Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22195.t1 | XP_013459651.1 | 98.6 | 215 | 3 | 0 | 1 | 215 | 1 | 215 | 2.00E-119 | 438.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22195.t1 | O80852 | 61.2 | 214 | 83 | 0 | 1 | 214 | 1 | 214 | 4.7e-77 | 288.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22195.t1 | A0A072UVM3 | 98.6 | 215 | 3 | 0 | 1 | 215 | 1 | 215 | 1.4e-119 | 438.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050312 | MS.gene22195 | 0.805342 | 1.40E-49 | -1.69E-46 |
| MS.gene053294 | MS.gene22195 | 0.804444 | 2.15E-49 | -1.69E-46 |
| MS.gene053401 | MS.gene22195 | 0.803275 | 3.77E-49 | -1.69E-46 |
| MS.gene053963 | MS.gene22195 | 0.812307 | 4.53E-51 | -1.69E-46 |
| MS.gene05548 | MS.gene22195 | 0.804938 | 1.70E-49 | -1.69E-46 |
| MS.gene055555 | MS.gene22195 | 0.807491 | 4.93E-50 | -1.69E-46 |
| MS.gene058008 | MS.gene22195 | 0.810406 | 1.17E-50 | -1.69E-46 |
| MS.gene058498 | MS.gene22195 | 0.841756 | 3.92E-58 | -1.69E-46 |
| MS.gene058500 | MS.gene22195 | 0.819287 | 1.26E-52 | -1.69E-46 |
| MS.gene05952 | MS.gene22195 | 0.821247 | 4.47E-53 | -1.69E-46 |
| MS.gene059935 | MS.gene22195 | 0.802799 | 4.73E-49 | -1.69E-46 |
| MS.gene060586 | MS.gene22195 | 0.807884 | 4.07E-50 | -1.69E-46 |
| MS.gene060879 | MS.gene22195 | 0.808398 | 3.16E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene22195 | 0.810251 | 1.26E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene22195 | 0.809731 | 1.64E-50 | -1.69E-46 |
| MS.gene061243 | MS.gene22195 | 0.802832 | 4.65E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene20711 | MS.gene22195 | PPI |
| MS.gene008278 | MS.gene22195 | PPI |
| MS.gene22195 | MS.gene47714 | PPI |
| MS.gene22195 | MS.gene048743 | PPI |
| MS.gene22195 | MS.gene69499 | PPI |
| MS.gene22195 | MS.gene48032 | PPI |
| MS.gene22195 | MS.gene017062 | PPI |
| MS.gene017060 | MS.gene22195 | PPI |
| MS.gene22195 | MS.gene07192 | PPI |
| MS.gene019183 | MS.gene22195 | PPI |
| MS.gene000510 | MS.gene22195 | PPI |
| MS.gene22195 | MS.gene69505 | PPI |
| MS.gene030405 | MS.gene22195 | PPI |
| MS.gene22195 | MS.gene048797 | PPI |
| MS.gene22195 | MS.gene019181 | PPI |
| MS.gene22195 | MS.gene061566 | PPI |
| MS.gene22195 | MS.gene049699 | PPI |
| MS.gene04976 | MS.gene22195 | PPI |
| MS.gene038277 | MS.gene22195 | PPI |
| MS.gene005621 | MS.gene22195 | PPI |
| MS.gene22195 | MS.gene22196 | PPI |
| MS.gene22195 | MS.gene48030 | PPI |
| MS.gene22195 | MS.gene049706 | PPI |
| MS.gene22195 | MS.gene05016 | PPI |
| MS.gene22195 | MS.gene03034 | PPI |
| MS.gene008337 | MS.gene22195 | PPI |
| MS.gene22195 | MS.gene22188 | PPI |
| MS.gene22195 | MS.gene008334 | PPI |
| MS.gene22195 | MS.gene048703 | PPI |
| MS.gene22195 | MS.gene83384 | PPI |
| MS.gene22195 | MS.gene72151 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22195.t1 | MTR_3g450790 | 98.605 | 215 | 3 | 0 | 1 | 215 | 1 | 215 | 1.03e-156 | 432 |
