AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene47347

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47347.t1 MTR_1g061160 99.120 341 3 0 1 341 1 341 0.0 701
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47347.t1 AT3G23620 71.246 313 88 2 28 340 3 313 6.26e-159 447

Find 72 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTGATTGCAGTCTCTTTC+TGG 0.136562 1.1:+46488031 MS.gene47347:CDS
TGAGGGCGAGTTTGCCCTTA+TGG 0.218905 1.1:-46487730 None:intergenic
GTAATGATGGTTACGAGTTT+TGG 0.263003 1.1:-46487764 None:intergenic
ACTTCTACCAATTCCATTCT+TGG 0.274683 1.1:-46489229 None:intergenic
GTTTCTGCTGCTTGGCTTCT+CGG 0.282208 1.1:-46489657 None:intergenic
ATTCAAAACCGCACTTGTTT+TGG 0.289863 1.1:-46487886 None:intergenic
ATTTCCAATCTTTCCTTGTA+AGG 0.319160 1.1:-46489464 None:intergenic
AGTTGGTCCTTCCATGGATA+TGG 0.326164 1.1:+46489249 MS.gene47347:CDS
TCCCCAATGAAAGCCATAAA+AGG 0.334452 1.1:-46488934 None:intergenic
AGCTGGTGGTGAAACCTCTT+TGG 0.334516 1.1:+46487992 MS.gene47347:CDS
GAGGGCGAGTTTGCCCTTAT+GGG 0.337355 1.1:-46487729 None:intergenic
AAGGGACAAGCCAAAGAAAA+AGG 0.337552 1.1:+46489330 MS.gene47347:CDS
AAAGGCTTTGATCCTTCCTT+TGG 0.354826 1.1:-46488916 None:intergenic
AAGAAAACGTTGTTGCTTCA+TGG 0.355781 1.1:+46487861 MS.gene47347:CDS
GTGGAGAATTTAAATCTTGC+CGG 0.361028 1.1:+46489112 MS.gene47347:CDS
ACTCCCATGTTTCTGCTGCT+TGG 0.361871 1.1:-46489665 None:intergenic
CTCCCGAGAACAAGGTTATT+AGG 0.367924 1.1:-46488802 None:intergenic
AATTGTTTAGATTGGAGAAA+TGG 0.368193 1.1:+46489597 MS.gene47347:intron
CTTCCATGGATATGGTTATT+CGG 0.370118 1.1:+46489257 MS.gene47347:CDS
TTCACTCCTTTCGATTTATT+AGG 0.370859 1.1:-46489625 None:intergenic
ATAGGAGAAGAATGTCAAAA+AGG 0.389857 1.1:+46489438 MS.gene47347:intron
TCCTTCATCACACTTTCATT+AGG 0.397326 1.1:-46489292 None:intergenic
CTTCTACCAATTCCATTCTT+GGG 0.402072 1.1:-46489228 None:intergenic
GTCCCTCTTACCTTCTGATC+TGG 0.404383 1.1:-46489496 None:intergenic
TACTGCCCTGTCTCCAACTA+AGG 0.416338 1.1:+46489156 MS.gene47347:CDS
GATCCCTTACAAGGAAAGAT+TGG 0.422525 1.1:+46489460 MS.gene47347:CDS
AGTTGTCCCAAGAATGGAAT+TGG 0.444927 1.1:+46489222 MS.gene47347:CDS
AGACCTAATAACCTTGTTCT+CGG 0.458179 1.1:+46488799 MS.gene47347:CDS
CAGAACCGCCACAACCCATA+AGG 0.468050 1.1:+46487715 MS.gene47347:CDS
TCAGATTTATCATTTGAAGA+AGG 0.468460 1.1:+46487920 MS.gene47347:CDS
TCTGAAACTGTGCGGTGTGA+GGG 0.475218 1.1:-46487634 None:intergenic
GAGTTTGCCCTTATGGGTTG+TGG 0.476342 1.1:-46487723 None:intergenic
TGGCACAGTTGTCCCAAGAA+TGG 0.482338 1.1:+46489216 MS.gene47347:CDS
