Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69499.t1 | XP_013459651.1 | 97.2 | 215 | 6 | 0 | 1 | 215 | 1 | 215 | 2.90E-118 | 434.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69499.t1 | O80852 | 60.3 | 214 | 85 | 0 | 1 | 214 | 1 | 214 | 1.8e-76 | 287.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69499.t1 | A0A072UVM3 | 97.2 | 215 | 6 | 0 | 1 | 215 | 1 | 215 | 2.1e-118 | 434.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049140 | MS.gene69499 | 0.81602 | 6.86E-52 | -1.69E-46 |
| MS.gene049580 | MS.gene69499 | 0.807779 | 4.28E-50 | -1.69E-46 |
| MS.gene049861 | MS.gene69499 | 0.822287 | 2.57E-53 | -1.69E-46 |
| MS.gene055555 | MS.gene69499 | 0.807205 | 5.66E-50 | -1.69E-46 |
| MS.gene057999 | MS.gene69499 | 0.820914 | 5.33E-53 | -1.69E-46 |
| MS.gene06011 | MS.gene69499 | 0.803279 | 3.76E-49 | -1.69E-46 |
| MS.gene060586 | MS.gene69499 | 0.823554 | 1.30E-53 | -1.69E-46 |
| MS.gene060763 | MS.gene69499 | 0.818041 | 2.41E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene008337 | MS.gene69499 | PPI |
| MS.gene017060 | MS.gene69499 | PPI |
| MS.gene69499 | MS.gene048703 | PPI |
| MS.gene69499 | MS.gene05016 | PPI |
| MS.gene019183 | MS.gene69499 | PPI |
| MS.gene69499 | MS.gene83384 | PPI |
| MS.gene22195 | MS.gene69499 | PPI |
| MS.gene69499 | MS.gene72151 | PPI |
| MS.gene061566 | MS.gene69499 | PPI |
| MS.gene22188 | MS.gene69499 | PPI |
| MS.gene47714 | MS.gene69499 | PPI |
| MS.gene69499 | MS.gene48032 | PPI |
| MS.gene22196 | MS.gene69499 | PPI |
| MS.gene69499 | MS.gene017062 | PPI |
| MS.gene030405 | MS.gene69499 | PPI |
| MS.gene03034 | MS.gene69499 | PPI |
| MS.gene048743 | MS.gene69499 | PPI |
| MS.gene000510 | MS.gene69499 | PPI |
| MS.gene69505 | MS.gene69499 | PPI |
| MS.gene04976 | MS.gene69499 | PPI |
| MS.gene69499 | MS.gene69505 | PPI |
| MS.gene69499 | MS.gene07192 | PPI |
| MS.gene005621 | MS.gene69499 | PPI |
| MS.gene69499 | MS.gene049699 | PPI |
| MS.gene038277 | MS.gene69499 | PPI |
| MS.gene20711 | MS.gene69499 | PPI |
| MS.gene69499 | MS.gene048797 | PPI |
| MS.gene008334 | MS.gene69499 | PPI |
| MS.gene008278 | MS.gene69499 | PPI |
| MS.gene69499 | MS.gene48030 | PPI |
| MS.gene69499 | MS.gene049706 | PPI |
| MS.gene019181 | MS.gene69499 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69499.t1 | MTR_3g450790 | 97.209 | 215 | 6 | 0 | 1 | 215 | 1 | 215 | 2.60e-155 | 429 |
| MS.gene69499.t1 | MTR_3g450930 | 77.674 | 215 | 48 | 0 | 1 | 215 | 1 | 215 | 1.37e-126 | 356 |
| MS.gene69499.t1 | MTR_5g090920 | 72.222 | 216 | 59 | 1 | 1 | 215 | 1 | 216 | 7.58e-112 | 319 |
| MS.gene69499.t1 | MTR_5g090910 | 69.444 | 216 | 65 | 1 | 1 | 215 | 1 | 216 | 1.10e-109 | 313 |
| MS.gene69499.t1 | MTR_3g064700 | 56.338 | 213 | 92 | 1 | 1 | 212 | 1 | 213 | 7.79e-86 | 253 |
