Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034931.t1 | XP_013468062.1 | 98.8 | 341 | 4 | 0 | 1 | 341 | 1 | 341 | 4.30E-185 | 657.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034931.t1 | Q9LUG5 | 71.2 | 313 | 88 | 2 | 28 | 340 | 3 | 313 | 3.4e-122 | 439.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034931.t1 | I3SPQ7 | 98.8 | 341 | 4 | 0 | 1 | 341 | 1 | 341 | 3.1e-185 | 657.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034931.t1 | MTR_1g061160 | 98.827 | 341 | 4 | 0 | 1 | 341 | 1 | 341 | 0.0 | 699 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034931.t1 | AT3G23620 | 71.246 | 313 | 88 | 2 | 28 | 340 | 3 | 313 | 4.27e-159 | 447 |
Find 74 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTGACTGCAGTCTCTTTC+TGG | 0.180674 | 1.3:+44210183 | MS.gene034931:CDS |
| TGAGGGCGAGTTTGCCCTTA+TGG | 0.218905 | 1.3:-44209882 | None:intergenic |
| GTAATGATGGTTACGAGTTT+TGG | 0.263003 | 1.3:-44209916 | None:intergenic |
| ACTTCTACCAATTCCATTCT+TGG | 0.274683 | 1.3:-44213022 | None:intergenic |
| GTTTCTGCTGCTTGGCTTCT+CGG | 0.282208 | 1.3:-44213450 | None:intergenic |
| ATTCAAAACCGCACTTGTTT+TGG | 0.289863 | 1.3:-44210038 | None:intergenic |
| CATTTCCAATCTTTCCTTGT+AGG | 0.311357 | 1.3:-44213258 | None:intergenic |
| AGTTGGTCCTTCCATGGATA+TGG | 0.326164 | 1.3:+44213042 | MS.gene034931:CDS |
| TCCCCAATGAAAGCCATAAA+AGG | 0.334452 | 1.3:-44212727 | None:intergenic |
| AGCTGGTGGTGAAACCTCTT+TGG | 0.334516 | 1.3:+44210144 | MS.gene034931:CDS |
| GAGGGCGAGTTTGCCCTTAT+GGG | 0.337355 | 1.3:-44209881 | None:intergenic |
| AAGGGACAAGCCAAAGAAAA+AGG | 0.337552 | 1.3:+44213123 | MS.gene034931:CDS |
| AAAGGCTTTGATCCTTCCTT+TGG | 0.354826 | 1.3:-44212709 | None:intergenic |
| AAGAAAACGTTGTTGCTTCA+TGG | 0.355781 | 1.3:+44210013 | MS.gene034931:CDS |
| GTGGAGAATTTAAATCTTGC+CGG | 0.361028 | 1.3:+44212905 | MS.gene034931:CDS |
| ACTCCCATGTTTCTGCTGCT+TGG | 0.361871 | 1.3:-44213458 | None:intergenic |
| CTCCCGAGAACAAGGTTATT+AGG | 0.367924 | 1.3:-44212595 | None:intergenic |
| AATTGTTTAGATTGGAGAAA+TGG | 0.368193 | 1.3:+44213390 | MS.gene034931:intron |
| TTCACTCCTTTCGATTTATT+AGG | 0.370859 | 1.3:-44213418 | None:intergenic |
| ATAGGAGAAGAATGTCAAAA+AGG | 0.389857 | 1.3:+44213231 | MS.gene034931:intron |
| TCCTTCATCACACTTTCATT+AGG | 0.397326 | 1.3:-44213085 | None:intergenic |
| CTTCTACCAATTCCATTCTT+GGG | 0.402072 | 1.3:-44213021 | None:intergenic |
| GTCCCTCTTACCTTCTGATC+TGG | 0.404383 | 1.3:-44213289 | None:intergenic |
| ATTTCCAATCTTTCCTTGTA+GGG | 0.414052 | 1.3:-44213257 | None:intergenic |
| TACTGCCCTGTCTCCAACTA+AGG | 0.416338 | 1.3:+44212949 | MS.gene034931:CDS |
| GATCCCCTACAAGGAAAGAT+TGG | 0.422525 | 1.3:+44213253 | MS.gene034931:CDS |
| AGTTGTCCCAAGAATGGAAT+TGG | 0.444927 | 1.3:+44213015 | MS.gene034931:CDS |
| AGACCTAATAACCTTGTTCT+CGG | 0.458179 | 1.3:+44212592 | MS.gene034931:CDS |
| CAGAACCGCCACAACCCATA+AGG | 0.468050 | 1.3:+44209867 | MS.gene034931:CDS |
| TCAGATTTATCATTTGAAGA+AGG | 0.468460 | 1.3:+44210072 | MS.gene034931:CDS |
| TCTGAAACTGTGCGGTGTGA+GGG | 0.475218 | 1.3:-44209786 | None:intergenic |
| GAGTTTGCCCTTATGGGTTG+TGG | 0.476342 | 1.3:-44209875 | None:intergenic |
| TGGCACAGTTGTCCCAAGAA+TGG | 0.482338 | 1.3:+44213009 | MS.gene034931:CDS |
| TTCATCACACTTTCATTAGG+AGG | 0.486397 | 1.3:-44213082 | None:intergenic |
| TTTATGGCTTTCATTGGGGA+AGG | 0.487396 | 1.3:+44212730 | MS.gene034931:CDS |
| TCCTAATGAAAGTGTGATGA+AGG | 0.493736 | 1.3:+44213084 | MS.gene034931:CDS |