TTCATCACACTTTCATTAGG+AGG 0.486397 1.1:-46489289 None:intergenic
TTTATGGCTTTCATTGGGGA+AGG 0.487396 1.1:+46488937 MS.gene47347:CDS
TCCTAATGAAAGTGTGATGA+AGG 0.493736 1.1:+46489291 MS.gene47347:CDS
GAAGCCAAGCAGCAGAAACA+TGG 0.494056 1.1:+46489661 MS.gene47347:CDS
GTTTCACCACCAGCTTCAAA+AGG 0.496777 1.1:-46487984 None:intergenic
TTTCCAATCTTTCCTTGTAA+GGG 0.502446 1.1:-46489463 None:intergenic
TTCTGAAACTGTGCGGTGTG+AGG 0.506916 1.1:-46487635 None:intergenic
GTCTATGATCTGATAGAAGT+TGG 0.514759 1.1:+46488841 MS.gene47347:CDS
ATAAATCGAAAGGAGTGAAG+AGG 0.524729 1.1:+46489629 MS.gene47347:CDS
CATACATTCTCCCGAGAACA+AGG 0.525815 1.1:-46488810 None:intergenic
GACCTAATAACCTTGTTCTC+GGG 0.526089 1.1:+46488800 MS.gene47347:CDS
AAAACACCTTAGTTGGAGAC+AGG 0.528374 1.1:-46489162 None:intergenic
GGTAGAAGTTGGTCCTTCCA+TGG 0.530363 1.1:+46489243 MS.gene47347:CDS
AGAACCGCCACAACCCATAA+GGG 0.532404 1.1:+46487716 MS.gene47347:CDS
AGAATGGAATTGGTAGAAGT+TGG 0.538211 1.1:+46489232 MS.gene47347:CDS
TTTCAGAACCGCCACAATCA+AGG 0.545213 1.1:+46487650 MS.gene47347:CDS
CCGCCGAATAACCATATCCA+TGG 0.554120 1.1:-46489260 None:intergenic
TGATAAGAAAATAGCTCCAA+AGG 0.560881 1.1:+46488900 MS.gene47347:CDS
AGGAAGCCATGAAAACTTCA+AGG 0.562762 1.1:+46489311 MS.gene47347:CDS
TGTTTATATTCCAGATCAGA+AGG 0.574269 1.1:+46489486 MS.gene47347:CDS
TACATATGCACGGTCTACTC+CGG 0.574387 1.1:-46489131 None:intergenic
AAGCCAAGCAGCAGAAACAT+GGG 0.578219 1.1:+46489662 MS.gene47347:CDS
AAGAAAATAGCTCCAAAGGA+AGG 0.585681 1.1:+46488904 MS.gene47347:CDS
TAAATCGAAAGGAGTGAAGA+GGG 0.586006 1.1:+46489630 MS.gene47347:CDS
GAACGAACTTAAACAGCTGA+AGG 0.586198 1.1:+46488972 MS.gene47347:CDS
CTGAAACTGTGCGGTGTGAG+GGG 0.595983 1.1:-46487633 None:intergenic
GGCGGTTCTGAATTCAGAGA+AGG 0.605630 1.1:-46487702 None:intergenic
CTTCTATCAGATCATAGACA+TGG 0.608305 1.1:-46488837 None:intergenic
CGAATAACCATATCCATGGA+AGG 0.616987 1.1:-46489256 None:intergenic
GGAAGCCATGAAAACTTCAA+GGG 0.623284 1.1:+46489312 MS.gene47347:CDS
TTTGCCCTTATGGGTTGTGG+CGG 0.625672 1.1:-46487720 None:intergenic
CCATGGATATGGTTATTCGG+CGG 0.643328 1.1:+46489260 MS.gene47347:CDS
GTGCGCCACCTTGATTGTGG+CGG 0.646937 1.1:-46487658 None:intergenic
AAACACCTTAGTTGGAGACA+GGG 0.662381 1.1:-46489161 None:intergenic
TCATGGAACCAAAACAAGTG+CGG 0.674518 1.1:+46487878 MS.gene47347:CDS
TGTGTGCGCCACCTTGATTG+TGG 0.674580 1.1:-46487661 None:intergenic
GGGCAGTACATACATATGCA+CGG 0.685032 1.1:-46489141 None:intergenic
CAGAACCGCCACAATCAAGG+TGG 0.730734 1.1:+46487653 MS.gene47347:CDS