| MS.gene69499.t1 | MTR_5g090910 | 69.737 | 152 | 45 | 1 | 65 | 215 | 8 | 159 | 1.58e-73 | 220 |
| MS.gene69499.t1 | MTR_1g088850 | 49.048 | 210 | 104 | 3 | 1 | 208 | 1 | 209 | 2.10e-70 | 214 |
| MS.gene69499.t1 | MTR_1g026140 | 48.165 | 218 | 107 | 3 | 3 | 214 | 5 | 222 | 4.63e-67 | 206 |
| MS.gene69499.t1 | MTR_1g088840 | 41.905 | 210 | 120 | 2 | 2 | 210 | 3 | 211 | 2.60e-55 | 175 |
| MS.gene69499.t1 | MTR_1g088825 | 41.905 | 210 | 120 | 2 | 2 | 210 | 3 | 211 | 2.60e-55 | 175 |
| MS.gene69499.t1 | MTR_1g088845 | 42.381 | 210 | 119 | 2 | 2 | 210 | 3 | 211 | 9.28e-53 | 169 |
| MS.gene69499.t1 | MTR_1g088840 | 42.683 | 164 | 93 | 1 | 47 | 210 | 2 | 164 | 1.85e-42 | 141 |
| MS.gene69499.t1 | MTR_1g088840 | 44.248 | 113 | 62 | 1 | 98 | 210 | 4 | 115 | 7.94e-26 | 97.1 |
| MS.gene69499.t1 | MTR_8g098420 | 30.409 | 171 | 115 | 3 | 1 | 167 | 1 | 171 | 2.85e-17 | 76.6 |
| MS.gene69499.t1 | MTR_8g098420 | 29.381 | 194 | 126 | 4 | 1 | 190 | 1 | 187 | 5.37e-17 | 77.4 |
| MS.gene69499.t1 | MTR_1g492670 | 46.970 | 66 | 34 | 1 | 145 | 210 | 2 | 66 | 7.68e-14 | 64.3 |
| MS.gene69499.t1 | MTR_2g005570 | 26.667 | 180 | 105 | 5 | 39 | 208 | 42 | 204 | 7.29e-13 | 67.0 |
| MS.gene69499.t1 | MTR_4g134370 | 37.234 | 94 | 58 | 1 | 15 | 108 | 29 | 121 | 1.55e-12 | 64.7 |
| MS.gene69499.t1 | MTR_2g005570 | 26.111 | 180 | 106 | 5 | 39 | 208 | 42 | 204 | 2.76e-12 | 65.5 |
| MS.gene69499.t1 | MTR_8g098430 | 25.463 | 216 | 147 | 7 | 3 | 207 | 5 | 217 | 1.56e-11 | 62.4 |
| MS.gene69499.t1 | MTR_4g134380 | 29.560 | 159 | 95 | 5 | 15 | 166 | 29 | 177 | 1.85e-11 | 61.6 |
| MS.gene69499.t1 | MTR_4g134380 | 32.979 | 94 | 62 | 1 | 15 | 108 | 29 | 121 | 5.67e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69499.t1 | AT2G30860 | 60.000 | 215 | 86 | 0 | 1 | 215 | 1 | 215 | 1.48e-98 | 285 |
| MS.gene69499.t1 | AT2G30870 | 58.605 | 215 | 89 | 0 | 1 | 215 | 1 | 215 | 1.56e-96 | 280 |
| MS.gene69499.t1 | AT3G03190 | 51.402 | 214 | 103 | 1 | 1 | 213 | 1 | 214 | 2.30e-76 | 229 |
| MS.gene69499.t1 | AT5G17220 | 48.815 | 211 | 107 | 1 | 1 | 210 | 1 | 211 | 1.72e-69 | 211 |
| MS.gene69499.t1 | AT3G62760 | 47.368 | 209 | 107 | 3 | 1 | 207 | 1 | 208 | 4.50e-67 | 206 |
| MS.gene69499.t1 | AT2G30860 | 59.477 | 153 | 62 | 0 | 1 | 153 | 1 | 153 | 4.03e-65 | 199 |
| MS.gene69499.t1 | AT1G02930 | 45.894 | 207 | 109 | 3 | 3 | 208 | 4 | 208 | 9.26e-57 | 179 |
| MS.gene69499.t1 | AT1G02930 | 45.894 | 207 | 109 | 3 | 3 | 208 | 4 | 208 | 9.26e-57 | 179 |
| MS.gene69499.t1 | AT1G02920 | 45.894 | 207 | 110 | 2 | 3 | 208 | 4 | 209 | 1.25e-54 | 174 |
| MS.gene69499.t1 | AT2G47730 | 42.857 | 210 | 117 | 3 | 5 | 212 | 54 | 262 | 3.61e-54 | 174 |
| MS.gene69499.t1 | AT2G47730 | 42.857 | 210 | 117 | 3 | 5 | 212 | 54 | 262 | 3.61e-54 | 174 |
| MS.gene69499.t1 | AT2G02930 | 44.762 | 210 | 111 | 3 | 3 | 208 | 4 | 212 | 1.27e-53 | 171 |