| MS.gene22195.t1 | MTR_3g450930 | 77.209 | 215 | 49 | 0 | 1 | 215 | 1 | 215 | 1.75e-126 | 356 |
| MS.gene22195.t1 | MTR_5g090920 | 71.296 | 216 | 61 | 1 | 1 | 215 | 1 | 216 | 1.40e-111 | 318 |
| MS.gene22195.t1 | MTR_5g090910 | 68.519 | 216 | 67 | 1 | 1 | 215 | 1 | 216 | 2.36e-109 | 313 |
| MS.gene22195.t1 | MTR_3g064700 | 57.277 | 213 | 90 | 1 | 1 | 212 | 1 | 213 | 4.71e-86 | 253 |
| MS.gene22195.t1 | MTR_5g090910 | 69.079 | 152 | 46 | 1 | 65 | 215 | 8 | 159 | 3.33e-73 | 219 |
| MS.gene22195.t1 | MTR_1g088850 | 49.048 | 210 | 104 | 3 | 1 | 208 | 1 | 209 | 1.79e-70 | 214 |
| MS.gene22195.t1 | MTR_1g026140 | 48.624 | 218 | 106 | 3 | 3 | 214 | 5 | 222 | 1.10e-67 | 207 |
| MS.gene22195.t1 | MTR_1g088840 | 41.905 | 210 | 120 | 2 | 2 | 210 | 3 | 211 | 2.14e-54 | 173 |
| MS.gene22195.t1 | MTR_1g088825 | 41.905 | 210 | 120 | 2 | 2 | 210 | 3 | 211 | 2.14e-54 | 173 |
| MS.gene22195.t1 | MTR_1g088845 | 41.905 | 210 | 120 | 2 | 2 | 210 | 3 | 211 | 6.07e-52 | 167 |
| MS.gene22195.t1 | MTR_1g088840 | 42.683 | 164 | 93 | 1 | 47 | 210 | 2 | 164 | 1.87e-41 | 139 |
| MS.gene22195.t1 | MTR_1g088840 | 44.248 | 113 | 62 | 1 | 98 | 210 | 4 | 115 | 3.68e-25 | 95.5 |
| MS.gene22195.t1 | MTR_8g098420 | 30.994 | 171 | 114 | 3 | 1 | 167 | 1 | 171 | 1.57e-17 | 77.4 |
| MS.gene22195.t1 | MTR_8g098420 | 29.381 | 194 | 126 | 4 | 1 | 190 | 1 | 187 | 3.87e-17 | 77.8 |
| MS.gene22195.t1 | MTR_1g492670 | 46.970 | 66 | 34 | 1 | 145 | 210 | 2 | 66 | 8.01e-14 | 64.3 |
| MS.gene22195.t1 | MTR_4g134370 | 37.234 | 94 | 58 | 1 | 15 | 108 | 29 | 121 | 1.93e-12 | 64.3 |
| MS.gene22195.t1 | MTR_2g005570 | 26.111 | 180 | 106 | 5 | 39 | 208 | 42 | 204 | 2.68e-12 | 65.5 |
| MS.gene22195.t1 | MTR_2g005570 | 25.556 | 180 | 107 | 5 | 39 | 208 | 42 | 204 | 9.80e-12 | 63.9 |
| MS.gene22195.t1 | MTR_8g098430 | 27.326 | 172 | 115 | 5 | 3 | 167 | 5 | 173 | 9.88e-12 | 62.8 |
| MS.gene22195.t1 | MTR_4g134380 | 28.571 | 154 | 103 | 4 | 15 | 166 | 29 | 177 | 1.70e-11 | 62.0 |
| MS.gene22195.t1 | MTR_4g134770 | 24.713 | 174 | 117 | 3 | 39 | 208 | 40 | 203 | 5.69e-11 | 61.6 |
| MS.gene22195.t1 | MTR_4g134770 | 24.713 | 174 | 117 | 3 | 39 | 208 | 5 | 168 | 6.52e-11 | 61.2 |
| MS.gene22195.t1 | MTR_4g134380 | 28.571 | 147 | 98 | 4 | 15 | 159 | 29 | 170 | 7.02e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22195.t1 | AT2G30860 | 61.215 | 214 | 83 | 0 | 1 | 214 | 1 | 214 | 7.82e-99 | 286 |
| MS.gene22195.t1 | AT2G30870 | 58.605 | 215 | 89 | 0 | 1 | 215 | 1 | 215 | 1.84e-96 | 280 |
| MS.gene22195.t1 | AT3G03190 | 51.402 | 214 | 103 | 1 | 1 | 213 | 1 | 214 | 1.62e-76 | 229 |
| MS.gene22195.t1 | AT5G17220 | 47.867 | 211 | 109 | 1 | 1 | 210 | 1 | 211 | 3.23e-68 | 208 |
| MS.gene22195.t1 | AT3G62760 | 47.847 | 209 | 106 | 3 | 1 | 207 | 1 | 208 | 4.76e-67 | 206 |