GTGGCGGTTCTGAAACTGTG+CGG 0.750122 1.1:-46487642 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTATTTTTTAGATTTAGA+GGG - chr1.1:46488651-46488670 None:intergenic 10.0%
!!! TTTTTATAGTTTTATGATTA+AGG + chr1.1:46488134-46488153 MS.gene47347:intron 10.0%
!! AACTTATAGCTTATATAAAA+TGG - chr1.1:46488392-46488411 None:intergenic 15.0%
!!! ATTATTTTTTAGATTTAGAG+GGG - chr1.1:46488650-46488669 None:intergenic 15.0%
!!! CAATTATTTTTTAGATTTAG+AGG - chr1.1:46488652-46488671 None:intergenic 15.0%
!! TATGATTAAGGAATTAGAAT+TGG + chr1.1:46488146-46488165 MS.gene47347:intron 20.0%
!!! GTACATGTTTTAAAAAAGTT+AGG + chr1.1:46488256-46488275 MS.gene47347:intron 20.0%
!!! TCGATTTTAATTGTTTAGAT+TGG + chr1.1:46489589-46489608 MS.gene47347:intron 20.0%
!!! TTATTTTTTAGATTTAGAGG+GGG - chr1.1:46488649-46488668 None:intergenic 20.0%
! AATCATGGTGTTTGATTAAA+TGG - chr1.1:46487804-46487823 None:intergenic 25.0%
! AATTGTTTAGATTGGAGAAA+TGG + chr1.1:46489597-46489616 MS.gene47347:intron 25.0%
! ACTTGAAAGATTTAGAGAAT+TGG - chr1.1:46489360-46489379 None:intergenic 25.0%
! ATGAAAAGATGAAGTAATGA+TGG - chr1.1:46487780-46487799 None:intergenic 25.0%
! TAGTTAGCAAATCTCAATAT+AGG + chr1.1:46488618-46488637 MS.gene47347:intron 25.0%
! TCAGATTTATCATTTGAAGA+AGG + chr1.1:46487920-46487939 MS.gene47347:CDS 25.0%
!! ATTGGTAGTAGATAAGTTTA+AGG + chr1.1:46488507-46488526 MS.gene47347:intron 25.0%
!! TTGGTAGTAGATAAGTTTAA+GGG + chr1.1:46488508-46488527 MS.gene47347:intron 25.0%
!!! AACTCAATTATTTTTCAGAG+GGG - chr1.1:46488677-46488696 None:intergenic 25.0%
!!! AATATTAAACCTTTTGAAGC+TGG + chr1.1:46487975-46487994 MS.gene47347:CDS 25.0%
!!! AATTGGTTTACCTTTTTCTT+TGG - chr1.1:46489343-46489362 None:intergenic 25.0%
!!! ATTAAGTTGATAATCCAAAC+AGG - chr1.1:46488302-46488321 None:intergenic 25.0%
!!! GAACTCAATTATTTTTCAGA+GGG - chr1.1:46488678-46488697 None:intergenic 25.0%
!!! GTTGGTATTGAAAATTTTAG+AGG + chr1.1:46488859-46488878 MS.gene47347:CDS 25.0%
!!! GTTGTTTTCATTAGCTATTT+TGG + chr1.1:46488409-46488428 MS.gene47347:intron 25.0%
!!! TATTGAAAATTTTAGAGGCA+TGG + chr1.1:46488864-46488883 MS.gene47347:CDS 25.0%
!!! TGAGTTTGTTTTTAAGGTTT+TGG + chr1.1:46488086-46488105 MS.gene47347:intron 25.0%
!!! TTAAGTTGATAATCCAAACA+GGG - chr1.1:46488301-46488320 None:intergenic 25.0%
AACACAAACAACATGAATCA+TGG - chr1.1:46487819-46487838 None:intergenic 30.0%
ATAGGAGAAGAATGTCAAAA+AGG + chr1.1:46489438-46489457 MS.gene47347:intron 30.0%
ATCGCTTTCCATGTAATATT+TGG - chr1.1:46488724-46488743 None:intergenic 30.0%
ATTTCCAATCTTTCCTTGTA+AGG - chr1.1:46489467-46489486 None:intergenic 30.0%
