Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48032.t1 | XP_003617377.1 | 98.1 | 215 | 4 | 0 | 1 | 215 | 1 | 215 | 2.60E-119 | 438 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48032.t1 | O80852 | 62.5 | 216 | 78 | 2 | 1 | 215 | 1 | 214 | 3.6e-77 | 289.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48032.t1 | G7K3B1 | 98.1 | 215 | 4 | 0 | 1 | 215 | 1 | 215 | 1.9e-119 | 438.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene019181 | MS.gene48032 | PPI |
| MS.gene048797 | MS.gene48032 | PPI |
| MS.gene017060 | MS.gene48032 | PPI |
| MS.gene019183 | MS.gene48032 | PPI |
| MS.gene22195 | MS.gene48032 | PPI |
| MS.gene03034 | MS.gene48032 | PPI |
| MS.gene048743 | MS.gene48032 | PPI |
| MS.gene69499 | MS.gene48032 | PPI |
| MS.gene22188 | MS.gene48032 | PPI |
| MS.gene000510 | MS.gene48032 | PPI |
| MS.gene47714 | MS.gene48032 | PPI |
| MS.gene22196 | MS.gene48032 | PPI |
| MS.gene049706 | MS.gene48032 | PPI |
| MS.gene030405 | MS.gene48032 | PPI |
| MS.gene48030 | MS.gene48032 | PPI |
| MS.gene048703 | MS.gene48032 | PPI |
| MS.gene69505 | MS.gene48032 | PPI |
| MS.gene04976 | MS.gene48032 | PPI |
| MS.gene017062 | MS.gene48032 | PPI |
| MS.gene049699 | MS.gene48032 | PPI |
| MS.gene05016 | MS.gene48032 | PPI |
| MS.gene038277 | MS.gene48032 | PPI |
| MS.gene005621 | MS.gene48032 | PPI |
| MS.gene72151 | MS.gene48032 | PPI |
| MS.gene008337 | MS.gene48032 | PPI |
| MS.gene83384 | MS.gene48032 | PPI |
| MS.gene20711 | MS.gene48032 | PPI |
| MS.gene07192 | MS.gene48032 | PPI |
| MS.gene008334 | MS.gene48032 | PPI |
| MS.gene008278 | MS.gene48032 | PPI |
| MS.gene061566 | MS.gene48032 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48032.t1 | MTR_5g090920 | 97.685 | 216 | 5 | 0 | 1 | 216 | 1 | 216 | 3.02e-156 | 431 |
| MS.gene48032.t1 | MTR_5g090910 | 88.372 | 215 | 25 | 0 | 1 | 215 | 1 | 215 | 8.51e-142 | 395 |
| MS.gene48032.t1 | MTR_3g450930 | 71.296 | 216 | 59 | 2 | 1 | 215 | 1 | 214 | 4.14e-111 | 317 |
| MS.gene48032.t1 | MTR_3g450790 | 70.507 | 217 | 61 | 2 | 1 | 216 | 1 | 215 | 2.73e-110 | 315 |
| MS.gene48032.t1 | MTR_5g090910 | 86.093 | 151 | 21 | 0 | 65 | 215 | 8 | 158 | 3.54e-94 | 272 |
| MS.gene48032.t1 | MTR_3g064700 | 54.630 | 216 | 92 | 4 | 1 | 213 | 1 | 213 | 5.82e-79 | 236 |
| MS.gene48032.t1 | MTR_1g026140 | 45.000 | 220 | 112 | 5 | 3 | 215 | 5 | 222 | 7.99e-61 | 190 |
| MS.gene48032.t1 | MTR_1g088850 | 44.550 | 211 | 113 | 4 | 1 | 209 | 1 | 209 | 1.54e-57 | 181 |
