Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038277.t1 | XP_003617376.1 | 92.6 | 215 | 16 | 0 | 1 | 215 | 1 | 215 | 1.60E-113 | 418.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038277.t1 | O80852 | 61.9 | 215 | 81 | 1 | 1 | 215 | 1 | 214 | 3.6e-77 | 289.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038277.t1 | G7K3B0 | 92.6 | 215 | 16 | 0 | 1 | 215 | 1 | 215 | 1.2e-113 | 418.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038277.t1 | MTR_5g090910 | 92.558 | 215 | 16 | 0 | 1 | 215 | 1 | 215 | 5.84e-149 | 413 |
MS.gene038277.t1 | MTR_5g090920 | 88.889 | 216 | 24 | 0 | 1 | 216 | 1 | 216 | 6.48e-143 | 397 |
MS.gene038277.t1 | MTR_3g450790 | 69.907 | 216 | 64 | 1 | 1 | 216 | 1 | 215 | 4.15e-110 | 315 |
MS.gene038277.t1 | MTR_3g450930 | 68.837 | 215 | 66 | 1 | 1 | 215 | 1 | 214 | 1.69e-106 | 305 |
MS.gene038277.t1 | MTR_5g090910 | 90.728 | 151 | 14 | 0 | 65 | 215 | 8 | 158 | 2.42e-100 | 288 |
MS.gene038277.t1 | MTR_3g064700 | 53.241 | 216 | 95 | 3 | 1 | 213 | 1 | 213 | 1.27e-75 | 227 |
MS.gene038277.t1 | MTR_1g026140 | 43.836 | 219 | 116 | 4 | 3 | 215 | 5 | 222 | 1.90e-57 | 181 |
MS.gene038277.t1 | MTR_1g088850 | 43.128 | 211 | 116 | 4 | 1 | 209 | 1 | 209 | 4.77e-55 | 175 |
MS.gene038277.t1 | MTR_1g088840 | 42.925 | 212 | 116 | 4 | 2 | 211 | 3 | 211 | 4.79e-55 | 175 |
MS.gene038277.t1 | MTR_1g088825 | 42.925 | 212 | 116 | 4 | 2 | 211 | 3 | 211 | 4.79e-55 | 175 |
MS.gene038277.t1 | MTR_1g088845 | 42.925 | 212 | 116 | 4 | 2 | 211 | 3 | 211 | 1.99e-52 | 168 |
MS.gene038277.t1 | MTR_1g088840 | 42.771 | 166 | 91 | 3 | 47 | 211 | 2 | 164 | 1.95e-41 | 139 |
MS.gene038277.t1 | MTR_1g088840 | 45.217 | 115 | 59 | 3 | 98 | 211 | 4 | 115 | 2.67e-26 | 98.6 |
MS.gene038277.t1 | MTR_1g492670 | 48.485 | 66 | 33 | 1 | 146 | 211 | 2 | 66 | 2.28e-15 | 68.6 |
MS.gene038277.t1 | MTR_8g098420 | 27.746 | 173 | 118 | 5 | 1 | 168 | 1 | 171 | 1.36e-11 | 61.6 |
MS.gene038277.t1 | MTR_8g098420 | 27.746 | 173 | 118 | 5 | 1 | 168 | 1 | 171 | 2.54e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038277.t1 | AT2G30860 | 61.574 | 216 | 82 | 1 | 1 | 216 | 1 | 215 | 6.14e-100 | 289 |
MS.gene038277.t1 | AT2G30870 | 57.407 | 216 | 91 | 1 | 1 | 216 | 1 | 215 | 3.06e-89 | 262 |
MS.gene038277.t1 | AT3G03190 | 48.357 | 213 | 106 | 3 | 1 | 211 | 1 | 211 | 1.46e-67 | 207 |
MS.gene038277.t1 | AT2G30860 | 60.390 | 154 | 60 | 1 | 1 | 154 | 1 | 153 | 6.47e-65 | 198 |