| MS.gene22195.t1 | AT2G30860 | 60.390 | 154 | 61 | 0 | 1 | 154 | 1 | 154 | 1.58e-65 | 200 |
| MS.gene22195.t1 | AT1G02930 | 44.928 | 207 | 111 | 3 | 3 | 208 | 4 | 208 | 3.01e-55 | 175 |
| MS.gene22195.t1 | AT1G02930 | 44.928 | 207 | 111 | 3 | 3 | 208 | 4 | 208 | 3.01e-55 | 175 |
| MS.gene22195.t1 | AT2G47730 | 43.333 | 210 | 116 | 3 | 5 | 212 | 54 | 262 | 2.32e-54 | 174 |
| MS.gene22195.t1 | AT2G47730 | 43.333 | 210 | 116 | 3 | 5 | 212 | 54 | 262 | 2.32e-54 | 174 |
| MS.gene22195.t1 | AT1G02920 | 45.411 | 207 | 111 | 2 | 3 | 208 | 4 | 209 | 8.92e-54 | 171 |
| MS.gene22195.t1 | AT2G02930 | 43.810 | 210 | 113 | 3 | 3 | 208 | 4 | 212 | 4.37e-52 | 167 |
| MS.gene22195.t1 | AT4G02520 | 42.584 | 209 | 115 | 3 | 3 | 207 | 4 | 211 | 5.99e-52 | 167 |
| MS.gene22195.t1 | AT1G49860 | 42.365 | 203 | 114 | 2 | 16 | 215 | 19 | 221 | 1.83e-51 | 167 |
| MS.gene22195.t1 | AT1G02950 | 40.686 | 204 | 118 | 3 | 4 | 205 | 28 | 230 | 1.24e-46 | 154 |
| MS.gene22195.t1 | AT1G02950 | 40.686 | 204 | 118 | 3 | 4 | 205 | 38 | 240 | 1.32e-46 | 154 |
| MS.gene22195.t1 | AT1G02950 | 40.686 | 204 | 118 | 3 | 4 | 205 | 26 | 228 | 1.40e-46 | 154 |
| MS.gene22195.t1 | AT1G02950 | 40.686 | 204 | 118 | 3 | 4 | 205 | 26 | 228 | 1.40e-46 | 154 |
| MS.gene22195.t1 | AT1G02940 | 37.799 | 209 | 127 | 3 | 4 | 210 | 53 | 260 | 4.28e-45 | 151 |
| MS.gene22195.t1 | AT1G02940 | 37.799 | 209 | 127 | 3 | 4 | 210 | 40 | 247 | 4.46e-45 | 150 |
| MS.gene22195.t1 | AT1G02940 | 37.799 | 209 | 127 | 3 | 4 | 210 | 40 | 247 | 4.46e-45 | 150 |
| MS.gene22195.t1 | AT1G02940 | 37.799 | 209 | 127 | 3 | 4 | 210 | 65 | 272 | 4.78e-45 | 151 |
| MS.gene22195.t1 | AT1G02950 | 37.241 | 145 | 89 | 2 | 62 | 205 | 59 | 202 | 3.54e-26 | 100 |
| MS.gene22195.t1 | AT5G41240 | 28.000 | 200 | 138 | 3 | 1 | 194 | 1 | 200 | 2.60e-14 | 71.6 |
| MS.gene22195.t1 | AT5G41210 | 26.108 | 203 | 144 | 4 | 1 | 197 | 2 | 204 | 2.54e-13 | 67.4 |
| MS.gene22195.t1 | AT5G41220 | 27.000 | 200 | 140 | 3 | 1 | 194 | 1 | 200 | 2.68e-12 | 65.5 |
| MS.gene22195.t1 | AT1G57720 | 27.168 | 173 | 114 | 4 | 39 | 208 | 40 | 203 | 6.78e-12 | 64.3 |
| MS.gene22195.t1 | AT1G57720 | 27.168 | 173 | 114 | 4 | 39 | 208 | 40 | 203 | 6.78e-12 | 64.3 |
Find 55 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTCTCTTCAATCGCTTTC+TGG | 0.118073 | 3.4:+40698551 | None:intergenic |
| TGTTCTGTTTGCACCGTTAA+AGG | 0.197508 | 3.4:-40698587 | MS.gene22195:CDS |
| TCAAACTGGGAGAGGAAATT+TGG | 0.210954 | 3.4:-40698404 | MS.gene22195:CDS |
| TCTTGCATTTGGTCACTATT+TGG | 0.246792 | 3.4:-40698431 | MS.gene22195:CDS |
| CAGCCTATGGTTCTCCAAAA+AGG | 0.287014 | 3.4:-40699828 | MS.gene22195:CDS |
| CACTATTTGGTGAATCAAAC+TGG | 0.321868 | 3.4:-40698418 | MS.gene22195:CDS |
| GATCTTAGCCATCTTGCATT+TGG | 0.333958 | 3.4:-40698442 | MS.gene22195:CDS |
| AACATGGTTGTGAAAGTTTA+CGG | 0.352941 | 3.4:-40699853 | MS.gene22195:CDS |
| GATGGTGATTATACCCTCTA+TGG | 0.366109 | 3.4:-40699583 | MS.gene22195:intron |
