Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017062.t1 | XP_003617377.1 | 98.1 | 215 | 4 | 0 | 1 | 215 | 1 | 215 | 2.60E-119 | 438 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017062.t1 | O80852 | 62.5 | 216 | 78 | 2 | 1 | 215 | 1 | 214 | 3.6e-77 | 289.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017062.t1 | G7K3B1 | 98.1 | 215 | 4 | 0 | 1 | 215 | 1 | 215 | 1.9e-119 | 438.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017062.t1 | MTR_5g090920 | 97.685 | 216 | 5 | 0 | 1 | 216 | 1 | 216 | 3.02e-156 | 431 |
MS.gene017062.t1 | MTR_5g090910 | 88.372 | 215 | 25 | 0 | 1 | 215 | 1 | 215 | 8.51e-142 | 395 |
MS.gene017062.t1 | MTR_3g450930 | 71.296 | 216 | 59 | 2 | 1 | 215 | 1 | 214 | 4.14e-111 | 317 |
MS.gene017062.t1 | MTR_3g450790 | 70.507 | 217 | 61 | 2 | 1 | 216 | 1 | 215 | 2.73e-110 | 315 |
MS.gene017062.t1 | MTR_5g090910 | 86.093 | 151 | 21 | 0 | 65 | 215 | 8 | 158 | 3.54e-94 | 272 |
MS.gene017062.t1 | MTR_3g064700 | 54.630 | 216 | 92 | 4 | 1 | 213 | 1 | 213 | 5.82e-79 | 236 |
MS.gene017062.t1 | MTR_1g026140 | 45.000 | 220 | 112 | 5 | 3 | 215 | 5 | 222 | 7.99e-61 | 190 |
MS.gene017062.t1 | MTR_1g088850 | 44.550 | 211 | 113 | 4 | 1 | 209 | 1 | 209 | 1.54e-57 | 181 |
MS.gene017062.t1 | MTR_1g088840 | 41.981 | 212 | 118 | 4 | 2 | 211 | 3 | 211 | 1.81e-54 | 173 |
MS.gene017062.t1 | MTR_1g088825 | 41.981 | 212 | 118 | 4 | 2 | 211 | 3 | 211 | 1.81e-54 | 173 |
MS.gene017062.t1 | MTR_1g088845 | 42.453 | 212 | 117 | 4 | 2 | 211 | 3 | 211 | 3.04e-51 | 165 |
MS.gene017062.t1 | MTR_1g088840 | 42.169 | 166 | 92 | 3 | 47 | 211 | 2 | 164 | 9.33e-42 | 139 |
MS.gene017062.t1 | MTR_1g088840 | 44.348 | 115 | 60 | 3 | 98 | 211 | 4 | 115 | 1.64e-26 | 99.0 |
MS.gene017062.t1 | MTR_1g492670 | 45.455 | 66 | 35 | 1 | 146 | 211 | 2 | 66 | 5.63e-14 | 64.7 |
MS.gene017062.t1 | MTR_8g098420 | 27.746 | 173 | 118 | 5 | 1 | 168 | 1 | 171 | 1.24e-11 | 61.6 |
MS.gene017062.t1 | MTR_8g098420 | 27.746 | 173 | 118 | 5 | 1 | 168 | 1 | 171 | 2.46e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017062.t1 | AT2G30860 | 62.212 | 217 | 79 | 2 | 1 | 216 | 1 | 215 | 8.96e-100 | 288 |
MS.gene017062.t1 | AT2G30870 | 58.065 | 217 | 88 | 2 | 1 | 216 | 1 | 215 | 3.18e-89 | 262 |
MS.gene017062.t1 | AT3G03190 | 48.357 | 213 | 106 | 3 | 1 | 211 | 1 | 211 | 6.39e-67 | 205 |
MS.gene017062.t1 | AT2G30860 | 60.645 | 155 | 58 | 2 | 1 | 154 | 1 | 153 | 3.20e-64 | 196 |
MS.gene017062.t1 | AT5G17220 | 44.340 | 212 | 116 | 2 | 1 | 211 | 1 | 211 | 1.44e-61 | 191 |
MS.gene017062.t1 | AT3G62760 | 46.190 | 210 | 109 | 4 | 1 | 208 | 1 | 208 | 1.47e-61 | 192 |