| MS.gene48032.t1 | MTR_1g088840 | 41.981 | 212 | 118 | 4 | 2 | 211 | 3 | 211 | 1.81e-54 | 173 |
| MS.gene48032.t1 | MTR_1g088825 | 41.981 | 212 | 118 | 4 | 2 | 211 | 3 | 211 | 1.81e-54 | 173 |
| MS.gene48032.t1 | MTR_1g088845 | 42.453 | 212 | 117 | 4 | 2 | 211 | 3 | 211 | 3.04e-51 | 165 |
| MS.gene48032.t1 | MTR_1g088840 | 42.169 | 166 | 92 | 3 | 47 | 211 | 2 | 164 | 9.33e-42 | 139 |
| MS.gene48032.t1 | MTR_1g088840 | 44.348 | 115 | 60 | 3 | 98 | 211 | 4 | 115 | 1.64e-26 | 99.0 |
| MS.gene48032.t1 | MTR_1g492670 | 45.455 | 66 | 35 | 1 | 146 | 211 | 2 | 66 | 5.63e-14 | 64.7 |
| MS.gene48032.t1 | MTR_8g098420 | 27.746 | 173 | 118 | 5 | 1 | 168 | 1 | 171 | 1.24e-11 | 61.6 |
| MS.gene48032.t1 | MTR_8g098420 | 27.746 | 173 | 118 | 5 | 1 | 168 | 1 | 171 | 2.46e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48032.t1 | AT2G30860 | 62.212 | 217 | 79 | 2 | 1 | 216 | 1 | 215 | 8.96e-100 | 288 |
| MS.gene48032.t1 | AT2G30870 | 58.065 | 217 | 88 | 2 | 1 | 216 | 1 | 215 | 3.18e-89 | 262 |
| MS.gene48032.t1 | AT3G03190 | 48.357 | 213 | 106 | 3 | 1 | 211 | 1 | 211 | 6.39e-67 | 205 |
| MS.gene48032.t1 | AT2G30860 | 60.645 | 155 | 58 | 2 | 1 | 154 | 1 | 153 | 3.20e-64 | 196 |
| MS.gene48032.t1 | AT5G17220 | 44.340 | 212 | 116 | 2 | 1 | 211 | 1 | 211 | 1.44e-61 | 191 |
| MS.gene48032.t1 | AT3G62760 | 46.190 | 210 | 109 | 4 | 1 | 208 | 1 | 208 | 1.47e-61 | 192 |
| MS.gene48032.t1 | AT2G47730 | 41.706 | 211 | 119 | 4 | 5 | 213 | 54 | 262 | 2.50e-55 | 177 |
| MS.gene48032.t1 | AT2G47730 | 41.706 | 211 | 119 | 4 | 5 | 213 | 54 | 262 | 2.50e-55 | 177 |
| MS.gene48032.t1 | AT1G02930 | 41.346 | 208 | 118 | 4 | 3 | 209 | 4 | 208 | 9.98e-50 | 161 |
| MS.gene48032.t1 | AT1G02930 | 41.346 | 208 | 118 | 4 | 3 | 209 | 4 | 208 | 9.98e-50 | 161 |
| MS.gene48032.t1 | AT4G02520 | 40.952 | 210 | 118 | 4 | 3 | 208 | 4 | 211 | 2.43e-49 | 160 |
| MS.gene48032.t1 | AT1G02920 | 41.827 | 208 | 118 | 3 | 3 | 209 | 4 | 209 | 5.65e-49 | 159 |
| MS.gene48032.t1 | AT2G02930 | 41.232 | 211 | 118 | 4 | 3 | 209 | 4 | 212 | 1.33e-48 | 158 |
| MS.gene48032.t1 | AT1G02950 | 41.176 | 204 | 116 | 4 | 4 | 205 | 26 | 227 | 1.01e-46 | 154 |
| MS.gene48032.t1 | AT1G02950 | 41.176 | 204 | 116 | 4 | 4 | 205 | 26 | 227 | 1.01e-46 | 154 |
| MS.gene48032.t1 | AT1G02950 | 41.176 | 204 | 116 | 4 | 4 | 205 | 28 | 229 | 1.18e-46 | 154 |
| MS.gene48032.t1 | AT1G02950 | 41.176 | 204 | 116 | 4 | 4 | 205 | 38 | 239 | 1.52e-46 | 154 |
