AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene031030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031030.t1 MTR_6g012080 97.736 265 6 0 1 265 1 265 0.0 527
MS.gene031030.t1 MTR_6g012110 96.226 265 10 0 1 265 1 265 0.0 523
MS.gene031030.t1 MTR_6g011890 95.094 265 13 0 1 265 1 265 0.0 508
MS.gene031030.t1 MTR_6g011880 93.585 265 17 0 1 265 1 265 1.79e-180 496
MS.gene031030.t1 MTR_6g011870 93.585 265 17 0 1 265 1 265 4.22e-180 496
MS.gene031030.t1 MTR_4g094605 90.977 266 23 1 1 265 1 266 1.08e-178 492
MS.gene031030.t1 MTR_5g097280 76.119 268 58 3 1 265 1 265 3.11e-149 417
MS.gene031030.t1 MTR_6g043600 78.491 265 21 3 1 265 1 229 3.68e-139 390
MS.gene031030.t1 MTR_2g081090 77.232 224 49 2 43 264 13 236 3.21e-120 343
MS.gene031030.t1 MTR_2g081090 78.899 218 44 2 49 264 46 263 4.97e-120 343
MS.gene031030.t1 MTR_6g060175 52.607 211 91 4 47 253 69 274 3.72e-65 205
MS.gene031030.t1 MTR_1g026550 51.376 218 95 6 47 253 105 322 4.90e-62 198
MS.gene031030.t1 MTR_6g060175 50.711 211 85 5 47 253 69 264 1.36e-58 188
MS.gene031030.t1 MTR_5g098785 35.294 289 131 12 1 253 1 269 1.13e-36 131
MS.gene031030.t1 MTR_5g098780 35.842 279 141 11 1 253 1 267 1.62e-36 130
MS.gene031030.t1 MTR_6g033320 43.005 193 90 6 66 253 56 233 3.29e-36 129
MS.gene031030.t1 MTR_8g023790 34.884 258 122 12 9 249 28 256 2.43e-35 127
MS.gene031030.t1 MTR_3g101670 37.438 203 95 6 64 249 66 253 2.75e-33 122
MS.gene031030.t1 MTR_2g042720 35.000 240 120 9 38 260 46 266 2.02e-31 117
MS.gene031030.t1 MTR_3g435460 35.025 197 104 5 65 252 62 243 8.43e-30 112
MS.gene031030.t1 MTR_1g026550 47.619 126 62 3 47 168 105 230 8.47e-29 109
MS.gene031030.t1 MTR_4g015570 36.325 234 91 9 64 253 62 281 8.40e-28 108
MS.gene031030.t1 MTR_3g435460 33.862 189 101 5 73 252 9 182 4.45e-26 101
MS.gene031030.t1 MTR_3g070340 44.516 155 65 8 93 243 137 274 5.35e-21 90.1
MS.gene031030.t1 MTR_5g098770 54.054 74 33 1 181 253 13 86 5.44e-21 85.1
MS.gene031030.t1 MTR_2g008610 32.367 207 90 7 66 242 73 259 1.98e-17 79.7
MS.gene031030.t1 MTR_2g436960 49.315 73 30 2 180 252 27 92 1.31e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031030.t1 AT1G29930 87.640 267 31 2 1 265 1 267 4.04e-171 473
MS.gene031030.t1 AT1G29920 87.266 267 32 2 1 265 1 267 3.28e-170 471
MS.gene031030.t1 AT1G29910 87.266 267 32 2 1 265 1 267 3.28e-170 471
MS.gene031030.t1 AT2G34430 87.640 267 30 3 1 265 1 266 1.14e-168 467
MS.gene031030.t1 AT2G34420 87.640 267 29 3 1 265 1 265 2.06e-168 466
MS.gene031030.t1 AT3G27690 78.229 271 48 4 2 265 32 298 2.27e-152 427
MS.gene031030.t1 AT3G27690 78.676 272 45 5 1 265 1 266 7.38e-152 424
MS.gene031030.t1 AT2G05070 77.985 268 53 3 1 265 1 265 5.40e-151 422