| GAAGCCAAGCAGCAGAAACA+TGG | 0.494056 | 1.3:+44213454 | MS.gene034931:CDS |
| GTTTCACCACCAGCTTCAAA+AGG | 0.496777 | 1.3:-44210136 | None:intergenic |
| TTCTGAAACTGTGCGGTGTG+AGG | 0.506916 | 1.3:-44209787 | None:intergenic |
| GTCTATGATCTGATAGAAGT+TGG | 0.514759 | 1.3:+44212634 | MS.gene034931:CDS |
| ATAAATCGAAAGGAGTGAAG+AGG | 0.524729 | 1.3:+44213422 | MS.gene034931:CDS |
| CATACATTCTCCCGAGAACA+AGG | 0.525815 | 1.3:-44212603 | None:intergenic |
| GACCTAATAACCTTGTTCTC+GGG | 0.526089 | 1.3:+44212593 | MS.gene034931:CDS |
| AAAACACCTTAGTTGGAGAC+AGG | 0.528374 | 1.3:-44212955 | None:intergenic |
| GGTAGAAGTTGGTCCTTCCA+TGG | 0.530363 | 1.3:+44213036 | MS.gene034931:CDS |
| AGAACCGCCACAACCCATAA+GGG | 0.532404 | 1.3:+44209868 | MS.gene034931:CDS |
| AGAATGGAATTGGTAGAAGT+TGG | 0.538211 | 1.3:+44213025 | MS.gene034931:CDS |
| TTTCAGAACCGCCACAATCA+AGG | 0.545213 | 1.3:+44209802 | MS.gene034931:CDS |
| TTTCATTAGGAGGACGATGC+CGG | 0.551349 | 1.3:-44213072 | None:intergenic |
| GAATTTAAATCTTGCCGGAG+TGG | 0.559897 | 1.3:+44212910 | MS.gene034931:CDS |
| TTTCCAATCTTTCCTTGTAG+GGG | 0.560156 | 1.3:-44213256 | None:intergenic |
| CCGGCGAATAACCATATCCA+TGG | 0.560635 | 1.3:-44213053 | None:intergenic |
| TGATAAGAAAATAGCTCCAA+AGG | 0.560881 | 1.3:+44212693 | MS.gene034931:CDS |
| AGGAAGCCATGAAAACTTCA+AGG | 0.562762 | 1.3:+44213104 | MS.gene034931:CDS |
| CCATGGATATGGTTATTCGC+CGG | 0.570411 | 1.3:+44213053 | MS.gene034931:CDS |
| TGTTTATATTCCAGATCAGA+AGG | 0.574269 | 1.3:+44213279 | MS.gene034931:CDS |
| AAGCCAAGCAGCAGAAACAT+GGG | 0.578219 | 1.3:+44213455 | MS.gene034931:CDS |
| AAGAAAATAGCTCCAAAGGA+AGG | 0.585681 | 1.3:+44212697 | MS.gene034931:CDS |
| TAAATCGAAAGGAGTGAAGA+GGG | 0.586006 | 1.3:+44213423 | MS.gene034931:CDS |
| GAACGAACTTAAACAGCTGA+AGG | 0.586198 | 1.3:+44212765 | MS.gene034931:CDS |
| CTGAAACTGTGCGGTGTGAG+GGG | 0.595983 | 1.3:-44209785 | None:intergenic |
| TACATATGCACGGTCCACTC+CGG | 0.600615 | 1.3:-44212924 | None:intergenic |
| GGCGGTTCTGAATTCTGAGA+AGG | 0.604864 | 1.3:-44209854 | None:intergenic |
| CTTCTATCAGATCATAGACA+TGG | 0.608305 | 1.3:-44212630 | None:intergenic |
| CGAATAACCATATCCATGGA+AGG | 0.616987 | 1.3:-44213049 | None:intergenic |
| GGAAGCCATGAAAACTTCAA+GGG | 0.623284 | 1.3:+44213105 | MS.gene034931:CDS |
| TTTGCCCTTATGGGTTGTGG+CGG | 0.625672 | 1.3:-44209872 | None:intergenic |
| GTGCTCCACCTTGATTGTGG+CGG | 0.643443 | 1.3:-44209810 | None:intergenic |
| AAACACCTTAGTTGGAGACA+GGG | 0.662381 | 1.3:-44212954 | None:intergenic |
| TCATGGAACCAAAACAAGTG+CGG | 0.674518 | 1.3:+44210030 | MS.gene034931:CDS |
| AGTGTGCTCCACCTTGATTG+TGG | 0.679241 | 1.3:-44209813 | None:intergenic |
| GGGCAGTACATACATATGCA+CGG | 0.685032 | 1.3:-44212934 | None:intergenic |
| CAGAACCGCCACAATCAAGG+TGG | 0.698305 | 1.3:+44209805 | MS.gene034931:CDS |
| GTGGCGGTTCTGAAACTGTG+CGG | 0.750122 | 1.3:-44209794 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGAGAAAAATAAAATAAA+AGG | - | chr1.3:44212370-44212389 | None:intergenic | 10.0% |
| !! | TATGAAAATAAATTGAAAAA+AGG | + | chr1.3:44212141-44212160 | MS.gene034931:intron | 10.0% |
| !! | TTAAAAAAATTAGGAATTTA+TGG | + | chr1.3:44210987-44211006 | MS.gene034931:intron | 10.0% |
| !! | AACTTATAGCTTATATAAAA+TGG | - | chr1.3:44210551-44210570 | None:intergenic | 15.0% |
| !! | TATTATTAAGTCATTACAAT+TGG | + | chr1.3:44211577-44211596 | MS.gene034931:intron | 15.0% |
