AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene002204

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002204.t1 MTR_2g008870 94.562 331 16 2 1 329 1 331 0.0 629
MS.gene002204.t1 MTR_2g008870 95.423 284 12 1 1 283 1 284 0.0 554
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002204.t1 AT2G37990 60.615 325 119 3 1 324 1 317 4.75e-131 376

Find 78 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCAAAATTACTGTGCTTT+TGG 0.169446 2.3:+73819389 None:intergenic
GGCCAAAACCTCCTACTAAA+TGG 0.206025 2.3:-73822093 MS.gene002204:CDS
CGATTCTTTCCTTTATGTTT+TGG 0.214740 2.3:+73819877 None:intergenic
TCCCATTTAGTAGGAGGTTT+TGG 0.249068 2.3:+73822091 None:intergenic
GAGTATATCATGATTATTCT+TGG 0.294298 2.3:+73819653 None:intergenic
CTCGGGGTAATCTGGTGGTT+GGG 0.302345 2.3:+73822244 None:intergenic
GGTGAGTGGGTTCCTGTTAT+AGG 0.329789 2.3:+73820006 None:intergenic
GTAGGTTTAGCCTCAATAAT+AGG 0.359792 2.3:+73821841 None:intergenic
GTGAAGGAGTGTTTACAAAA+AGG 0.371694 2.3:-73822354 MS.gene002204:CDS
ATATCCATGTCTGCGTTTCC+AGG 0.400440 2.3:+73821891 None:intergenic
GCGACATCTTTGCCTATAAC+AGG 0.413812 2.3:-73820018 MS.gene002204:CDS
CCCTCTACTCAAGATGTTGA+AGG 0.416054 2.3:-73822288 MS.gene002204:CDS
CTGCCGGTAGCAGAAGGAAC+AGG 0.421319 2.3:-73819729 MS.gene002204:CDS
ATTCTCTATTAGGGTTGAAC+TGG 0.421517 2.3:-73822376 MS.gene002204:intron
CCAAGAGAAAAGAAAACAAA+AGG 0.423905 2.3:-73821169 MS.gene002204:CDS
GGTAATCTGGTGGTTGGGGC+AGG 0.425628 2.3:+73822249 None:intergenic
GCAAACAGGTCCCATTTAGT+AGG 0.428944 2.3:+73822082 None:intergenic
TCTCGGGGTAATCTGGTGGT+TGG 0.429457 2.3:+73822243 None:intergenic
GGTTGACCTCGGTAATCTAA+TGG 0.449578 2.3:-73822523 MS.gene002204:CDS
CAAGTTTATGATGAACCATC+TGG 0.452578 2.3:-73821916 MS.gene002204:CDS
GCCAAAACCTCCTACTAAAT+GGG 0.459534 2.3:-73822092 MS.gene002204:CDS
GAAAAGCCTCCAAAACATAA+AGG 0.462069 2.3:-73819886 MS.gene002204:CDS
TCGGGGTAATCTGGTGGTTG+GGG 0.468261 2.3:+73822245 None:intergenic
TTGGCAAAAGGATCCTCGTC+TGG 0.469582 2.3:+73821188 None:intergenic
ACCCCTGTTCCTTCTGCTAC+CGG 0.485546 2.3:+73819726 None:intergenic
GCCTCAACTGCCACAGCTAG+TGG 0.485917 2.3:-73819937 MS.gene002204:CDS
AGGAACAGGGGTAGGATCAA+AGG 0.493785 2.3:-73819715 MS.gene002204:CDS
GGCTGCTAAGAATTTGTTCG+AGG 0.502076 2.3:-73822544 MS.gene002204:CDS
CAAGAGAAAAGAAAACAAAA+GGG 0.503360 2.3:-73821168 MS.gene002204:CDS
AAGGTTACCAAGGATGAATT+AGG 0.504736 2.3:-73819976 MS.gene002204:CDS
GATGAATTAGGCAGTGTAGC+AGG 0.505642 2.3:-73819964 MS.gene002204:CDS
CACAGTGACCAATGTGAAGA+AGG 0.507110 2.3:-73819510 MS.gene002204:CDS
CTGCGTTTCCAGGTTCCAGA+TGG 0.508540 2.3:+73821901 None:intergenic
TACACTGCCTAATTCATCCT+TGG 0.511559 2.3:+73819969 None:intergenic
ATGATGAACCATCTGGAACC+TGG 0.518041 2.3:-73821909 MS.gene002204:CDS
AACCCACTCACCACAAAAGA+AGG 0.519084 2.3:-73819995 MS.gene002204:CDS
AGAAGCTATTCCTATTATTG+AGG 0.529821 2.3:-73821851 MS.gene002204:CDS
CAAAGTTTGGGGCTTTACCT+AGG 0.530560 2.3:-73821094 MS.gene002204:intron
ACCACTAGCTGTGGCAGTTG+AGG 0.531694 2.3:+73819936 None:intergenic
AAGGAAAATGGAGATTGAGA+TGG 0.536528 2.3:-73822568 None:intergenic
CATACCCTTCTCAACAATCC+AGG 0.537224 2.3:-73822482 MS.gene002204:intron
GAAAATGGAGATTGAGATGG+AGG 0.541911 2.3:-73822565 None:intergenic
AACAGGTCCCATTTAGTAGG+AGG 0.542260 2.3:+73822085 None:intergenic
TGAAGAAGGAGAAAAGCAGA+AGG 0.542891 2.3:-73819496 MS.gene002204:CDS