MS.gene031030.t1 AT2G05100 77.491 271 49 5 1 265 1 265 1.09e-149 419
MS.gene031030.t1 AT2G05100 76.955 243 44 5 1 237 1 237 3.76e-128 366
MS.gene031030.t1 AT5G54270 68.539 267 74 6 1 264 5 264 1.01e-119 343
MS.gene031030.t1 AT1G76570 43.295 261 137 6 3 253 61 320 4.66e-63 201
MS.gene031030.t1 AT4G10340 51.185 211 94 4 47 253 60 265 6.39e-61 194
MS.gene031030.t1 AT3G54890 44.041 193 88 6 66 253 55 232 1.72e-37 132
MS.gene031030.t1 AT1G61520 40.553 217 94 9 62 253 59 265 6.77e-37 132
MS.gene031030.t1 AT1G61520 40.553 217 94 9 62 253 59 265 6.77e-37 132
MS.gene031030.t1 AT1G45474 40.933 193 99 5 66 249 56 242 1.30e-35 128
MS.gene031030.t1 AT1G45474 40.933 193 99 5 66 249 56 242 1.30e-35 128
MS.gene031030.t1 AT3G61470 38.140 215 97 9 52 249 50 245 5.30e-35 126
MS.gene031030.t1 AT1G61520 39.130 207 91 9 73 254 15 211 1.60e-33 121
MS.gene031030.t1 AT3G47470 40.104 192 101 7 65 252 63 244 5.44e-31 115
MS.gene031030.t1 AT1G19150 35.021 237 118 8 41 260 52 269 1.40e-30 115
MS.gene031030.t1 AT3G08940 35.769 260 105 12 39 253 37 279 2.45e-28 109
MS.gene031030.t1 AT5G01530 37.339 233 88 10 65 253 64 282 2.31e-27 107
MS.gene031030.t1 AT3G54890 38.220 191 68 6 66 253 55 198 8.87e-24 95.9
MS.gene031030.t1 AT3G54890 40.764 157 74 5 66 218 55 196 9.95e-24 95.9
MS.gene031030.t1 AT2G40100 42.208 154 69 7 93 243 136 272 1.10e-22 94.4
MS.gene031030.t1 AT1G15820 33.816 207 87 7 66 242 70 256 1.71e-18 82.8
MS.gene031030.t1 AT5G28450 53.968 63 27 2 189 249 99 161 3.88e-13 66.2
MS.gene031030.t1 AT3G54890 42.353 85 41 2 66 149 55 132 3.06e-11 60.8

Find 108 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAAAGCATCCTTGCTATT+TGG 0.098078 6.2:+6266695 MS.gene031030:CDS
GGCTTGCCAAGTTATCTTAA+TGG 0.266805 6.2:+6266717 MS.gene031030:CDS
TTAGCTATGTTCTCTATGTT+TGG 0.272123 6.2:+6266889 MS.gene031030:CDS
GTTCTCTAGAGGTCCCTTTC+CGG 0.294770 6.2:-6266935 None:intergenic
CTTTCTTCTTCAACAATAGT+TGG 0.308459 6.2:+6266256 MS.gene031030:CDS
ATGGGCTATGTTGGGTGCCT+TGG 0.311551 6.2:+6266543 MS.gene031030:CDS
ACAAAGCATCCTTGCTATTT+GGG 0.328738 6.2:+6266696 MS.gene031030:CDS
TCCAGAAGGAACGTTCTTCT+TGG 0.344142 6.2:-6266350 None:intergenic
TCGAGGTCATCCACAGTAGA+TGG 0.351194 6.2:+6266524 MS.gene031030:CDS
TCTCGCAATGGTGTCAAATT+CGG 0.351371 6.2:+6266589 MS.gene031030:CDS
GACTATGGTTGGGACACTGC+TGG 0.354408 6.2:+6266460 MS.gene031030:CDS
AAGTACTTGGGCCCATTCTC+TGG 0.361014 6.2:+6266400 MS.gene031030:CDS
GGTGAATTTCCTGGTGACTA+TGG 0.363361 6.2:+6266445 MS.gene031030:CDS
TACCTCACTGGTGAATTTCC+TGG 0.369528 6.2:+6266436 MS.gene031030:CDS
TTCGTTCAGGCCATTGTAAC+CGG 0.370708 6.2:+6266916 MS.gene031030:CDS