| !! | TTTAGCTATAAAAATAGTTT+AGG | - | chr1.3:44210761-44210780 | None:intergenic | 15.0% |
| !!! | CAATTATTTTTTAGATTTAG+AGG | - | chr1.3:44212445-44212464 | None:intergenic | 15.0% |
| !!! | TTTACTTTTTACCATTTTTA+TGG | + | chr1.3:44210957-44210976 | MS.gene034931:intron | 15.0% |
| !!! | TTTTTATGGTTTTATGATTA+AGG | + | chr1.3:44210291-44210310 | MS.gene034931:intron | 15.0% |
| !! | AACCTTTGTTAAAATAAGTT+AGG | + | chr1.3:44211688-44211707 | MS.gene034931:intron | 20.0% |
| !! | ACTTATAGCTTATATGAAAA+TGG | - | chr1.3:44211202-44211221 | None:intergenic | 20.0% |
| !! | CTATTATTCAGACATTTATT+TGG | + | chr1.3:44211512-44211531 | MS.gene034931:intron | 20.0% |
| !! | TATGATTAAGGAATTAGAAT+TGG | + | chr1.3:44210303-44210322 | MS.gene034931:intron | 20.0% |
| !! | TTAAAACAAGTCCATAAAAA+TGG | - | chr1.3:44210971-44210990 | None:intergenic | 20.0% |
| !! | TTAACAAAGGTTCTTAAAAA+TGG | - | chr1.3:44211680-44211699 | None:intergenic | 20.0% |
| !!! | AACTTTGTTTTTAAGCTATT+TGG | + | chr1.3:44211717-44211736 | MS.gene034931:intron | 20.0% |
| !!! | AATGTTTTTATAAGCTATGT+TGG | + | chr1.3:44212112-44212131 | MS.gene034931:intron | 20.0% |
| !!! | ACATTTTTAGTGAATTACAT+AGG | + | chr1.3:44210929-44210948 | MS.gene034931:intron | 20.0% |
| !!! | GGACTTGTTTTAAAAAAATT+AGG | + | chr1.3:44210978-44210997 | MS.gene034931:intron | 20.0% |
| !!! | GTACATGTTTTAAAAAAGTT+AGG | + | chr1.3:44210415-44210434 | MS.gene034931:intron | 20.0% |
| !!! | TCGATTTTAATTGTTTAGAT+TGG | + | chr1.3:44213382-44213401 | MS.gene034931:intron | 20.0% |
| !!! | TTATTTTTTAGATTTAGAGG+AGG | - | chr1.3:44212442-44212461 | None:intergenic | 20.0% |
| !!! | TTCCTAACTTATTTTAACAA+AGG | - | chr1.3:44211693-44211712 | None:intergenic | 20.0% |
| !!! | TTGAAAATGAGTTGAAAAAA+GGG | + | chr1.3:44210848-44210867 | MS.gene034931:intron | 20.0% |
| !!! | TTTGAAAATGAGTTGAAAAA+AGG | + | chr1.3:44210847-44210866 | MS.gene034931:intron | 20.0% |
| ! | AATAGAAAACAACAAGTTTC+GGG | - | chr1.3:44211491-44211510 | None:intergenic | 25.0% |
| ! | AATCATGGTGTTTGATTAAA+TGG | - | chr1.3:44209956-44209975 | None:intergenic | 25.0% |
| ! | AATTGTTTAGATTGGAGAAA+TGG | + | chr1.3:44213390-44213409 | MS.gene034931:intron | 25.0% |
| ! | ACTTGAAAGATTTAGAGAAT+TGG | - | chr1.3:44213153-44213172 | None:intergenic | 25.0% |
| ! | ATGAAAAGATGAAGTAATGA+TGG | - | chr1.3:44209932-44209951 | None:intergenic | 25.0% |
| ! | CAATAGAAAACAACAAGTTT+CGG | - | chr1.3:44211492-44211511 | None:intergenic | 25.0% |
| ! | TAGTTAGCAAATCTCAATAT+AGG | + | chr1.3:44212411-44212430 | MS.gene034931:intron | 25.0% |
| ! | TCAGATTTATCATTTGAAGA+AGG | + | chr1.3:44210072-44210091 | MS.gene034931:CDS | 25.0% |
| ! | TTCTTAAAAATGGTGAAAGT+AGG | - | chr1.3:44211670-44211689 | None:intergenic | 25.0% |
| !! | ACCTATTGACATATATTTTG+TGG | - | chr1.3:44212214-44212233 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+AGG | - | chr1.3:44211097-44211116 | None:intergenic | 25.0% |
| !! | ATTGGTAGTAGATAAGTTTA+AGG | + | chr1.3:44210666-44210685 | MS.gene034931:intron | 25.0% |
| !! | CCTATTGACATATATTTTGT+GGG | - | chr1.3:44212213-44212232 | None:intergenic | 25.0% |
| !! | TGAAAAAAGGGTATGAAAAT+TGG | + | chr1.3:44210860-44210879 | MS.gene034931:intron | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+GGG | - | chr1.3:44211096-44211115 | None:intergenic | 25.0% |
| !! | TTGGTAGTAGATAAGTTTAA+GGG | + | chr1.3:44210667-44210686 | MS.gene034931:intron | 25.0% |
| !!! | AACTCAATTATTTTTCAGAG+GGG | - | chr1.3:44212470-44212489 | None:intergenic | 25.0% |