ACCATGCAGCCATGTTCAGT+TGG 0.543010 2.3:-73820043 MS.gene002204:intron
TATTAGGGTTGAACTGGTGA+AGG 0.557428 2.3:-73822370 MS.gene002204:intron
TAGTTCCTGCCGGTAGCAGA+AGG 0.558864 2.3:-73819735 MS.gene002204:CDS
ACATACCTGGATTGTTGAGA+AGG 0.562948 2.3:+73822477 None:intergenic
CCTTCAACATCTTGAGTAGA+GGG 0.564606 2.3:+73822288 None:intergenic
ATGTCGCGGCCAACTGAACA+TGG 0.570065 2.3:+73820034 None:intergenic
TCAACTGCCACAGCTAGTGG+TGG 0.576419 2.3:-73819934 MS.gene002204:CDS
CTGTTCCTTCTGCTACCGGC+AGG 0.578497 2.3:+73819730 None:intergenic
TTGGGGCAGGCAATTGAACG+AGG 0.586894 2.3:+73822262 None:intergenic
ACCTTCAACATCTTGAGTAG+AGG 0.587465 2.3:+73822287 None:intergenic
TGGAATTACTTACCATCGGT+AGG 0.591410 2.3:+73821823 None:intergenic
TGCCGGTAGCAGAAGGAACA+GGG 0.605130 2.3:-73819728 MS.gene002204:CDS
CATACCTGGATTGTTGAGAA+GGG 0.605884 2.3:+73822478 None:intergenic
CAGAAGGAATGATAAATCGA+AGG 0.608042 2.3:-73819480 MS.gene002204:CDS
GGAACCTGGAAACGCAGACA+TGG 0.610484 2.3:-73821895 MS.gene002204:CDS
AAGAGAAAAGAAAACAAAAG+GGG 0.617318 2.3:-73821167 MS.gene002204:CDS
TGGGGCAGGCAATTGAACGA+GGG 0.618140 2.3:+73822263 None:intergenic
AGGGGTAGGATCAAAGGAGA+GGG 0.618168 2.3:-73819709 MS.gene002204:CDS
AGGCATTATTAAGCGGAACA+AGG 0.619070 2.3:-73821944 MS.gene002204:CDS
CAACTGCCACAGCTAGTGGT+GGG 0.621815 2.3:-73819933 MS.gene002204:CDS
GTTATGCAGGCATTATTAAG+CGG 0.622663 2.3:-73821951 MS.gene002204:intron
GTAGCAGAAGGAACAGGGGT+AGG 0.632666 2.3:-73819723 MS.gene002204:CDS
AAACTTCCCACCACTAGCTG+TGG 0.634673 2.3:+73819927 None:intergenic
GTATGAATGATGAGAGTCGA+AGG 0.637332 2.3:+73822500 None:intergenic
AATTTGTTCGAGGTTGACCT+CGG 0.638182 2.3:-73822534 MS.gene002204:CDS
GGGGCAGGCAATTGAACGAG+GGG 0.642046 2.3:+73822264 None:intergenic
TGATATACTCAATGTTAACA+AGG 0.643030 2.3:-73819640 MS.gene002204:intron
CAGGGGTAGGATCAAAGGAG+AGG 0.644223 2.3:-73819710 MS.gene002204:CDS
ATTGAGGCTAAACCTACCGA+TGG 0.658675 2.3:-73821835 MS.gene002204:intron
TGTTATAGGCAAAGATGTCG+CGG 0.661140 2.3:+73820020 None:intergenic
ACCACAAAAGAAGGTTACCA+AGG 0.667489 2.3:-73819986 MS.gene002204:CDS
ACATAAAGGAAAGAATCGAA+AGG 0.670337 2.3:-73819872 MS.gene002204:intron
GCCGGTAGCAGAAGGAACAG+GGG 0.714140 2.3:-73819727 MS.gene002204:CDS
CGAAGGCCATTAGATTACCG+AGG 0.720268 2.3:+73822517 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTGTAAATTCTTTA+TGG + chr2.3:73821334-73821353 None:intergenic 10.0%
!! AAACTATTTATAAATGTTAA+GGG - chr2.3:73820598-73820617 MS.gene002204:intron 10.0%
!! CAAACTATTTATAAATGTTA+AGG - chr2.3:73820597-73820616 MS.gene002204:intron 15.0%
!! TATTAATCTATTCTCTATTA+GGG - chr2.3:73819573-73819592 MS.gene002204:intron 15.0%
!! TTATTAATCTATTCTCTATT+AGG - chr2.3:73819572-73819591 MS.gene002204:intron 15.0%
!! TTGATAAAAATGAGAAAAAT+CGG - chr2.3:73820819-73820838 MS.gene002204:intron 15.0%
!!! ACTTTTGTTATTATTCTTTT+TGG - chr2.3:73820470-73820489 MS.gene002204:intron 15.0%
!!! CTTTTGTTATTATTCTTTTT+GGG - chr2.3:73820471-73820490 MS.gene002204:intron 15.0%
!! AAAGTTCAGAAGTAATAAAA+TGG + chr2.3:73819987-73820006 None:intergenic 20.0%
!! AAATTTCTTCTTCAATAAGA+AGG + chr2.3:73819756-73819775 None:intergenic 20.0%
!! AATTTCTTCTTCAATAAGAA+GGG + chr2.3:73819755-73819774 None:intergenic 20.0%
!! ATTGAAAAATCAAATTGAAG+TGG + chr2.3:73819535-73819554 None:intergenic 20.0%