GCTTGCCAAGTTATCTTAAT+GGG 0.373943 6.2:+6266718 MS.gene031030:CDS
CTTTGTGCATGGACTAGGCT+TGG 0.381822 6.2:-6266679 None:intergenic
TGGGCTATGTTGGGTGCCTT+GGG 0.394640 6.2:+6266544 MS.gene031030:CDS
ATTCTTCCCATGCCAAGGTC+TGG 0.397640 6.2:-6266307 None:intergenic
ACCAAGAAGAACGTTCCTTC+TGG 0.405063 6.2:+6266349 MS.gene031030:CDS
CCCAAGTACTTGACACGGTC+TGG 0.410224 6.2:-6266388 None:intergenic
GCCCATGCGTTGTTGTTGAC+GGG 0.412241 6.2:-6266979 None:intergenic
TCCAGACCGTGTCAAGTACT+TGG 0.414229 6.2:+6266387 MS.gene031030:CDS
TGTTGACGGGGTCAGCAATA+TGG 0.416907 6.2:-6266966 None:intergenic
GGCCCATGCGTTGTTGTTGA+CGG 0.418462 6.2:-6266980 None:intergenic
GGATGCTTTGTGCATGGACT+AGG 0.419278 6.2:-6266684 None:intergenic
GTTGAGGGTTACCGTATTGC+TGG 0.430208 6.2:+6266745 MS.gene031030:CDS
CGTATTGCTGGTGGACCTCT+TGG 0.432323 6.2:+6266757 MS.gene031030:CDS
TGAAGGAGGACTTGACTACT+TGG 0.434727 6.2:+6266651 MS.gene031030:CDS
CAGCTCCCATTAAGATAACT+TGG 0.434949 6.2:-6266723 None:intergenic
TTTCTTCTTCAACAATAGTT+GGG 0.442849 6.2:+6266257 MS.gene031030:CDS
TTTGTGCATGGACTAGGCTT+GGG 0.444324 6.2:-6266678 None:intergenic
CACGGTCTGGACCGTACCAC+TGG 0.447035 6.2:-6266375 None:intergenic
CTTTCCGGGGACAAAGTTTG+TGG 0.447832 6.2:-6267007 None:intergenic
CACAGTAGATGGGCTATGTT+GGG 0.449424 6.2:+6266535 MS.gene031030:CDS
GGGTGGAAGCTTTGACCCAT+TGG 0.450353 6.2:+6266804 MS.gene031030:CDS
GGTGGAAGCTTTGACCCATT+GGG 0.457466 6.2:+6266805 MS.gene031030:CDS
CGGCGAGGCTGTGTGGTTCA+AGG 0.463771 6.2:+6266609 MS.gene031030:CDS
CCACAGTAGATGGGCTATGT+TGG 0.471821 6.2:+6266534 MS.gene031030:CDS
GATCATCAGCGAGGCCCAAT+GGG 0.474717 6.2:-6266819 None:intergenic
TGTGGATGACCTCGAGTTCA+CGG 0.476627 6.2:-6266516 None:intergenic
TATCTTAATGGGAGCTGTTG+AGG 0.477252 6.2:+6266729 MS.gene031030:CDS
TTCAACTCAGCAAAAGCCTC+TGG 0.479411 6.2:-6266841 None:intergenic
ATCTTAATGGGAGCTGTTGA+GGG 0.480343 6.2:+6266730 MS.gene031030:CDS
CAGGCCATTGTAACCGGAAA+GGG 0.483589 6.2:+6266922 MS.gene031030:CDS
AATTCACCAGTGAGGTAAGA+TGG 0.486152 6.2:-6266430 None:intergenic
ACTATGGTTGGGACACTGCT+GGG 0.487785 6.2:+6266461 MS.gene031030:CDS
ACCCCGTCAACAACAACGCA+TGG 0.492539 6.2:+6266977 MS.gene031030:CDS
GATGGAGCTTCACCAGAGAA+TGG 0.493907 6.2:-6266412 None:intergenic
CCATTGCGAGATAAGAGCTC+AGG 0.496373 6.2:-6266577 None:intergenic
TTCTTCAACAATAGTTGGGA+AGG 0.502694 6.2:+6266261 MS.gene031030:CDS
AATTTCCTGGTGACTATGGT+TGG 0.506431 6.2:+6266449 MS.gene031030:CDS
AGCTTCCACCCGGGTAGAGT+GGG 0.507050 6.2:-6266792 None:intergenic
ATGGAGCTTCACCAGAGAAT+GGG 0.513997 6.2:-6266411 None:intergenic
GAGGCTGTGTGGTTCAAGGC+AGG 0.515376 6.2:+6266613 MS.gene031030:CDS
AGAAGGAACGTTCTTCTTGG+TGG 0.518277 6.2:-6266347 None:intergenic