| MS.gene69499.t1 | AT4G02520 | 43.541 | 209 | 113 | 3 | 3 | 207 | 4 | 211 | 1.76e-53 | 171 |
| MS.gene69499.t1 | AT1G49860 | 42.365 | 203 | 114 | 2 | 16 | 215 | 19 | 221 | 1.59e-51 | 167 |
| MS.gene69499.t1 | AT1G02950 | 40.686 | 204 | 118 | 3 | 4 | 205 | 28 | 230 | 2.95e-47 | 156 |
| MS.gene69499.t1 | AT1G02950 | 40.686 | 204 | 118 | 3 | 4 | 205 | 26 | 228 | 3.11e-47 | 155 |
| MS.gene69499.t1 | AT1G02950 | 40.686 | 204 | 118 | 3 | 4 | 205 | 26 | 228 | 3.11e-47 | 155 |
| MS.gene69499.t1 | AT1G02950 | 40.686 | 204 | 118 | 3 | 4 | 205 | 38 | 240 | 3.49e-47 | 156 |
| MS.gene69499.t1 | AT1G02940 | 38.278 | 209 | 126 | 3 | 4 | 210 | 40 | 247 | 5.81e-46 | 153 |
| MS.gene69499.t1 | AT1G02940 | 38.278 | 209 | 126 | 3 | 4 | 210 | 40 | 247 | 5.81e-46 | 153 |
| MS.gene69499.t1 | AT1G02940 | 38.278 | 209 | 126 | 3 | 4 | 210 | 53 | 260 | 7.73e-46 | 153 |
| MS.gene69499.t1 | AT1G02940 | 38.278 | 209 | 126 | 3 | 4 | 210 | 65 | 272 | 9.21e-46 | 153 |
| MS.gene69499.t1 | AT1G02950 | 37.241 | 145 | 89 | 2 | 62 | 205 | 59 | 202 | 1.05e-26 | 102 |
| MS.gene69499.t1 | AT5G41240 | 28.000 | 200 | 138 | 3 | 1 | 194 | 1 | 200 | 3.59e-14 | 71.2 |
| MS.gene69499.t1 | AT5G41210 | 26.108 | 203 | 144 | 4 | 1 | 197 | 2 | 204 | 3.87e-13 | 66.6 |
| MS.gene69499.t1 | AT1G09640 | 26.816 | 179 | 121 | 4 | 39 | 214 | 40 | 211 | 1.04e-12 | 65.9 |
| MS.gene69499.t1 | AT1G09640 | 26.901 | 171 | 117 | 3 | 39 | 208 | 40 | 203 | 1.38e-12 | 66.2 |
| MS.gene69499.t1 | AT5G41220 | 27.000 | 200 | 140 | 3 | 1 | 194 | 1 | 200 | 3.53e-12 | 65.5 |
| MS.gene69499.t1 | AT1G57720 | 27.168 | 173 | 114 | 4 | 39 | 208 | 40 | 203 | 8.44e-12 | 63.9 |
| MS.gene69499.t1 | AT1G57720 | 27.168 | 173 | 114 | 4 | 39 | 208 | 40 | 203 | 8.44e-12 | 63.9 |
Find 55 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTCTCTTCAATCACTTTC+TGG | 0.116870 | 3.1:+32195315 | None:intergenic |
| TGTTCTGTTTGCACCGTTAA+AGG | 0.197508 | 3.1:-32195351 | MS.gene69499:CDS |
| TCAAACTGGGAGAGGAAATT+TGG | 0.210954 | 3.1:-32195168 | MS.gene69499:CDS |
| TACTGTCTTTCCTAACAAAT+TGG | 0.231703 | 3.1:+32195454 | None:intergenic |
| TCTTGCATTTGGTCACTATT+TGG | 0.246792 | 3.1:-32195195 | MS.gene69499:CDS |
| CAGCCTATGGTTCTCCAAAA+AGG | 0.287014 | 3.1:-32196519 | MS.gene69499:CDS |
| CACTATTTGGTGAATCAAAC+TGG | 0.321868 | 3.1:-32195182 | MS.gene69499:CDS |
| GATCTTAGCCATCTTGCATT+TGG | 0.333958 | 3.1:-32195206 | MS.gene69499:CDS |
| TTCCTAACAAATTGGTTCCT+TGG | 0.336666 | 3.1:+32195462 | None:intergenic |
| AACATGGTTGTGAAAGTTTA+CGG | 0.352941 | 3.1:-32196544 | MS.gene69499:CDS |
| GATGGTGATTATACCCTCTA+TGG | 0.366109 | 3.1:-32196274 | MS.gene69499:intron |
| AACCAAGGAACCAATTTGTT+AGG | 0.388163 | 3.1:-32195464 | MS.gene69499:CDS |
| AACCTGCAGTTTGAGAAAAT+CGG | 0.405623 | 3.1:+32196417 | None:intergenic |