| MS.gene48032.t1 | AT1G49860 | 40.476 | 210 | 112 | 5 | 9 | 209 | 9 | 214 | 2.24e-43 | 146 |
| MS.gene48032.t1 | AT1G02940 | 37.143 | 210 | 128 | 4 | 4 | 211 | 40 | 247 | 4.35e-43 | 145 |
| MS.gene48032.t1 | AT1G02940 | 37.143 | 210 | 128 | 4 | 4 | 211 | 40 | 247 | 4.35e-43 | 145 |
| MS.gene48032.t1 | AT1G02940 | 37.143 | 210 | 128 | 4 | 4 | 211 | 53 | 260 | 7.03e-43 | 145 |
| MS.gene48032.t1 | AT1G02940 | 37.143 | 210 | 128 | 4 | 4 | 211 | 65 | 272 | 7.23e-43 | 145 |
| MS.gene48032.t1 | AT1G02950 | 38.889 | 144 | 85 | 3 | 63 | 205 | 60 | 201 | 1.02e-26 | 102 |
| MS.gene48032.t1 | AT2G02390 | 40.299 | 67 | 40 | 0 | 11 | 77 | 18 | 84 | 1.59e-11 | 61.6 |
| MS.gene48032.t1 | AT2G02380 | 38.806 | 67 | 41 | 0 | 11 | 77 | 21 | 87 | 3.24e-11 | 61.2 |
| MS.gene48032.t1 | AT2G02390 | 40.299 | 67 | 40 | 0 | 11 | 77 | 18 | 84 | 3.75e-11 | 60.8 |
| MS.gene48032.t1 | AT5G41240 | 29.885 | 174 | 113 | 5 | 1 | 168 | 1 | 171 | 4.39e-11 | 62.0 |
Find 53 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATTATATTGTTAATAATA+TGG | 0.137099 | 5.2:+76938634 | MS.gene48032:CDS |
| TCACCCTTCAAAACATTAAT+AGG | 0.170561 | 5.2:-76937525 | None:intergenic |
| GATGGAGACTATACCCTTTA+TGG | 0.175031 | 5.2:+76937698 | MS.gene48032:CDS |
| GGGGAAAGATTATTTGATTA+AGG | 0.243823 | 5.2:+76938655 | MS.gene48032:CDS |
| GTTATCAAAGAGCAAGTATT+TGG | 0.269787 | 5.2:+76938565 | MS.gene48032:CDS |
| GTTCATAATCTGCAGCCTTT+TGG | 0.308479 | 5.2:+76937656 | MS.gene48032:intron |
| GCTTACAACTTGATCATTCA+TGG | 0.312434 | 5.2:+76938443 | MS.gene48032:CDS |
| TCACTCTCTTCAATTACCTT+TGG | 0.317783 | 5.2:-76938503 | None:intergenic |
| GTCAAGATGTTTAACCATAA+AGG | 0.320171 | 5.2:-76937712 | None:intergenic |
| TTCCCTTCACTACTAGTTGA+TGG | 0.324654 | 5.2:+76938470 | MS.gene48032:CDS |
| AACATGGTAGTGAAGGTTTA+TGG | 0.332703 | 5.2:+76937432 | None:intergenic |
| TTAACAATATAATCAGTAAA+TGG | 0.341163 | 5.2:-76938626 | None:intergenic |
| GATTATATTGTTAATAATAT+GGG | 0.363367 | 5.2:+76938635 | MS.gene48032:CDS |
| CACCCTTCAAAACATTAATA+GGG | 0.374837 | 5.2:-76937524 | None:intergenic |
| TCCTGAGTACCTCAAATTAC+AGG | 0.384618 | 5.2:+76937557 | MS.gene48032:CDS |
| AGGAAAGACAATAGAAGAAA+AGG | 0.389428 | 5.2:+76938370 | MS.gene48032:CDS |
| CATCTATTTGTGCAGAGTCT+AGG | 0.392209 | 5.2:+76938294 | MS.gene48032:intron |
| TCTTCAATTACCTTTGGATC+TGG | 0.393161 | 5.2:-76938497 | None:intergenic |