GCTCTTACTATGTATGAATA+AGG - chr1.1:46488700-46488719 None:intergenic 30.0%
TAAGAGCTCCAAATATTACA+TGG + chr1.1:46488713-46488732 MS.gene47347:intron 30.0%
TGATAAGAAAATAGCTCCAA+AGG + chr1.1:46488900-46488919 MS.gene47347:CDS 30.0%
TGTTTATATTCCAGATCAGA+AGG + chr1.1:46489486-46489505 MS.gene47347:CDS 30.0%
TTCACTCCTTTCGATTTATT+AGG - chr1.1:46489628-46489647 None:intergenic 30.0%
TTTCCAATCTTTCCTTGTAA+GGG - chr1.1:46489466-46489485 None:intergenic 30.0%
TTTGTGTAAGTGAATTGCAT+AGG + chr1.1:46488211-46488230 MS.gene47347:intron 30.0%
! GTTTTGCCTAATAAATCGAA+AGG + chr1.1:46489619-46489638 MS.gene47347:CDS 30.0%
! TAGGAATTTGAAACCAAACT+AGG + chr1.1:46488275-46488294 MS.gene47347:intron 30.0%
! TCTCTTTCACATTCTTTTGT+CGG + chr1.1:46489044-46489063 MS.gene47347:intron 30.0%
!! GGAACTCAATTATTTTTCAG+AGG - chr1.1:46488679-46488698 None:intergenic 30.0%
!! GTACTTGTTCTGTTTCTAAT+AGG + chr1.1:46489420-46489439 MS.gene47347:intron 30.0%
!! GTTGTTTGTGTTTTTGTTAC+AGG + chr1.1:46487827-46487846 MS.gene47347:intron 30.0%
!! GTTTTACTTGATCTTTTTCG+CGG + chr1.1:46488997-46489016 MS.gene47347:CDS 30.0%
!! TTTTGTTACAGGTTGAAACT+GGG + chr1.1:46487838-46487857 MS.gene47347:intron 30.0%
!! TTTTTGTTACAGGTTGAAAC+TGG + chr1.1:46487837-46487856 MS.gene47347:intron 30.0%
!!! CGTTGTTGAGTTTGTTTTTA+AGG + chr1.1:46488080-46488099 MS.gene47347:intron 30.0%
!!! GTTTGTTTTTAAGGTTTTGG+TGG + chr1.1:46488089-46488108 MS.gene47347:intron 30.0%
AAGAAAATAGCTCCAAAGGA+AGG + chr1.1:46488904-46488923 MS.gene47347:CDS 35.0%
AAGTGATGCATATGATTCAC+AGG + chr1.1:46489087-46489106 MS.gene47347:intron 35.0%
ACTTCTACCAATTCCATTCT+TGG - chr1.1:46489232-46489251 None:intergenic 35.0%
AGAATGGAATTGGTAGAAGT+TGG + chr1.1:46489232-46489251 MS.gene47347:CDS 35.0%
AGACCTAATAACCTTGTTCT+CGG + chr1.1:46488799-46488818 MS.gene47347:CDS 35.0%
ATAAATCGAAAGGAGTGAAG+AGG + chr1.1:46489629-46489648 MS.gene47347:CDS 35.0%
CATAGGCTGTTTATTCAAAC+CGG - chr1.1:46488534-46488553 None:intergenic 35.0%
CTTCCATGGATATGGTTATT+CGG + chr1.1:46489257-46489276 MS.gene47347:CDS 35.0%
CTTCTACCAATTCCATTCTT+GGG - chr1.1:46489231-46489250 None:intergenic 35.0%
CTTCTATCAGATCATAGACA+TGG - chr1.1:46488840-46488859 None:intergenic 35.0%
GTCTATGATCTGATAGAAGT+TGG + chr1.1:46488841-46488860 MS.gene47347:CDS 35.0%
GTGGAGAATTTAAATCTTGC+CGG + chr1.1:46489112-46489131 MS.gene47347:CDS 35.0%
TAAATCGAAAGGAGTGAAGA+GGG + chr1.1:46489630-46489649 MS.gene47347:CDS 35.0%
TAGTAGATAAGTTTAAGGGC+CGG + chr1.1:46488512-46488531 MS.gene47347:intron 35.0%