| !!! | AATATTAAACCTTTTGAAGC+TGG | + | chr1.3:44210127-44210146 | MS.gene034931:CDS | 25.0% |
| !!! | AATTGGTTTACCTTTTTCTT+TGG | - | chr1.3:44213136-44213155 | None:intergenic | 25.0% |
| !!! | ATTAAGTTGATAATCCAAAC+AGG | - | chr1.3:44210461-44210480 | None:intergenic | 25.0% |
| !!! | GAACTCAATTATTTTTCAGA+GGG | - | chr1.3:44212471-44212490 | None:intergenic | 25.0% |
| !!! | GGACTTGTTTTAAAAAAGTT+AGG | + | chr1.3:44211008-44211027 | MS.gene034931:intron | 25.0% |
| !!! | GTTCTTTCTAAAATAGCTAA+TGG | - | chr1.3:44211230-44211249 | None:intergenic | 25.0% |
| !!! | GTTGGTATTGAAAATTTTAG+AGG | + | chr1.3:44212652-44212671 | MS.gene034931:CDS | 25.0% |
| !!! | GTTGTTTTCATTAGCTATTT+TGG | + | chr1.3:44210568-44210587 | MS.gene034931:intron | 25.0% |
| !!! | GTTGTTTTTATAAGCTACAT+TGG | + | chr1.3:44210819-44210838 | MS.gene034931:intron | 25.0% |
| !!! | TATTGAAAATTTTAGAGGCA+TGG | + | chr1.3:44212657-44212676 | MS.gene034931:CDS | 25.0% |
| !!! | TGAGTTTGTTTTTAAGGTTT+TGG | + | chr1.3:44210238-44210257 | MS.gene034931:intron | 25.0% |
| !!! | TTAAGTTGATAATCCAAACA+GGG | - | chr1.3:44210460-44210479 | None:intergenic | 25.0% |
| !!! | TTTGCTTTGCTTTGTTTTTA+TGG | + | chr1.3:44210277-44210296 | MS.gene034931:intron | 25.0% |
| AAAGTAGGTAAAAACCTTTG+TGG | - | chr1.3:44211655-44211674 | None:intergenic | 30.0% | |
| AACACAAACAACATGAATCA+TGG | - | chr1.3:44209971-44209990 | None:intergenic | 30.0% | |
| AGACACTTAAACTTATCTAC+TGG | - | chr1.3:44211966-44211985 | None:intergenic | 30.0% | |
| AGATCCATACTGCAAAATAT+AGG | - | chr1.3:44212560-44212579 | None:intergenic | 30.0% | |
| ATAGGAGAAGAATGTCAAAA+AGG | + | chr1.3:44213231-44213250 | MS.gene034931:intron | 30.0% | |
| ATCGCTTTCCATGTAATATT+TGG | - | chr1.3:44212517-44212536 | None:intergenic | 30.0% | |
| ATGATTACAAAGAGTCTGTT+TGG | - | chr1.3:44212255-44212274 | None:intergenic | 30.0% | |
| ATTTCCAATCTTTCCTTGTA+GGG | - | chr1.3:44213260-44213279 | None:intergenic | 30.0% | |
| CATAAGCTGTTTATTCAAAC+CGG | - | chr1.3:44210693-44210712 | None:intergenic | 30.0% | |
| CCCACAAAATATATGTCAAT+AGG | + | chr1.3:44212210-44212229 | MS.gene034931:intron | 30.0% | |
| GATAAGTTTAAGTGTCTGTT+TGG | + | chr1.3:44211969-44211988 | MS.gene034931:intron | 30.0% | |
| GCTCTTACTATGTATGAATA+AGG | - | chr1.3:44212493-44212512 | None:intergenic | 30.0% | |
| GTTTGCCATTAAACCAAATT+AGG | + | chr1.3:44211744-44211763 | MS.gene034931:intron | 30.0% | |
| GTTTGTCATGAAACTGATAT+AGG | + | chr1.3:44211070-44211089 | MS.gene034931:intron | 30.0% | |
| TAAGAGCTCCAAATATTACA+TGG | + | chr1.3:44212506-44212525 | MS.gene034931:intron | 30.0% | |
| TGAACTGCAATCATAACTAA+GGG | - | chr1.3:44212288-44212307 | None:intergenic | 30.0% | |
| TGATAAGAAAATAGCTCCAA+AGG | + | chr1.3:44212693-44212712 | MS.gene034931:CDS | 30.0% | |
| TGTTTATATTCCAGATCAGA+AGG | + | chr1.3:44213279-44213298 | MS.gene034931:CDS | 30.0% | |
| TTAGTTATGATTGCAGTTCA+GGG | + | chr1.3:44212288-44212307 | MS.gene034931:intron | 30.0% | |
| TTCACTCCTTTCGATTTATT+AGG | - | chr1.3:44213421-44213440 | None:intergenic | 30.0% | |
| ! | ATTAAGTTGTTCACCCAAAT+AGG | - | chr1.3:44211771-44211790 | None:intergenic | 30.0% |
| ! | GTTTTGCCTAATAAATCGAA+AGG | + | chr1.3:44213412-44213431 | MS.gene034931:CDS | 30.0% |
| ! | TAGGAATTTGAAACCAAACT+AGG | + | chr1.3:44210434-44210453 | MS.gene034931:intron | 30.0% |
| ! | TATATTTTGTGGGACTGTTT+AGG | - | chr1.3:44212203-44212222 | None:intergenic | 30.0% |