| AATGTTCCTGTTATTAAAGA+TGG | 0.393639 | 5.2:+76937680 | MS.gene48032:CDS |
| TAGTCTCCATCTTTAATAAC+AGG | 0.407930 | 5.2:-76937686 | None:intergenic |
| TCAAGATGTTTAACCATAAA+GGG | 0.413133 | 5.2:-76937711 | None:intergenic |
| TGAAGAGAGTGAAGCAAAGT+TGG | 0.427269 | 5.2:+76938514 | MS.gene48032:CDS |
| TGAGAAGGAAATCGAATTTG+AGG | 0.448439 | 5.2:+76937497 | MS.gene48032:CDS |
| ATCTATTTGTGCAGAGTCTA+GGG | 0.458363 | 5.2:+76938295 | MS.gene48032:intron |
| AAAGATGAACCTGTAATTTG+AGG | 0.461022 | 5.2:-76937566 | None:intergenic |
| AAGACAAACCAACACACGTT+TGG | 0.462369 | 5.2:-76937472 | None:intergenic |
| GGAAAGACAATAGAAGAAAA+GGG | 0.480576 | 5.2:+76938371 | MS.gene48032:CDS |
| ATAACAGGAACATTTCCAAA+AGG | 0.493720 | 5.2:-76937671 | None:intergenic |
| ACGTTTGGCTGAGGCACAGT+GGG | 0.494854 | 5.2:-76937457 | None:intergenic |
| TCAAAGAGCAAGTATTTGGC+TGG | 0.510050 | 5.2:+76938569 | MS.gene48032:CDS |
| TGTTGAACATTTATGAAGAG+AGG | 0.513838 | 5.2:+76938543 | MS.gene48032:CDS |
| GTTGGTTTGTCTTGTTGAGA+AGG | 0.538282 | 5.2:+76937482 | MS.gene48032:CDS |
| TCACAAGGGGTTGAGTTGCT+AGG | 0.539500 | 5.2:+76938350 | MS.gene48032:CDS |
| ACCTGTAATTTGAGGTACTC+AGG | 0.541034 | 5.2:-76937558 | None:intergenic |
| AAGATTATTTGATTAAGGAG+AGG | 0.552057 | 5.2:+76938660 | MS.gene48032:CDS |
| GTGCCATCAACTAGTAGTGA+AGG | 0.552925 | 5.2:-76938473 | None:intergenic |
| ATTATATTGTTAATAATATG+GGG | 0.570271 | 5.2:+76938636 | MS.gene48032:CDS |
| AAACCAAAACATGGTAGTGA+AGG | 0.575055 | 5.2:+76937425 | None:intergenic |
| AAAAGGGTCTTGTGGAACAA+TGG | 0.581223 | 5.2:+76938387 | MS.gene48032:CDS |
| AACCAACACACGTTTGGCTG+AGG | 0.583408 | 5.2:-76937466 | None:intergenic |
| TGCCTCAGCCAAACGTGTGT+TGG | 0.583612 | 5.2:+76937464 | MS.gene48032:CDS |
| AATAGAAGAAAAGGGTCTTG+TGG | 0.583687 | 5.2:+76938379 | MS.gene48032:CDS |
| CAATATAATCAGTAAATGGA+AGG | 0.596823 | 5.2:-76938622 | None:intergenic |
| TGAGTTATATAGACCTCCAA+CGG | 0.602410 | 5.2:+76938742 | MS.gene48032:CDS |
| TGATGGCACTCCAGATCCAA+AGG | 0.616475 | 5.2:+76938487 | MS.gene48032:CDS |
| TGAATGATCAAGTTGTAAGC+TGG | 0.624569 | 5.2:-76938440 | None:intergenic |
| CACGTTTGGCTGAGGCACAG+TGG | 0.626355 | 5.2:-76937458 | None:intergenic |
| TGCCATCAACTAGTAGTGAA+GGG | 0.633206 | 5.2:-76938472 | None:intergenic |
| ATATAAGTAGTAGACCATCA+TGG | 0.637766 | 5.2:+76938708 | MS.gene48032:CDS |
| ATGATCAAGTTGTAAGCTGG+TGG | 0.646810 | 5.2:-76938437 | None:intergenic |
| GAAGGTGACTTATATCAGCA+AGG | 0.657717 | 5.2:-76938604 | None:intergenic |