| TTCAATCGCTTTCTGGTCAC+CGG | 0.398721 | 3.4:+40698558 | None:intergenic |
| AACCTGCAGTTTGAGAAAAT+CGG | 0.405623 | 3.4:+40699726 | None:intergenic |
| AACCAAGGAACCGATTTGTT+AGG | 0.406691 | 3.4:-40698700 | MS.gene22195:CDS |
| TCACCGGTTTCACCCTTTAA+CGG | 0.407596 | 3.4:+40698574 | None:intergenic |
| TACTGTCTTTCCTAACAAAT+CGG | 0.410470 | 3.4:+40698690 | None:intergenic |
| TTCCTAACAAATCGGTTCCT+TGG | 0.418961 | 3.4:+40698698 | None:intergenic |
| GTTCTGTTTGCACCGTTAAA+GGG | 0.425408 | 3.4:-40698586 | MS.gene22195:CDS |
| ACCTGCAGTTTGAGAAAATC+GGG | 0.447227 | 3.4:+40699727 | None:intergenic |
| ATGACCAAGCTGTAGATTGC+TGG | 0.457280 | 3.4:+40698613 | None:intergenic |
| TGTTGATATTGATCTCTTCA+AGG | 0.461501 | 3.4:-40699764 | MS.gene22195:CDS |
| AGGAAAGACAGTAGAAGAAA+GGG | 0.463386 | 3.4:-40698680 | MS.gene22195:CDS |
| GCACCGTTAAAGGGTGAAAC+CGG | 0.464712 | 3.4:-40698577 | MS.gene22195:CDS |
| TAGGAAAGACAGTAGAAGAA+AGG | 0.466401 | 3.4:-40698681 | MS.gene22195:CDS |
| ATATTAGTAGCAGGCCATCT+TGG | 0.502723 | 3.4:-40698345 | MS.gene22195:CDS |
| TATATAAATACCCTGTGTAA+TGG | 0.503081 | 3.4:-40698306 | None:intergenic |
| AAAGTTTACGGACCAGCCTA+TGG | 0.503832 | 3.4:-40699841 | MS.gene22195:CDS |
| GAGGAAATTTGGTTAGAGAG+AGG | 0.505432 | 3.4:-40698393 | MS.gene22195:CDS |
| TCAAGAACCTTCTTCCAAGA+TGG | 0.510216 | 3.4:+40698331 | None:intergenic |
| GAGGTTCCTCTTGTTCAAGA+TGG | 0.514108 | 3.4:-40699601 | MS.gene22195:CDS |
| TGTTGGATATTTACGAGGAA+AGG | 0.517509 | 3.4:-40698510 | MS.gene22195:CDS |
| TAGCAGGCCATCTTGGAAGA+AGG | 0.522731 | 3.4:-40698338 | MS.gene22195:CDS |
| ACAAGAGGAACCTCTCCAAA+AGG | 0.531793 | 3.4:+40699610 | None:intergenic |
| TCAAAGACAAAGTACTTGGC+TGG | 0.539946 | 3.4:-40698484 | MS.gene22195:CDS |
| GCTCTCAAAGACAAAGTACT+TGG | 0.540511 | 3.4:-40698488 | MS.gene22195:CDS |
| GTTGATATTGATCTCTTCAA+GGG | 0.544872 | 3.4:-40699763 | MS.gene22195:CDS |
| TTGGTGAATCAAACTGGGAG+AGG | 0.560271 | 3.4:-40698412 | MS.gene22195:CDS |
| GATGAGGTGGCTAACCATAG+AGG | 0.563044 | 3.4:+40699569 | None:intergenic |
| CACAAACAAAACCATTACAC+AGG | 0.565632 | 3.4:+40698295 | None:intergenic |
| GGTGGGATGATATTAGTAGC+AGG | 0.571858 | 3.4:-40698354 | MS.gene22195:CDS |
| TGAAAAGCTCAAGAAAGTGT+TGG | 0.575500 | 3.4:-40698527 | MS.gene22195:CDS |
| TAATCACCATCTTGAACAAG+AGG | 0.579904 | 3.4:+40699595 | None:intergenic |
| TCACCCAGCAATCTACAGCT+TGG | 0.583361 | 3.4:-40698617 | MS.gene22195:CDS |
| AATAGTGACCAAATGCAAGA+TGG | 0.590599 | 3.4:+40698434 | None:intergenic |
| ATGAGGTGGCTAACCATAGA+GGG | 0.592466 | 3.4:+40699570 | None:intergenic |
| AAAGGGGACTTGTGGAACAA+TGG | 0.610264 | 3.4:-40698663 | MS.gene22195:CDS |
| GAAACATGTGAGTGCATGGT+GGG | 0.618318 | 3.4:-40698371 | MS.gene22195:CDS |
| AGTAGAAGAAAGGGGACTTG+TGG | 0.620270 | 3.4:-40698671 | MS.gene22195:CDS |
| TGACCAAGCTGTAGATTGCT+GGG | 0.623969 | 3.4:+40698614 | None:intergenic |
| TGTGGAACAATGGCTTGAAG+TGG | 0.629943 | 3.4:-40698653 | MS.gene22195:CDS |
| AGAGGAAACATGTGAGTGCA+TGG | 0.644423 | 3.4:-40698375 | MS.gene22195:CDS |
| GGAAAGACAGTAGAAGAAAG+GGG | 0.650622 | 3.4:-40698679 | MS.gene22195:CDS |
| ACTATTTGGTGAATCAAACT+GGG | 0.660675 | 3.4:-40698417 | MS.gene22195:CDS |
| GAAAGTGTTGGATATTTACG+AGG | 0.681348 | 3.4:-40698515 | MS.gene22195:CDS |
| GCAGAAAAGTACAAGAACCA+AGG | 0.682353 | 3.4:-40698715 | MS.gene22195:CDS |
| ACAAACAAAACCATTACACA+GGG | 0.696248 | 3.4:+40698296 | None:intergenic |
| GGAAACATGTGAGTGCATGG+TGG | 0.712862 | 3.4:-40698372 | MS.gene22195:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAAATAATCAGTAATTT+TGG | + | chr3.4:40699217-40699236 | None:intergenic | 10.0% |
| !!! | ATTAAGTTGAATAAAATTGA+AGG | + | chr3.4:40698478-40698497 | None:intergenic | 15.0% |
| !!! | GTTTATAAACATTTTTGAAA+AGG | + | chr3.4:40699151-40699170 | None:intergenic | 15.0% |
| !!! | TTGGATTATATTTTAAACTT+TGG | - | chr3.4:40698671-40698690 | MS.gene22195:CDS | 15.0% |
| !! | AAACTTTCTCAATACATTAA+GGG | - | chr3.4:40699167-40699186 | MS.gene22195:intron | 20.0% |
| !! | AAATTGCAGAAAATAGTAAA+AGG | + | chr3.4:40698615-40698634 | None:intergenic | 20.0% |
| !! | GAATAATCTATTCATACTAA+TGG | - | chr3.4:40699298-40699317 | MS.gene22195:intron | 20.0% |
| !! | TAAACTTTCTCAATACATTA+AGG | - | chr3.4:40699166-40699185 | MS.gene22195:intron | 20.0% |
| !!! | AAAATAAACAGCAATTTGTT+CGG | - | chr3.4:40698971-40698990 | MS.gene22195:intron | 20.0% |
| !!! | ATATTTTAAACTTTGGATCA+GGG | - | chr3.4:40698678-40698697 | MS.gene22195:CDS | 20.0% |
| !!! | TATATTTTAAACTTTGGATC+AGG | - | chr3.4:40698677-40698696 | MS.gene22195:CDS | 20.0% |
| ! | AAAACACATAAATCAGGATA+AGG | + | chr3.4:40698762-40698781 | None:intergenic | 25.0% |
| ! | AAACACATAAATCAGGATAA+GGG | + | chr3.4:40698761-40698780 | None:intergenic | 25.0% |
| ! | AGATAATGATTGTTTAAGCT+AGG | + | chr3.4:40698854-40698873 | None:intergenic | 25.0% |
| ! | AGCTTAAACAATCATTATCT+AGG | - | chr3.4:40698854-40698873 | MS.gene22195:intron | 25.0% |
| !! | GGTCTTATGTTAGTAATTTA+TGG | + | chr3.4:40699130-40699149 | None:intergenic | 25.0% |
| !!! | AAACGAATTTTTCAGAATCT+CGG | - | chr3.4:40699403-40699422 | MS.gene22195:intron | 25.0% |
| !!! | CTGATTTATGTGTTTTTAGA+GGG | - | chr3.4:40698766-40698785 | MS.gene22195:intron | 25.0% |
| AAAATAGTAAAAGGATGAGG+TGG | + | chr3.4:40698606-40698625 | None:intergenic | 30.0% | |
| AACACATTTCAAGCATAATC+AGG | + | chr3.4:40699048-40699067 | None:intergenic | 30.0% | |
| ATGTCTACTACTTGTCAATT+TGG | - | chr3.4:40699103-40699122 | MS.gene22195:intron | 30.0% | |
| ATTAAGGGACTATAGTAACA+CGG | - | chr3.4:40699182-40699201 | MS.gene22195:intron | 30.0% | |
| CAGAAAATAGTAAAAGGATG+AGG | + | chr3.4:40698609-40698628 | None:intergenic | 30.0% | |
| GCTGAAAATATAAGAGACAT+AGG | + | chr3.4:40698530-40698549 | None:intergenic | 30.0% | |
| GTCATTTCTATCTGTTAATG+TGG | - | chr3.4:40699276-40699295 | MS.gene22195:intron | 30.0% | |
| GTTGATATTGATCTCTTCAA+GGG | - | chr3.4:40698396-40698415 | MS.gene22195:CDS | 30.0% | |
| TACTGTCTTTCCTAACAAAT+CGG | + | chr3.4:40699472-40699491 | None:intergenic | 30.0% | |
| TCTAGGCTTAATTTATCTCT+CGG | - | chr3.4:40698871-40698890 | MS.gene22195:intron | 30.0% | |
| TGGTTAATCATCTTCACTTA+AGG | - | chr3.4:40698797-40698816 | MS.gene22195:intron | 30.0% | |
| TGTTGATATTGATCTCTTCA+AGG | - | chr3.4:40698395-40698414 | MS.gene22195:CDS | 30.0% | |
| ! | ACAAGTAGTAGACATTTTCA+AGG | + | chr3.4:40699098-40699117 | None:intergenic | 30.0% |
| ! | ACTATTTGGTGAATCAAACT+GGG | - | chr3.4:40699742-40699761 | MS.gene22195:CDS | 30.0% |
| ! | CCTCTAAAAACACATAAATC+AGG | + | chr3.4:40698768-40698787 | None:intergenic | 30.0% |
| ! | CTCTTATATTTTCAGCCTTT+TGG | - | chr3.4:40698534-40698553 | MS.gene22195:CDS | 30.0% |
| !! | AACGAATTTTTCAGAATCTC+GGG | - | chr3.4:40699404-40699423 | MS.gene22195:intron | 30.0% |
| !!! | CCTGATTTATGTGTTTTTAG+AGG | - | chr3.4:40698765-40698784 | MS.gene22195:intron | 30.0% |
| AACCTGCAGTTTGAGAAAAT+CGG | + | chr3.4:40698436-40698455 | None:intergenic | 35.0% | |
| AATAGTGACCAAATGCAAGA+TGG | + | chr3.4:40699728-40699747 | None:intergenic | 35.0% | |
| ACTATAGTAACACGGCTTTA+GGG | - | chr3.4:40699190-40699209 | MS.gene22195:intron | 35.0% | |
| AGGAAAGACAGTAGAAGAAA+GGG | - | chr3.4:40699479-40699498 | MS.gene22195:intron | 35.0% | |
| TAATCACCATCTTGAACAAG+AGG | + | chr3.4:40698567-40698586 | None:intergenic | 35.0% | |
| TAGGAAAGACAGTAGAAGAA+AGG | - | chr3.4:40699478-40699497 | MS.gene22195:intron | 35.0% | |
| TCTTGCATTTGGTCACTATT+TGG | - | chr3.4:40699728-40699747 | MS.gene22195:intron | 35.0% | |
| TGTTGGATATTTACGAGGAA+AGG | - | chr3.4:40699649-40699668 | MS.gene22195:intron | 35.0% | |
| ! | CACTATTTGGTGAATCAAAC+TGG | - | chr3.4:40699741-40699760 | MS.gene22195:CDS | 35.0% |
| ! | CAGGGTGTTACATTTAATTG+AGG | - | chr3.4:40698696-40698715 | MS.gene22195:CDS | 35.0% |
| ! | CTGATTGGTGATTTACTGAT+TGG | - | chr3.4:40698652-40698671 | MS.gene22195:CDS | 35.0% |
| ! | TGAAAAGCTCAAGAAAGTGT+TGG | - | chr3.4:40699632-40699651 | MS.gene22195:intron | 35.0% |
| !! | ATATTTTCAGCCTTTTGGAG+AGG | - | chr3.4:40698539-40698558 | MS.gene22195:CDS | 35.0% |
| !! | GAAAGTGTTGGATATTTACG+AGG | - | chr3.4:40699644-40699663 | MS.gene22195:intron | 35.0% |
| !! | GTTGGTATGTCTTTTTGAGA+AGG | - | chr3.4:40698356-40698375 | MS.gene22195:CDS | 35.0% |
| !! | GTTTTTAGAGGGTAATCAAG+TGG | - | chr3.4:40698777-40698796 | MS.gene22195:intron | 35.0% |
| ACCTGCAGTTTGAGAAAATC+GGG | + | chr3.4:40698435-40698454 | None:intergenic | 40.0% | |
| AGCCTATGGTTCTCCAAAAA+GGG | - | chr3.4:40698332-40698351 | MS.gene22195:CDS | 40.0% | |
| ATATTAGTAGCAGGCCATCT+TGG | - | chr3.4:40699814-40699833 | MS.gene22195:CDS | 40.0% | |
| CACATAAATCAGGATAAGGG+AGG | + | chr3.4:40698758-40698777 | None:intergenic | 40.0% | |
| GACTATAGTAACACGGCTTT+AGG | - | chr3.4:40699189-40699208 | MS.gene22195:intron | 40.0% | |
| GAGGAAATTTGGTTAGAGAG+AGG | - | chr3.4:40699766-40699785 | MS.gene22195:CDS | 40.0% | |
| GATCTTAGCCATCTTGCATT+TGG | - | chr3.4:40699717-40699736 | MS.gene22195:intron | 40.0% | |
| GATGGTGATTATACCCTCTA+TGG | - | chr3.4:40698576-40698595 | MS.gene22195:CDS | 40.0% | |
| GGAAAGACAGTAGAAGAAAG+GGG | - | chr3.4:40699480-40699499 | MS.gene22195:intron | 40.0% | |
| GGCTGAACTTAGAATTACCA+AGG | - | chr3.4:40698892-40698911 | MS.gene22195:intron | 40.0% | |
| GTTCTGTTTGCACCGTTAAA+GGG | - | chr3.4:40699573-40699592 | MS.gene22195:intron | 40.0% | |
| TCAAACTGGGAGAGGAAATT+TGG | - | chr3.4:40699755-40699774 | MS.gene22195:CDS | 40.0% | |
| TCAAGAACCTTCTTCCAAGA+TGG | + | chr3.4:40699831-40699850 | None:intergenic | 40.0% | |
| TGTGCTGTGTAGTTACTGAT+TGG | - | chr3.4:40698637-40698656 | MS.gene22195:CDS | 40.0% | |
| TGTTCTGTTTGCACCGTTAA+AGG | - | chr3.4:40699572-40699591 | MS.gene22195:intron | 40.0% | |
| ! | AGACATACCAACACCCTTTT+TGG | + | chr3.4:40698348-40698367 | None:intergenic | 40.0% |
| ! | GCAGAAAAGTACAAGAACCA+AGG | - | chr3.4:40699444-40699463 | MS.gene22195:intron | 40.0% |
| ! | GCTCTCAAAGACAAAGTACT+TGG | - | chr3.4:40699671-40699690 | MS.gene22195:intron | 40.0% |
| ! | TCAAAGACAAAGTACTTGGC+TGG | - | chr3.4:40699675-40699694 | MS.gene22195:intron | 40.0% |
| ! | TTCCTAACAAATCGGTTCCT+TGG | + | chr3.4:40699464-40699483 | None:intergenic | 40.0% |
| !! | AACCAAGGAACCGATTTGTT+AGG | - | chr3.4:40699459-40699478 | MS.gene22195:intron | 40.0% |
| !! | GGTATGTCTTTTTGAGAAGG+AGG | - | chr3.4:40698359-40698378 | MS.gene22195:CDS | 40.0% |
| AAAGGGGACTTGTGGAACAA+TGG | - | chr3.4:40699496-40699515 | MS.gene22195:intron | 45.0% | |
| AAAGTTTACGGACCAGCCTA+TGG | - | chr3.4:40698318-40698337 | MS.gene22195:CDS | 45.0% | |
| ACAAGAGGAACCTCTCCAAA+AGG | + | chr3.4:40698552-40698571 | None:intergenic | 45.0% | |
| AGAGGAAACATGTGAGTGCA+TGG | - | chr3.4:40699784-40699803 | MS.gene22195:CDS | 45.0% | |
| AGTAGAAGAAAGGGGACTTG+TGG | - | chr3.4:40699488-40699507 | MS.gene22195:intron | 45.0% | |
| ATGACCAAGCTGTAGATTGC+TGG | + | chr3.4:40699549-40699568 | None:intergenic | 45.0% | |
| ATGAGGTGGCTAACCATAGA+GGG | + | chr3.4:40698592-40698611 | None:intergenic | 45.0% | |
| CACTCTCTTCAATCGCTTTC+TGG | + | chr3.4:40699611-40699630 | None:intergenic | 45.0% | |
| CAGCCTATGGTTCTCCAAAA+AGG | - | chr3.4:40698331-40698350 | MS.gene22195:CDS | 45.0% | |
| GAAACATGTGAGTGCATGGT+GGG | - | chr3.4:40699788-40699807 | MS.gene22195:CDS | 45.0% | |
| GAGGTTCCTCTTGTTCAAGA+TGG | - | chr3.4:40698558-40698577 | MS.gene22195:CDS | 45.0% | |
| GGTGGGATGATATTAGTAGC+AGG | - | chr3.4:40699805-40699824 | MS.gene22195:CDS | 45.0% | |
