32425824-32425843 | None:intergenic | 60.0% |
| GGGGTCCATCCAATGCCACG+TGG | + | chr3.1:32425816-32425835 | MS.gene69505:intron | 65.0% | |
| AGGGGTCGGGGTTCGAACCC+CGG | + | chr3.1:32424932-32424951 | MS.gene69505:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 32424508 | 32427312 | 32424508 | ID=MS.gene69505 |
| chr3.1 | mRNA | 32424508 | 32427312 | 32424508 | ID=MS.gene69505.t1;Parent=MS.gene69505 |
| chr3.1 | exon | 32424508 | 32424594 | 32424508 | ID=MS.gene69505.t1.exon1;Parent=MS.gene69505.t1 |
| chr3.1 | CDS | 32424508 | 32424594 | 32424508 | ID=cds.MS.gene69505.t1;Parent=MS.gene69505.t1 |
| chr3.1 | exon | 32426517 | 32426565 | 32426517 | ID=MS.gene69505.t1.exon2;Parent=MS.gene69505.t1 |
| chr3.1 | CDS | 32426517 | 32426565 | 32426517 | ID=cds.MS.gene69505.t1;Parent=MS.gene69505.t1 |
| chr3.1 | exon | 32426858 | 32427312 | 32426858 | ID=MS.gene69505.t1.exon3;Parent=MS.gene69505.t1 |
| chr3.1 | CDS | 32426858 | 32427312 | 32426858 | ID=cds.MS.gene69505.t1;Parent=MS.gene69505.t1 |
| Gene Sequence |
| Protein sequence |