!! GATTATTTACAAATCTAGAT+TGG + chr2.3:73821280-73821299 None:intergenic 20.0%
!! GTTATTAATAATGAGTTTCT+AGG - chr2.3:73821157-73821176 MS.gene002204:CDS 20.0%
!! TTTGCAAATCTAATTAACAA+AGG + chr2.3:73821509-73821528 None:intergenic 20.0%
!!! ACATTTTAACTTTATCCATA+AGG - chr2.3:73821436-73821455 MS.gene002204:intron 20.0%
!!! ATAGGTTTCAATTTTAACTT+TGG - chr2.3:73820212-73820231 MS.gene002204:intron 20.0%
! AAAGATCCAACATCTAAATT+AGG - chr2.3:73820324-73820343 MS.gene002204:intron 25.0%
! AAGAGAAAAGAAAACAAAAG+GGG - chr2.3:73820791-73820810 MS.gene002204:intron 25.0%
! ACATAAACAACATCAACAAA+AGG + chr2.3:73819923-73819942 None:intergenic 25.0%
! ACTAGATGAAAAGATAACAA+AGG + chr2.3:73822207-73822226 None:intergenic 25.0%
! AGCTATCAATTACTTTATAC+AGG - chr2.3:73821180-73821199 MS.gene002204:CDS 25.0%
! CAAGAGAAAAGAAAACAAAA+GGG - chr2.3:73820790-73820809 MS.gene002204:intron 25.0%
! GAGTATATCATGATTATTCT+TGG + chr2.3:73822308-73822327 None:intergenic 25.0%
! GATAAAGTTAAAATGTGAAG+TGG + chr2.3:73821674-73821693 None:intergenic 25.0%
! GCTATCAATTACTTTATACA+GGG - chr2.3:73821181-73821200 MS.gene002204:CDS 25.0%
! TCGACAAATAATTGTTTACA+AGG + chr2.3:73822149-73822168 None:intergenic 25.0%
! TGATATACTCAATGTTAACA+AGG - chr2.3:73822318-73822337 MS.gene002204:CDS 25.0%
! TGTAAGTATACAAATAGCAA+TGG + chr2.3:73821052-73821071 None:intergenic 25.0%
! TGTATACTTACATCTGTATT+TGG - chr2.3:73821060-73821079 MS.gene002204:intron 25.0%
! TTAGTACACACATGTTAAAT+AGG + chr2.3:73820254-73820273 None:intergenic 25.0%
! TTGTTTATGTTGTCTGATTT+GGG - chr2.3:73819933-73819952 MS.gene002204:CDS 25.0%
!! ATAACCAAACGTTTGATAAT+AGG + chr2.3:73820170-73820189 None:intergenic 25.0%
!! TAACCAAACGTTTGATAATA+GGG + chr2.3:73820169-73820188 None:intergenic 25.0%
!! TTACTGTTTTACAAGTTTCT+TGG - chr2.3:73821015-73821034 MS.gene002204:intron 25.0%
!!! GACAAACTAACCTTTATTTT+TGG + chr2.3:73819901-73819920 None:intergenic 25.0%
AAAACCTCAAAGCTAGTTAT+TGG + chr2.3:73820908-73820927 None:intergenic 30.0%
AAGTTTGACAAAAAATTGCC+AGG - chr2.3:73822048-73822067 MS.gene002204:intron 30.0%
AATCCCTATTATCAAACGTT+TGG - chr2.3:73820163-73820182 MS.gene002204:intron 30.0%
AATCGTAAGAATAGAACAAG+AGG + chr2.3:73820626-73820645 None:intergenic 30.0%
AATGAAGCATAGAAACCTTA+TGG + chr2.3:73821696-73821715 None:intergenic 30.0%
AATGTGGAATTACTTACCAT+CGG + chr2.3:73820142-73820161 None:intergenic 30.0%
ACATAAAGGAAAGAATCGAA+AGG - chr2.3:73822086-73822105 MS.gene002204:CDS 30.0%
AGAAGCTATTCCTATTATTG+AGG - chr2.3:73820107-73820126 MS.gene002204:intron 30.0%
AGCATAATATGAGACAACAA+AGG + chr2.3:73821751-73821770 None:intergenic 30.0%
ATGGTTCCTAATTTAGATGT+TGG + chr2.3:73820333-73820352 None:intergenic 30.0%
ATGTAGTGCTATATCGTTAA+TGG - chr2.3:73820727-73820746 MS.gene002204:intron 30.0%
CATGCTATGATTAAACATTG+TGG + chr2.3:73820373-73820392 None:intergenic 30.0%
CCAAGAGAAAAGAAAACAAA+AGG - chr2.3:73820789-73820808 MS.gene002204:intron 30.0%
GAAAAATCAAATTGAAGTGG+CGG + chr2.3:73819532-73819551 None:intergenic 30.0%
GTGTTTATCATTTGCTCATA+AGG - chr2.3:73819818-73819837 MS.gene002204:intron 30.0%
GTTGTTTATGTTGTCTGATT+TGG - chr2.3:73819932-73819951 MS.gene002204:CDS 30.0%
TCAAAGCTAGTTATTGGAAA+TGG + chr2.3:73820902-73820921 None:intergenic 30.0%
TGAAAAATGCTGCAAAGTTT+GGG - chr2.3:73820852-73820871 MS.gene002204:intron 30.0%