MS.gene038277.t1 | AT5G17220 | 44.811 | 212 | 115 | 2 | 1 | 211 | 1 | 211 | 2.08e-61 | 191 |
MS.gene038277.t1 | AT3G62760 | 45.714 | 210 | 110 | 4 | 1 | 208 | 1 | 208 | 2.13e-58 | 184 |
MS.gene038277.t1 | AT2G47730 | 43.128 | 211 | 116 | 4 | 5 | 213 | 54 | 262 | 8.39e-57 | 181 |
MS.gene038277.t1 | AT2G47730 | 43.128 | 211 | 116 | 4 | 5 | 213 | 54 | 262 | 8.39e-57 | 181 |
MS.gene038277.t1 | AT1G02930 | 41.827 | 208 | 117 | 4 | 3 | 209 | 4 | 208 | 5.56e-51 | 164 |
MS.gene038277.t1 | AT1G02930 | 41.827 | 208 | 117 | 4 | 3 | 209 | 4 | 208 | 5.56e-51 | 164 |
MS.gene038277.t1 | AT1G02920 | 42.308 | 208 | 117 | 3 | 3 | 209 | 4 | 209 | 3.11e-50 | 162 |
MS.gene038277.t1 | AT4G02520 | 40.952 | 210 | 118 | 4 | 3 | 208 | 4 | 211 | 6.67e-50 | 162 |
MS.gene038277.t1 | AT2G02930 | 41.706 | 211 | 117 | 4 | 3 | 209 | 4 | 212 | 1.13e-49 | 161 |
MS.gene038277.t1 | AT1G02950 | 40.686 | 204 | 117 | 4 | 4 | 205 | 26 | 227 | 4.88e-45 | 150 |
MS.gene038277.t1 | AT1G02950 | 40.686 | 204 | 117 | 4 | 4 | 205 | 26 | 227 | 4.88e-45 | 150 |
MS.gene038277.t1 | AT1G02950 | 40.686 | 204 | 117 | 4 | 4 | 205 | 28 | 229 | 5.33e-45 | 150 |
MS.gene038277.t1 | AT1G02950 | 40.686 | 204 | 117 | 4 | 4 | 205 | 38 | 239 | 6.62e-45 | 150 |
MS.gene038277.t1 | AT1G02940 | 37.619 | 210 | 127 | 4 | 4 | 211 | 40 | 247 | 2.27e-44 | 149 |
MS.gene038277.t1 | AT1G02940 | 37.619 | 210 | 127 | 4 | 4 | 211 | 40 | 247 | 2.27e-44 | 149 |
MS.gene038277.t1 | AT1G02940 | 37.619 | 210 | 127 | 4 | 4 | 211 | 53 | 260 | 3.01e-44 | 149 |
MS.gene038277.t1 | AT1G02940 | 37.619 | 210 | 127 | 4 | 4 | 211 | 65 | 272 | 4.19e-44 | 149 |
MS.gene038277.t1 | AT1G49860 | 39.614 | 207 | 118 | 4 | 9 | 209 | 9 | 214 | 4.65e-43 | 145 |
MS.gene038277.t1 | AT1G02950 | 38.194 | 144 | 86 | 3 | 63 | 205 | 60 | 201 | 1.07e-24 | 97.1 |
MS.gene038277.t1 | AT2G02390 | 38.806 | 67 | 41 | 0 | 11 | 77 | 18 | 84 | 4.68e-11 | 60.1 |
MS.gene038277.t1 | AT2G02380 | 36.765 | 68 | 43 | 0 | 10 | 77 | 20 | 87 | 7.64e-11 | 60.1 |
MS.gene038277.t1 | AT2G02390 | 30.612 | 98 | 66 | 1 | 11 | 108 | 18 | 113 | 9.85e-11 | 59.7 |
Find 61 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TATGAGTCACCTTCCATTTA+TGG | 0.066681 | 5.4:+71670305 | MS.gene038277:CDS |
GATGGAGACTATACCCTTTA+TGG | 0.175031 | 5.4:+71669596 | MS.gene038277:CDS |
GGATTACGTTGTTAACAAAA+TGG | 0.216621 | 5.4:+71670326 | MS.gene038277:CDS |
GACATGTCATTGTTTGTTTC+CGG | 0.216637 | 5.4:+71670146 | MS.gene038277:CDS |