GGTAGTCGACCCACTCTACC+CGG 0.521175 6.2:+6266783 MS.gene031030:CDS
GGATCATCAGCGAGGCCCAA+TGG 0.522174 6.2:-6266820 None:intergenic
TTTGCCACAAACTTTGTCCC+CGG 0.531351 6.2:+6267003 MS.gene031030:CDS
TGGTGATTCTTCCCATGCCA+AGG 0.534305 6.2:-6266312 None:intergenic
AAGCTTCCACCCGGGTAGAG+TGG 0.534876 6.2:-6266793 None:intergenic
GGGGACAAAGTTTGTGGCAA+AGG 0.536377 6.2:-6267001 None:intergenic
TCTCCCTCTACTCCAGACCT+TGG 0.540217 6.2:+6266295 MS.gene031030:CDS
CATGCCAAGGTCTGGAGTAG+AGG 0.552117 6.2:-6266299 None:intergenic
CAAGAGGTCCACCAGCAATA+CGG 0.554867 6.2:-6266756 None:intergenic
GAAGCTCCATCTTACCTCAC+TGG 0.557671 6.2:+6266424 MS.gene031030:CDS
TGAAAGAACTCAAGAATGGT+AGG 0.559512 6.2:+6266866 MS.gene031030:CDS
CGAGGTCATCCACAGTAGAT+GGG 0.559618 6.2:+6266525 MS.gene031030:CDS
ATGCCAAGGTCTGGAGTAGA+GGG 0.562060 6.2:-6266298 None:intergenic
CCCATGCGTTGTTGTTGACG+GGG 0.565011 6.2:-6266978 None:intergenic
ATTTCCTGGTGACTATGGTT+GGG 0.565504 6.2:+6266450 MS.gene031030:CDS
AGGTCCCTTTCCGGTTACAA+TGG 0.574200 6.2:-6266926 None:intergenic
CCTGAGCTCTTATCTCGCAA+TGG 0.578069 6.2:+6266577 MS.gene031030:CDS
CCAGACCGTGTCAAGTACTT+GGG 0.581879 6.2:+6266388 MS.gene031030:CDS
AAGGTGAAAGAACTCAAGAA+TGG 0.584740 6.2:+6266862 MS.gene031030:CDS
TAGCAAGGATGCTTTGTGCA+TGG 0.585942 6.2:-6266690 None:intergenic
CTCTACTCCAGACCTTGGCA+TGG 0.586599 6.2:+6266300 MS.gene031030:CDS
TCAAATTCGGCGAGGCTGTG+TGG 0.588909 6.2:+6266602 MS.gene031030:CDS
TCTCAAATCTTTAGTGAAGG+AGG 0.596227 6.2:+6266637 MS.gene031030:CDS
AATGGGTCAAAGCTTCCACC+CGG 0.596844 6.2:-6266802 None:intergenic
CCCCGTCAACAACAACGCAT+GGG 0.596948 6.2:+6266978 MS.gene031030:CDS
CCTTCTGGAAGCCAGTGGTA+CGG 0.599326 6.2:+6266364 MS.gene031030:CDS
CTTGGCAAGCCCAAATAGCA+AGG 0.601875 6.2:-6266705 None:intergenic
TCAGGCCATTGTAACCGGAA+AGG 0.602000 6.2:+6266921 MS.gene031030:CDS
TCTACTCCAGACCTTGGCAT+GGG 0.609820 6.2:+6266301 MS.gene031030:CDS
TGCTGGTGGACCTCTTGGTG+AGG 0.612383 6.2:+6266762 MS.gene031030:CDS
GTGTCCCAACCATAGTCACC+AGG 0.616804 6.2:-6266454 None:intergenic
GAGGGTTACCGTATTGCTGG+TGG 0.619713 6.2:+6266748 MS.gene031030:CDS
GGGCCTCGCTGATGATCCAG+AGG 0.624243 6.2:+6266825 MS.gene031030:CDS
TACAATGGCTACATCAACAA+TGG 0.627588 6.2:+6266231 None:intergenic
CATTGCGAGATAAGAGCTCA+GGG 0.632574 6.2:-6266576 None:intergenic
GGATCTCAAATCTTTAGTGA+AGG 0.638048 6.2:+6266634 MS.gene031030:CDS
CCGTACCACTGGCTTCCAGA+AGG 0.639629 6.2:-6266364 None:intergenic
GGTCAGCAATATGGTCAGCA+AGG 0.646252 6.2:-6266957 None:intergenic
CCAACATAGCCCATCTACTG+TGG 0.651695 6.2:-6266534 None:intergenic
GAAGGAGGACTTGACTACTT+GGG 0.662695 6.2:+6266652 MS.gene031030:CDS
CTCAGGGAAGACACATCCCA+AGG 0.667407 6.2:-6266560 None:intergenic