TCCTTCATCACACTTTCATT+AGG - chr1.1:46489295-46489314 None:intergenic 35.0%
TGCAATTCACTTACACAAAG+AGG - chr1.1:46488210-46488229 None:intergenic 35.0%
TGTGTGAAAAACACCTTAGT+TGG - chr1.1:46489172-46489191 None:intergenic 35.0%
TTCATCACACTTTCATTAGG+AGG - chr1.1:46489292-46489311 None:intergenic 35.0%
! AAGAAAACGTTGTTGCTTCA+TGG + chr1.1:46487861-46487880 MS.gene47347:CDS 35.0%
! AAGCCTTTTATGGCTTTCAT+TGG + chr1.1:46488931-46488950 MS.gene47347:CDS 35.0%
! AGCCTTTTATGGCTTTCATT+GGG + chr1.1:46488932-46488951 MS.gene47347:CDS 35.0%
! ATTCAAAACCGCACTTGTTT+TGG - chr1.1:46487889-46487908 None:intergenic 35.0%
! GTAATGATGGTTACGAGTTT+TGG - chr1.1:46487767-46487786 None:intergenic 35.0%
! TCCTAATGAAAGTGTGATGA+AGG + chr1.1:46489291-46489310 MS.gene47347:CDS 35.0%
!!! ATTAAACCTTTTGAAGCTGG+TGG + chr1.1:46487978-46487997 MS.gene47347:CDS 35.0%
AAAACACCTTAGTTGGAGAC+AGG - chr1.1:46489165-46489184 None:intergenic 40.0%
AAACACCTTAGTTGGAGACA+GGG - chr1.1:46489164-46489183 None:intergenic 40.0%
AACAAGCTGAGAACAGCTTA+TGG + chr1.1:46488444-46488463 MS.gene47347:intron 40.0%
AACTGATTGCAGTCTCTTTC+TGG + chr1.1:46488031-46488050 MS.gene47347:CDS 40.0%
AAGGGACAAGCCAAAGAAAA+AGG + chr1.1:46489330-46489349 MS.gene47347:CDS 40.0%
AGGAAGCCATGAAAACTTCA+AGG + chr1.1:46489311-46489330 MS.gene47347:CDS 40.0%
AGTTGTCCCAAGAATGGAAT+TGG + chr1.1:46489222-46489241 MS.gene47347:CDS 40.0%
ATTCCAGATCAGAAGGTAAG+AGG + chr1.1:46489493-46489512 MS.gene47347:intron 40.0%
CGAATAACCATATCCATGGA+AGG - chr1.1:46489259-46489278 None:intergenic 40.0%
GAACGAACTTAAACAGCTGA+AGG + chr1.1:46488972-46488991 MS.gene47347:CDS 40.0%
GACCTAATAACCTTGTTCTC+GGG + chr1.1:46488800-46488819 MS.gene47347:CDS 40.0%
GATCCCTTACAAGGAAAGAT+TGG + chr1.1:46489460-46489479 MS.gene47347:CDS 40.0%
GCATTGCGGTTGAAAAAATC+TGG + chr1.1:46489196-46489215 MS.gene47347:CDS 40.0%
GGAAGCCATGAAAACTTCAA+GGG + chr1.1:46489312-46489331 MS.gene47347:CDS 40.0%
GTCAAAAAGGATCCCTTACA+AGG + chr1.1:46489451-46489470 MS.gene47347:CDS 40.0%
TCATGGAACCAAAACAAGTG+CGG + chr1.1:46487878-46487897 MS.gene47347:CDS 40.0%
TCCCCAATGAAAGCCATAAA+AGG - chr1.1:46488937-46488956 None:intergenic 40.0%
TGCATATGATTCACAGGTTG+TGG + chr1.1:46489093-46489112 MS.gene47347:intron 40.0%
TTCCAGATCAGAAGGTAAGA+GGG + chr1.1:46489494-46489513 MS.gene47347:intron 40.0%
TTGTGCGAAAAACTCCAAAG+AGG - chr1.1:46488009-46488028 None:intergenic 40.0%
TTGTGCTATAAGCTGCACAT+AGG - chr1.1:46488551-46488570 None:intergenic 40.0%
TTTATGGCTTTCATTGGGGA+AGG + chr1.1:46488937-46488956 MS.gene47347:CDS 40.0%