| ! | TCTCTTTCACATTCTTTTGT+TGG | + | chr1.3:44212837-44212856 | MS.gene034931:intron | 30.0% |
| ! | TTAAGTTGTTCACCCAAATA+GGG | - | chr1.3:44211770-44211789 | None:intergenic | 30.0% |
| ! | TTATGAGCTATAAGCTGTTT+TGG | + | chr1.3:44211850-44211869 | MS.gene034931:intron | 30.0% |
| !! | GCTGTTTTCACAAGTTATTA+TGG | + | chr1.3:44211325-44211344 | MS.gene034931:intron | 30.0% |
| !! | GGAACTCAATTATTTTTCAG+AGG | - | chr1.3:44212472-44212491 | None:intergenic | 30.0% |
| !! | GTACTTGTTCTGTTTCTAAT+AGG | + | chr1.3:44213213-44213232 | MS.gene034931:intron | 30.0% |
| !! | GTTGTTTGTGTTTTTGTTAC+AGG | + | chr1.3:44209979-44209998 | MS.gene034931:intron | 30.0% |
| !! | GTTTTACTTGATCTTTTTCG+CGG | + | chr1.3:44212790-44212809 | MS.gene034931:CDS | 30.0% |
| !! | TAGCACTGATAAGACTATTT+GGG | - | chr1.3:44211390-44211409 | None:intergenic | 30.0% |
| !! | TTAGCACTGATAAGACTATT+TGG | - | chr1.3:44211391-44211410 | None:intergenic | 30.0% |
| !! | TTTTGTTACAGGTTGAAACT+GGG | + | chr1.3:44209990-44210009 | MS.gene034931:intron | 30.0% |
| !! | TTTTTGTTACAGGTTGAAAC+TGG | + | chr1.3:44209989-44210008 | MS.gene034931:intron | 30.0% |
| !!! | CGTTGTTGAGTTTGTTTTTA+AGG | + | chr1.3:44210232-44210251 | MS.gene034931:intron | 30.0% |
| !!! | GTTTGTTTTTAAGGTTTTGG+TGG | + | chr1.3:44210241-44210260 | MS.gene034931:intron | 30.0% |
| AAACCAAATTAGGCCCTATT+TGG | + | chr1.3:44211754-44211773 | MS.gene034931:intron | 35.0% | |
| AACCAAATTAGGCCCTATTT+GGG | + | chr1.3:44211755-44211774 | MS.gene034931:intron | 35.0% | |
| AAGAAAATAGCTCCAAAGGA+AGG | + | chr1.3:44212697-44212716 | MS.gene034931:CDS | 35.0% | |
| AAGTGATGCATATGATTCAC+AGG | + | chr1.3:44212880-44212899 | MS.gene034931:intron | 35.0% | |
| ACTTCTACCAATTCCATTCT+TGG | - | chr1.3:44213025-44213044 | None:intergenic | 35.0% | |
| AGAATGGAATTGGTAGAAGT+TGG | + | chr1.3:44213025-44213044 | MS.gene034931:CDS | 35.0% | |
| AGACCTAATAACCTTGTTCT+CGG | + | chr1.3:44212592-44212611 | MS.gene034931:CDS | 35.0% | |
| AGTCTATCCAAATAAGCTCT+TGG | + | chr1.3:44211433-44211452 | MS.gene034931:intron | 35.0% | |
| ATAAATCGAAAGGAGTGAAG+AGG | + | chr1.3:44213422-44213441 | MS.gene034931:CDS | 35.0% | |
| ATCACAACCAAGAGCTTATT+TGG | - | chr1.3:44211443-44211462 | None:intergenic | 35.0% | |
| CAATTCACTTACACAACAAG+AGG | - | chr1.3:44210367-44210386 | None:intergenic | 35.0% | |
| CATTTCCAATCTTTCCTTGT+AGG | - | chr1.3:44213261-44213280 | None:intergenic | 35.0% | |
| CTGAACTGCAATCATAACTA+AGG | - | chr1.3:44212289-44212308 | None:intergenic | 35.0% | |
| CTTAGTTATGATTGCAGTTC+AGG | + | chr1.3:44212287-44212306 | MS.gene034931:intron | 35.0% | |
| CTTCTACCAATTCCATTCTT+GGG | - | chr1.3:44213024-44213043 | None:intergenic | 35.0% | |
| CTTCTATCAGATCATAGACA+TGG | - | chr1.3:44212633-44212652 | None:intergenic | 35.0% | |
| GTCTATGATCTGATAGAAGT+TGG | + | chr1.3:44212634-44212653 | MS.gene034931:CDS | 35.0% | |
| GTGGAGAATTTAAATCTTGC+CGG | + | chr1.3:44212905-44212924 | MS.gene034931:CDS | 35.0% | |
| GTTGTGTAAGTGAATTGCAT+AGG | + | chr1.3:44210370-44210389 | MS.gene034931:intron | 35.0% | |
| TAAATCGAAAGGAGTGAAGA+GGG | + | chr1.3:44213423-44213442 | MS.gene034931:CDS | 35.0% | |
| TAGTAGATAAGTTTAAGGGC+CGG | + | chr1.3:44210671-44210690 | MS.gene034931:intron | 35.0% | |
| TAGTTATGATTGCAGTTCAG+GGG | + | chr1.3:44212289-44212308 | MS.gene034931:intron | 35.0% | |
| TCCTTCATCACACTTTCATT+AGG | - | chr1.3:44213088-44213107 | None:intergenic | 35.0% | |