TGGTCAGCAAGGTTCTCTAG+AGG 0.668903 6.2:-6266946 None:intergenic
GTAGTCGACCCACTCTACCC+GGG 0.676420 6.2:+6266784 MS.gene031030:CDS
GGGTCGACTACCTCACCAAG+AGG 0.687407 6.2:-6266772 None:intergenic
ATGGGTCAAAGCTTCCACCC+GGG 0.687648 6.2:-6266801 None:intergenic
ACGTTCCTTCTGGAAGCCAG+TGG 0.688327 6.2:+6266359 MS.gene031030:CDS
GTCGACCCACTCTACCCGGG+TGG 0.691664 6.2:+6266787 MS.gene031030:CDS
CAATGGTGTCAAATTCGGCG+AGG 0.704270 6.2:+6266594 MS.gene031030:CDS
ATGGGCCCAAGTACTTGACA+CGG 0.711188 6.2:-6266393 None:intergenic
CACCAGGAAATTCACCAGTG+AGG 0.714950 6.2:-6266438 None:intergenic
AAGCCTCTGGATCATCAGCG+AGG 0.746493 6.2:-6266828 None:intergenic
GCATGGGAAGAATCACCATG+AGG 0.752016 6.2:+6266317 MS.gene031030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TTTCTTCTTCAACAATAGTT+GGG + chr6.2:6266257-6266276 MS.gene031030:CDS 25.0%
CTTTCTTCTTCAACAATAGT+TGG + chr6.2:6266256-6266275 MS.gene031030:CDS 30.0%
TTAGCTATGTTCTCTATGTT+TGG + chr6.2:6266889-6266908 MS.gene031030:CDS 30.0%
! TATGTTTGGATTTTTCGTTC+AGG + chr6.2:6266903-6266922 MS.gene031030:CDS 30.0%
AAGGTGAAAGAACTCAAGAA+TGG + chr6.2:6266862-6266881 MS.gene031030:CDS 35.0%
GCTTGCCAAGTTATCTTAAT+GGG + chr6.2:6266718-6266737 MS.gene031030:CDS 35.0%
GGATCTCAAATCTTTAGTGA+AGG + chr6.2:6266634-6266653 MS.gene031030:CDS 35.0%
TCTCAAATCTTTAGTGAAGG+AGG + chr6.2:6266637-6266656 MS.gene031030:CDS 35.0%
TGAAAGAACTCAAGAATGGT+AGG + chr6.2:6266866-6266885 MS.gene031030:CDS 35.0%
TTCTTCAACAATAGTTGGGA+AGG + chr6.2:6266261-6266280 MS.gene031030:CDS 35.0%
!! ACAAAGCATCCTTGCTATTT+GGG + chr6.2:6266696-6266715 MS.gene031030:CDS 35.0%
AATTCACCAGTGAGGTAAGA+TGG - chr6.2:6266433-6266452 None:intergenic 40.0%
AATTTCCTGGTGACTATGGT+TGG + chr6.2:6266449-6266468 MS.gene031030:CDS 40.0%
ATCTTAATGGGAGCTGTTGA+GGG + chr6.2:6266730-6266749 MS.gene031030:CDS 40.0%
ATTTCCTGGTGACTATGGTT+GGG + chr6.2:6266450-6266469 MS.gene031030:CDS 40.0%
CAGCTCCCATTAAGATAACT+TGG - chr6.2:6266726-6266745 None:intergenic 40.0%
GGCTTGCCAAGTTATCTTAA+TGG + chr6.2:6266717-6266736 MS.gene031030:CDS 40.0%
TATCTTAATGGGAGCTGTTG+AGG + chr6.2:6266729-6266748 MS.gene031030:CDS 40.0%
! TCTCGCAATGGTGTCAAATT+CGG + chr6.2:6266589-6266608 MS.gene031030:CDS 40.0%
!! CACAAAGCATCCTTGCTATT+TGG + chr6.2:6266695-6266714 MS.gene031030:CDS 40.0%
!!! ACGGTTTTTGGCAAATGTCT+CGG - chr6.2:6266500-6266519 None:intergenic 40.0%
ACCAAGAAGAACGTTCCTTC+TGG + chr6.2:6266349-6266368 MS.gene031030:CDS 45.0%
AGAAGGAACGTTCTTCTTGG+TGG - chr6.2:6266350-6266369 None:intergenic 45.0%
ATGGAGCTTCACCAGAGAAT+GGG - chr6.2:6266414-6266433 None:intergenic 45.0%
CATTGCGAGATAAGAGCTCA+GGG - chr6.2:6266579-6266598 None:intergenic 45.0%
GAAGGAGGACTTGACTACTT+GGG + chr6.2:6266652-6266671 MS.gene031030:CDS 45.0%