TCACCCTCCAAGACATTAAT+AGG | 0.249295 | 5.4:-71669395 | None:intergenic |
TTAACAACGTAATCCATAAA+TGG | 0.252324 | 5.4:-71670318 | None:intergenic |
GTTCACAATCTGCAGCCTTT+TGG | 0.299664 | 5.4:+71669554 | MS.gene038277:intron |
GGGGAAGGATTATTTGATAA+AGG | 0.315057 | 5.4:+71670347 | MS.gene038277:CDS |
GCTATCAAAGAGCAAGTATT+TGG | 0.324415 | 5.4:+71670257 | MS.gene038277:CDS |
TCACTCTCTTCAATTGCCTT+AGG | 0.360617 | 5.4:-71670195 | None:intergenic |
AAGATACACTTCACTTAAGT+TGG | 0.374978 | 5.4:-71670450 | None:intergenic |
GATTACGTTGTTAACAAAAT+GGG | 0.385466 | 5.4:+71670327 | MS.gene038277:CDS |
ACGTTTGGCTGAGGCACAAT+GGG | 0.385990 | 5.4:-71669327 | None:intergenic |
TCTTCAATTGCCTTAGGATC+TGG | 0.386901 | 5.4:-71670189 | None:intergenic |
TGAGAAGAAAATCGAATTTG+AGG | 0.392525 | 5.4:+71669367 | MS.gene038277:CDS |
GGTTGTCCCTATTAATGTCT+TGG | 0.396323 | 5.4:+71669388 | MS.gene038277:CDS |
ACCTGAGTACCTCAAATTAC+AGG | 0.397815 | 5.4:+71669427 | MS.gene038277:CDS |
AGGAAAGACAATAGAAGAAA+AGG | 0.398452 | 5.4:+71670062 | MS.gene038277:CDS |
ACTGTTCCTGTTATTAAAGA+TGG | 0.400215 | 5.4:+71669578 | MS.gene038277:CDS |
ATCTATTTGTGCAGAATCTC+GGG | 0.401584 | 5.4:+71669987 | MS.gene038277:intron |
CATCTATTTGTGCAGAATCT+CGG | 0.405162 | 5.4:+71669986 | MS.gene038277:intron |
TAGTCTCCATCTTTAATAAC+AGG | 0.407930 | 5.4:-71669584 | None:intergenic |
TTGTTTCCGGCACTACTACC+TGG | 0.425389 | 5.4:+71670159 | MS.gene038277:CDS |
AAGACAAACCAACACACGTT+TGG | 0.462369 | 5.4:-71669342 | None:intergenic |
GTGAATTAACCTGTAATTTG+AGG | 0.477315 | 5.4:-71669436 | None:intergenic |
TGTCCCTATTAATGTCTTGG+AGG | 0.483266 | 5.4:+71669391 | MS.gene038277:CDS |
ACCTGTAATTTGAGGTACTC+AGG | 0.483901 | 5.4:-71669428 | None:intergenic |
TGAAGAGAGTGAAGCAAAGC+TGG | 0.484134 | 5.4:+71670206 | MS.gene038277:CDS |
GGAAAGACAATAGAAGAAAA+GGG | 0.487607 | 5.4:+71670063 | MS.gene038277:CDS |
TCTCAAGGAGTTGAGTTACT+AGG | 0.511988 | 5.4:+71670042 | MS.gene038277:CDS |
TCAAGAACTTTGTTCCATGA+TGG | 0.514235 | 5.4:-71670414 | None:intergenic |
AGGATTATTTGATAAAGGAT+AGG | 0.514814 | 5.4:+71670352 | MS.gene038277:CDS |
CGTTGTTAACAAAATGGGGA+AGG | 0.515638 | 5.4:+71670332 | MS.gene038277:CDS |
GTGCCGCCAGGTAGTAGTGC+CGG | 0.515816 | 5.4:-71670165 | None:intergenic |
CACCCTCCAAGACATTAATA+GGG | 0.516622 | 5.4:-71669394 | None:intergenic |
ATACACTTCACTTAAGTTGG+AGG | 0.517811 | 5.4:-71670447 | None:intergenic |
ATAGGAAGTATGTAAGTGCT+TGG | 0.518602 | 5.4:+71670370 | MS.gene038277:CDS |