| TGTGTGAAAAACACCTTAGT+TGG | - | chr1.3:44212965-44212984 | None:intergenic | 35.0% | |
| TTCATCACACTTTCATTAGG+AGG | - | chr1.3:44213085-44213104 | None:intergenic | 35.0% | |
| TTGGTTGTGATAGTAGATCA+GGG | + | chr1.3:44211452-44211471 | MS.gene034931:intron | 35.0% | |
| TTTCCAATCTTTCCTTGTAG+GGG | - | chr1.3:44213259-44213278 | None:intergenic | 35.0% | |
| ! | AAGAAAACGTTGTTGCTTCA+TGG | + | chr1.3:44210013-44210032 | MS.gene034931:CDS | 35.0% |
| ! | AAGCCTTTTATGGCTTTCAT+TGG | + | chr1.3:44212724-44212743 | MS.gene034931:CDS | 35.0% |
| ! | AGCCTTTTATGGCTTTCATT+GGG | + | chr1.3:44212725-44212744 | MS.gene034931:CDS | 35.0% |
| ! | ATTCAAAACCGCACTTGTTT+TGG | - | chr1.3:44210041-44210060 | None:intergenic | 35.0% |
| ! | GTAATGATGGTTACGAGTTT+TGG | - | chr1.3:44209919-44209938 | None:intergenic | 35.0% |
| ! | GTTGCCTATATTTTGCAGTA+TGG | + | chr1.3:44212553-44212572 | MS.gene034931:intron | 35.0% |
| ! | TAGGGCCTAATTTGGTTTAA+TGG | - | chr1.3:44211752-44211771 | None:intergenic | 35.0% |
| ! | TCCTAATGAAAGTGTGATGA+AGG | + | chr1.3:44213084-44213103 | MS.gene034931:CDS | 35.0% |
| !!! | AAGCTGTTTTGGAAAGCTTA+AGG | + | chr1.3:44211861-44211880 | MS.gene034931:intron | 35.0% |
| !!! | ATTAAACCTTTTGAAGCTGG+TGG | + | chr1.3:44210130-44210149 | MS.gene034931:CDS | 35.0% |
| AAAACACCTTAGTTGGAGAC+AGG | - | chr1.3:44212958-44212977 | None:intergenic | 40.0% | |
| AAACACCTTAGTTGGAGACA+GGG | - | chr1.3:44212957-44212976 | None:intergenic | 40.0% | |
| AAACTGATATAGGCCCTGTT+TGG | + | chr1.3:44211080-44211099 | MS.gene034931:intron | 40.0% | |
| AACAAGCTGAGAACAGCTTA+TGG | + | chr1.3:44210603-44210622 | MS.gene034931:intron | 40.0% | |
| AAGGGACAAGCCAAAGAAAA+AGG | + | chr1.3:44213123-44213142 | MS.gene034931:CDS | 40.0% | |
| AGGAAGCCATGAAAACTTCA+AGG | + | chr1.3:44213104-44213123 | MS.gene034931:CDS | 40.0% | |
| AGTTGTCCCAAGAATGGAAT+TGG | + | chr1.3:44213015-44213034 | MS.gene034931:CDS | 40.0% | |
| ATTCCAGATCAGAAGGTAAG+AGG | + | chr1.3:44213286-44213305 | MS.gene034931:intron | 40.0% | |
| CGAATAACCATATCCATGGA+AGG | - | chr1.3:44213052-44213071 | None:intergenic | 40.0% | |
| CTTGGTTGTGATAGTAGATC+AGG | + | chr1.3:44211451-44211470 | MS.gene034931:intron | 40.0% | |
| GAACGAACTTAAACAGCTGA+AGG | + | chr1.3:44212765-44212784 | MS.gene034931:CDS | 40.0% | |
| GAATTTAAATCTTGCCGGAG+TGG | + | chr1.3:44212910-44212929 | MS.gene034931:CDS | 40.0% | |
| GACCTAATAACCTTGTTCTC+GGG | + | chr1.3:44212593-44212612 | MS.gene034931:CDS | 40.0% | |
| GCATTGCGGTTGAAAAAATC+TGG | + | chr1.3:44212989-44213008 | MS.gene034931:CDS | 40.0% | |
| GGAAGCCATGAAAACTTCAA+GGG | + | chr1.3:44213105-44213124 | MS.gene034931:CDS | 40.0% | |
| GTTGTGTAAGTGAACCACAA+AGG | + | chr1.3:44211638-44211657 | MS.gene034931:intron | 40.0% | |
| TCATGGAACCAAAACAAGTG+CGG | + | chr1.3:44210030-44210049 | MS.gene034931:CDS | 40.0% | |
| TCCCCAATGAAAGCCATAAA+AGG | - | chr1.3:44212730-44212749 | None:intergenic | 40.0% | |
| TGCATATGATTCACAGGTTG+TGG | + | chr1.3:44212886-44212905 | MS.gene034931:intron | 40.0% | |
| TGGTTGTGATAGTAGATCAG+GGG | + | chr1.3:44211453-44211472 | MS.gene034931:intron | 40.0% | |
| TTCCAGATCAGAAGGTAAGA+GGG | + | chr1.3:44213287-44213306 | MS.gene034931:intron | 40.0% | |
| TTGTGCGAAAAACTCCAAAG+AGG | - | chr1.3:44210161-44210180 | None:intergenic | 40.0% | |
| TTTATGGCTTTCATTGGGGA+AGG | + | chr1.3:44212730-44212749 | MS.gene034931:CDS | 40.0% | |