TTGAAAAATGCTGCAAAGTT+TGG - chr2.3:73820851-73820870 MS.gene002204:intron 30.0%
! CGATTCTTTCCTTTATGTTT+TGG + chr2.3:73822084-73822103 None:intergenic 30.0%
! TTGATAATAGGGATTGAATG+TGG + chr2.3:73820158-73820177 None:intergenic 30.0%
! TTTTCTTTTCTCTTGGCAAA+AGG + chr2.3:73820785-73820804 None:intergenic 30.0%
!! ATTTCCAATAACTAGCTTTG+AGG - chr2.3:73820901-73820920 MS.gene002204:intron 30.0%
!! CAGAAGAAGCCTTTTAAAAA+GGG - chr2.3:73822530-73822549 MS.gene002204:CDS 30.0%
!! TCAGAAGAAGCCTTTTAAAA+AGG - chr2.3:73822529-73822548 MS.gene002204:CDS 30.0%
!! TTCTTTCCTTTATGTTTTGG+AGG + chr2.3:73822081-73822100 None:intergenic 30.0%
!!! AACCTTTATTTTTGGCAAAC+AGG + chr2.3:73819893-73819912 None:intergenic 30.0%
!!! CCTTTTGTTTTCTTTTCTCT+TGG + chr2.3:73820792-73820811 None:intergenic 30.0%
AACAATGCATGGATATGTCA+AGG + chr2.3:73821097-73821116 None:intergenic 35.0%
AAGGTTACCAAGGATGAATT+AGG - chr2.3:73821982-73822001 MS.gene002204:intron 35.0%
AATGGTTAAGAGAGTTACCT+AGG + chr2.3:73820884-73820903 None:intergenic 35.0%
AATTCCACTGTAATCGTTAC+AGG + chr2.3:73821873-73821892 None:intergenic 35.0%
AATTGCAGTTTAGCCTGTAT+AGG - chr2.3:73821211-73821230 MS.gene002204:intron 35.0%
AATTGTACTCTCTGCATTCT+AGG - chr2.3:73822421-73822440 MS.gene002204:intron 35.0%
ACATTGAATTTGAGCTCCTT+TGG - chr2.3:73820294-73820313 MS.gene002204:intron 35.0%
ACTACTCTTGAAAGCTCATA+AGG + chr2.3:73820403-73820422 None:intergenic 35.0%
ACTGAAGCATAGTAACCTTA+TGG + chr2.3:73821454-73821473 None:intergenic 35.0%
AGAGTACAGTAGATAACTGT+TGG + chr2.3:73821828-73821847 None:intergenic 35.0%
ATTCTCTATTAGGGTTGAAC+TGG - chr2.3:73819582-73819601 MS.gene002204:intron 35.0%
ATTGCAGTTTAGCCTGTATA+GGG - chr2.3:73821212-73821231 MS.gene002204:intron 35.0%
CAAGTTTATGATGAACCATC+TGG - chr2.3:73820042-73820061 MS.gene002204:intron 35.0%
CAGAAGGAATGATAAATCGA+AGG - chr2.3:73822478-73822497 MS.gene002204:intron 35.0%
GAAAAATGCTGCAAAGTTTG+GGG - chr2.3:73820853-73820872 MS.gene002204:intron 35.0%
GAAAAGCCTCCAAAACATAA+AGG - chr2.3:73822072-73822091 MS.gene002204:CDS 35.0%
GACCTGTTTGCCAAAAATAA+AGG - chr2.3:73819888-73819907 MS.gene002204:CDS 35.0%
GCAAAACTGTTAACAGACTA+AGG + chr2.3:73821378-73821397 None:intergenic 35.0%
GGTGAAGCTATCATAAATTG+CGG - chr2.3:73821233-73821252 MS.gene002204:intron 35.0%
GTAACGATTACAGTGGAATT+GGG - chr2.3:73821873-73821892 MS.gene002204:CDS 35.0%
GTAGGTTTAGCCTCAATAAT+AGG + chr2.3:73820120-73820139 None:intergenic 35.0%
GTTACTATGCTTCAGTGATT+TGG - chr2.3:73821458-73821477 MS.gene002204:intron 35.0%
GTTATGCAGGCATTATTAAG+CGG - chr2.3:73820007-73820026 MS.gene002204:CDS 35.0%
GTTCAACAGAAAACAATGCA+TGG + chr2.3:73821108-73821127 None:intergenic 35.0%
TGGATCTTTAAACATGCCAA+AGG + chr2.3:73820313-73820332 None:intergenic 35.0%
TGTAACGATTACAGTGGAAT+TGG - chr2.3:73821872-73821891 MS.gene002204:CDS 35.0%
! ACTTCTGAACTTTGTTATGC+AGG - chr2.3:73819994-73820013 MS.gene002204:CDS 35.0%
! GGGTACATACATGTTTTTCT+CGG + chr2.3:73819735-73819754 None:intergenic 35.0%
! GGTACATACATGTTTTTCTC+GGG + chr2.3:73819734-73819753 None:intergenic 35.0%
! GTACATACATGTTTTTCTCG+GGG + chr2.3:73819733-73819752 None:intergenic 35.0%
! TATAATGTTTTCAGCTGCCA+AGG - chr2.3:73819844-73819863 MS.gene002204:intron 35.0%
! TTCTTGGCACCCTTTTTAAA+AGG + chr2.3:73822542-73822561 None:intergenic 35.0%
! TTTAACTTTGGATACTTGCG+AGG - chr2.3:73820224-73820243 MS.gene002204:intron 35.0%