| TCACCGGTTTCACCCTTTAA+CGG | 0.407596 | 3.1:+32195338 | None:intergenic |
| GTTCTGTTTGCACCGTTAAA+GGG | 0.425408 | 3.1:-32195350 | MS.gene69499:CDS |
| TTCAATCACTTTCTGGTCAC+CGG | 0.431772 | 3.1:+32195322 | None:intergenic |
| ACCTGCAGTTTGAGAAAATC+GGG | 0.447227 | 3.1:+32196418 | None:intergenic |
| ATGACCAAGCTGTAGATTGC+TGG | 0.457280 | 3.1:+32195377 | None:intergenic |
| TGTTGATATTGATCTCTTCA+AGG | 0.461501 | 3.1:-32196455 | MS.gene69499:CDS |
| TAATCACCATCTTGAATAAG+AGG | 0.461529 | 3.1:+32196286 | None:intergenic |
| AGGAAAGACAGTAGAAGAAA+GGG | 0.463386 | 3.1:-32195444 | MS.gene69499:CDS |
| GCACCGTTAAAGGGTGAAAC+CGG | 0.464712 | 3.1:-32195341 | MS.gene69499:CDS |
| TAGGAAAGACAGTAGAAGAA+AGG | 0.466401 | 3.1:-32195445 | MS.gene69499:CDS |
| ATATTAGTAGCAGGCCATCT+TGG | 0.502723 | 3.1:-32195109 | MS.gene69499:CDS |
| TATATAAATACCCTGTGTAA+TGG | 0.503081 | 3.1:-32195070 | None:intergenic |
| AAAGTTTACGGACCAGCCTA+TGG | 0.503832 | 3.1:-32196532 | MS.gene69499:CDS |
| GAGGAAATTTGGTTAGAGAG+AGG | 0.505432 | 3.1:-32195157 | MS.gene69499:CDS |
| TCAAGAACCTTCTTCCAAGA+TGG | 0.510216 | 3.1:+32195095 | None:intergenic |
| TGTTGGATATTTACGAGGAA+AGG | 0.517509 | 3.1:-32195274 | MS.gene69499:CDS |
| GAGGTTCCTCTTATTCAAGA+TGG | 0.522461 | 3.1:-32196292 | MS.gene69499:CDS |
| TAGCAGGCCATCTTGGAAGA+AGG | 0.522731 | 3.1:-32195102 | MS.gene69499:CDS |
| TCAAAGACAAAGTACTTGGC+TGG | 0.539946 | 3.1:-32195248 | MS.gene69499:CDS |
| GCTCTCAAAGACAAAGTACT+TGG | 0.540511 | 3.1:-32195252 | MS.gene69499:CDS |
| GTTGATATTGATCTCTTCAA+GGG | 0.544872 | 3.1:-32196454 | MS.gene69499:CDS |
| ATAAGAGGAACCTCTCCAAA+AGG | 0.553491 | 3.1:+32196301 | None:intergenic |
| TTGGTGAATCAAACTGGGAG+AGG | 0.560271 | 3.1:-32195176 | MS.gene69499:CDS |
| GATGAGGTGGCTAACCATAG+AGG | 0.563044 | 3.1:+32196260 | None:intergenic |
| CACAAACAAAACCATTACAC+AGG | 0.565632 | 3.1:+32195059 | None:intergenic |
| GGTGGGATGATATTAGTAGC+AGG | 0.571858 | 3.1:-32195118 | MS.gene69499:CDS |
| TGAAAAGCTGAAGAAAGTGT+TGG | 0.579668 | 3.1:-32195291 | MS.gene69499:CDS |
| TCACCCAGCAATCTACAGCT+TGG | 0.583361 | 3.1:-32195381 | MS.gene69499:CDS |
| AATAGTGACCAAATGCAAGA+TGG | 0.590599 | 3.1:+32195198 | None:intergenic |
| ATGAGGTGGCTAACCATAGA+GGG | 0.609900 | 3.1:+32196261 | None:intergenic |
| AAAGGGGACTTGTGGAACAA+TGG | 0.610264 | 3.1:-32195427 | MS.gene69499:CDS |
| GAAACATGTGAGTGCATGGT+GGG | 0.618318 | 3.1:-32195135 | MS.gene69499:CDS |
| AGTAGAAGAAAGGGGACTTG+TGG | 0.620270 | 3.1:-32195435 | MS.gene69499:CDS |
| TGACCAAGCTGTAGATTGCT+GGG | 0.623969 | 3.1:+32195378 | None:intergenic |
| TGTGGAACAATGGCTTGAAG+TGG | 0.629943 | 3.1:-32195417 | MS.gene69499:CDS |
| AGAGGAAACATGTGAGTGCA+TGG | 0.644423 | 3.1:-32195139 | MS.gene69499:CDS |
| GGAAAGACAGTAGAAGAAAG+GGG | 0.650622 | 3.1:-32195443 | MS.gene69499:CDS |
| ACTATTTGGTGAATCAAACT+GGG | 0.660675 | 3.1:-32195181 | MS.gene69499:CDS |
| GAAAGTGTTGGATATTTACG+AGG | 0.669038 | 3.1:-32195279 | MS.gene69499:CDS |
| GCAGAAAAGTACAAGAACCA+AGG | 0.682353 | 3.1:-32195479 | MS.gene69499:CDS |
| ACAAACAAAACCATTACACA+GGG | 0.696248 | 3.1:+32195060 | None:intergenic |
| GGAAACATGTGAGTGCATGG+TGG | 0.712862 | 3.1:-32195136 | MS.gene69499:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAAATAAGCAGTAATTT+TGG | + | chr3.1:32195981-32196000 | None:intergenic | 15.0% |
| !!! | ATTAAGTTGAATAAAATTGA+AGG | + | chr3.1:32195242-32195261 | None:intergenic | 15.0% |
| !!! | GTTTATAAACATTTTTGAAA+AGG | + | chr3.1:32195915-32195934 | None:intergenic | 15.0% |
| !!! | TTGGATTATATTTTAAACTT+TGG | - | chr3.1:32195435-32195454 | MS.gene69499:CDS | 15.0% |
| !! | AAAATTGCAGAAAATAGTAA+AGG | + | chr3.1:32195380-32195399 | None:intergenic | 20.0% |
| !! | AAACTTTCTCAATACATTAA+GGG | - | chr3.1:32195931-32195950 | MS.gene69499:intron | 20.0% |
| !! | AAATTGCAGAAAATAGTAAA+GGG | + | chr3.1:32195379-32195398 | None:intergenic | 20.0% |
| !! | GAATAATCTATTCATACTAA+TGG | - | chr3.1:32196062-32196081 | MS.gene69499:intron | 20.0% |
| !! | TAAACTTTCTCAATACATTA+AGG | - | chr3.1:32195930-32195949 | MS.gene69499:intron | 20.0% |
| !!! | AAAATAAACAGCAATTTGTT+CGG | - | chr3.1:32195735-32195754 | MS.gene69499:intron | 20.0% |
| !!! | ATATTTTAAACTTTGGATCA+GGG | - | chr3.1:32195442-32195461 | MS.gene69499:CDS | 20.0% |
| !!! | TATATTTTAAACTTTGGATC+AGG | - | chr3.1:32195441-32195460 | MS.gene69499:CDS | 20.0% |
| ! | AGATAATGATTGTTTAAGCT+AGG | + | chr3.1:32195618-32195637 | None:intergenic | 25.0% |
| ! | AGCTTAAACAATCATTATCT+AGG | - | chr3.1:32195618-32195637 | MS.gene69499:intron | 25.0% |
| !! | GGTCTTATGTTAGTAATTTA+TGG | + | chr3.1:32195894-32195913 | None:intergenic | 25.0% |
| AAAACACATGAATCAGGATA+AGG | + | chr3.1:32195526-32195545 | None:intergenic | 30.0% | |
| AAACACATGAATCAGGATAA+GGG | + | chr3.1:32195525-32195544 | None:intergenic | 30.0% | |
| AACACATTTCAAGCATAATC+AGG | + | chr3.1:32195812-32195831 | None:intergenic | 30.0% | |
| ATGTCTACTACTTGTCAATT+TGG | - | chr3.1:32195867-32195886 | MS.gene69499:intron | 30.0% | |
| ATTAAGGGACTATAGTAACA+CGG | - | chr3.1:32195946-32195965 | MS.gene69499:intron | 30.0% | |
| GCTGAAAATATAACAGACAT+AGG | + | chr3.1:32195294-32195313 | None:intergenic | 30.0% | |
| GTCATTTCTATCTGTTAATG+TGG | - | chr3.1:32196040-32196059 | MS.gene69499:intron | 30.0% | |
| GTTGATATTGATCTCTTCAA+GGG | - | chr3.1:32195160-32195179 | MS.gene69499:CDS | 30.0% | |
| TAATCACCATCTTGAATAAG+AGG | + | chr3.1:32195331-32195350 | None:intergenic | 30.0% | |
| TACTGTCTTTCCTAACAAAT+TGG | + | chr3.1:32196163-32196182 | None:intergenic | 30.0% | |
| TCTAGGCTTAATTTATCTCT+CGG | - | chr3.1:32195635-32195654 | MS.gene69499:intron | 30.0% | |
| TGGTTAATCATCTTCACTTA+AGG | - | chr3.1:32195561-32195580 | MS.gene69499:intron | 30.0% | |
| TGTTGATATTGATCTCTTCA+AGG | - | chr3.1:32195159-32195178 | MS.gene69499:CDS | 30.0% | |
| ! | ACAAGTAGTAGACATTTTCA+AGG | + | chr3.1:32195862-32195881 | None:intergenic | 30.0% |
| ! | ACTATTTGGTGAATCAAACT+GGG | - | chr3.1:32196433-32196452 | MS.gene69499:CDS | 30.0% |
| ! | CTGTTATATTTTCAGCCTTT+TGG | - | chr3.1:32195298-32195317 | MS.gene69499:CDS | 30.0% |
| !! | AAGCGAATTTTTCAGAATCT+CGG | - | chr3.1:32196094-32196113 | MS.gene69499:intron | 30.0% |
| !!! | CTGATTCATGTGTTTTTAGA+GGG | - | chr3.1:32195530-32195549 | MS.gene69499:intron | 30.0% |
| AAAATAGTAAAGGGATGAGG+TGG | + | chr3.1:32195370-32195389 | None:intergenic | 35.0% | |
| AACCTGCAGTTTGAGAAAAT+CGG | + | chr3.1:32195200-32195219 | None:intergenic | 35.0% | |
| AATAGTGACCAAATGCAAGA+TGG | + | chr3.1:32196419-32196438 | None:intergenic | 35.0% | |
| ACTATAGTAACACGGCTTTA+GGG | - | chr3.1:32195954-32195973 | MS.gene69499:intron | 35.0% | |
| AGGAAAGACAGTAGAAGAAA+GGG | - | chr3.1:32196170-32196189 | MS.gene69499:intron | 35.0% | |
| CAGAAAATAGTAAAGGGATG+AGG | + | chr3.1:32195373-32195392 | None:intergenic | 35.0% | |
| TAGGAAAGACAGTAGAAGAA+AGG | - | chr3.1:32196169-32196188 | MS.gene69499:intron | 35.0% | |
| TCTTGCATTTGGTCACTATT+TGG | - | chr3.1:32196419-32196438 | MS.gene69499:intron | 35.0% | |
| TGTTGGATATTTACGAGGAA+AGG | - | chr3.1:32196340-32196359 | MS.gene69499:intron | 35.0% | |
| ! | AACCAAGGAACCAATTTGTT+AGG | - | chr3.1:32196150-32196169 | MS.gene69499:intron | 35.0% |
| ! | CACTATTTGGTGAATCAAAC+TGG | - | chr3.1:32196432-32196451 | MS.gene69499:CDS | 35.0% |
| ! | CAGGGTGTTACATTTAATTG+AGG | - | chr3.1:32195460-32195479 | MS.gene69499:CDS | 35.0% |
| ! | CCTCTAAAAACACATGAATC+AGG | + | chr3.1:32195532-32195551 | None:intergenic | 35.0% |
| ! | CTGATTGGTGATTTACTGAT+TGG | - | chr3.1:32195416-32195435 | MS.gene69499:CDS | 35.0% |
| ! | TGAAAAGCTGAAGAAAGTGT+TGG | - | chr3.1:32196323-32196342 | MS.gene69499:intron | 35.0% |
| ! | TTCCTAACAAATTGGTTCCT+TGG | + | chr3.1:32196155-32196174 | None:intergenic | 35.0% |
| !! | AGCGAATTTTTCAGAATCTC+GGG | - | chr3.1:32196095-32196114 | MS.gene69499:intron | 35.0% |
| !! | ATATTTTCAGCCTTTTGGAG+AGG | - | chr3.1:32195303-32195322 | MS.gene69499:CDS | 35.0% |
| !! | GAAAGTGTTGGATATTTACG+AGG | - | chr3.1:32196335-32196354 | MS.gene69499:intron | 35.0% |
| !! | GTTGGTATGTCTTTTTGAGA+AGG | - | chr3.1:32195120-32195139 | MS.gene69499:CDS | 35.0% |
| !! | GTTTTTAGAGGGTAATCAAG+TGG | - | chr3.1:32195541-32195560 | MS.gene69499:intron | 35.0% |
| !!! | CCTGATTCATGTGTTTTTAG+AGG | - | chr3.1:32195529-32195548 | MS.gene69499:intron | 35.0% |
| ACCTGCAGTTTGAGAAAATC+GGG | + | chr3.1:32195199-32195218 | None:intergenic | 40.0% | |
| AGCCTATGGTTCTCCAAAAA+GGG | - | chr3.1:32195096-32195115 | MS.gene69499:CDS | 40.0% | |
| ATAAGAGGAACCTCTCCAAA+AGG | + | chr3.1:32195316-32195335 | None:intergenic | 40.0% | |
| ATATTAGTAGCAGGCCATCT+TGG | - | chr3.1:32196505-32196524 | MS.gene69499:CDS | 40.0% | |
| CACTCTCTTCAATCACTTTC+TGG | + | chr3.1:32196302-32196321 | None:intergenic | 40.0% | |
| GACTATAGTAACACGGCTTT+AGG | - | chr3.1:32195953-32195972 | MS.gene69499:intron | 40.0% | |
| GAGGAAATTTGGTTAGAGAG+AGG | - | chr3.1:32196457-32196476 | MS.gene69499:CDS | 40.0% | |
| GAGGTTCCTCTTATTCAAGA+TGG | - | chr3.1:32195322-32195341 | MS.gene69499:CDS | 40.0% | |
| GATCTTAGCCATCTTGCATT+TGG | - | chr3.1:32196408-32196427 | MS.gene69499:intron | 40.0% | |
| GATGGTGATTATACCCTCTA+TGG | - | chr3.1:32195340-32195359 | MS.gene69499:CDS | 40.0% | |
| GGAAAGACAGTAGAAGAAAG+GGG | - | chr3.1:32196171-32196190 | MS.gene69499:intron | 40.0% | |
| GGCTGAACTTAGAATTACCA+AGG | - | chr3.1:32195656-32195675 | MS.gene69499:intron | 40.0% | |
| GTTCTGTTTGCACCGTTAAA+GGG | - | chr3.1:32196264-32196283 | MS.gene69499:intron | 40.0% | |
| TCAAACTGGGAGAGGAAATT+TGG | - | chr3.1:32196446-32196465 | MS.gene69499:CDS | 40.0% | |
| TCAAGAACCTTCTTCCAAGA+TGG | + | chr3.1:32196522-32196541 | None:intergenic | 40.0% | |
| TGTGCTGTGTAGTTACTGAT+TGG | - | chr3.1:32195401-32195420 | MS.gene69499:CDS | 40.0% | |
| TGTTCTGTTTGCACCGTTAA+AGG | - | chr3.1:32196263-32196282 | MS.gene69499:intron | 40.0% | |
| ! | AGACATACCAACACCCTTTT+TGG | + | chr3.1:32195112-32195131 | None:intergenic | 40.0% |
| ! | GCAGAAAAGTACAAGAACCA+AGG | - | chr3.1:32196135-32196154 | MS.gene69499:intron | 40.0% |
| ! | GCTCTCAAAGACAAAGTACT+TGG | - | chr3.1:32196362-32196381 | MS.gene69499:intron | 40.0% |
| ! | TCAAAGACAAAGTACTTGGC+TGG | - | chr3.1:32196366-32196385 | MS.gene69499:intron | 40.0% |
| ! | TTCAATCACTTTCTGGTCAC+CGG | + | chr3.1:32196295-32196314 | None:intergenic | 40.0% |
| !! | GGTATGTCTTTTTGAGAAGG+AGG | - | chr3.1:32195123-32195142 | MS.gene69499:CDS | 40.0% |
| AAAGGGGACTTGTGGAACAA+TGG | - | chr3.1:32196187-32196206 | MS.gene69499:intron | 45.0% | |
| AAAGTTTACGGACCAGCCTA+TGG | - | chr3.1:32195082-32195101 | MS.gene69499:CDS | 45.0% | |
| AGAGGAAACATGTGAGTGCA+TGG | - | chr3.1:32196475-32196494 | MS.gene69499:CDS | 45.0% | |
| AGTAGAAGAAAGGGGACTTG+TGG | - | chr3.1:32196179-32196198 | MS.gene69499:intron | 45.0% | |
| ATGACCAAGCTGTAGATTGC+TGG | + | chr3.1:32196240-32196259 | None:intergenic | 45.0% | |
| ATGAGGTGGCTAACCATAGA+GGG | + | chr3.1:32195356-32195375 | None:intergenic | 45.0% | |
| CAGCCTATGGTTCTCCAAAA+AGG | - | chr3.1:32195095-32195114 | MS.gene69499:CDS | 45.0% | |
| GAAACATGTGAGTGCATGGT+GGG | - | chr3.1:32196479-32196498 | MS.gene69499:CDS | 45.0% | |
| GGTGGGATGATATTAGTAGC+AGG | - | chr3.1:32196496-32196515 | MS.gene69499:CDS | 45.0% | |
| TGACCAAGCTGTAGATTGCT+GGG | + | chr3.1:32196239-32196258 | None:intergenic | 45.0% | |
| TGTGGAACAATGGCTTGAAG+TGG | - | chr3.1:32196197-32196216 | MS.gene69499:intron | 45.0% | |
| TTATAACCCTCTCGTTCCCA+TGG | + | chr3.1:32195689-32195708 | None:intergenic | 45.0% | |
| TTGGTGAATCAAACTGGGAG+AGG | - | chr3.1:32196438-32196457 | MS.gene69499:CDS | 45.0% | |
| ! | ACCCGATTTTCTCAAACTGC+AGG | - | chr3.1:32195195-32195214 | MS.gene69499:CDS | 45.0% |
| ! | TGGTTCTCCAAAAAGGGTGT+TGG | - | chr3.1:32195102-32195121 | MS.gene69499:CDS | 45.0% |
| !! | CACCCTTTTTGGAGAACCAT+AGG | + | chr3.1:32195101-32195120 | None:intergenic | 45.0% |
| !! | CTTTTTGGAGAACCATAGGC+TGG | + | chr3.1:32195097-32195116 | None:intergenic | 45.0% |
| !! | TCACCGGTTTCACCCTTTAA+CGG | + | chr3.1:32196279-32196298 | None:intergenic | 45.0% |
| AGGGAAGCAAAGATGCATGC+AGG | + | chr3.1:32195506-32195525 | None:intergenic | 50.0% | |
| GATGAGGTGGCTAACCATAG+AGG | + | chr3.1:32195357-32195376 | None:intergenic | 50.0% | |
| GCACCGTTAAAGGGTGAAAC+CGG | - | chr3.1:32196273-32196292 | MS.gene69499:intron | 50.0% | |
| GGAAACATGTGAGTGCATGG+TGG | - | chr3.1:32196478-32196497 | MS.gene69499:CDS | 50.0% | |
| GGGAAGCAAAGATGCATGCA+GGG | + | chr3.1:32195505-32195524 | None:intergenic | 50.0% | |
| TAGCAGGCCATCTTGGAAGA+AGG | - | chr3.1:32196512-32196531 | MS.gene69499:CDS | 50.0% | |
| TCACCCAGCAATCTACAGCT+TGG | - | chr3.1:32196233-32196252 | MS.gene69499:intron | 50.0% | |
| ! | ATTACCAAGGCCGCTTTCCA+TGG | - | chr3.1:32195669-32195688 | MS.gene69499:intron | 50.0% |
| ! | TTACCAAGGCCGCTTTCCAT+GGG | - | chr3.1:32195670-32195689 | MS.gene69499:intron | 50.0% |
| CCTCTCGTTCCCATGGAAAG+CGG | + | chr3.1:32195682-32195701 | None:intergenic | 55.0% | |
| CGCTTTCCATGGGAACGAGA+GGG | - | chr3.1:32195680-32195699 | MS.gene69499:intron | 55.0% | |
| CCGCTTTCCATGGGAACGAG+AGG | - | chr3.1:32195679-32195698 | MS.gene69499:intron | 60.0% | |
| GTTCCCATGGAAAGCGGCCT+TGG | + | chr3.1:32195676-32195695 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 32195073 | 32196563 | 32195073 | ID=MS.gene69499 |
| chr3.1 | mRNA | 32195073 | 32196563 | 32195073 | ID=MS.gene69499.t1;Parent=MS.gene69499 |
| chr3.1 | exon | 32196420 | 32196563 | 32196420 | ID=MS.gene69499.t1.exon1;Parent=MS.gene69499.t1 |
| chr3.1 | CDS | 32196420 | 32196563 | 32196420 | ID=cds.MS.gene69499.t1;Parent=MS.gene69499.t1 |
| chr3.1 | exon | 32196275 | 32196323 | 32196275 | ID=MS.gene69499.t1.exon2;Parent=MS.gene69499.t1 |
| chr3.1 | CDS | 32196275 | 32196323 | 32196275 | ID=cds.MS.gene69499.t1;Parent=MS.gene69499.t1 |
| chr3.1 | exon | 32195073 | 32195527 | 32195073 | ID=MS.gene69499.t1.exon3;Parent=MS.gene69499.t1 |
| chr3.1 | CDS | 32195073 | 32195527 | 32195073 | ID=cds.MS.gene69499.t1;Parent=MS.gene69499.t1 |
| Gene Sequence |
| Protein sequence |