! AAAGGCTTTGATCCTTCCTT+TGG - chr1.1:46488919-46488938 None:intergenic 40.0%
! CTTGTCCCTTGAAGTTTTCA+TGG - chr1.1:46489320-46489339 None:intergenic 40.0%
! GCCTTTTATGGCTTTCATTG+GGG + chr1.1:46488933-46488952 MS.gene47347:CDS 40.0%
! GGAAGGATCAAAGCCTTTTA+TGG + chr1.1:46488921-46488940 MS.gene47347:CDS 40.0%
! GTTGCGTGTATTTTGCAGTA+TGG + chr1.1:46488760-46488779 MS.gene47347:intron 40.0%
! TTTTCACACACTGTGCATTG+CGG + chr1.1:46489182-46489201 MS.gene47347:CDS 40.0%
!!! TTTTGGAGCACGTTTCTTGA+GGG - chr1.1:46487750-46487769 None:intergenic 40.0%
AAACCAAACTAGGCCCTGTT+TGG + chr1.1:46488285-46488304 MS.gene47347:intron 45.0%
AAGCCAAGCAGCAGAAACAT+GGG + chr1.1:46489662-46489681 MS.gene47347:CDS 45.0%
AATCCAAACAGGGCCTAGTT+TGG - chr1.1:46488291-46488310 None:intergenic 45.0%
AGTTGGTCCTTCCATGGATA+TGG + chr1.1:46489249-46489268 MS.gene47347:CDS 45.0%
CATACATTCTCCCGAGAACA+AGG - chr1.1:46488813-46488832 None:intergenic 45.0%
CCATGGATATGGTTATTCGG+CGG + chr1.1:46489260-46489279 MS.gene47347:CDS 45.0%
CTCCCGAGAACAAGGTTATT+AGG - chr1.1:46488805-46488824 None:intergenic 45.0%
GCATGCATCGAAAAAGCAGA+AGG + chr1.1:46489693-46489712 MS.gene47347:CDS 45.0%
GGGCAGTACATACATATGCA+CGG - chr1.1:46489144-46489163 None:intergenic 45.0%
GTTTCACCACCAGCTTCAAA+AGG - chr1.1:46487987-46488006 None:intergenic 45.0%
TACATATGCACGGTCTACTC+CGG - chr1.1:46489134-46489153 None:intergenic 45.0%
TCCATAAGCTCTCCTTAGCA+GGG + chr1.1:46488472-46488491 MS.gene47347:intron 45.0%
TTCCATAAGCTCTCCTTAGC+AGG + chr1.1:46488471-46488490 MS.gene47347:intron 45.0%
TTTCAGAACCGCCACAATCA+AGG + chr1.1:46487650-46487669 MS.gene47347:CDS 45.0%
!! ACTTGATCTTTTTCGCGGAG+AGG + chr1.1:46489002-46489021 MS.gene47347:CDS 45.0%
!!! GTTTTGGAGCACGTTTCTTG+AGG - chr1.1:46487751-46487770 None:intergenic 45.0%
ACCCTGCTAAGGAGAGCTTA+TGG - chr1.1:46488476-46488495 None:intergenic 50.0%
AGAACCGCCACAACCCATAA+GGG + chr1.1:46487716-46487735 MS.gene47347:CDS 50.0%
CCGCCGAATAACCATATCCA+TGG - chr1.1:46489263-46489282 None:intergenic 50.0%
GAAGCCAAGCAGCAGAAACA+TGG + chr1.1:46489661-46489680 MS.gene47347:CDS 50.0%
GTCCCTCTTACCTTCTGATC+TGG - chr1.1:46489499-46489518 None:intergenic 50.0%
TACTGCCCTGTCTCCAACTA+AGG + chr1.1:46489156-46489175 MS.gene47347:CDS 50.0%
TGGCACAGTTGTCCCAAGAA+TGG + chr1.1:46489216-46489235 MS.gene47347:CDS 50.0%
! ACTCCCATGTTTCTGCTGCT+TGG - chr1.1:46489668-46489687 None:intergenic 50.0%
! AGCTGGTGGTGAAACCTCTT+TGG + chr1.1:46487992-46488011 MS.gene47347:CDS 50.0%
! CACATTCTTTTGTCGGCAGC+TGG + chr1.1:46489051-46489070 MS.gene47347:intron 50.0%