| TGATCAAGTTGTAAGCTGGT+GGG | 0.684135 | 5.2:-76938436 | None:intergenic |
| CGTTTGGCTGAGGCACAGTG+GGG | 0.742956 | 5.2:-76937456 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAATTTATTTTTATTTT+CGG | - | chr5.2:76937963-76937982 | None:intergenic | 0.0% |
| !! | ATTATATTGTTAATAATATG+GGG | + | chr5.2:76938636-76938655 | MS.gene48032:CDS | 10.0% |
| !! | GATTATATTGTTAATAATAT+GGG | + | chr5.2:76938635-76938654 | MS.gene48032:CDS | 10.0% |
| !! | TGATTATATTGTTAATAATA+TGG | + | chr5.2:76938634-76938653 | MS.gene48032:CDS | 10.0% |
| !!! | TTTTGTTGTATTAAAATTAA+GGG | - | chr5.2:76938178-76938197 | None:intergenic | 10.0% |
| !!! | TTTTTGTTGTATTAAAATTA+AGG | - | chr5.2:76938179-76938198 | None:intergenic | 10.0% |
| !! | TTAACAATATAATCAGTAAA+TGG | - | chr5.2:76938629-76938648 | None:intergenic | 15.0% |
| !!! | TTGTTTTCAACTTATTTTTT+TGG | + | chr5.2:76938070-76938089 | MS.gene48032:intron | 15.0% |
| !! | AAAATATATAAACCGCAATA+AGG | + | chr5.2:76937988-76938007 | MS.gene48032:intron | 20.0% |
| !! | TGAAAAAACAAGAATTAGAA+AGG | - | chr5.2:76937749-76937768 | None:intergenic | 20.0% |
| !! | TGAAAACATAAAAATCAGTA+AGG | - | chr5.2:76938276-76938295 | None:intergenic | 20.0% |
| !! | TTTAGTATATGTTTGATACT+AGG | - | chr5.2:76937888-76937907 | None:intergenic | 20.0% |
| !!! | ACCTTGTTAATTTTGTAAAA+CGG | - | chr5.2:76937842-76937861 | None:intergenic | 20.0% |
| !!! | TTTCAACTTATTTTTTTGGA+AGG | + | chr5.2:76938074-76938093 | MS.gene48032:intron | 20.0% |
| ! | AAGATTATTTGATTAAGGAG+AGG | + | chr5.2:76938660-76938679 | MS.gene48032:CDS | 25.0% |
| ! | AATGTTCCTGTTATTAAAGA+TGG | + | chr5.2:76937680-76937699 | MS.gene48032:CDS | 25.0% |
| ! | AGAAAAATATAGATCACAAG+GGG | + | chr5.2:76938337-76938356 | MS.gene48032:CDS | 25.0% |
| ! | AGATTATGAACAAAGTACAT+GGG | - | chr5.2:76937647-76937666 | None:intergenic | 25.0% |
| ! | CAATATAATCAGTAAATGGA+AGG | - | chr5.2:76938625-76938644 | None:intergenic | 25.0% |
| ! | CAGAAAAATATAGATCACAA+GGG | + | chr5.2:76938336-76938355 | MS.gene48032:CDS | 25.0% |
| ! | GATCCTTGAAAAAAAAATGT+AGG | - | chr5.2:76938141-76938160 | None:intergenic | 25.0% |
| ! | GTAATAGCATAAGATTCAAT+AGG | - | chr5.2:76938254-76938273 | None:intergenic | 25.0% |
| ! | TCAAGATGTTTAACCATAAA+GGG | - | chr5.2:76937714-76937733 | None:intergenic | 25.0% |
| ! | TTGTATTAAAATTAAGGGCA+AGG | - | chr5.2:76938173-76938192 | None:intergenic | 25.0% |