!! GTGAAGGAGTGTTTACAAAA+AGG - chr2.3:73819604-73819623 MS.gene002204:intron 35.0%
!! TTTAAAAAGGGTGCCAAGAA+AGG - chr2.3:73822542-73822561 MS.gene002204:CDS 35.0%
AAACGTTTGGTTATCGCTGT+TGG - chr2.3:73820176-73820195 MS.gene002204:intron 40.0%
AAAGTCCTTGGTCTGTTCAA+AGG - chr2.3:73821600-73821619 MS.gene002204:intron 40.0%
AACGTTTGGTTATCGCTGTT+GGG - chr2.3:73820177-73820196 MS.gene002204:intron 40.0%
ACATACCTGGATTGTTGAGA+AGG + chr2.3:73819484-73819503 None:intergenic 40.0%
ACCACAAAAGAAGGTTACCA+AGG - chr2.3:73821972-73821991 MS.gene002204:intron 40.0%
ACCTTCAACATCTTGAGTAG+AGG + chr2.3:73819674-73819693 None:intergenic 40.0%
AGGCATTATTAAGCGGAACA+AGG - chr2.3:73820014-73820033 MS.gene002204:CDS 40.0%
ATGATAGCTTCACCCTATAC+AGG + chr2.3:73821227-73821246 None:intergenic 40.0%
ATGCATGGATATGTCAAGGT+AGG + chr2.3:73821093-73821112 None:intergenic 40.0%
CAAAACCTTTGAACAGACCA+AGG + chr2.3:73821608-73821627 None:intergenic 40.0%
CAGGCTAAACTGCAATTAAG+TGG + chr2.3:73821208-73821227 None:intergenic 40.0%
CATACCTGGATTGTTGAGAA+GGG + chr2.3:73819483-73819502 None:intergenic 40.0%
CCTTCAACATCTTGAGTAGA+GGG + chr2.3:73819673-73819692 None:intergenic 40.0%
GACGCGTAGTTACTCATAAT+TGG + chr2.3:73821652-73821671 None:intergenic 40.0%
GCCAAAACCTCCTACTAAAT+GGG - chr2.3:73819866-73819885 MS.gene002204:intron 40.0%
GTATGAATGATGAGAGTCGA+AGG + chr2.3:73819461-73819480 None:intergenic 40.0%
TACACCTGTAACGATTACAG+TGG - chr2.3:73821866-73821885 MS.gene002204:CDS 40.0%
TACACTGCCTAATTCATCCT+TGG + chr2.3:73821992-73822011 None:intergenic 40.0%
TATTAGGGTTGAACTGGTGA+AGG - chr2.3:73819588-73819607 MS.gene002204:intron 40.0%
TCAGTCAGGACTTCAAAACT+TGG - chr2.3:73820439-73820458 MS.gene002204:intron 40.0%
TGAACAATGCGAAAAGTCCT+TGG - chr2.3:73821588-73821607 MS.gene002204:intron 40.0%
TGAAGAAGGAGAAAAGCAGA+AGG - chr2.3:73822462-73822481 MS.gene002204:intron 40.0%
TGCATGGATATGTCAAGGTA+GGG + chr2.3:73821092-73821111 None:intergenic 40.0%
TGGAATTACTTACCATCGGT+AGG + chr2.3:73820138-73820157 None:intergenic 40.0%
TGTTATAGGCAAAGATGTCG+CGG + chr2.3:73821941-73821960 None:intergenic 40.0%
! AACCTTCTTTTGTGGTGAGT+GGG + chr2.3:73821968-73821987 None:intergenic 40.0%
! AATTTGTTCGAGGTTGACCT+CGG - chr2.3:73819424-73819443 MS.gene002204:CDS 40.0%
! ACATTTTACAGATCCAGACG+AGG - chr2.3:73820757-73820776 MS.gene002204:intron 40.0%
! ATGTTTTTCTCGGGGTAATC+TGG + chr2.3:73819725-73819744 None:intergenic 40.0%
! GCTTTTCTCCTTCTTCACAT+TGG + chr2.3:73822459-73822478 None:intergenic 40.0%
! TAACCTTCTTTTGTGGTGAG+TGG + chr2.3:73821969-73821988 None:intergenic 40.0%
! TCCCATTTAGTAGGAGGTTT+TGG + chr2.3:73819870-73819889 None:intergenic 40.0%
!! ATGTTGTCTGATTTGGGCTT+TGG - chr2.3:73819939-73819958 MS.gene002204:CDS 40.0%
!! GGACGATCTGATGCTTTTTA+TGG + chr2.3:73820352-73820371 None:intergenic 40.0%
!! TCCTTGGTAACCTTCTTTTG+TGG + chr2.3:73821976-73821995 None:intergenic 40.0%
!! TCTTTTCATCTAGTTCCTGC+CGG - chr2.3:73822213-73822232 MS.gene002204:intron 40.0%
!!! AGTTTTGAAGTCCTGACTGA+TGG + chr2.3:73820439-73820458 None:intergenic 40.0%
!!! GTTTTGAAGTCCTGACTGAT+GGG + chr2.3:73820438-73820457 None:intergenic 40.0%
AACAGGTCCCATTTAGTAGG+AGG + chr2.3:73819876-73819895 None:intergenic 45.0%
AACCCACTCACCACAAAAGA+AGG - chr2.3:73821963-73821982 MS.gene002204:intron 45.0%