! GAGTTTGCCCTTATGGGTTG+TGG - chr1.1:46487726-46487745 None:intergenic 50.0%
! GGTAGAAGTTGGTCCTTCCA+TGG + chr1.1:46489243-46489262 MS.gene47347:CDS 50.0%
! GTTTCTGCTGCTTGGCTTCT+CGG - chr1.1:46489660-46489679 None:intergenic 50.0%
! TCTGAAACTGTGCGGTGTGA+GGG - chr1.1:46487637-46487656 None:intergenic 50.0%
! TTTGCCCTTATGGGTTGTGG+CGG - chr1.1:46487723-46487742 None:intergenic 50.0%
!! GGCGGTTCTGAATTCAGAGA+AGG - chr1.1:46487705-46487724 None:intergenic 50.0%
!! TTCTGAAACTGTGCGGTGTG+AGG - chr1.1:46487638-46487657 None:intergenic 50.0%
AAGCACTCGTCACCCTGCTA+AGG - chr1.1:46488487-46488506 None:intergenic 55.0%
CAGAACCGCCACAACCCATA+AGG + chr1.1:46487715-46487734 MS.gene47347:CDS 55.0%
CAGAACCGCCACAATCAAGG+TGG + chr1.1:46487653-46487672 MS.gene47347:CDS 55.0%
CTGAAACTGTGCGGTGTGAG+GGG - chr1.1:46487636-46487655 None:intergenic 55.0%
GAGGGCGAGTTTGCCCTTAT+GGG - chr1.1:46487732-46487751 None:intergenic 55.0%
GCAGGGTGACGAGTGCTTAT+TGG + chr1.1:46488489-46488508 MS.gene47347:intron 55.0%
TGAGGGCGAGTTTGCCCTTA+TGG - chr1.1:46487733-46487752 None:intergenic 55.0%
TGTGTGCGCCACCTTGATTG+TGG - chr1.1:46487664-46487683 None:intergenic 55.0%
!! GTGGCGGTTCTGAAACTGTG+CGG - chr1.1:46487645-46487664 None:intergenic 55.0%
GTGCGCCACCTTGATTGTGG+CGG - chr1.1:46487661-46487680 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 46487629 46489729 46487629 ID=MS.gene47347
chr1.1 mRNA 46487629 46489729 46487629 ID=MS.gene47347.t1;Parent=MS.gene47347
chr1.1 exon 46487629 46487772 46487629 ID=MS.gene47347.t1.exon1;Parent=MS.gene47347.t1
chr1.1 CDS 46487629 46487772 46487629 ID=cds.MS.gene47347.t1;Parent=MS.gene47347.t1
chr1.1 exon 46487849 46488052 46487849 ID=MS.gene47347.t1.exon2;Parent=MS.gene47347.t1
chr1.1 CDS 46487849 46488052 46487849 ID=cds.MS.gene47347.t1;Parent=MS.gene47347.t1
chr1.1 exon 46488778 46489023 46488778 ID=MS.gene47347.t1.exon3;Parent=MS.gene47347.t1
chr1.1 CDS 46488778 46489023 46488778 ID=cds.MS.gene47347.t1;Parent=MS.gene47347.t1
chr1.1 exon 46489109 46489351 46489109 ID=MS.gene47347.t1.exon4;Parent=MS.gene47347.t1
chr1.1 CDS 46489109 46489351 46489109 ID=cds.MS.gene47347.t1;Parent=MS.gene47347.t1
chr1.1 exon 46489442 46489507 46489442 ID=MS.gene47347.t1.exon5;Parent=MS.gene47347.t1
chr1.1 CDS 46489442 46489507 46489442 ID=cds.MS.gene47347.t1;Parent=MS.gene47347.t1
chr1.1 exon 46489607 46489729 46489607 ID=MS.gene47347.t1.exon6;Parent=MS.gene47347.t1
chr1.1 CDS 46489607 46489729 46489607 ID=cds.MS.gene47347.t1;Parent=MS.gene47347.t1
Gene Sequence

>MS.gene47347