| !! | AATTAGAAAGGCATAACATA+GGG | - | chr5.2:76937737-76937756 | None:intergenic | 25.0% |
| !! | ACCGTTTTACAAAATTAACA+AGG | + | chr5.2:76937838-76937857 | MS.gene48032:intron | 25.0% |
| !! | ACTCAATTTATTCTAGAAGA+AGG | - | chr5.2:76938118-76938137 | None:intergenic | 25.0% |
| !! | TTGTTAATTTTGTAAAACGG+TGG | - | chr5.2:76937839-76937858 | None:intergenic | 25.0% |
| !!! | AGTCCTACATTTTTTTTTCA+AGG | + | chr5.2:76938135-76938154 | MS.gene48032:intron | 25.0% |
| !!! | TTTTTTTTCAAGGATCACAA+TGG | + | chr5.2:76938145-76938164 | MS.gene48032:intron | 25.0% |
| AAAGATGAACCTGTAATTTG+AGG | - | chr5.2:76937569-76937588 | None:intergenic | 30.0% | |
| AGGAAAGACAATAGAAGAAA+AGG | + | chr5.2:76938370-76938389 | MS.gene48032:CDS | 30.0% | |
| ATAACAGGAACATTTCCAAA+AGG | - | chr5.2:76937674-76937693 | None:intergenic | 30.0% | |
| ATATAAGTAGTAGACCATCA+TGG | + | chr5.2:76938708-76938727 | MS.gene48032:CDS | 30.0% | |
| CACCCTTCAAAACATTAATA+GGG | - | chr5.2:76937527-76937546 | None:intergenic | 30.0% | |
| CAGATTATGAACAAAGTACA+TGG | - | chr5.2:76937648-76937667 | None:intergenic | 30.0% | |
| GCAGAAAAATATAGATCACA+AGG | + | chr5.2:76938335-76938354 | MS.gene48032:CDS | 30.0% | |
| GGAAAGACAATAGAAGAAAA+GGG | + | chr5.2:76938371-76938390 | MS.gene48032:CDS | 30.0% | |
| GGGGAAAGATTATTTGATTA+AGG | + | chr5.2:76938655-76938674 | MS.gene48032:CDS | 30.0% | |
| GTCAAGATGTTTAACCATAA+AGG | - | chr5.2:76937715-76937734 | None:intergenic | 30.0% | |
| GTTATCAAAGAGCAAGTATT+TGG | + | chr5.2:76938565-76938584 | MS.gene48032:CDS | 30.0% | |
| TAGTCTCCATCTTTAATAAC+AGG | - | chr5.2:76937689-76937708 | None:intergenic | 30.0% | |
| TATATAAACCGCAATAAGGT+AGG | + | chr5.2:76937992-76938011 | MS.gene48032:intron | 30.0% | |
| TCACCCTTCAAAACATTAAT+AGG | - | chr5.2:76937528-76937547 | None:intergenic | 30.0% | |
| TGTTGAACATTTATGAAGAG+AGG | + | chr5.2:76938543-76938562 | MS.gene48032:CDS | 30.0% | |
| ! | GAATTAGAAAGGCATAACAT+AGG | - | chr5.2:76937738-76937757 | None:intergenic | 30.0% |
| ! | GATCTATCTCCAATTTTATC+CGG | - | chr5.2:76938025-76938044 | None:intergenic | 30.0% |
| ! | TCAAGAATTTTGTTCCATGA+TGG | - | chr5.2:76938725-76938744 | None:intergenic | 30.0% |
| !! | ATTTTAAGGGAAGGAACAAA+AGG | - | chr5.2:76937772-76937791 | None:intergenic | 30.0% |
| !! | GTCCCTATTAATGTTTTGAA+GGG | + | chr5.2:76937522-76937541 | MS.gene48032:CDS | 30.0% |
| !! | TGTCCCTATTAATGTTTTGA+AGG | + | chr5.2:76937521-76937540 | MS.gene48032:CDS | 30.0% |