GTCCCTATTAATGTCTTGGA+GGG | 0.525222 | 5.4:+71669392 | MS.gene038277:CDS |
ATAACAGGAACAGTTCCAAA+AGG | 0.526229 | 5.4:-71669569 | None:intergenic |
CACGTTTGGCTGAGGCACAA+TGG | 0.531574 | 5.4:-71669328 | None:intergenic |
ACCATGGTAGTGAAGGTGTA+TGG | 0.535696 | 5.4:+71669302 | None:intergenic |
TTAGGATCTGGAGTGCCGCC+AGG | 0.537800 | 5.4:-71670177 | None:intergenic |
GGAAGTATGTAAGTGCTTGG+TGG | 0.543655 | 5.4:+71670373 | MS.gene038277:CDS |
CATGTCAAATTGTATGCTGA+TGG | 0.544573 | 5.4:-71670129 | None:intergenic |
TCAAAGAGCAAGTATTTGGC+TGG | 0.546465 | 5.4:+71670261 | MS.gene038277:CDS |
TGGCGGCACTCCAGATCCTA+AGG | 0.551531 | 5.4:+71670179 | MS.gene038277:CDS |
TGCCTCAGCCAAACGTGTGT+TGG | 0.560095 | 5.4:+71669334 | MS.gene038277:CDS |
AAACCAAACCATGGTAGTGA+AGG | 0.577644 | 5.4:+71669295 | None:intergenic |
ATTACGTTGTTAACAAAATG+GGG | 0.582699 | 5.4:+71670328 | MS.gene038277:CDS |
AACCAACACACGTTTGGCTG+AGG | 0.583408 | 5.4:-71669336 | None:intergenic |
TATTGAACATTTATGAAGAG+AGG | 0.585284 | 5.4:+71670235 | MS.gene038277:CDS |
CAACGTAATCCATAAATGGA+AGG | 0.591331 | 5.4:-71670314 | None:intergenic |
GAGTGAAGCAAAGCTGGTGA+AGG | 0.592200 | 5.4:+71670212 | MS.gene038277:CDS |
ACCATACACCTTCACTACCA+TGG | 0.604095 | 5.4:-71669303 | None:intergenic |
AAAAGGGTCTTGTAGAACAA+TGG | 0.613030 | 5.4:+71670079 | MS.gene038277:CDS |
ATATAAGTAGTAGACCATCA+TGG | 0.637766 | 5.4:+71670400 | MS.gene038277:CDS |
ATGTCAAATTGTATGCTGAT+GGG | 0.660826 | 5.4:-71670128 | None:intergenic |
TCAAATTGTATGCTGATGGG+TGG | 0.674424 | 5.4:-71670125 | None:intergenic |
GAAGGTGACTCATATCAGCA+AGG | 0.682286 | 5.4:-71670296 | None:intergenic |
CGTTTGGCTGAGGCACAATG+GGG | 0.732376 | 5.4:-71669326 | None:intergenic |
TTTCCGGCACTACTACCTGG+CGG | 0.741511 | 5.4:+71670162 | MS.gene038277:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAACATATAACCAATAGTAT+TGG | - | chr5.4:71669829-71669848 | None:intergenic | 20.0% |
!! | TCTTATCTACATATTTGATA+TGG | + | chr5.4:71669667-71669686 | MS.gene038277:intron | 20.0% |
!! | TTGGTTATATGTTTAAATCT+TGG | + | chr5.4:71669835-71669854 | MS.gene038277:intron | 20.0% |
! | AGGATTATTTGATAAAGGAT+AGG | + | chr5.4:71670352-71670371 | MS.gene038277:CDS | 25.0% |
! | ATTACGTTGTTAACAAAATG+GGG | + | chr5.4:71670328-71670347 | MS.gene038277:CDS | 25.0% |
! | GATTACGTTGTTAACAAAAT+GGG | + | chr5.4:71670327-71670346 | MS.gene038277:CDS | 25.0% |
! | TATTGAACATTTATGAAGAG+AGG | + | chr5.4:71670235-71670254 | MS.gene038277:CDS | 25.0% |