ATGGCCCCTCACACCGCACAGTTTCAGAACCGCCACAATCAAGGTGGCGCACACACACACAGTAGTTCAACTGCCTTCTCTGAATTCAGAACCGCCACAACCCATAAGGGCAAACTCGCCCTCAAGAAACGTGCTCCAAAACTCGTAACCATCATTACTTCATCTTTTCATTCCATTTAATCAAACACCATGATTCATGTTGTTTGTGTTTTTGTTACAGGTTGAAACTGGGAAGAAAACGTTGTTGCTTCATGGAACCAAAACAAGTGCGGTTTTGAATGCTGTGTTGACTCAGATTTATCATTTGAAGAAGGAAAGTGCGATTAAGTATAGTCGTAAGAATGATAATATTAAACCTTTTGAAGCTGGTGGTGAAACCTCTTTGGAGTTTTTCGCACAAAAAACTGATTGCAGTCTCTTTCTGGTAATTTCTCTCATTTTGTTCTTCAATCGTTGTTGAGTTTGTTTTTAAGGTTTTGGTGGAATTTGTTTTTGTTTTGCTTTGTTTTTATAGTTTTATGATTAAGGAATTAGAATTGGTGTTAGTATTGATTTAATTTTAATTTTAATTTGTTCTACCTCTTTGTGTAAGTGAATTGCATAGGTACTTGTTTTTATCATTTTGAAGTACATGTTTTAAAAAAGTTAGGAATTTGAAACCAAACTAGGCCCTGTTTGGATTATCAACTTAATAATACGTTTATCAAACAAGTGCTTATGTGTAAAAAAAATCTATAAAATAAGATGAAATAAAGTCAAACCATTTTATATAAGCTATAAGTTGTTTTCATTAGCTATTTTGGCAAGCTTATGAAAACAAGCTGAGAACAGCTTATGGTTGTTTCCATAAGCTCTCCTTAGCAGGGTGACGAGTGCTTATTGGTAGTAGATAAGTTTAAGGGCCGGTTTGAATAAACAGCCTATGTGCAGCTTATAGCACAAGCACTTATCATAATAAGCACAAGCACTTATCATAATACGTGTTATAATAGTTAGCAAATCTCAATATAGGCTTGTCCCCCTCTAAATCTAAAAAATAATTGAGCCCCTCTGAAAAATAATTGAGTTCCTTATTCATACATAGTAAGAGCTCCAAATATTACATGGAAAGCGATTTTGTTTTGATTTAATGTTGCGTGTATTTTGCAGTATGGATCTCACTCAAAGAAGAGACCTAATAACCTTGTTCTCGGGAGAATGTATGATTTCCATGTCTATGATCTGATAGAAGTTGGTATTGAAAATTTTAGAGGCATGGAGTCATTTGATTATGATAAGAAAATAGCTCCAAAGGAAGGATCAAAGCCTTTTATGGCTTTCATTGGGGAAGGATTTGAGTCTGTGAACGAACTTAAACAGCTGAAGGAAGTTTTACTTGATCTTTTTCGCGGAGAGGTGCGTCTTTGTTTTTTCTTTCTCTTTCACATTCTTTTGTCGGCAGCTGGACTGTGTTAACAGAAGTGATGCATATGATTCACAGGTTGTGGAGAATTTAAATCTTGCCGGAGTAGACCGTGCATATGTATGTACTGCCCTGTCTCCAACTAAGGTGTTTTTCACACACTGTGCATTGCGGTTGAAAAAATCTGGCACAGTTGTCCCAAGAATGGAATTGGTAGAAGTTGGTCCTTCCATGGATATGGTTATTCGGCGGCATCGTCCTCCTAATGAAAGTGTGATGAAGGAAGCCATGAAAACTTCAAGGGACAAGCCAAAGAAAAAGGTAAACCAATTCTCTAAATCTTTCAAGTTTATCTGTTAATGTAAAATGAAGTTGCATGTCTAAATCGTGTACTTGTTCTGTTTCTAATAGGAGAAGAATGTCAAAAAGGATCCCTTACAAGGAAAGATTGGAAATGTTTATATTCCAGATCAGAAGGTAAGAGGGACTATTCTTGTTCTTTGCTTTAACTATTTTAGTTAGTTCATTCAACTTAGTACATTGAATTTGCTTATGATATCGATTTTAATTGTTTAGATTGGAGAAATGGTTTTGCCTAATAAATCGAAAGGAGTGAAGAGGGAGCGCCGAGAAGCCAAGCAGCAGAAACATGGGAGTGATGAGCATGCATCGAAAAAGCAGAAGGATGAATCTTCCTAA
Protein sequence

>MS.gene47347.t1

MAPHTAQFQNRHNQGGAHTHSSSTAFSEFRTATTHKGKLALKKRAPKLVETGKKTLLLHGTKTSAVLNAVLTQIYHLKKESAIKYSRKNDNIKPFEAGGETSLEFFAQKTDCSLFLYGSHSKKRPNNLVLGRMYDFHVYDLIEVGIENFRGMESFDYDKKIAPKEGSKPFMAFIGEGFESVNELKQLKEVLLDLFRGEVVENLNLAGVDRAYVCTALSPTKVFFTHCALRLKKSGTVVPRMELVEVGPSMDMVIRRHRPPNESVMKEAMKTSRDKPKKKEKNVKKDPLQGKIGNVYIPDQKIGEMVLPNKSKGVKRERREAKQQKHGSDEHASKKQKDESS