MS.gene017062.t1 | AT2G47730 | 41.706 | 211 | 119 | 4 | 5 | 213 | 54 | 262 | 2.50e-55 | 177 |
MS.gene017062.t1 | AT2G47730 | 41.706 | 211 | 119 | 4 | 5 | 213 | 54 | 262 | 2.50e-55 | 177 |
MS.gene017062.t1 | AT1G02930 | 41.346 | 208 | 118 | 4 | 3 | 209 | 4 | 208 | 9.98e-50 | 161 |
MS.gene017062.t1 | AT1G02930 | 41.346 | 208 | 118 | 4 | 3 | 209 | 4 | 208 | 9.98e-50 | 161 |
MS.gene017062.t1 | AT4G02520 | 40.952 | 210 | 118 | 4 | 3 | 208 | 4 | 211 | 2.43e-49 | 160 |
MS.gene017062.t1 | AT1G02920 | 41.827 | 208 | 118 | 3 | 3 | 209 | 4 | 209 | 5.65e-49 | 159 |
MS.gene017062.t1 | AT2G02930 | 41.232 | 211 | 118 | 4 | 3 | 209 | 4 | 212 | 1.33e-48 | 158 |
MS.gene017062.t1 | AT1G02950 | 41.176 | 204 | 116 | 4 | 4 | 205 | 26 | 227 | 1.01e-46 | 154 |
MS.gene017062.t1 | AT1G02950 | 41.176 | 204 | 116 | 4 | 4 | 205 | 26 | 227 | 1.01e-46 | 154 |
MS.gene017062.t1 | AT1G02950 | 41.176 | 204 | 116 | 4 | 4 | 205 | 28 | 229 | 1.18e-46 | 154 |
MS.gene017062.t1 | AT1G02950 | 41.176 | 204 | 116 | 4 | 4 | 205 | 38 | 239 | 1.52e-46 | 154 |
MS.gene017062.t1 | AT1G49860 | 40.476 | 210 | 112 | 5 | 9 | 209 | 9 | 214 | 2.24e-43 | 146 |
MS.gene017062.t1 | AT1G02940 | 37.143 | 210 | 128 | 4 | 4 | 211 | 40 | 247 | 4.35e-43 | 145 |
MS.gene017062.t1 | AT1G02940 | 37.143 | 210 | 128 | 4 | 4 | 211 | 40 | 247 | 4.35e-43 | 145 |
MS.gene017062.t1 | AT1G02940 | 37.143 | 210 | 128 | 4 | 4 | 211 | 53 | 260 | 7.03e-43 | 145 |
MS.gene017062.t1 | AT1G02940 | 37.143 | 210 | 128 | 4 | 4 | 211 | 65 | 272 | 7.23e-43 | 145 |
MS.gene017062.t1 | AT1G02950 | 38.889 | 144 | 85 | 3 | 63 | 205 | 60 | 201 | 1.02e-26 | 102 |
MS.gene017062.t1 | AT2G02390 | 40.299 | 67 | 40 | 0 | 11 | 77 | 18 | 84 | 1.59e-11 | 61.6 |
MS.gene017062.t1 | AT2G02380 | 38.806 | 67 | 41 | 0 | 11 | 77 | 21 | 87 | 3.24e-11 | 61.2 |
MS.gene017062.t1 | AT2G02390 | 40.299 | 67 | 40 | 0 | 11 | 77 | 18 | 84 | 3.75e-11 | 60.8 |
MS.gene017062.t1 | AT5G41240 | 29.885 | 174 | 113 | 5 | 1 | 168 | 1 | 171 | 4.39e-11 | 62.0 |
Find 53 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGATTATATTGTTAATAATA+TGG | 0.137099 | 5.1:+72257073 | MS.gene017062:CDS |
TCACCCTTCAAAACATTAAT+AGG | 0.170561 | 5.1:-72255964 | None:intergenic |
GATGGAGACTATACCCTTTA+TGG | 0.175031 | 5.1:+72256137 | MS.gene017062:CDS |
GGGGAAAGATTATTTGATTA+AGG | 0.243823 | 5.1:+72257094 | MS.gene017062:CDS |
GTTATCAAAGAGCAAGTATT+TGG | 0.269787 | 5.1:+72257004 | MS.gene017062:CDS |
GTTCATAATCTGCAGCCTTT+TGG | 0.308479 | 5.1:+72256095 | MS.gene017062:intron |
GCTTACAACTTGATCATTCA+TGG | 0.312434 | 5.1:+72256882 | MS.gene017062:CDS |
