AlfalfaGEDB | MS.gene034931

M. sativa cultivar XinJiangDaYe / MS.gene034931

KEGG: K14847
GO: -
PFAM: PF04427.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene034931.t1	XP_013468062.1	98.8	341	4	0	1	341	1	341	4.30E-185	657.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene034931.t1	Q9LUG5	71.2	313	88	2	28	340	3	313	3.4e-122	439.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene034931.t1	I3SPQ7	98.8	341	4	0	1	341	1	341	3.1e-185	657.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene000625	MS.gene034931	PPI
MS.gene001670	MS.gene034931	PPI
MS.gene003435	MS.gene034931	PPI
MS.gene003846	MS.gene034931	PPI
MS.gene004091	MS.gene034931	PPI
MS.gene005245	MS.gene034931	PPI
MS.gene00612	MS.gene034931	PPI
MS.gene006721	MS.gene034931	PPI
MS.gene006800	MS.gene034931	PPI
MS.gene010453	MS.gene034931	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene034931.t1	MTR_1g061160	98.827	341	4	0	1	341	1	341	0.0	699

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene034931.t1	AT3G23620	71.246	313	88	2	28	340	3	313	4.27e-159	447

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Find 74 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACCTTAGTTGGAGAC+AGG	0.528374	1.3:-44212955	None:intergenic
AAACACCTTAGTTGGAGACA+GGG	0.662381	1.3:-44212954	None:intergenic
AAAGGCTTTGATCCTTCCTT+TGG	0.354826	1.3:-44212709	None:intergenic
AACTGACTGCAGTCTCTTTC+TGG	0.180674	1.3:+44210183	MS.gene034931:CDS
AAGAAAACGTTGTTGCTTCA+TGG	0.355781	1.3:+44210013	MS.gene034931:CDS
AAGAAAATAGCTCCAAAGGA+AGG	0.585681	1.3:+44212697	MS.gene034931:CDS
AAGCCAAGCAGCAGAAACAT+GGG	0.578219	1.3:+44213455	MS.gene034931:CDS
AAGGGACAAGCCAAAGAAAA+AGG	0.337552	1.3:+44213123	MS.gene034931:CDS
AATTGTTTAGATTGGAGAAA+TGG	0.368193	1.3:+44213390	MS.gene034931:intron
ACTCCCATGTTTCTGCTGCT+TGG	0.361871	1.3:-44213458	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTAGGTAAAAACCTTTG+TGG	-	chr1.3:44211655-44211674	None:intergenic	30.0%
AACACAAACAACATGAATCA+TGG	-	chr1.3:44209971-44209990	None:intergenic	30.0%
AGACACTTAAACTTATCTAC+TGG	-	chr1.3:44211966-44211985	None:intergenic	30.0%
AGATCCATACTGCAAAATAT+AGG	-	chr1.3:44212560-44212579	None:intergenic	30.0%
ATAGGAGAAGAATGTCAAAA+AGG	+	chr1.3:44213231-44213250	MS.gene034931:intron	30.0%
ATCGCTTTCCATGTAATATT+TGG	-	chr1.3:44212517-44212536	None:intergenic	30.0%
ATGATTACAAAGAGTCTGTT+TGG	-	chr1.3:44212255-44212274	None:intergenic	30.0%
ATTTCCAATCTTTCCTTGTA+GGG	-	chr1.3:44213260-44213279	None:intergenic	30.0%
CATAAGCTGTTTATTCAAAC+CGG	-	chr1.3:44210693-44210712	None:intergenic	30.0%
CCCACAAAATATATGTCAAT+AGG	+	chr1.3:44212210-44212229	MS.gene034931:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	44209781	44213522	44209781	ID=MS.gene034931
chr1.3	mRNA	44209781	44213522	44209781	ID=MS.gene034931.t1;Parent=MS.gene034931
chr1.3	exon	44209781	44209924	44209781	ID=MS.gene034931.t1.exon1;Parent=MS.gene034931.t1
chr1.3	CDS	44209781	44209924	44209781	ID=cds.MS.gene034931.t1;Parent=MS.gene034931.t1
chr1.3	exon	44210001	44210204	44210001	ID=MS.gene034931.t1.exon2;Parent=MS.gene034931.t1
chr1.3	CDS	44210001	44210204	44210001	ID=cds.MS.gene034931.t1;Parent=MS.gene034931.t1
chr1.3	exon	44212571	44212816	44212571	ID=MS.gene034931.t1.exon3;Parent=MS.gene034931.t1
chr1.3	CDS	44212571	44212816	44212571	ID=cds.MS.gene034931.t1;Parent=MS.gene034931.t1
chr1.3	exon	44212902	44213144	44212902	ID=MS.gene034931.t1.exon4;Parent=MS.gene034931.t1
chr1.3	CDS	44212902	44213144	44212902	ID=cds.MS.gene034931.t1;Parent=MS.gene034931.t1
chr1.3	exon	44213235	44213300	44213235	ID=MS.gene034931.t1.exon5;Parent=MS.gene034931.t1
chr1.3	CDS	44213235	44213300	44213235	ID=cds.MS.gene034931.t1;Parent=MS.gene034931.t1
chr1.3	exon	44213400	44213522	44213400	ID=MS.gene034931.t1.exon6;Parent=MS.gene034931.t1
chr1.3	CDS	44213400	44213522	44213400	ID=cds.MS.gene034931.t1;Parent=MS.gene034931.t1