! | TCAACAAGATAATACACTAA+TGG | - | chr5.4:71669954-71669973 | None:intergenic | 25.0% |
! | TTAACAACGTAATCCATAAA+TGG | - | chr5.4:71670321-71670340 | None:intergenic | 25.0% |
!! | CCTTGTTTAATATGCTAAAA+AGG | + | chr5.4:71669479-71669498 | MS.gene038277:intron | 25.0% |
!!! | AAGACCTCAATTTTTTTTTG+AGG | + | chr5.4:71669750-71669769 | MS.gene038277:intron | 25.0% |
!!! | AGACCTCAATTTTTTTTTGA+GGG | + | chr5.4:71669751-71669770 | MS.gene038277:intron | 25.0% |
!!! | CAAGATGTTTTAACCATAAA+GGG | - | chr5.4:71669612-71669631 | None:intergenic | 25.0% |
!!! | CCTTTTTAGCATATTAAACA+AGG | - | chr5.4:71669482-71669501 | None:intergenic | 25.0% |
!!! | GGTTTTATGTCTCAAAATTT+TGG | + | chr5.4:71669719-71669738 | MS.gene038277:intron | 25.0% |
!!! | TCAAGATGTTTTAACCATAA+AGG | - | chr5.4:71669613-71669632 | None:intergenic | 25.0% |
ACTGTTCCTGTTATTAAAGA+TGG | + | chr5.4:71669578-71669597 | MS.gene038277:CDS | 30.0% | |
AGGAAAGACAATAGAAGAAA+AGG | + | chr5.4:71670062-71670081 | MS.gene038277:CDS | 30.0% | |
ATATAAGTAGTAGACCATCA+TGG | + | chr5.4:71670400-71670419 | MS.gene038277:CDS | 30.0% | |
ATGTCAAATTGTATGCTGAT+GGG | - | chr5.4:71670131-71670150 | None:intergenic | 30.0% | |
GCTGAAAAATATAGATCTCA+AGG | + | chr5.4:71670027-71670046 | MS.gene038277:CDS | 30.0% | |
GCTTGTAAACACTTTAAACA+AGG | + | chr5.4:71669698-71669717 | MS.gene038277:intron | 30.0% | |
GGAAAGACAATAGAAGAAAA+GGG | + | chr5.4:71670063-71670082 | MS.gene038277:CDS | 30.0% | |
GGATTACGTTGTTAACAAAA+TGG | + | chr5.4:71670326-71670345 | MS.gene038277:CDS | 30.0% | |
GTGAATTAACCTGTAATTTG+AGG | - | chr5.4:71669439-71669458 | None:intergenic | 30.0% | |
TAGTCTCCATCTTTAATAAC+AGG | - | chr5.4:71669587-71669606 | None:intergenic | 30.0% | |
TGAGAAGAAAATCGAATTTG+AGG | + | chr5.4:71669367-71669386 | MS.gene038277:CDS | 30.0% | |
! | ATAAGTAGAAAAGCATGACA+TGG | - | chr5.4:71669638-71669657 | None:intergenic | 30.0% |
! | CATATAACCAATAGTATTGG+AGG | - | chr5.4:71669826-71669845 | None:intergenic | 30.0% |
! | TAAGTAGAAAAGCATGACAT+GGG | - | chr5.4:71669637-71669656 | None:intergenic | 30.0% |
ATAACAGGAACAGTTCCAAA+AGG | - | chr5.4:71669572-71669591 | None:intergenic | 35.0% | |
ATCTATTTGTGCAGAATCTC+GGG | + | chr5.4:71669987-71670006 | MS.gene038277:intron | 35.0% | |
CAACGTAATCCATAAATGGA+AGG | - | chr5.4:71670317-71670336 | None:intergenic | 35.0% | |
CATCTATTTGTGCAGAATCT+CGG | + | chr5.4:71669986-71670005 | MS.gene038277:intron | 35.0% | |