TCACTCTCTTCAATTACCTT+TGG | 0.317783 | 5.1:-72256942 | None:intergenic |
GTCAAGATGTTTAACCATAA+AGG | 0.320171 | 5.1:-72256151 | None:intergenic |
TTCCCTTCACTACTAGTTGA+TGG | 0.324654 | 5.1:+72256909 | MS.gene017062:CDS |
AACATGGTAGTGAAGGTTTA+TGG | 0.332703 | 5.1:+72255871 | None:intergenic |
TTAACAATATAATCAGTAAA+TGG | 0.341163 | 5.1:-72257065 | None:intergenic |
GATTATATTGTTAATAATAT+GGG | 0.363367 | 5.1:+72257074 | MS.gene017062:CDS |
CACCCTTCAAAACATTAATA+GGG | 0.374837 | 5.1:-72255963 | None:intergenic |
TCCTGAGTACCTCAAATTAC+AGG | 0.384618 | 5.1:+72255996 | MS.gene017062:CDS |
AGGAAAGACAATAGAAGAAA+AGG | 0.389428 | 5.1:+72256809 | MS.gene017062:CDS |
CATCTATTTGTGCAGAGTCT+AGG | 0.392209 | 5.1:+72256733 | MS.gene017062:intron |
TCTTCAATTACCTTTGGATC+TGG | 0.393161 | 5.1:-72256936 | None:intergenic |
AATGTTCCTGTTATTAAAGA+TGG | 0.393639 | 5.1:+72256119 | MS.gene017062:CDS |
TAGTCTCCATCTTTAATAAC+AGG | 0.407930 | 5.1:-72256125 | None:intergenic |
TCAAGATGTTTAACCATAAA+GGG | 0.413133 | 5.1:-72256150 | None:intergenic |
TGAAGAGAGTGAAGCAAAGT+TGG | 0.427269 | 5.1:+72256953 | MS.gene017062:CDS |
TGAGAAGGAAATCGAATTTG+AGG | 0.448439 | 5.1:+72255936 | MS.gene017062:CDS |
ATCTATTTGTGCAGAGTCTA+GGG | 0.458363 | 5.1:+72256734 | MS.gene017062:intron |
AAAGATGAACCTGTAATTTG+AGG | 0.461022 | 5.1:-72256005 | None:intergenic |
AAGACAAACCAACACACGTT+TGG | 0.462369 | 5.1:-72255911 | None:intergenic |
GGAAAGACAATAGAAGAAAA+GGG | 0.480576 | 5.1:+72256810 | MS.gene017062:CDS |
ATAACAGGAACATTTCCAAA+AGG | 0.493720 | 5.1:-72256110 | None:intergenic |
ACGTTTGGCTGAGGCACAGT+GGG | 0.494854 | 5.1:-72255896 | None:intergenic |
TCAAAGAGCAAGTATTTGGC+TGG | 0.510050 | 5.1:+72257008 | MS.gene017062:CDS |
TGTTGAACATTTATGAAGAG+AGG | 0.513838 | 5.1:+72256982 | MS.gene017062:CDS |
GTTGGTTTGTCTTGTTGAGA+AGG | 0.538282 | 5.1:+72255921 | MS.gene017062:CDS |
TCACAAGGGGTTGAGTTGCT+AGG | 0.539500 | 5.1:+72256789 | MS.gene017062:CDS |
ACCTGTAATTTGAGGTACTC+AGG | 0.541034 | 5.1:-72255997 | None:intergenic |
AAGATTATTTGATTAAGGAG+AGG | 0.552057 | 5.1:+72257099 | MS.gene017062:CDS |
GTGCCATCAACTAGTAGTGA+AGG | 0.552925 | 5.1:-72256912 | None:intergenic |
ATTATATTGTTAATAATATG+GGG | 0.570271 | 5.1:+72257075 | MS.gene017062:CDS |
AAACCAAAACATGGTAGTGA+AGG | 0.575055 | 5.1:+72255864 | None:intergenic |
AAAAGGGTCTTGTGGAACAA+TGG | 0.581223 | 5.1:+72256826 | MS.gene017062:CDS |
AACCAACACACGTTTGGCTG+AGG | 0.583408 | 5.1:-72255905 | None:intergenic |
TGCCTCAGCCAAACGTGTGT+TGG | 0.583612 | 5.1:+72255903 | MS.gene017062:CDS |
AATAGAAGAAAAGGGTCTTG+TGG | 0.583687 | 5.1:+72256818 | MS.gene017062:CDS |