| ! | AAAGGCTTTGATCCTTCCTT+TGG | - | chr1.3:44212712-44212731 | None:intergenic | 40.0% |
| ! | CTTGTCCCTTGAAGTTTTCA+TGG | - | chr1.3:44213113-44213132 | None:intergenic | 40.0% |
| ! | GCCTTTTATGGCTTTCATTG+GGG | + | chr1.3:44212726-44212745 | MS.gene034931:CDS | 40.0% |
| ! | GGAAGGATCAAAGCCTTTTA+TGG | + | chr1.3:44212714-44212733 | MS.gene034931:CDS | 40.0% |
| ! | TTTTCACACACTGTGCATTG+CGG | + | chr1.3:44212975-44212994 | MS.gene034931:CDS | 40.0% |
| !!! | TTTTGGAGCACGTTTCTTGA+GGG | - | chr1.3:44209902-44209921 | None:intergenic | 40.0% |
| AAACCAAACTAGGCCCTGTT+TGG | + | chr1.3:44210444-44210463 | MS.gene034931:intron | 45.0% | |
| AACTGACTGCAGTCTCTTTC+TGG | + | chr1.3:44210183-44210202 | MS.gene034931:CDS | 45.0% | |
| AAGCACTTGTGACACTGCTT+GGG | - | chr1.3:44211940-44211959 | None:intergenic | 45.0% | |
| AAGCCAAGCAGCAGAAACAT+GGG | + | chr1.3:44213455-44213474 | MS.gene034931:CDS | 45.0% | |
| AATCCAAACAGGGCCTAGTT+TGG | - | chr1.3:44210450-44210469 | None:intergenic | 45.0% | |
| AGGCCTAGCATCACAAGTTT+CGG | - | chr1.3:44212350-44212369 | None:intergenic | 45.0% | |
| AGTTGGTCCTTCCATGGATA+TGG | + | chr1.3:44213042-44213061 | MS.gene034931:CDS | 45.0% | |
| CACCCAAATAGGGCCTAATT+TGG | - | chr1.3:44211760-44211779 | None:intergenic | 45.0% | |
| CATACATTCTCCCGAGAACA+AGG | - | chr1.3:44212606-44212625 | None:intergenic | 45.0% | |
| CCATGGATATGGTTATTCGC+CGG | + | chr1.3:44213053-44213072 | MS.gene034931:CDS | 45.0% | |
| CTCCCGAGAACAAGGTTATT+AGG | - | chr1.3:44212598-44212617 | None:intergenic | 45.0% | |
| GATCCCCTACAAGGAAAGAT+TGG | + | chr1.3:44213253-44213272 | MS.gene034931:CDS | 45.0% | |
| GCATGCATCGAAAAAGCAGA+AGG | + | chr1.3:44213486-44213505 | MS.gene034931:CDS | 45.0% | |
| GGGCAGTACATACATATGCA+CGG | - | chr1.3:44212937-44212956 | None:intergenic | 45.0% | |
| GTCAAAAAGGATCCCCTACA+AGG | + | chr1.3:44213244-44213263 | MS.gene034931:CDS | 45.0% | |
| GTTTCACCACCAGCTTCAAA+AGG | - | chr1.3:44210139-44210158 | None:intergenic | 45.0% | |
| TAAGCACTTGTGACACTGCT+TGG | - | chr1.3:44211941-44211960 | None:intergenic | 45.0% | |
| TACCCGAAACTTGTGATGCT+AGG | + | chr1.3:44212344-44212363 | MS.gene034931:intron | 45.0% | |
| TCCATAAGCTCTCCTTAGCA+GGG | + | chr1.3:44210631-44210650 | MS.gene034931:intron | 45.0% | |
| TTCCATAAGCTCTCCTTAGC+AGG | + | chr1.3:44210630-44210649 | MS.gene034931:intron | 45.0% | |
| TTTCAGAACCGCCACAATCA+AGG | + | chr1.3:44209802-44209821 | MS.gene034931:CDS | 45.0% | |
| TTTCATTAGGAGGACGATGC+CGG | - | chr1.3:44213075-44213094 | None:intergenic | 45.0% | |
| ! | CACATTCTTTTGTTGGCAGC+TGG | + | chr1.3:44212844-44212863 | MS.gene034931:intron | 45.0% |
| !! | ACTTGATCTTTTTCGCGGAG+AGG | + | chr1.3:44212795-44212814 | MS.gene034931:CDS | 45.0% |
| !!! | GTTTTGGAGCACGTTTCTTG+AGG | - | chr1.3:44209903-44209922 | None:intergenic | 45.0% |
| ACACTGCTTGGGAGAGCTTA+TGG | - | chr1.3:44211929-44211948 | None:intergenic | 50.0% | |
| ACCCTGCTAAGGAGAGCTTA+TGG | - | chr1.3:44210635-44210654 | None:intergenic | 50.0% | |
| AGAACCGCCACAACCCATAA+GGG | + | chr1.3:44209868-44209887 | MS.gene034931:CDS | 50.0% | |
| AGTGTGCTCCACCTTGATTG+TGG | - | chr1.3:44209816-44209835 | None:intergenic | 50.0% | |
| CCGGCGAATAACCATATCCA+TGG | - | chr1.3:44213056-44213075 | None:intergenic | 50.0% | |
| GAAGCCAAGCAGCAGAAACA+TGG | + | chr1.3:44213454-44213473 | MS.gene034931:CDS | 50.0% | |
| GGCCTAGCATCACAAGTTTC+GGG | - | chr1.3:44212349-44212368 | None:intergenic | 50.0% | |
| GTCCCTCTTACCTTCTGATC+TGG | - | chr1.3:44213292-44213311 | None:intergenic | 50.0% | |
| TACATATGCACGGTCCACTC+CGG | - | chr1.3:44212927-44212946 | None:intergenic | 50.0% | |
| TACTGCCCTGTCTCCAACTA+AGG | + | chr1.3:44212949-44212968 | MS.gene034931:CDS | 50.0% | |
| TGGCACAGTTGTCCCAAGAA+TGG | + | chr1.3:44213009-44213028 | MS.gene034931:CDS | 50.0% | |
| ! | ACTCCCATGTTTCTGCTGCT+TGG | - | chr1.3:44213461-44213480 | None:intergenic | 50.0% |
| ! | AGCTGGTGGTGAAACCTCTT+TGG | + | chr1.3:44210144-44210163 | MS.gene034931:CDS | 50.0% |
| ! | GAGTTTGCCCTTATGGGTTG+TGG | - | chr1.3:44209878-44209897 | None:intergenic | 50.0% |
| ! | GGTAGAAGTTGGTCCTTCCA+TGG | + | chr1.3:44213036-44213055 | MS.gene034931:CDS | 50.0% |
| ! | GTTTCTGCTGCTTGGCTTCT+CGG | - | chr1.3:44213453-44213472 | None:intergenic | 50.0% |
| ! | TCTGAAACTGTGCGGTGTGA+GGG | - | chr1.3:44209789-44209808 | None:intergenic | 50.0% |
| ! | TTTGCCCTTATGGGTTGTGG+CGG | - | chr1.3:44209875-44209894 | None:intergenic | 50.0% |
| !! | GGCGGTTCTGAATTCTGAGA+AGG | - | chr1.3:44209857-44209876 | None:intergenic | 50.0% |
| !! | TTCTGAAACTGTGCGGTGTG+AGG | - | chr1.3:44209790-44209809 | None:intergenic | 50.0% |
| AAGCACTCGTCACCCTGCTA+AGG | - | chr1.3:44210646-44210665 | None:intergenic | 55.0% | |
| CAGAACCGCCACAACCCATA+AGG | + | chr1.3:44209867-44209886 | MS.gene034931:CDS | 55.0% | |
| CAGAACCGCCACAATCAAGG+TGG | + | chr1.3:44209805-44209824 | MS.gene034931:CDS | 55.0% | |
| CTGAAACTGTGCGGTGTGAG+GGG | - | chr1.3:44209788-44209807 | None:intergenic | 55.0% | |
| GAGGGCGAGTTTGCCCTTAT+GGG | - | chr1.3:44209884-44209903 | None:intergenic | 55.0% | |
| GCAGGGTGACGAGTGCTTAT+TGG | + | chr1.3:44210648-44210667 | MS.gene034931:intron | 55.0% | |
| GTGCTCCACCTTGATTGTGG+CGG | - | chr1.3:44209813-44209832 | None:intergenic | 55.0% | |
| TGAGGGCGAGTTTGCCCTTA+TGG | - | chr1.3:44209885-44209904 | None:intergenic | 55.0% | |
| !! | GTGGCGGTTCTGAAACTGTG+CGG | - | chr1.3:44209797-44209816 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 44209781 | 44213522 | 44209781 | ID=MS.gene034931 |
| chr1.3 | mRNA | 44209781 | 44213522 | 44209781 | ID=MS.gene034931.t1;Parent=MS.gene034931 |
| chr1.3 | exon | 44209781 | 44209924 | 44209781 | ID=MS.gene034931.t1.exon1;Parent=MS.gene034931.t1 |
| chr1.3 | CDS | 44209781 | 44209924 | 44209781 | ID=cds.MS.gene034931.t1;Parent=MS.gene034931.t1 |
| chr1.3 | exon | 44210001 | 44210204 | 44210001 | ID=MS.gene034931.t1.exon2;Parent=MS.gene034931.t1 |
| chr1.3 | CDS | 44210001 | 44210204 | 44210001 | ID=cds.MS.gene034931.t1;Parent=MS.gene034931.t1 |
| chr1.3 | exon | 44212571 | 44212816 | 44212571 | ID=MS.gene034931.t1.exon3;Parent=MS.gene034931.t1 |
| chr1.3 | CDS | 44212571 | 44212816 | 44212571 | ID=cds.MS.gene034931.t1;Parent=MS.gene034931.t1 |
| chr1.3 | exon | 44212902 | 44213144 | 44212902 | ID=MS.gene034931.t1.exon4;Parent=MS.gene034931.t1 |
| chr1.3 | CDS | 44212902 | 44213144 | 44212902 | ID=cds.MS.gene034931.t1;Parent=MS.gene034931.t1 |
| chr1.3 | exon | 44213235 | 44213300 | 44213235 | ID=MS.gene034931.t1.exon5;Parent=MS.gene034931.t1 |
| chr1.3 | CDS | 44213235 | 44213300 | 44213235 | ID=cds.MS.gene034931.t1;Parent=MS.gene034931.t1 |
| chr1.3 | exon | 44213400 | 44213522 | 44213400 | ID=MS.gene034931.t1.exon6;Parent=MS.gene034931.t1 |
| chr1.3 | CDS | 44213400 | 44213522 | 44213400 | ID=cds.MS.gene034931.t1;Parent=MS.gene034931.t1 |
| Gene Sequence |
| Protein sequence |