GGTGAATTTCCTGGTGACTA+TGG + chr6.2:6266445-6266464 MS.gene031030:CDS 45.0%
TACCTCACTGGTGAATTTCC+TGG + chr6.2:6266436-6266455 MS.gene031030:CDS 45.0%
TAGCAAGGATGCTTTGTGCA+TGG - chr6.2:6266693-6266712 None:intergenic 45.0%
TCCAGAAGGAACGTTCTTCT+TGG - chr6.2:6266353-6266372 None:intergenic 45.0%
TGAAGGAGGACTTGACTACT+TGG + chr6.2:6266651-6266670 MS.gene031030:CDS 45.0%
TTCAACTCAGCAAAAGCCTC+TGG - chr6.2:6266844-6266863 None:intergenic 45.0%
TTCGTTCAGGCCATTGTAAC+CGG + chr6.2:6266916-6266935 MS.gene031030:CDS 45.0%
TTTGCCACAAACTTTGTCCC+CGG + chr6.2:6267003-6267022 MS.gene031030:CDS 45.0%
!! AGAGGCTTTTGCTGAGTTGA+AGG + chr6.2:6266843-6266862 MS.gene031030:CDS 45.0%
!! CACAGTAGATGGGCTATGTT+GGG + chr6.2:6266535-6266554 MS.gene031030:CDS 45.0%
!! CTTGGTGGTTGTTTTCCTCA+TGG - chr6.2:6266335-6266354 None:intergenic 45.0%
!! TTTGTGCATGGACTAGGCTT+GGG - chr6.2:6266681-6266700 None:intergenic 45.0%
!!! CGGTTTTTGGCAAATGTCTC+GGG - chr6.2:6266499-6266518 None:intergenic 45.0%
!!! GGTTTTTGGCAAATGTCTCG+GGG - chr6.2:6266498-6266517 None:intergenic 45.0%
AAGTACTTGGGCCCATTCTC+TGG + chr6.2:6266400-6266419 MS.gene031030:CDS 50.0%
AATGGGTCAAAGCTTCCACC+CGG - chr6.2:6266805-6266824 None:intergenic 50.0%
ACTATGGTTGGGACACTGCT+GGG + chr6.2:6266461-6266480 MS.gene031030:CDS 50.0%
AGGTCCCTTTCCGGTTACAA+TGG - chr6.2:6266929-6266948 None:intergenic 50.0%
ATGGGCCCAAGTACTTGACA+CGG - chr6.2:6266396-6266415 None:intergenic 50.0%
ATTCTTCCCATGCCAAGGTC+TGG - chr6.2:6266310-6266329 None:intergenic 50.0%
CAAGAGGTCCACCAGCAATA+CGG - chr6.2:6266759-6266778 None:intergenic 50.0%
CACCAGGAAATTCACCAGTG+AGG - chr6.2:6266441-6266460 None:intergenic 50.0%
CAGGCCATTGTAACCGGAAA+GGG + chr6.2:6266922-6266941 MS.gene031030:CDS 50.0%
CCAACATAGCCCATCTACTG+TGG - chr6.2:6266537-6266556 None:intergenic 50.0%
CCAGACCGTGTCAAGTACTT+GGG + chr6.2:6266388-6266407 MS.gene031030:CDS 50.0%
CCATTGCGAGATAAGAGCTC+AGG - chr6.2:6266580-6266599 None:intergenic 50.0%
CCTGAGCTCTTATCTCGCAA+TGG + chr6.2:6266577-6266596 MS.gene031030:CDS 50.0%
CGAGGTCATCCACAGTAGAT+GGG + chr6.2:6266525-6266544 MS.gene031030:CDS 50.0%
CTTGGCAAGCCCAAATAGCA+AGG - chr6.2:6266708-6266727 None:intergenic 50.0%
CTTTCCGGGGACAAAGTTTG+TGG - chr6.2:6267010-6267029 None:intergenic 50.0%
GAAGCTCCATCTTACCTCAC+TGG + chr6.2:6266424-6266443 MS.gene031030:CDS 50.0%
GATGGAGCTTCACCAGAGAA+TGG - chr6.2:6266415-6266434 None:intergenic 50.0%
GCATGGGAAGAATCACCATG+AGG + chr6.2:6266317-6266336 MS.gene031030:CDS 50.0%
GGATGCTTTGTGCATGGACT+AGG - chr6.2:6266687-6266706 None:intergenic 50.0%
GGGGACAAAGTTTGTGGCAA+AGG - chr6.2:6267004-6267023 None:intergenic 50.0%
GGTCAGCAATATGGTCAGCA+AGG - chr6.2:6266960-6266979 None:intergenic 50.0%