CAATATAATCAGTAAATGGA+AGG | 0.596823 | 5.1:-72257061 | None:intergenic |
TGAGTTATATAGACCTCCAA+CGG | 0.602410 | 5.1:+72257181 | MS.gene017062:CDS |
TGATGGCACTCCAGATCCAA+AGG | 0.616475 | 5.1:+72256926 | MS.gene017062:CDS |
TGAATGATCAAGTTGTAAGC+TGG | 0.624569 | 5.1:-72256879 | None:intergenic |
CACGTTTGGCTGAGGCACAG+TGG | 0.626355 | 5.1:-72255897 | None:intergenic |
TGCCATCAACTAGTAGTGAA+GGG | 0.633206 | 5.1:-72256911 | None:intergenic |
ATATAAGTAGTAGACCATCA+TGG | 0.637766 | 5.1:+72257147 | MS.gene017062:CDS |
ATGATCAAGTTGTAAGCTGG+TGG | 0.646810 | 5.1:-72256876 | None:intergenic |
GAAGGTGACTTATATCAGCA+AGG | 0.657717 | 5.1:-72257043 | None:intergenic |
TGATCAAGTTGTAAGCTGGT+GGG | 0.684135 | 5.1:-72256875 | None:intergenic |
CGTTTGGCTGAGGCACAGTG+GGG | 0.742956 | 5.1:-72255895 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTAAAATTTATTTTTATTTT+CGG | - | chr5.1:72256402-72256421 | None:intergenic | 0.0% |
!! | ATTATATTGTTAATAATATG+GGG | + | chr5.1:72257075-72257094 | MS.gene017062:CDS | 10.0% |
!! | GATTATATTGTTAATAATAT+GGG | + | chr5.1:72257074-72257093 | MS.gene017062:CDS | 10.0% |
!! | TGATTATATTGTTAATAATA+TGG | + | chr5.1:72257073-72257092 | MS.gene017062:CDS | 10.0% |
!!! | TTTTGTTGTATTAAAATTAA+GGG | - | chr5.1:72256617-72256636 | None:intergenic | 10.0% |
!!! | TTTTTGTTGTATTAAAATTA+AGG | - | chr5.1:72256618-72256637 | None:intergenic | 10.0% |
!! | TTAACAATATAATCAGTAAA+TGG | - | chr5.1:72257068-72257087 | None:intergenic | 15.0% |
!!! | TTGTTTTCAACTTATTTTTT+TGG | + | chr5.1:72256509-72256528 | MS.gene017062:intron | 15.0% |
!! | AAAATATATAAACCGCAATA+AGG | + | chr5.1:72256427-72256446 | MS.gene017062:intron | 20.0% |
!! | TGAAAAAACAAGAATTAGAA+AGG | - | chr5.1:72256188-72256207 | None:intergenic | 20.0% |
!! | TGAAAACATAAAAATCAGTA+AGG | - | chr5.1:72256715-72256734 | None:intergenic | 20.0% |
!! | TTTAGTATATGTTTGATACT+AGG | - | chr5.1:72256327-72256346 | None:intergenic | 20.0% |
!!! | ACCTTGTTAATTTTGTAAAA+CGG | - | chr5.1:72256281-72256300 | None:intergenic | 20.0% |
!!! | TTTCAACTTATTTTTTTGGA+AGG | + | chr5.1:72256513-72256532 | MS.gene017062:intron | 20.0% |
! | AAGATTATTTGATTAAGGAG+AGG | + | chr5.1:72257099-72257118 | MS.gene017062:CDS | 25.0% |
! | AATGTTCCTGTTATTAAAGA+TGG | + | chr5.1:72256119-72256138 | MS.gene017062:CDS | 25.0% |
! | AGAAAAATATAGATCACAAG+GGG | + | chr5.1:72256776-72256795 | MS.gene017062:CDS | 25.0% |
! | AGATTATGAACAAAGTACAT+GGG | - | chr5.1:72256086-72256105 | None:intergenic | 25.0% |
! | CAATATAATCAGTAAATGGA+AGG | - | chr5.1:72257064-72257083 | None:intergenic | 25.0% |
! | CAGAAAAATATAGATCACAA+GGG | + | chr5.1:72256775-72256794 | MS.gene017062:CDS | 25.0% |
! | GATCCTTGAAAAAAAAATGT+AGG | - | chr5.1:72256580-72256599 | None:intergenic | 25.0% |
! | GTAATAGCATAAGATTCAAT+AGG | - | chr5.1:72256693-72256712 | None:intergenic | 25.0% |
! | TCAAGATGTTTAACCATAAA+GGG | - | chr5.1:72256153-72256172 | None:intergenic | 25.0% |
! | TTGTATTAAAATTAAGGGCA+AGG | - | chr5.1:72256612-72256631 | None:intergenic | 25.0% |
!! | AATTAGAAAGGCATAACATA+GGG | - | chr5.1:72256176-72256195 | None:intergenic | 25.0% |
!! | ACCGTTTTACAAAATTAACA+AGG | + | chr5.1:72256277-72256296 | MS.gene017062:intron | 25.0% |
!! | ACTCAATTTATTCTAGAAGA+AGG | - | chr5.1:72256557-72256576 | None:intergenic | 25.0% |
!! | TTGTTAATTTTGTAAAACGG+TGG | - | chr5.1:72256278-72256297 | None:intergenic | 25.0% |
!!! | AGTCCTACATTTTTTTTTCA+AGG | + | chr5.1:72256574-72256593 | MS.gene017062:intron | 25.0% |
!!! | TTTTTTTTCAAGGATCACAA+TGG | + | chr5.1:72256584-72256603 | MS.gene017062:intron | 25.0% |
AAAGATGAACCTGTAATTTG+AGG | - | chr5.1:72256008-72256027 | None:intergenic | 30.0% | |
AGGAAAGACAATAGAAGAAA+AGG | + | chr5.1:72256809-72256828 | MS.gene017062:CDS | 30.0% | |
ATAACAGGAACATTTCCAAA+AGG | - | chr5.1:72256113-72256132 | None:intergenic | 30.0% | |
ATATAAGTAGTAGACCATCA+TGG | + | chr5.1:72257147-72257166 | MS.gene017062:CDS | 30.0% | |
CACCCTTCAAAACATTAATA+GGG | - | chr5.1:72255966-72255985 | None:intergenic | 30.0% | |
CAGATTATGAACAAAGTACA+TGG | - | chr5.1:72256087-72256106 | None:intergenic | 30.0% | |
GCAGAAAAATATAGATCACA+AGG | + | chr5.1:72256774-72256793 | MS.gene017062:CDS | 30.0% | |
GGAAAGACAATAGAAGAAAA+GGG | + | chr5.1:72256810-72256829 | MS.gene017062:CDS | 30.0% | |
GGGGAAAGATTATTTGATTA+AGG | + | chr5.1:72257094-72257113 | MS.gene017062:CDS | 30.0% | |
GTCAAGATGTTTAACCATAA+AGG | - | chr5.1:72256154-72256173 | None:intergenic | 30.0% | |
GTTATCAAAGAGCAAGTATT+TGG | + | chr5.1:72257004-72257023 | MS.gene017062:CDS | 30.0% | |
TAGTCTCCATCTTTAATAAC+AGG | - | chr5.1:72256128-72256147 | None:intergenic | 30.0% | |
TATATAAACCGCAATAAGGT+AGG | + | chr5.1:72256431-72256450 | MS.gene017062:intron | 30.0% | |
TCACCCTTCAAAACATTAAT+AGG | - | chr5.1:72255967-72255986 | None:intergenic | 30.0% | |
TGTTGAACATTTATGAAGAG+AGG | + | chr5.1:72256982-72257001 | MS.gene017062:CDS | 30.0% | |
! | GAATTAGAAAGGCATAACAT+AGG | - | chr5.1:72256177-72256196 | None:intergenic | 30.0% |
! | GATCTATCTCCAATTTTATC+CGG | - | chr5.1:72256464-72256483 | None:intergenic | 30.0% |
! | TCAAGAATTTTGTTCCATGA+TGG | - | chr5.1:72257164-72257183 | None:intergenic | 30.0% |
!! | ATTTTAAGGGAAGGAACAAA+AGG | - | chr5.1:72256211-72256230 | None:intergenic | 30.0% |
!! | GTCCCTATTAATGTTTTGAA+GGG | + | chr5.1:72255961-72255980 | MS.gene017062:CDS | 30.0% |
!! | TGTCCCTATTAATGTTTTGA+AGG | + | chr5.1:72255960-72255979 | MS.gene017062:CDS | 30.0% |
AATAGAAGAAAAGGGTCTTG+TGG | + | chr5.1:72256818-72256837 | MS.gene017062:CDS | 35.0% | |
AGAGGAAAAATGTAAGTGCT+TGG | + | chr5.1:72257117-72257136 | MS.gene017062:CDS | 35.0% | |
AGGATAGATTCCAAGAATCA+TGG | - | chr5.1:72256307-72256326 | None:intergenic | 35.0% | |
ATCTATTTGTGCAGAGTCTA+GGG | + | chr5.1:72256734-72256753 | MS.gene017062:intron | 35.0% | |
GAAAAATGTAAGTGCTTGGT+GGG | + | chr5.1:72257121-72257140 | MS.gene017062:CDS | 35.0% | |
GCTTACAACTTGATCATTCA+TGG | + | chr5.1:72256882-72256901 | MS.gene017062:CDS | 35.0% | |
TCACTCTCTTCAATTACCTT+TGG | - | chr5.1:72256945-72256964 | None:intergenic | 35.0% | |
TCCCTTAAAATATGCGTGTT+GGG | + | chr5.1:72256220-72256239 | MS.gene017062:intron | 35.0% | |
TCTTCAATTACCTTTGGATC+TGG | - | chr5.1:72256939-72256958 | None:intergenic | 35.0% | |
TGAGAAGGAAATCGAATTTG+AGG | + | chr5.1:72255936-72255955 | MS.gene017062:CDS | 35.0% | |
TGAGTTATATAGACCTCCAA+CGG | + | chr5.1:72257181-72257200 | MS.gene017062:CDS | 35.0% | |
TTCCCTTAAAATATGCGTGT+TGG | + | chr5.1:72256219-72256238 | MS.gene017062:intron | 35.0% | |
! | TACCCAACACGCATATTTTA+AGG | - | chr5.1:72256225-72256244 | None:intergenic | 35.0% |
! | TGAATGATCAAGTTGTAAGC+TGG | - | chr5.1:72256882-72256901 | None:intergenic | 35.0% |
!! | AACACGCATATTTTAAGGGA+AGG | - | chr5.1:72256220-72256239 | None:intergenic | 35.0% |
!! | ACCCAACACGCATATTTTAA+GGG | - | chr5.1:72256224-72256243 | None:intergenic | 35.0% |
AAGACAAACCAACACACGTT+TGG | - | chr5.1:72255914-72255933 | None:intergenic | 40.0% | |
ACAAGGTTCACCATGATTCT+TGG | + | chr5.1:72256294-72256313 | MS.gene017062:intron | 40.0% | |
CAATAAGGTAGGTCTCTTAC+CGG | + | chr5.1:72256442-72256461 | MS.gene017062:intron | 40.0% | |
CATCTATTTGTGCAGAGTCT+AGG | + | chr5.1:72256733-72256752 | MS.gene017062:intron | 40.0% | |
GAAGGTGACTTATATCAGCA+AGG | - | chr5.1:72257046-72257065 | None:intergenic | 40.0% | |
GATGGAGACTATACCCTTTA+TGG | + | chr5.1:72256137-72256156 | MS.gene017062:CDS | 40.0% | |
GGAAAAATGTAAGTGCTTGG+TGG | + | chr5.1:72257120-72257139 | MS.gene017062:CDS | 40.0% | |
GGTCTCTTACCGGATAAAAT+TGG | + | chr5.1:72256452-72256471 | MS.gene017062:intron | 40.0% | |
GTAAGAGACCTACCTTATTG+CGG | - | chr5.1:72256442-72256461 | None:intergenic | 40.0% | |
TCAAAGAGCAAGTATTTGGC+TGG | + | chr5.1:72257008-72257027 | MS.gene017062:CDS | 40.0% | |
TCCTGAGTACCTCAAATTAC+AGG | + | chr5.1:72255996-72256015 | MS.gene017062:CDS | 40.0% | |
TGAAGAGAGTGAAGCAAAGT+TGG | + | chr5.1:72256953-72256972 | MS.gene017062:CDS | 40.0% | |
TGCCATCAACTAGTAGTGAA+GGG | - | chr5.1:72256914-72256933 | None:intergenic | 40.0% | |
TTCCCTTCACTACTAGTTGA+TGG | + | chr5.1:72256909-72256928 | MS.gene017062:CDS | 40.0% | |
! | AAAAGGGTCTTGTGGAACAA+TGG | + | chr5.1:72256826-72256845 | MS.gene017062:CDS | 40.0% |
! | ACCTGTAATTTGAGGTACTC+AGG | - | chr5.1:72256000-72256019 | None:intergenic | 40.0% |
! | ATGATCAAGTTGTAAGCTGG+TGG | - | chr5.1:72256879-72256898 | None:intergenic | 40.0% |
! | GTTCATAATCTGCAGCCTTT+TGG | + | chr5.1:72256095-72256114 | MS.gene017062:intron | 40.0% |
! | TGATCAAGTTGTAAGCTGGT+GGG | - | chr5.1:72256878-72256897 | None:intergenic | 40.0% |
!! | GTTGGTTTGTCTTGTTGAGA+AGG | + | chr5.1:72255921-72255940 | MS.gene017062:CDS | 40.0% |
!!! | TGTTTTGAAGGGTGAACACA+AGG | + | chr5.1:72255972-72255991 | MS.gene017062:CDS | 40.0% |
GTGCCATCAACTAGTAGTGA+AGG | - | chr5.1:72256915-72256934 | None:intergenic | 45.0% | |
AACCAACACACGTTTGGCTG+AGG | - | chr5.1:72255908-72255927 | None:intergenic | 50.0% | |
TGATGGCACTCCAGATCCAA+AGG | + | chr5.1:72256926-72256945 | MS.gene017062:CDS | 50.0% | |
! | TCACAAGGGGTTGAGTTGCT+AGG | + | chr5.1:72256789-72256808 | MS.gene017062:CDS | 50.0% |
ACGTTTGGCTGAGGCACAGT+GGG | - | chr5.1:72255899-72255918 | None:intergenic | 55.0% | |
TGCCTCAGCCAAACGTGTGT+TGG | + | chr5.1:72255903-72255922 | MS.gene017062:CDS | 55.0% | |
CACGTTTGGCTGAGGCACAG+TGG | - | chr5.1:72255900-72255919 | None:intergenic | 60.0% | |
CGTTTGGCTGAGGCACAGTG+GGG | - | chr5.1:72255898-72255917 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 72255874 | 72257208 | 72255874 | ID=MS.gene017062 |
chr5.1 | mRNA | 72255874 | 72257208 | 72255874 | ID=MS.gene017062.t1;Parent=MS.gene017062 |
chr5.1 | exon | 72255874 | 72256017 | 72255874 | ID=MS.gene017062.t1.exon1;Parent=MS.gene017062.t1 |
chr5.1 | CDS | 72255874 | 72256017 | 72255874 | ID=cds.MS.gene017062.t1;Parent=MS.gene017062.t1 |
chr5.1 | exon | 72256110 | 72256158 | 72256110 | ID=MS.gene017062.t1.exon2;Parent=MS.gene017062.t1 |
chr5.1 | CDS | 72256110 | 72256158 | 72256110 | ID=cds.MS.gene017062.t1;Parent=MS.gene017062.t1 |
chr5.1 | exon | 72256748 | 72257208 | 72256748 | ID=MS.gene017062.t1.exon3;Parent=MS.gene017062.t1 |
chr5.1 | CDS | 72256748 | 72257208 | 72256748 | ID=cds.MS.gene017062.t1;Parent=MS.gene017062.t1 |
Gene Sequence |
Protein sequence |