Gene Sequence

>MS.gene034931

ATGGCCCCTCACACCGCACAGTTTCAGAACCGCCACAATCAAGGTGGAGCACACTCACACAGTAGTTCAACTGCCTTCTCAGAATTCAGAACCGCCACAACCCATAAGGGCAAACTCGCCCTCAAGAAACGTGCTCCAAAACTCGTAACCATCATTACTTCATCTTTTCATTCCATTTAATCAAACACCATGATTCATGTTGTTTGTGTTTTTGTTACAGGTTGAAACTGGGAAGAAAACGTTGTTGCTTCATGGAACCAAAACAAGTGCGGTTTTGAATGCTGTGTTGACTCAGATTTATCATTTGAAGAAGGAAAGTGCGATTAAGTATAGTCGTAAGAATGATAATATTAAACCTTTTGAAGCTGGTGGTGAAACCTCTTTGGAGTTTTTCGCACAAAAAACTGACTGCAGTCTCTTTCTGGTAATTTCTCTCATTTTGTTCTTCAATCGTTGTTGAGTTTGTTTTTAAGGTTTTGGTGGAATTTGTTTTTGTTTTGCTTTGCTTTGTTTTTATGGTTTTATGATTAAGGAATTAGAATTGGTGTTAGTATTGATTTAATTTTAATTTTAATTTGTTCTACCTCTTGTTGTGTAAGTGAATTGCATAGGTACTTGTTTTTATCATTTTGAAGTACATGTTTTAAAAAAGTTAGGAATTTGAAACCAAACTAGGCCCTGTTTGGATTATCAACTTAATAATACGTTTATCAAACAAGTGTTTATGTGTAAAAAAAATCTATAAAATAAGATGAAATAAAGTCAAACCATTTTATATAAGCTATAAGTTGTTTTCATTAGCTATTTTGGCAAGCTTATGAAAACAAGCTGAGAACAGCTTATGGATGTTTCCATAAGCTCTCCTTAGCAGGGTGACGAGTGCTTATTGGTAGTAGATAAGTTTAAGGGCCGGTTTGAATAAACAGCTTATGTGCAGCTTATAGCACAAGCACTTATCATAATAAGCGCTTAGCTTGCCTAAACTATTTTTATAGCTAAAGATAAAATAAAGTTAAATTGTTTATGTAAATGCTATAAGTTGTTTTTATAAGCTACATTGGAGAACTTTGAAAATGAGTTGAAAAAAGGGTATGAAAATTGGCGTTAGTATTAATTAAATTTAAAATTGCATTCTCTCTTGTTGTGCAACATTTTTAGTGAATTACATAGGTTTTTTTTACTTTTTACCATTTTTATGGACTTGTTTTAAAAAAATTAGGAATTTATGGACTTGTTTTAAAAAAGTTAGGAATTTGAACTGTGTTCTTAAGTTATTTATATTTGATGATGTTTGTCATGAAACTGATATAGGCCCTGTTTGGATAAACAACTTAATTAAACGCTCATAGCTTAAACGATTATGATACAAGTGTTTATGTGCAAGTTATTTCTAAAACAAACGAAATAATAATGATAAACCATTTTCATATAAGCTATAAGTTGTTTCCATTAGCTATTTTAGAAAGAACACATTATCATATGAGAGTTTATGTAGAAGTTGTTTCTGTAAGAAGAGAGCAATAAAGTTGATCTTTTTCATATAAGCTGTTTTCACAAGTTATTATGGAGAGCTAATGCACATGTCATAAGCTTTTTCTATAGCTCTCCCAAATAGTCTTATCAGTGCTAATGACAGTAGATAAGCTCAAATAAGTCTATCCAAATAAGCTCTTGGTTGTGATAGTAGATCAGGGGTAACTTAATCTGCCCGAAACTTGTTGTTTTCTATTGCTATTATTCAGACATTTATTTGGTTTGTTTTTTCTTTTACTGAATTTTGTTTGTGTTTAAGATTTTATTATTAAGTCATTACAATTGGTGTTAGCATTGATTTAATTTTAAATTGTATTCTCACTTGTTGTGTAAGTGAACCACAAAGGTTTTTACCTACTTTCACCATTTTTAAGAACCTTTGTTAAAATAAGTTAGGAATTTGAACTTTGTTTTTAAGCTATTTGGTGATGTTTGCCATTAAACCAAATTAGGCCCTATTTGGGTGAACAACTTAATAAAACGTTTATGATTCAAGTGCTTGTGTAAGCTATAAGATAAAATCAAGTCAATCAATTTTATGAGCTATAAGCTGTTTTGGAAAGCTTAAGGAAATAAGCTGAAAACAGCTTCTGAACACGTGATAAACTGTTTCCATAAGCTCTCCCAAGCAGTGTCACAAGTGCTTATGCCAGTAGATAAGTTTAAGTGTCTGTTTGGATAAACAGCTTATATGCAGCTAATAGTACAAGCACTTATCATGATAAGCACTTAGCTTGCATAAGTTATTTTTATAGCAAAAGATAAAAAAAAGTTAGATTGTTTTTGTATATACAATAAAATGTTTTTATAAGCTATGTTGGAGAACTTATGAAAATAAATTGAAAAAAGGAAATGAAAATTGTCATAAGCTGTTTTCATAAATTCTCCTAAACAGTCCCACAAAATATATGTCAATAGGTAAGCTCAAATTAGTCAATCCAAACAGACTCTTTGTAATCATTTCAAACAAGCCCTTAGTTATGATTGCAGTTCAGGGGTAACTTCATCTGTATTCAGATTGTGCTAGTATTACCCGAAACTTGTGATGCTAGGCCTTTTATTTTATTTTTCTCAATTATTGAAAATACGTGTTATAATAGTTAGCAAATCTCAATATAGGCTTGTCCTCCTCTAAATCTAAAAAATAATTGAGCCCCTCTGAAAAATAATTGAGTTCCTTATTCATACATAGTAAGAGCTCCAAATATTACATGGAAAGCGATTTTGTTTTGATTTAATGTTGCCTATATTTTGCAGTATGGATCTCACTCAAAGAAGAGACCTAATAACCTTGTTCTCGGGAGAATGTATGATTTCCATGTCTATGATCTGATAGAAGTTGGTATTGAAAATTTTAGAGGCATGGAGTCATTTGATTATGATAAGAAAATAGCTCCAAAGGAAGGATCAAAGCCTTTTATGGCTTTCATTGGGGAAGGATTTGAGTCTGTGAACGAACTTAAACAGCTGAAGGAAGTTTTACTTGATCTTTTTCGCGGAGAGGTGCGTCTTTGTTTTTTCTTTCTCTTTCACATTCTTTTGTTGGCAGCTGGACTGTGTTAACAGAAGTGATGCATATGATTCACAGGTTGTGGAGAATTTAAATCTTGCCGGAGTGGACCGTGCATATGTATGTACTGCCCTGTCTCCAACTAAGGTGTTTTTCACACACTGTGCATTGCGGTTGAAAAAATCTGGCACAGTTGTCCCAAGAATGGAATTGGTAGAAGTTGGTCCTTCCATGGATATGGTTATTCGCCGGCATCGTCCTCCTAATGAAAGTGTGATGAAGGAAGCCATGAAAACTTCAAGGGACAAGCCAAAGAAAAAGGTAAACCAATTCTCTAAATCTTTCAAGTTTATCTGTTAATGTAAAATGAAGTTGCATGTCTAAATCGTGTACTTGTTCTGTTTCTAATAGGAGAAGAATGTCAAAAAGGATCCCCTACAAGGAAAGATTGGAAATGTTTATATTCCAGATCAGAAGGTAAGAGGGACTATTCTTGTTCTTTGCTTTAACTATTTTAGTTAGTTCATTCAACTTAGTACATTGAATTTGCTTATGATATCGATTTTAATTGTTTAGATTGGAGAAATGGTTTTGCCTAATAAATCGAAAGGAGTGAAGAGGGAGCGCCGAGAAGCCAAGCAGCAGAAACATGGGAGTGATGAGCATGCATCGAAAAAGCAGAAGGATGAATCTTCCTAA

Protein sequence

>MS.gene034931.t1

MAPHTAQFQNRHNQGGAHSHSSSTAFSEFRTATTHKGKLALKKRAPKLVETGKKTLLLHGTKTSAVLNAVLTQIYHLKKESAIKYSRKNDNIKPFEAGGETSLEFFAQKTDCSLFLYGSHSKKRPNNLVLGRMYDFHVYDLIEVGIENFRGMESFDYDKKIAPKEGSKPFMAFIGEGFESVNELKQLKEVLLDLFRGEVVENLNLAGVDRAYVCTALSPTKVFFTHCALRLKKSGTVVPRMELVEVGPSMDMVIRRHRPPNESVMKEAMKTSRDKPKKKEKNVKKDPLQGKIGNVYIPDQKIGEMVLPNKSKGVKRERREAKQQKHGSDEHASKKQKDESS