| TGACCAAGCTGTAGATTGCT+GGG | + | chr3.4:40699548-40699567 | None:intergenic | 45.0% | |
| TGTGGAACAATGGCTTGAAG+TGG | - | chr3.4:40699506-40699525 | MS.gene22195:intron | 45.0% | |
| TTATAACCCTCTCGTTCCCA+TGG | + | chr3.4:40698925-40698944 | None:intergenic | 45.0% | |
| TTGGTGAATCAAACTGGGAG+AGG | - | chr3.4:40699747-40699766 | MS.gene22195:CDS | 45.0% | |
| ! | ACCCGATTTTCTCAAACTGC+AGG | - | chr3.4:40698431-40698450 | MS.gene22195:CDS | 45.0% |
| ! | TGGTTCTCCAAAAAGGGTGT+TGG | - | chr3.4:40698338-40698357 | MS.gene22195:CDS | 45.0% |
| ! | TTCAATCGCTTTCTGGTCAC+CGG | + | chr3.4:40699604-40699623 | None:intergenic | 45.0% |
| !! | CACCCTTTTTGGAGAACCAT+AGG | + | chr3.4:40698337-40698356 | None:intergenic | 45.0% |
| !! | CTTTTTGGAGAACCATAGGC+TGG | + | chr3.4:40698333-40698352 | None:intergenic | 45.0% |
| !! | TCACCGGTTTCACCCTTTAA+CGG | + | chr3.4:40699588-40699607 | None:intergenic | 45.0% |
| GATGAGGTGGCTAACCATAG+AGG | + | chr3.4:40698593-40698612 | None:intergenic | 50.0% | |
| GCACCGTTAAAGGGTGAAAC+CGG | - | chr3.4:40699582-40699601 | MS.gene22195:intron | 50.0% | |
| GGAAACATGTGAGTGCATGG+TGG | - | chr3.4:40699787-40699806 | MS.gene22195:CDS | 50.0% | |
| TAGCAGGCCATCTTGGAAGA+AGG | - | chr3.4:40699821-40699840 | MS.gene22195:CDS | 50.0% | |
| TCACCCAGCAATCTACAGCT+TGG | - | chr3.4:40699542-40699561 | MS.gene22195:intron | 50.0% | |
| ! | ATTACCAAGGCCGCTTTCCA+TGG | - | chr3.4:40698905-40698924 | MS.gene22195:intron | 50.0% |
| ! | TTACCAAGGCCGCTTTCCAT+GGG | - | chr3.4:40698906-40698925 | MS.gene22195:intron | 50.0% |
| AGGGAGGCAAAGATGCATGC+AGG | + | chr3.4:40698742-40698761 | None:intergenic | 55.0% | |
| CCTCTCGTTCCCATGGAAAG+CGG | + | chr3.4:40698918-40698937 | None:intergenic | 55.0% | |
| CGCTTTCCATGGGAACGAGA+GGG | - | chr3.4:40698916-40698935 | MS.gene22195:intron | 55.0% | |
| GGGAGGCAAAGATGCATGCA+GGG | + | chr3.4:40698741-40698760 | None:intergenic | 55.0% | |
| CCGCTTTCCATGGGAACGAG+AGG | - | chr3.4:40698915-40698934 | MS.gene22195:intron | 60.0% | |
| GTTCCCATGGAAAGCGGCCT+TGG | + | chr3.4:40698912-40698931 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 40698309 | 40699872 | 40698309 | ID=MS.gene22195 |
| chr3.4 | mRNA | 40698309 | 40699872 | 40698309 | ID=MS.gene22195.t1;Parent=MS.gene22195 |
| chr3.4 | exon | 40699729 | 40699872 | 40699729 | ID=MS.gene22195.t1.exon1;Parent=MS.gene22195.t1 |
| chr3.4 | CDS | 40699729 | 40699872 | 40699729 | ID=cds.MS.gene22195.t1;Parent=MS.gene22195.t1 |
| chr3.4 | exon | 40699584 | 40699632 | 40699584 | ID=MS.gene22195.t1.exon2;Parent=MS.gene22195.t1 |
| chr3.4 | CDS | 40699584 | 40699632 | 40699584 | ID=cds.MS.gene22195.t1;Parent=MS.gene22195.t1 |
| chr3.4 | exon | 40698309 | 40698763 | 40698309 | ID=MS.gene22195.t1.exon3;Parent=MS.gene22195.t1 |
| chr3.4 | CDS | 40698309 | 40698763 | 40698309 | ID=cds.MS.gene22195.t1;Parent=MS.gene22195.t1 |
| Gene Sequence |
| Protein sequence |