| AATAGAAGAAAAGGGTCTTG+TGG | + | chr5.2:76938379-76938398 | MS.gene48032:CDS | 35.0% | |
| AGAGGAAAAATGTAAGTGCT+TGG | + | chr5.2:76938678-76938697 | MS.gene48032:CDS | 35.0% | |
| AGGATAGATTCCAAGAATCA+TGG | - | chr5.2:76937868-76937887 | None:intergenic | 35.0% | |
| ATCTATTTGTGCAGAGTCTA+GGG | + | chr5.2:76938295-76938314 | MS.gene48032:intron | 35.0% | |
| GAAAAATGTAAGTGCTTGGT+GGG | + | chr5.2:76938682-76938701 | MS.gene48032:CDS | 35.0% | |
| GCTTACAACTTGATCATTCA+TGG | + | chr5.2:76938443-76938462 | MS.gene48032:CDS | 35.0% | |
| TCACTCTCTTCAATTACCTT+TGG | - | chr5.2:76938506-76938525 | None:intergenic | 35.0% | |
| TCCCTTAAAATATGCGTGTT+GGG | + | chr5.2:76937781-76937800 | MS.gene48032:intron | 35.0% | |
| TCTTCAATTACCTTTGGATC+TGG | - | chr5.2:76938500-76938519 | None:intergenic | 35.0% | |
| TGAGAAGGAAATCGAATTTG+AGG | + | chr5.2:76937497-76937516 | MS.gene48032:CDS | 35.0% | |
| TGAGTTATATAGACCTCCAA+CGG | + | chr5.2:76938742-76938761 | MS.gene48032:CDS | 35.0% | |
| TTCCCTTAAAATATGCGTGT+TGG | + | chr5.2:76937780-76937799 | MS.gene48032:intron | 35.0% | |
| ! | TACCCAACACGCATATTTTA+AGG | - | chr5.2:76937786-76937805 | None:intergenic | 35.0% |
| ! | TGAATGATCAAGTTGTAAGC+TGG | - | chr5.2:76938443-76938462 | None:intergenic | 35.0% |
| !! | AACACGCATATTTTAAGGGA+AGG | - | chr5.2:76937781-76937800 | None:intergenic | 35.0% |
| !! | ACCCAACACGCATATTTTAA+GGG | - | chr5.2:76937785-76937804 | None:intergenic | 35.0% |
| AAGACAAACCAACACACGTT+TGG | - | chr5.2:76937475-76937494 | None:intergenic | 40.0% | |
| ACAAGGTTCACCATGATTCT+TGG | + | chr5.2:76937855-76937874 | MS.gene48032:intron | 40.0% | |
| CAATAAGGTAGGTCTCTTAC+CGG | + | chr5.2:76938003-76938022 | MS.gene48032:intron | 40.0% | |
| CATCTATTTGTGCAGAGTCT+AGG | + | chr5.2:76938294-76938313 | MS.gene48032:intron | 40.0% | |
| GAAGGTGACTTATATCAGCA+AGG | - | chr5.2:76938607-76938626 | None:intergenic | 40.0% | |
| GATGGAGACTATACCCTTTA+TGG | + | chr5.2:76937698-76937717 | MS.gene48032:CDS | 40.0% | |
| GGAAAAATGTAAGTGCTTGG+TGG | + | chr5.2:76938681-76938700 | MS.gene48032:CDS | 40.0% | |
| GGTCTCTTACCGGATAAAAT+TGG | + | chr5.2:76938013-76938032 | MS.gene48032:intron | 40.0% | |
| GTAAGAGACCTACCTTATTG+CGG | - | chr5.2:76938003-76938022 | None:intergenic | 40.0% | |
| TCAAAGAGCAAGTATTTGGC+TGG | + | chr5.2:76938569-76938588 | MS.gene48032:CDS | 40.0% | |
| TCCTGAGTACCTCAAATTAC+AGG | + | chr5.2:76937557-76937576 | MS.gene48032:CDS | 40.0% | |
| TGAAGAGAGTGAAGCAAAGT+TGG | + | chr5.2:76938514-76938533 | MS.gene48032:CDS | 40.0% | |
| TGCCATCAACTAGTAGTGAA+GGG | - | chr5.2:76938475-76938494 | None:intergenic | 40.0% | |
| TTCCCTTCACTACTAGTTGA+TGG | + | chr5.2:76938470-76938489 | MS.gene48032:CDS | 40.0% | |
| ! | AAAAGGGTCTTGTGGAACAA+TGG | + | chr5.2:76938387-76938406 | MS.gene48032:CDS | 40.0% |
| ! | ACCTGTAATTTGAGGTACTC+AGG | - | chr5.2:76937561-76937580 | None:intergenic | 40.0% |
| ! | ATGATCAAGTTGTAAGCTGG+TGG | - | chr5.2:76938440-76938459 | None:intergenic | 40.0% |
| ! | GTTCATAATCTGCAGCCTTT+TGG | + | chr5.2:76937656-76937675 | MS.gene48032:intron | 40.0% |
| ! | TGATCAAGTTGTAAGCTGGT+GGG | - | chr5.2:76938439-76938458 | None:intergenic | 40.0% |
| !! | GTTGGTTTGTCTTGTTGAGA+AGG | + | chr5.2:76937482-76937501 | MS.gene48032:CDS | 40.0% |
| !!! | TGTTTTGAAGGGTGAACACA+AGG | + | chr5.2:76937533-76937552 | MS.gene48032:CDS | 40.0% |
| GTGCCATCAACTAGTAGTGA+AGG | - | chr5.2:76938476-76938495 | None:intergenic | 45.0% | |
| AACCAACACACGTTTGGCTG+AGG | - | chr5.2:76937469-76937488 | None:intergenic | 50.0% | |
| TGATGGCACTCCAGATCCAA+AGG | + | chr5.2:76938487-76938506 | MS.gene48032:CDS | 50.0% | |
| ! | TCACAAGGGGTTGAGTTGCT+AGG | + | chr5.2:76938350-76938369 | MS.gene48032:CDS | 50.0% |
| ACGTTTGGCTGAGGCACAGT+GGG | - | chr5.2:76937460-76937479 | None:intergenic | 55.0% | |
| TGCCTCAGCCAAACGTGTGT+TGG | + | chr5.2:76937464-76937483 | MS.gene48032:CDS | 55.0% | |
| CACGTTTGGCTGAGGCACAG+TGG | - | chr5.2:76937461-76937480 | None:intergenic | 60.0% | |
| CGTTTGGCTGAGGCACAGTG+GGG | - | chr5.2:76937459-76937478 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 76937435 | 76938769 | 76937435 | ID=MS.gene48032 |
| chr5.2 | mRNA | 76937435 | 76938769 | 76937435 | ID=MS.gene48032.t1;Parent=MS.gene48032 |
| chr5.2 | exon | 76937435 | 76937578 | 76937435 | ID=MS.gene48032.t1.exon1;Parent=MS.gene48032.t1 |
| chr5.2 | CDS | 76937435 | 76937578 | 76937435 | ID=cds.MS.gene48032.t1;Parent=MS.gene48032.t1 |
| chr5.2 | exon | 76937671 | 76937719 | 76937671 | ID=MS.gene48032.t1.exon2;Parent=MS.gene48032.t1 |
| chr5.2 | CDS | 76937671 | 76937719 | 76937671 | ID=cds.MS.gene48032.t1;Parent=MS.gene48032.t1 |
| chr5.2 | exon | 76938309 | 76938769 | 76938309 | ID=MS.gene48032.t1.exon3;Parent=MS.gene48032.t1 |
| chr5.2 | CDS | 76938309 | 76938769 | 76938309 | ID=cds.MS.gene48032.t1;Parent=MS.gene48032.t1 |
| Gene Sequence |
| Protein sequence |