GTTGAGGGTTACCGTATTGC+TGG + chr6.2:6266745-6266764 MS.gene031030:CDS 50.0%
TCAGGCCATTGTAACCGGAA+AGG + chr6.2:6266921-6266940 MS.gene031030:CDS 50.0%
TCCAGACCGTGTCAAGTACT+TGG + chr6.2:6266387-6266406 MS.gene031030:CDS 50.0%
TCGAGGTCATCCACAGTAGA+TGG + chr6.2:6266524-6266543 MS.gene031030:CDS 50.0%
TCTACTCCAGACCTTGGCAT+GGG + chr6.2:6266301-6266320 MS.gene031030:CDS 50.0%
TGCCAAAAACCGTGAACTCG+AGG + chr6.2:6266507-6266526 MS.gene031030:CDS 50.0%
TGGTCAGCAAGGTTCTCTAG+AGG - chr6.2:6266949-6266968 None:intergenic 50.0%
TGGTGATTCTTCCCATGCCA+AGG - chr6.2:6266315-6266334 None:intergenic 50.0%
TGTGGATGACCTCGAGTTCA+CGG - chr6.2:6266519-6266538 None:intergenic 50.0%
TGTTGACGGGGTCAGCAATA+TGG - chr6.2:6266969-6266988 None:intergenic 50.0%
! ATGCCAAGGTCTGGAGTAGA+GGG - chr6.2:6266301-6266320 None:intergenic 50.0%
! CAATGGTGTCAAATTCGGCG+AGG + chr6.2:6266594-6266613 MS.gene031030:CDS 50.0%
! GACCTCGAGTTCACGGTTTT+TGG - chr6.2:6266512-6266531 None:intergenic 50.0%
! GGTGGAAGCTTTGACCCATT+GGG + chr6.2:6266805-6266824 MS.gene031030:CDS 50.0%
! GTTCTCTAGAGGTCCCTTTC+CGG - chr6.2:6266938-6266957 None:intergenic 50.0%
!! CCACAGTAGATGGGCTATGT+TGG + chr6.2:6266534-6266553 MS.gene031030:CDS 50.0%
!! CTTTGTGCATGGACTAGGCT+TGG - chr6.2:6266682-6266701 None:intergenic 50.0%
AAGCCTCTGGATCATCAGCG+AGG - chr6.2:6266831-6266850 None:intergenic 55.0%
ACCCCGTCAACAACAACGCA+TGG + chr6.2:6266977-6266996 MS.gene031030:CDS 55.0%
ATGGGTCAAAGCTTCCACCC+GGG - chr6.2:6266804-6266823 None:intergenic 55.0%
CCCAAGTACTTGACACGGTC+TGG - chr6.2:6266391-6266410 None:intergenic 55.0%
CCCCGTCAACAACAACGCAT+GGG + chr6.2:6266978-6266997 MS.gene031030:CDS 55.0%
CTCAGGGAAGACACATCCCA+AGG - chr6.2:6266563-6266582 None:intergenic 55.0%
CTCTACTCCAGACCTTGGCA+TGG + chr6.2:6266300-6266319 MS.gene031030:CDS 55.0%
GACTATGGTTGGGACACTGC+TGG + chr6.2:6266460-6266479 MS.gene031030:CDS 55.0%
GAGGGTTACCGTATTGCTGG+TGG + chr6.2:6266748-6266767 MS.gene031030:CDS 55.0%
GATCATCAGCGAGGCCCAAT+GGG - chr6.2:6266822-6266841 None:intergenic 55.0%
GTGTCCCAACCATAGTCACC+AGG - chr6.2:6266457-6266476 None:intergenic 55.0%
TCAAATTCGGCGAGGCTGTG+TGG + chr6.2:6266602-6266621 MS.gene031030:CDS 55.0%
TCTCCCTCTACTCCAGACCT+TGG + chr6.2:6266295-6266314 MS.gene031030:CDS 55.0%
TGGGCTATGTTGGGTGCCTT+GGG + chr6.2:6266544-6266563 MS.gene031030:CDS 55.0%
! ACGTTCCTTCTGGAAGCCAG+TGG + chr6.2:6266359-6266378 MS.gene031030:CDS 55.0%
! ATGGGCTATGTTGGGTGCCT+TGG + chr6.2:6266543-6266562 MS.gene031030:CDS 55.0%
! CATGCCAAGGTCTGGAGTAG+AGG - chr6.2:6266302-6266321 None:intergenic 55.0%
! CCCATGCGTTGTTGTTGACG+GGG - chr6.2:6266981-6267000 None:intergenic 55.0%