CATGTCAAATTGTATGCTGA+TGG | - | chr5.4:71670132-71670151 | None:intergenic | 35.0% | |
CCACCCTCAAAAAAAAATTG+AGG | - | chr5.4:71669757-71669776 | None:intergenic | 35.0% | |
GAAAAGACCTCCAATACTAT+TGG | + | chr5.4:71669816-71669835 | MS.gene038277:intron | 35.0% | |
GACATGTCATTGTTTGTTTC+CGG | + | chr5.4:71670146-71670165 | MS.gene038277:CDS | 35.0% | |
GCTATCAAAGAGCAAGTATT+TGG | + | chr5.4:71670257-71670276 | MS.gene038277:CDS | 35.0% | |
GGATGAAAGAAAAACAGAAG+AGG | - | chr5.4:71669461-71669480 | None:intergenic | 35.0% | |
GGGGAAGGATTATTTGATAA+AGG | + | chr5.4:71670347-71670366 | MS.gene038277:CDS | 35.0% | |
TATGAGTCACCTTCCATTTA+TGG | + | chr5.4:71670305-71670324 | MS.gene038277:CDS | 35.0% | |
TCAAGAACTTTGTTCCATGA+TGG | - | chr5.4:71670417-71670436 | None:intergenic | 35.0% | |
TTGAGGGTGGACAAAATATT+TGG | + | chr5.4:71669767-71669786 | MS.gene038277:intron | 35.0% | |
! | AAAAGGGTCTTGTAGAACAA+TGG | + | chr5.4:71670079-71670098 | MS.gene038277:CDS | 35.0% |
! | AAGTAGAAAAGCATGACATG+GGG | - | chr5.4:71669636-71669655 | None:intergenic | 35.0% |
! | ATAGGAAGTATGTAAGTGCT+TGG | + | chr5.4:71670370-71670389 | MS.gene038277:CDS | 35.0% |
!!! | CCTCAATTTTTTTTTGAGGG+TGG | + | chr5.4:71669754-71669773 | MS.gene038277:intron | 35.0% |
AAGACAAACCAACACACGTT+TGG | - | chr5.4:71669345-71669364 | None:intergenic | 40.0% | |
ACCTGAGTACCTCAAATTAC+AGG | + | chr5.4:71669427-71669446 | MS.gene038277:CDS | 40.0% | |
CACCCTCCAAGACATTAATA+GGG | - | chr5.4:71669397-71669416 | None:intergenic | 40.0% | |
CGTTGTTAACAAAATGGGGA+AGG | + | chr5.4:71670332-71670351 | MS.gene038277:CDS | 40.0% | |
GATGGAGACTATACCCTTTA+TGG | + | chr5.4:71669596-71669615 | MS.gene038277:CDS | 40.0% | |
GGTTGTCCCTATTAATGTCT+TGG | + | chr5.4:71669388-71669407 | MS.gene038277:CDS | 40.0% | |
GTCCCTATTAATGTCTTGGA+GGG | + | chr5.4:71669392-71669411 | MS.gene038277:CDS | 40.0% | |
TCAAAGAGCAAGTATTTGGC+TGG | + | chr5.4:71670261-71670280 | MS.gene038277:CDS | 40.0% | |
TCAAATTGTATGCTGATGGG+TGG | - | chr5.4:71670128-71670147 | None:intergenic | 40.0% | |
TCACCCTCCAAGACATTAAT+AGG | - | chr5.4:71669398-71669417 | None:intergenic | 40.0% | |
TCACTCTCTTCAATTGCCTT+AGG | - | chr5.4:71670198-71670217 | None:intergenic | 40.0% | |
TCTCAAGGAGTTGAGTTACT+AGG | + | chr5.4:71670042-71670061 | MS.gene038277:CDS | 40.0% | |
TCTTCAATTGCCTTAGGATC+TGG | - | chr5.4:71670192-71670211 | None:intergenic | 40.0% | |
TGTCCCTATTAATGTCTTGG+AGG | + | chr5.4:71669391-71669410 | MS.gene038277:CDS | 40.0% | |
! | ACCTGTAATTTGAGGTACTC+AGG | - | chr5.4:71669431-71669450 | None:intergenic | 40.0% |
GAAGGTGACTCATATCAGCA+AGG | - | chr5.4:71670299-71670318 | None:intergenic | 45.0% | |
TGAAGAGAGTGAAGCAAAGC+TGG | + | chr5.4:71670206-71670225 | MS.gene038277:CDS | 45.0% | |
! | GGAAGTATGTAAGTGCTTGG+TGG | + | chr5.4:71670373-71670392 | MS.gene038277:CDS | 45.0% |
! | GTTCACAATCTGCAGCCTTT+TGG | + | chr5.4:71669554-71669573 | MS.gene038277:intron | 45.0% |
!!! | ATAAAAAAAATCATTTTAAA+AGG | + | chr5.4:71669875-71669894 | MS.gene038277:intron | 5.0% |
!!! | TTTTTTTATAAAAATATTTG+TGG | - | chr5.4:71669864-71669883 | None:intergenic | 5.0% |
AACCAACACACGTTTGGCTG+AGG | - | chr5.4:71669339-71669358 | None:intergenic | 50.0% | |
ACGTTTGGCTGAGGCACAAT+GGG | - | chr5.4:71669330-71669349 | None:intergenic | 50.0% | |
GAGTGAAGCAAAGCTGGTGA+AGG | + | chr5.4:71670212-71670231 | MS.gene038277:CDS | 50.0% | |
TTGTTTCCGGCACTACTACC+TGG | + | chr5.4:71670159-71670178 | MS.gene038277:CDS | 50.0% | |
CACGTTTGGCTGAGGCACAA+TGG | - | chr5.4:71669331-71669350 | None:intergenic | 55.0% | |
CGTTTGGCTGAGGCACAATG+GGG | - | chr5.4:71669329-71669348 | None:intergenic | 55.0% | |
TGCCTCAGCCAAACGTGTGT+TGG | + | chr5.4:71669334-71669353 | MS.gene038277:CDS | 55.0% | |
TTTCCGGCACTACTACCTGG+CGG | + | chr5.4:71670162-71670181 | MS.gene038277:CDS | 55.0% | |
TGGCGGCACTCCAGATCCTA+AGG | + | chr5.4:71670179-71670198 | MS.gene038277:CDS | 60.0% | |
!! | TTAGGATCTGGAGTGCCGCC+AGG | - | chr5.4:71670180-71670199 | None:intergenic | 60.0% |
GTGCCGCCAGGTAGTAGTGC+CGG | - | chr5.4:71670168-71670187 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 71669305 | 71670458 | 71669305 | ID=MS.gene038277 |
chr5.4 | mRNA | 71669305 | 71670458 | 71669305 | ID=MS.gene038277.t1;Parent=MS.gene038277 |
chr5.4 | exon | 71669305 | 71669448 | 71669305 | ID=MS.gene038277.t1.exon1;Parent=MS.gene038277.t1 |
chr5.4 | CDS | 71669305 | 71669448 | 71669305 | ID=cds.MS.gene038277.t1;Parent=MS.gene038277.t1 |
chr5.4 | exon | 71669569 | 71669617 | 71669569 | ID=MS.gene038277.t1.exon2;Parent=MS.gene038277.t1 |
chr5.4 | CDS | 71669569 | 71669617 | 71669569 | ID=cds.MS.gene038277.t1;Parent=MS.gene038277.t1 |
chr5.4 | exon | 71670001 | 71670458 | 71670001 | ID=MS.gene038277.t1.exon3;Parent=MS.gene038277.t1 |
chr5.4 | CDS | 71670001 | 71670458 | 71670001 | ID=cds.MS.gene038277.t1;Parent=MS.gene038277.t1 |
Gene Sequence |
Protein sequence |