ACGTTTGGTTATCGCTGTTG+GGG - chr2.3:73820178-73820197 MS.gene002204:intron 45.0%
ATACATCATCTGCTCGTGCT+TGG - chr2.3:73820964-73820983 MS.gene002204:intron 45.0%
ATATCCATGTCTGCGTTTCC+AGG + chr2.3:73820070-73820089 None:intergenic 45.0%
ATTGAGGCTAAACCTACCGA+TGG - chr2.3:73820123-73820142 MS.gene002204:intron 45.0%
CACAGTGACCAATGTGAAGA+AGG - chr2.3:73822448-73822467 MS.gene002204:intron 45.0%
CACGAGCAGATGATGTATAG+TGG + chr2.3:73820962-73820981 None:intergenic 45.0%
CATACCCTTCTCAACAATCC+AGG - chr2.3:73819476-73819495 MS.gene002204:CDS 45.0%
CCATGATTTACCCATCAGTC+AGG - chr2.3:73820425-73820444 MS.gene002204:intron 45.0%
CCCTCTACTCAAGATGTTGA+AGG - chr2.3:73819670-73819689 MS.gene002204:CDS 45.0%
GATGAATTAGGCAGTGTAGC+AGG - chr2.3:73821994-73822013 MS.gene002204:intron 45.0%
GCAAACAGGTCCCATTTAGT+AGG + chr2.3:73819879-73819898 None:intergenic 45.0%
GCGACATCTTTGCCTATAAC+AGG - chr2.3:73821940-73821959 MS.gene002204:CDS 45.0%
GGAGTTTGCACATAGTTCAG+AGG + chr2.3:73821357-73821376 None:intergenic 45.0%
GGCCAAAACCTCCTACTAAA+TGG - chr2.3:73819865-73819884 MS.gene002204:intron 45.0%
GGTTGACCTCGGTAATCTAA+TGG - chr2.3:73819435-73819454 MS.gene002204:CDS 45.0%
GTTGGGGACAACTAGGAAAT+AGG - chr2.3:73820194-73820213 MS.gene002204:intron 45.0%
! AGAAAGGAGGTGTACATACC+TGG + chr2.3:73819497-73819516 None:intergenic 45.0%
! ATGATGAACCATCTGGAACC+TGG - chr2.3:73820049-73820068 MS.gene002204:intron 45.0%
! CAAAGTTTGGGGCTTTACCT+AGG - chr2.3:73820864-73820883 MS.gene002204:intron 45.0%
! CCTGACTGATGGGTAAATCA+TGG + chr2.3:73820428-73820447 None:intergenic 45.0%
! GGCTGCTAAGAATTTGTTCG+AGG - chr2.3:73819414-73819433 MS.gene002204:CDS 45.0%
! TTTTTCTCGGGGTAATCTGG+TGG + chr2.3:73819722-73819741 None:intergenic 45.0%
!! TTAGTAGGAGGTTTTGGCCT+TGG + chr2.3:73819864-73819883 None:intergenic 45.0%
!!! GCTTTGAGGTTTTCGTTGCA+TGG - chr2.3:73820915-73820934 MS.gene002204:intron 45.0%
!!! TGCTTTTGGGTTGCCTTTCT+TGG + chr2.3:73822558-73822577 None:intergenic 45.0%
!! AAAAAATTGAAAATTATTTA+TGG + chr2.3:73821565-73821584 None:intergenic 5.0%
AAACTTCCCACCACTAGCTG+TGG + chr2.3:73822034-73822053 None:intergenic 50.0%
ACCATGCAGCCATGTTCAGT+TGG - chr2.3:73821915-73821934 MS.gene002204:CDS 50.0%
AGGAACAGGGGTAGGATCAA+AGG - chr2.3:73822243-73822262 MS.gene002204:CDS 50.0%
AGGGGTAGGATCAAAGGAGA+GGG - chr2.3:73822249-73822268 MS.gene002204:CDS 50.0%
CGAAGGCCATTAGATTACCG+AGG + chr2.3:73819444-73819463 None:intergenic 50.0%
TATCGCTGTTGGGGACAACT+AGG - chr2.3:73820187-73820206 MS.gene002204:intron 50.0%
TTGGCAAAAGGATCCTCGTC+TGG + chr2.3:73820773-73820792 None:intergenic 50.0%
! GGTGAGTGGGTTCCTGTTAT+AGG + chr2.3:73821955-73821974 None:intergenic 50.0%
!!! TGTTTTGGAGGCTTTTCGCC+TGG + chr2.3:73822069-73822088 None:intergenic 50.0%
ACCACTAGCTGTGGCAGTTG+AGG + chr2.3:73822025-73822044 None:intergenic 55.0%
ACCCCTGTTCCTTCTGCTAC+CGG + chr2.3:73822235-73822254 None:intergenic 55.0%
ATGTCGCGGCCAACTGAACA+TGG + chr2.3:73821927-73821946 None:intergenic 55.0%
CAACTGCCACAGCTAGTGGT+GGG - chr2.3:73822025-73822044 MS.gene002204:intron 55.0%
CAGGGGTAGGATCAAAGGAG+AGG - chr2.3:73822248-73822267 MS.gene002204:CDS 55.0%
CTCGGGGTAATCTGGTGGTT+GGG + chr2.3:73819717-73819736 None:intergenic 55.0%
CTGCGTTTCCAGGTTCCAGA+TGG + chr2.3:73820060-73820079 None:intergenic 55.0%
GCCAACTGAACATGGCTGCA+TGG + chr2.3:73821919-73821938 None:intergenic 55.0%
GCGCTCGAAAGGAAGAAAGG+AGG + chr2.3:73819510-73819529 None:intergenic 55.0%
GGAACCTGGAAACGCAGACA+TGG - chr2.3:73820063-73820082 MS.gene002204:intron 55.0%
GTAGCAGAAGGAACAGGGGT+AGG - chr2.3:73822235-73822254 MS.gene002204:intron 55.0%
TAGTTCCTGCCGGTAGCAGA+AGG - chr2.3:73822223-73822242 MS.gene002204:intron 55.0%
TCAACTGCCACAGCTAGTGG+TGG - chr2.3:73822024-73822043 MS.gene002204:intron 55.0%
TCGGGGTAATCTGGTGGTTG+GGG + chr2.3:73819716-73819735 None:intergenic 55.0%
TCTCGGGGTAATCTGGTGGT+TGG + chr2.3:73819718-73819737 None:intergenic 55.0%
TGCCGGTAGCAGAAGGAACA+GGG - chr2.3:73822230-73822249 MS.gene002204:intron 55.0%
TGGGGCAGGCAATTGAACGA+GGG + chr2.3:73819698-73819717 None:intergenic 55.0%
TTGGGGCAGGCAATTGAACG+AGG + chr2.3:73819699-73819718 None:intergenic 55.0%
CTGCCGGTAGCAGAAGGAAC+AGG - chr2.3:73822229-73822248 MS.gene002204:intron 60.0%
CTGTTCCTTCTGCTACCGGC+AGG + chr2.3:73822231-73822250 None:intergenic 60.0%
GCCGGTAGCAGAAGGAACAG+GGG - chr2.3:73822231-73822250 MS.gene002204:intron 60.0%
GCCTCAACTGCCACAGCTAG+TGG - chr2.3:73822021-73822040 MS.gene002204:intron 60.0%
GCGGCGCTCGAAAGGAAGAA+AGG + chr2.3:73819513-73819532 None:intergenic 60.0%
GGGGCAGGCAATTGAACGAG+GGG + chr2.3:73819697-73819716 None:intergenic 60.0%
GGTAATCTGGTGGTTGGGGC+AGG + chr2.3:73819712-73819731 None:intergenic 60.0%
TTGAAGTGGCGGCGCTCGAA+AGG + chr2.3:73819521-73819540 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 73819397 73822583 73819397 ID=MS.gene002204
chr2.3 mRNA 73819397 73822583 73819397 ID=MS.gene002204.t1;Parent=MS.gene002204
chr2.3 exon 73822483 73822583 73822483 ID=MS.gene002204.t1.exon1;Parent=MS.gene002204.t1
chr2.3 CDS 73822483 73822583 73822483 ID=cds.MS.gene002204.t1;Parent=MS.gene002204.t1
chr2.3 exon 73822236 73822386 73822236 ID=MS.gene002204.t1.exon2;Parent=MS.gene002204.t1
chr2.3 CDS 73822236 73822386 73822236 ID=cds.MS.gene002204.t1;Parent=MS.gene002204.t1
chr2.3 exon 73822071 73822122 73822071 ID=MS.gene002204.t1.exon3;Parent=MS.gene002204.t1
chr2.3 CDS 73822071 73822122 73822071 ID=cds.MS.gene002204.t1;Parent=MS.gene002204.t1
chr2.3 exon 73821836 73821964 73821836 ID=MS.gene002204.t1.exon4;Parent=MS.gene002204.t1
chr2.3 CDS 73821836 73821964 73821836 ID=cds.MS.gene002204.t1;Parent=MS.gene002204.t1
chr2.3 exon 73821095 73821212 73821095 ID=MS.gene002204.t1.exon5;Parent=MS.gene002204.t1
chr2.3 CDS 73821095 73821212 73821095 ID=cds.MS.gene002204.t1;Parent=MS.gene002204.t1
chr2.3 exon 73819873 73820056 73819873 ID=MS.gene002204.t1.exon6;Parent=MS.gene002204.t1
chr2.3 CDS 73819873 73820056 73819873 ID=cds.MS.gene002204.t1;Parent=MS.gene002204.t1
chr2.3 exon 73819641 73819754 73819641 ID=MS.gene002204.t1.exon7;Parent=MS.gene002204.t1
chr2.3 CDS 73819641 73819754 73819641 ID=cds.MS.gene002204.t1;Parent=MS.gene002204.t1
chr2.3 exon 73819397 73819537 73819397 ID=MS.gene002204.t1.exon8;Parent=MS.gene002204.t1
chr2.3 CDS 73819397 73819537 73819397 ID=cds.MS.gene002204.t1;Parent=MS.gene002204.t1
Gene Sequence

>MS.gene002204

ATGGAGATTGAGATGGAGGCTGCTAAGAATTTGTTCGAGGTTGACCTCGGTAATCTAATGGCCTTCGACTCTCATCATTCATACCCTTCTCAACAATCCAGGTATGTACACCTCCTTTCTTCCTTTCGAGCGCCGCCACTTCAATTTGATTTTTCAATCTTTGATACATGTTCTGTTATTAATCTATTCTCTATTAGGGTTGAACTGGTGAAGGAGTGTTTACAAAAAGGCACTGAGTTAGTTCAAGCTATCGCTGATTCTCTCTTTATTTTACCCTCTACTCAAGATGTTGAAGGTCCCCTCGTTCAATTGCCTGCCCCAACCACCAGATTACCCCGAGAAAAACATGTATGTACCCTTCTTATTGAAGAAGAAATTTTATTTATTTATTTATAATATAAACATTTCTTTATTGATTCGTGTGTTTATCATTTGCTCATAAGGTTTTATAATGTTTTCAGCTGCCAAGGCCAAAACCTCCTACTAAATGGGACCTGTTTGCCAAAAATAAAGGTTAGTTTGTCCTTTTGTTGATGTTGTTTATGTTGTCTGATTTGGGCTTTGGATTAGACTTTTTTTTTTTTTAACCATTTTATTACTTCTGAACTTTGTTATGCAGGCATTATTAAGCGGAACAAGGACAAACAAGTTTATGATGAACCATCTGGAACCTGGAAACGCAGACATGGATATGATCGTGCTAACGATGAAGAAGCTATTCCTATTATTGAGGCTAAACCTACCGATGGTAAGTAATTCCACATTCAATCCCTATTATCAAACGTTTGGTTATCGCTGTTGGGGACAACTAGGAAATAGGTTTCAATTTTAACTTTGGATACTTGCGAGGCAAACCTATTTAACATGTGTGTACTAAAACAGTACAAATTAGAATAGACATTGAATTTGAGCTCCTTTGGCATGTTTAAAGATCCAACATCTAAATTAGGAACCATAAAAAGCATCAGATCGTCCACAATGTTTAATCATAGCATGATAATCACCTTATGAGCTTTCAAGAGTAGTATCCATGATTTACCCATCAGTCAGGACTTCAAAACTTGGAATAAGTTACTTTTGTTATTATTCTTTTTGGGTAATTTGTCAATTTTGTATTTGATTCTGCATTTTAGAGATTATCATTCTTGTGCGTGATAATCTAGATCAAGTACTCTGATTGAAGTTTACTTGTATTGAATTCAAACTATTTATAAATGTTAAGGGAACCTCTTGTTCTATTCTTACGATTTTTCAGAATTATTTTAACATTAAATGTTTTCATGTGCGCATACAAAATTCATACTTGAACTTTGCATTTTTACAGTTTTCTATGTAGTGCTATATCGTTAATGGTATTGTTACATTTTACAGATCCAGACGAGGATCCTTTTGCCAAGAGAAAAGAAAACAAAAGGGGAAGAGTTGATAAAAATGAGAAAAATCGGATACAGAATTTGAAAAATGCTGCAAAGTTTGGGGCTTTACCTAGGTAACTCTCTTAACCATTTCCAATAACTAGCTTTGAGGTTTTCGTTGCATGGTTGCATTCTATTTATTTCTATCCACTATACATCATCTGCTCGTGCTTGGTGTAATTTATCTGTTGCAATCATTGTGTTTACTGTTTTACAAGTTTCTTGGAGAGTTTTGATCCATTGCTATTTGTATACTTACATCTGTATTTGGTCTTTTCCCTACCTTGACATATCCATGCATTGTTTTCTGTTGAACACTTTATCTGCGCTAGTTGTATCTGCAATGTTATTAATAATGAGTTTCTAGGAGCTATCAATTACTTTATACAGGGTCCACTTAATTGCAGTTTAGCCTGTATAGGGTGAAGCTATCATAAATTGCGGTTGAACATACATTAAGCTTATCCAATCTAGATTTGTAAATAATCACATGATTTTGTTTCTTTTTGTAATAATTCTCCATAAAGAATTTACAATTTTTTCCTCTGAACTATGTGCAAACTCCTTAGTCTGTTAACAGTTTTGCAGAAATACTAGTTATGAGTCTCTTTACGTCTACTTTAAACATTTTAACTTTATCCATAAGGTTACTATGCTTCAGTGATTTGGAAGTGCGTAAATATGTTAATTAGTTCCTTTGTTAATTAGATTTGCAAATAATCACATGATTGTTTTTTTTATAAGAATTCTCCATAAATAATTTTCAATTTTTTCTCTGAACAATGCGAAAAGTCCTTGGTCTGTTCAAAGGTTTTGTATATATCAATGCTAGAAATACCAATTATGAGTAACTACGCGTCCACTTCACATTTTAACTTTATCCATAAGGTTTCTATGCTTCATTAATTCGTAAGTGCATAACTATGTTAATTAGATCCTTTGTTGTCTCATATTATGCTGCAAACAGTCACAGAAGAAGTTGAAAAGAACTGTGTTAATCGTCTAAATAACTACCAACAGTTATCTACTGTACTCTGATTTCTTTGCATTCTTTTACACCTGTAACGATTACAGTGGAATTGGGCTCTAATTCTAAACAATTTACCATGCAGCCATGTTCAGTTGGCCGCGACATCTTTGCCTATAACAGGAACCCACTCACCACAAAAGAAGGTTACCAAGGATGAATTAGGCAGTGTAGCAGGTTTTGCCTCAACTGCCACAGCTAGTGGTGGGAAGTTTGACAAAAAATTGCCAGGCGAAAAGCCTCCAAAACATAAAGGAAAGAATCGAAAGGTGTGTACTGTACTCTTACAGAAATCAGTTTATCTTAACCTTGTAAACAATTATTTGTCGAAACAGTTAACTTTCATTTAATTGACTGATTAGCTTCCTTTGTTATCTTTTCATCTAGTTCCTGCCGGTAGCAGAAGGAACAGGGGTAGGATCAAAGGAGAGGGAGCAAACTGAAAATATATTGAACAAGATCATGTCCAAGAATAATCATGATATACTCAATGTTAACAAGGTACATTCAAGTTATTAAGTAACTAGTGACATTGATTTCAATTGTTATAAAGTTTTACTAGCTGTTATTTTTTCTTTTCATAATTGTACTCTCTGCATTCTAGGCTGTCACAGTGACCAATGTGAAGAAGGAGAAAAGCAGAAGGAATGATAAATCGAAGGCTTCAGCAACTAACAGCAAATTGAAAACTCAGAAGAAGCCTTTTAAAAAGGGTGCCAAGAAAGGCAACCCAAAAGCACAGTAA
Protein sequence

>MS.gene002204.t1

MEIEMEAAKNLFEVDLGNLMAFDSHHSYPSQQSRVELVKECLQKGTELVQAIADSLFILPSTQDVEGPLVQLPAPTTRLPREKHLPRPKPPTKWDLFAKNKGIIKRNKDKQVYDEPSGTWKRRHGYDRANDEEAIPIIEAKPTDDPDEDPFAKRKENKRGRVDKNEKNRIQNLKNAAKFGALPSHVQLAATSLPITGTHSPQKKVTKDELGSVAGFASTATASGGKFDKKLPGEKPPKHKGKNRKFLPVAEGTGVGSKEREQTENILNKIMSKNNHDILNVNKAVTVTNVKKEKSRRNDKSKASATNSKLKTQKKPFKKGAKKGNPKAQ