! CCTTCTGGAAGCCAGTGGTA+CGG + chr6.2:6266364-6266383 MS.gene031030:CDS 55.0%
! CGTATTGCTGGTGGACCTCT+TGG + chr6.2:6266757-6266776 MS.gene031030:CDS 55.0%
! GCCCATGCGTTGTTGTTGAC+GGG - chr6.2:6266982-6267001 None:intergenic 55.0%
! GGCCCATGCGTTGTTGTTGA+CGG - chr6.2:6266983-6267002 None:intergenic 55.0%
! GGGTGGAAGCTTTGACCCAT+TGG + chr6.2:6266804-6266823 MS.gene031030:CDS 55.0%
AAGCTTCCACCCGGGTAGAG+TGG - chr6.2:6266796-6266815 None:intergenic 60.0%
AGCTTCCACCCGGGTAGAGT+GGG - chr6.2:6266795-6266814 None:intergenic 60.0%
GAGGCTGTGTGGTTCAAGGC+AGG + chr6.2:6266613-6266632 MS.gene031030:CDS 60.0%
GGATCATCAGCGAGGCCCAA+TGG - chr6.2:6266823-6266842 None:intergenic 60.0%
GGGTCGACTACCTCACCAAG+AGG - chr6.2:6266775-6266794 None:intergenic 60.0%
GGTAGTCGACCCACTCTACC+CGG + chr6.2:6266783-6266802 MS.gene031030:CDS 60.0%
GTAGTCGACCCACTCTACCC+GGG + chr6.2:6266784-6266803 MS.gene031030:CDS 60.0%
! TGCTGGTGGACCTCTTGGTG+AGG + chr6.2:6266762-6266781 MS.gene031030:CDS 60.0%
!! CCGTACCACTGGCTTCCAGA+AGG - chr6.2:6266367-6266386 None:intergenic 60.0%
CACGGTCTGGACCGTACCAC+TGG - chr6.2:6266378-6266397 None:intergenic 65.0%
CGGCGAGGCTGTGTGGTTCA+AGG + chr6.2:6266609-6266628 MS.gene031030:CDS 65.0%
GGGCCTCGCTGATGATCCAG+AGG + chr6.2:6266825-6266844 MS.gene031030:CDS 65.0%
GTCGACCCACTCTACCCGGG+TGG + chr6.2:6266787-6266806 MS.gene031030:CDS 70.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 6266235 6267032 6266235 ID=MS.gene031030
chr6.2 mRNA 6266235 6267032 6266235 ID=MS.gene031030.t1;Parent=MS.gene031030
chr6.2 exon 6266235 6267032 6266235 ID=MS.gene031030.t1.exon1;Parent=MS.gene031030.t1
chr6.2 CDS 6266235 6267032 6266235 ID=cds.MS.gene031030.t1;Parent=MS.gene031030.t1
Gene Sequence

>MS.gene031030

ATGGCTACATCAACAATGGCTCTTTCTTCTTCAACAATAGTTGGGAAGGCAATCAAGCTTTCTCCCTCTACTCCAGACCTTGGCATGGGAAGAATCACCATGAGGAAAACAACCACCAAGAAGAACGTTCCTTCTGGAAGCCAGTGGTACGGTCCAGACCGTGTCAAGTACTTGGGCCCATTCTCTGGTGAAGCTCCATCTTACCTCACTGGTGAATTTCCTGGTGACTATGGTTGGGACACTGCTGGGCTTTCTGCTGACCCCGAGACATTTGCCAAAAACCGTGAACTCGAGGTCATCCACAGTAGATGGGCTATGTTGGGTGCCTTGGGATGTGTCTTCCCTGAGCTCTTATCTCGCAATGGTGTCAAATTCGGCGAGGCTGTGTGGTTCAAGGCAGGATCTCAAATCTTTAGTGAAGGAGGACTTGACTACTTGGGTAACCCAAGCCTAGTCCATGCACAAAGCATCCTTGCTATTTGGGCTTGCCAAGTTATCTTAATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTAGTCGACCCACTCTACCCGGGTGGAAGCTTTGACCCATTGGGCCTCGCTGATGATCCAGAGGCTTTTGCTGAGTTGAAGGTGAAAGAACTCAAGAATGGTAGGTTAGCTATGTTCTCTATGTTTGGATTTTTCGTTCAGGCCATTGTAACCGGAAAGGGACCTCTAGAGAACCTTGCTGACCATATTGCTGACCCCGTCAACAACAACGCATGGGCCTTTGCCACAAACTTTGTCCCCGGAAAGTGA
Protein sequence

>MS.gene031030.t1

MATSTMALSSSTIVGKAIKLSPSTPDLGMGRITMRKTTTKKNVPSGSQWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK