AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene64487


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64487.t1 MTR_2g042720 99.251 267 2 0 1 267 1 267 0.0 540
MS.gene64487.t1 MTR_8g023790 67.281 217 71 0 49 265 50 266 4.95e-106 308
MS.gene64487.t1 MTR_3g435460 51.741 201 91 2 65 265 56 250 1.33e-67 210
MS.gene64487.t1 MTR_3g435460 52.128 188 84 2 78 265 8 189 1.03e-62 196
MS.gene64487.t1 MTR_3g101670 41.912 272 143 5 1 266 2 264 2.05e-58 187
MS.gene64487.t1 MTR_5g098785 39.502 281 136 10 5 264 7 274 3.28e-51 169
MS.gene64487.t1 MTR_5g098780 39.789 284 129 11 5 264 7 272 3.81e-51 169
MS.gene64487.t1 MTR_2g008610 39.024 246 100 7 31 237 15 249 1.50e-40 141
MS.gene64487.t1 MTR_6g033320 40.488 205 94 7 65 260 49 234 4.01e-39 137
MS.gene64487.t1 MTR_4g015570 35.000 260 91 7 61 266 53 288 1.25e-38 137
MS.gene64487.t1 MTR_6g011880 36.032 247 122 9 39 266 31 260 1.62e-33 122
MS.gene64487.t1 MTR_6g011870 36.032 247 122 9 39 266 31 260 1.69e-33 122
MS.gene64487.t1 MTR_4g094605 33.099 284 144 10 2 266 5 261 3.09e-33 122
MS.gene64487.t1 MTR_6g011890 36.032 247 122 9 39 266 31 260 3.73e-33 122
MS.gene64487.t1 MTR_6g060175 35.135 222 113 7 60 265 74 280 5.45e-33 122
MS.gene64487.t1 MTR_1g026550 36.916 214 107 5 72 266 125 329 5.83e-33 123
MS.gene64487.t1 MTR_5g097280 33.210 271 141 10 3 255 1 249 1.86e-32 120
MS.gene64487.t1 MTR_6g012080 34.818 247 125 9 39 266 31 260 8.76e-32 118
MS.gene64487.t1 MTR_6g012110 36.283 226 108 9 60 266 52 260 1.72e-31 117
MS.gene64487.t1 MTR_2g081090 35.909 220 97 7 60 255 22 221 1.48e-30 114
MS.gene64487.t1 MTR_2g081090 35.909 220 97 7 60 255 49 248 2.19e-30 114
MS.gene64487.t1 MTR_6g060175 33.333 222 107 8 60 265 74 270 1.52e-27 107
MS.gene64487.t1 MTR_6g043600 35.242 227 119 8 45 266 21 224 5.32e-25 99.8
MS.gene64487.t1 MTR_3g070340 31.381 239 86 7 61 245 56 270 5.31e-24 98.2
MS.gene64487.t1 MTR_2g436960 45.679 81 38 2 187 267 27 101 3.42e-15 70.1
MS.gene64487.t1 MTR_5g098770 44.444 72 39 1 193 264 21 91 2.21e-13 64.7
MS.gene64487.t1 MTR_0003s0060 43.210 81 40 2 187 267 20 94 1.24e-12 62.8
MS.gene64487.t1 MTR_1g026550 52.632 57 27 0 72 128 125 181 5.79e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64487.t1 AT1G19150 76.250 240 57 0 27 266 30 269 9.27e-139 391
MS.gene64487.t1 AT3G61470 68.932 206 64 0 60 265 50 255 1.02e-103 302
MS.gene64487.t1 AT3G47470 46.835 237 106 4 29 265 35 251 2.80e-67 209
MS.gene64487.t1 AT1G45474 44.206 233 121 5 39 266 26 254 2.35e-55 179
MS.gene64487.t1 AT1G45474 44.206 233 121 5 39 266 26 254 2.35e-55 179
MS.gene64487.t1 AT1G61520 43.556 225 100 7 61 264 52 270 2.07e-50 167
MS.gene64487.t1 AT1G61520 43.556 225 100 7 61 264 52 270 2.07e-50 167
MS.gene64487.t1 AT1G61520 42.788 208 92 7 78 264 14 215 6.19e-43 146
MS.gene64487.t1 AT3G54890 42.439 205 90 7 65 260 48 233 6.04e-42 144
MS.gene64487.t1 AT1G15820 37.692 260 125 9 1 237 1 246 8.33e-41 141
MS.gene64487.t1 AT5G28450 63.366 101 37 0 165 265 71 171 7.07e-40 136
MS.gene64487.t1 AT5G01530 33.846 260 94 7 61 266 54 289 3.49e-36 130
MS.gene64487.t1 AT3G08940 32.095 296 119 9 28 266 16 286 1.13e-35 129
MS.gene64487.t1 AT2G05100 37.333 225 107 8 60 266 52 260 1.82e-34 125
MS.gene64487.t1 AT2G05070 37.333 225 107 8 60 266 52 260 2.20e-34 125
MS.gene64487.t1 AT4G10340 38.356 219 104 8 60 262 65 268 3.04e-33 122
MS.gene64487.t1 AT3G27690 36.916 214 101 8 60 255 53 250 3.31e-33 122
MS.gene64487.t1 AT3G27690 36.916 214 101 8 60 255 85 282 3.53e-33 122
MS.gene64487.t1 AT1G76570 33.103 290 148 11 4 266 57 327 3.93e-33 123
MS.gene64487.t1 AT2G34430 36.792 212 103 6 71 266 65 261 7.46e-33 121
MS.gene64487.t1 AT2G34420 36.792 212 103 6 71 266 64 260 7.68e-33 121
MS.gene64487.t1 AT1G29930 37.327 217 104 7 66 266 62 262 1.34e-32 120
MS.gene64487.t1 AT1G29920 37.327 217 104 7 66 266 62 262 1.35e-32 120
MS.gene64487.t1 AT1G29910 37.327 217 104 7 66 266 62 262 1.35e-32 120
MS.gene64487.t1 AT5G54270 36.816 201 95 6 72 255 64 249 5.17e-30 114
MS.gene64487.t1 AT2G40100 32.645 242 84 8 61 248 55 271 1.06e-27 107
MS.gene64487.t1 AT3G54890 36.757 185 89 7 65 240 48 213 3.14e-27 105
MS.gene64487.t1 AT2G05100 36.041 197 92 8 60 238 52 232 5.07e-26 104
MS.gene64487.t1 AT3G54890 34.804 204 73 7 65 260 48 199 1.01e-22 93.2
MS.gene64487.t1 AT3G54890 45.455 110 51 2 65 165 48 157 1.61e-20 86.3
MS.gene64487.t1 AT2G40100 34.400 125 33 2 61 142 55 173 5.18e-14 68.9
MS.gene64487.t1 AT3G08940 30.625 160 61 3 26 141 15 168 3.91e-13 67.4

Find 79 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAGCCTTCCTGGTGATTT+TGG 0.122432 2.4:+47559616 MS.gene64487:intron
CTTGTGCAGGCTTTCACTTC+AGG 0.220137 2.4:+47560959 MS.gene64487:intron
CTTCCTAATTGCAGCCTTCC+TGG 0.237195 2.4:+47559607 MS.gene64487:intron
CATTGTTCAACTAGCCCTAA+TGG 0.296474 2.4:+47560077 MS.gene64487:CDS
TACCTGCCATCAAGCCATTC+AGG 0.297044 2.4:-47559271 None:intergenic
GTTTGGCCTATTTGGTAACT+TGG 0.311362 2.4:-47560160 None:intergenic
GGGAACCACAATGGCCTATC+TGG 0.315426 2.4:-47559235 None:intergenic
GGGTAACCAACATCTGGTTT+TGG 0.345083 2.4:-47560183 None:intergenic
GACCTTCAACCCATCCCATT+AGG 0.346528 2.4:-47560092 None:intergenic
ACCTTCAACCCATCCCATTA+GGG 0.359126 2.4:-47560091 None:intergenic
CAGATCCAGAGTTACTAAAA+TGG 0.373832 2.4:+47559899 MS.gene64487:CDS
AGGTTCACCTGAGCCTGTTA+TGG 0.381131 2.4:+47560242 MS.gene64487:CDS
GATGGCTCATCTTGCTGATC+CGG 0.383167 2.4:+47560368 MS.gene64487:CDS
TTAGTCCTCAAAACCATAAC+AGG 0.387512 2.4:-47560255 None:intergenic
TGGGCAATGTTAGGAGTATC+AGG 0.387629 2.4:+47559952 MS.gene64487:CDS
TTGAGCCCAAGTTACCAAAT+AGG 0.388379 2.4:+47560154 MS.gene64487:CDS
ATTGTTCAACTAGCCCTAAT+GGG 0.392982 2.4:+47560078 MS.gene64487:CDS
AGGACTAAGGAGATTAAGAA+TGG 0.401890 2.4:+47560270 MS.gene64487:CDS
CATGCAAGATGGGCAATGTT+AGG 0.401951 2.4:+47559943 MS.gene64487:CDS
TTGTGCAGGCTTTCACTTCA+GGG 0.409776 2.4:+47560960 MS.gene64487:intron
CTGGTAGTTCACCTCCTGAA+TGG 0.410603 2.4:+47559257 MS.gene64487:CDS
TCACCTCCTGAATGGCTTGA+TGG 0.411611 2.4:+47559265 MS.gene64487:CDS
TAGTCCTATTGATAATTTGA+TGG 0.421103 2.4:+47560350 MS.gene64487:CDS
TGATAATGAAGTGGAGGAAA+TGG 0.422619 2.4:-47558989 None:intergenic
TGAGCCATCAAATTATCAAT+AGG 0.426138 2.4:-47560354 None:intergenic
ATGCAGAGAAATATGTCAAA+AGG 0.430272 2.4:+47559099 MS.gene64487:intron
GCCCTAATGGGATGGGTTGA+AGG 0.440052 2.4:+47560090 MS.gene64487:CDS
ACTACCCGGGTTAACGATAT+CGG 0.444821 2.4:-47560124 None:intergenic
TTTGGCCTATTTGGTAACTT+GGG 0.471715 2.4:-47560159 None:intergenic
ATGGCTCATCTTGCTGATCC+GGG 0.473722 2.4:+47560369 MS.gene64487:CDS
GATGGGTTGAAGGTCGAAGA+TGG 0.483510 2.4:+47560100 MS.gene64487:CDS
CATTCAGGAGGTGAACTACC+AGG 0.483786 2.4:-47559256 None:intergenic
CTCCTGAATGGCTTGATGGC+AGG 0.485385 2.4:+47559269 MS.gene64487:CDS
CTCAAAACCATAACAGGCTC+AGG 0.491099 2.4:-47560249 None:intergenic
GATCCTATGCAGTGGGGAAG+AGG 0.491222 2.4:+47560222 MS.gene64487:CDS
AGGTTGTTGATGTTGTTCCT+TGG 0.494298 2.4:-47559129 None:intergenic
GATAGGCCATTGTGGTTCCC+TGG 0.495533 2.4:+47559238 MS.gene64487:CDS
TTCAACTAGCCCTAATGGGA+TGG 0.498646 2.4:+47560082 MS.gene64487:CDS
GTGAACCACTTCCTCCAGAT+AGG 0.506478 2.4:+47559221 MS.gene64487:CDS
CCACCAGGGTAACCAACATC+TGG 0.511783 2.4:-47560189 None:intergenic
TGAACAATGAAGAGTGTTGT+TGG 0.515682 2.4:-47560063 None:intergenic
AGAACTAATGCATGCAAGAT+GGG 0.516375 2.4:+47559933 MS.gene64487:CDS
GGATCAAACCACAGTCCACC+AGG 0.517757 2.4:-47560204 None:intergenic
CAGAACTAATGCATGCAAGA+TGG 0.524297 2.4:+47559932 MS.gene64487:CDS
GGCTCAATATCAACACTACC+CGG 0.525605 2.4:-47560138 None:intergenic
GGACTAAGGAGATTAAGAAT+GGG 0.534450 2.4:+47560271 MS.gene64487:CDS
AATGGCCTATCTGGAGGAAG+TGG 0.535116 2.4:-47559226 None:intergenic
AACTTCTCATGGTACAATGC+AGG 0.549392 2.4:+47560018 MS.gene64487:CDS
ATGGGTTGAAGGTCGAAGAT+GGG 0.550205 2.4:+47560101 MS.gene64487:CDS
TCAACTAGCCCTAATGGGAT+GGG 0.556570 2.4:+47560083 MS.gene64487:CDS
AATGAAGAGTGTTGTTGGGT+CGG 0.558959 2.4:-47560058 None:intergenic
TTTCAAGCTGTTTATGTTGG+GGG 0.563088 2.4:+47560327 MS.gene64487:CDS
GAACAATGAAGAGTGTTGTT+GGG 0.566160 2.4:-47560062 None:intergenic
GAACCTCTTCCCCACTGCAT+AGG 0.570209 2.4:-47560225 None:intergenic
TTCCTCCAGATAGGCCATTG+TGG 0.574027 2.4:+47559230 MS.gene64487:CDS
AAACCAGATGTTGGTTACCC+TGG 0.575868 2.4:+47560186 MS.gene64487:CDS
GAGAAAATGTTGACATGACC+CGG 0.581640 2.4:-47560387 None:intergenic
GTGGTTTGATCCTATGCAGT+GGG 0.587829 2.4:+47560215 MS.gene64487:CDS
ATGGGCCGATATCGTTAACC+CGG 0.593103 2.4:+47560119 MS.gene64487:CDS
TCTGCTGCTGCTCAACCATG+AGG 0.597047 2.4:-47559149 None:intergenic
TTGGTTACCCTGGTGGACTG+TGG 0.598874 2.4:+47560196 MS.gene64487:CDS
CCAAACCCAAAACCAGATGT+TGG 0.602151 2.4:+47560177 MS.gene64487:CDS
TGGAAAACTTGATAATGAAG+TGG 0.604478 2.4:-47558998 None:intergenic
AAAACTTGATAATGAAGTGG+AGG 0.608373 2.4:-47558995 None:intergenic
GGGTCAAAACCAAAATCACC+AGG 0.636273 2.4:-47559625 None:intergenic
TGTGGTTTGATCCTATGCAG+TGG 0.646846 2.4:+47560214 MS.gene64487:CDS
CCAGATGTTGGTTACCCTGG+TGG 0.650614 2.4:+47560189 MS.gene64487:CDS
AACCACAATGGCCTATCTGG+AGG 0.659675 2.4:-47559232 None:intergenic
GAACAACATCAACAACCTCA+TGG 0.663312 2.4:+47559134 MS.gene64487:CDS
AAGACATACCTAATCCAAGA+GGG 0.664832 2.4:-47559645 None:intergenic
CAAAACCAAAATCACCAGGA+AGG 0.665067 2.4:-47559621 None:intergenic
ATTCAGGAGGTGAACTACCA+GGG 0.668133 2.4:-47559255 None:intergenic
GAACTACCAGGGAACCACAA+TGG 0.679112 2.4:-47559244 None:intergenic
TGGGCCGATATCGTTAACCC+GGG 0.686507 2.4:+47560120 MS.gene64487:CDS
GCTCAATATCAACACTACCC+GGG 0.701726 2.4:-47560137 None:intergenic
CTGCCATCAAGCCATTCAGG+AGG 0.705497 2.4:-47559268 None:intergenic
GATCAAACCACAGTCCACCA+GGG 0.721677 2.4:-47560203 None:intergenic
TAAGACATACCTAATCCAAG+AGG 0.724614 2.4:-47559646 None:intergenic
TGGTTTGATCCTATGCAGTG+GGG 0.795766 2.4:+47560216 MS.gene64487:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCCAAAATATAAAATAAAA+TGG - chr2.4:47559525-47559544 None:intergenic 10.0%
!! TTTAATTCATTATATAATAG+AGG + chr2.4:47560624-47560643 MS.gene64487:intron 10.0%
!!! TTCCATTTTATTTTATATTT+TGG + chr2.4:47559520-47559539 MS.gene64487:intron 10.0%
!! AATAATAAGTTAAAAAGAGT+TGG - chr2.4:47559031-47559050 None:intergenic 15.0%
!!! AATTTTCTTAATGGAAAATT+TGG + chr2.4:47559294-47559313 MS.gene64487:intron 15.0%
!! AAAAAAAAGAACATCATAGT+GGG - chr2.4:47559468-47559487 None:intergenic 20.0%
!! ACAATTAGAAATGCAAAAAA+AGG + chr2.4:47559184-47559203 MS.gene64487:CDS 20.0%
!! TAAAAAAAAGAACATCATAG+TGG - chr2.4:47559469-47559488 None:intergenic 20.0%
!!! GTTTTTACTTTCGTTTTATT+TGG + chr2.4:47559358-47559377 MS.gene64487:intron 20.0%
! AAAATTCATGTAGCTTCTAT+TGG - chr2.4:47560758-47560777 None:intergenic 25.0%
! ATGTTCACTTTATTATGTGT+TGG + chr2.4:47559689-47559708 MS.gene64487:intron 25.0%
! CAAATGGTAAAGAGTAAATA+TGG + chr2.4:47559431-47559450 MS.gene64487:intron 25.0%
! CATATTTACTCTTTACCATT+TGG - chr2.4:47559433-47559452 None:intergenic 25.0%
! CCAGAAATACTTGAAAAAAT+TGG + chr2.4:47559985-47560004 MS.gene64487:CDS 25.0%
! CCTATGAATTAATCATTTCA+GGG + chr2.4:47559875-47559894 MS.gene64487:intron 25.0%
! TTCTACTATGTTTCATTTGT+AGG + chr2.4:47560434-47560453 MS.gene64487:intron 25.0%
!! TAGTCCTATTGATAATTTGA+TGG + chr2.4:47560350-47560369 MS.gene64487:CDS 25.0%
!!! AATTTTTAAGCGTTAGGTTA+GGG + chr2.4:47560772-47560791 MS.gene64487:intron 25.0%
!!! CCAATTTTTTCAAGTATTTC+TGG - chr2.4:47559988-47560007 None:intergenic 25.0%
!!! TACATGAATTTTTAAGCGTT+AGG + chr2.4:47560766-47560785 MS.gene64487:intron 25.0%
AAACAATATGCACACTAACT+AGG + chr2.4:47560846-47560865 MS.gene64487:intron 30.0%
ATGCAGAGAAATATGTCAAA+AGG + chr2.4:47559099-47559118 MS.gene64487:intron 30.0%
ATTTGATCACATCCAATTAC+TGG + chr2.4:47559789-47559808 MS.gene64487:intron 30.0%
CCCTGAAATGATTAATTCAT+AGG - chr2.4:47559878-47559897 None:intergenic 30.0%
GCCTATGAATTAATCATTTC+AGG + chr2.4:47559874-47559893 MS.gene64487:intron 30.0%
GTTATGTCAAAAACTTCTCA+TGG + chr2.4:47560007-47560026 MS.gene64487:CDS 30.0%
TATATCGTGTATTTACCACA+TGG - chr2.4:47560544-47560563 None:intergenic 30.0%
TCATAGGCTAATTAGTTACT+TGG - chr2.4:47559862-47559881 None:intergenic 30.0%
TGAAGTTGTTTAGTGATGAT+AGG - chr2.4:47559566-47559585 None:intergenic 30.0%
TGAGCCATCAAATTATCAAT+AGG - chr2.4:47560357-47560376 None:intergenic 30.0%
! CATTATCAAGTTTTCCAAAC+AGG + chr2.4:47559004-47559023 MS.gene64487:CDS 30.0%
! TGGCAGGTAAATTTTCTTAA+TGG + chr2.4:47559285-47559304 MS.gene64487:intron 30.0%
!! AAAACTTGATAATGAAGTGG+AGG - chr2.4:47558998-47559017 None:intergenic 30.0%
!! GAATTTTTAAGCGTTAGGTT+AGG + chr2.4:47560771-47560790 MS.gene64487:intron 30.0%
!! GTTTTCAAGCTGTTTATGTT+GGG + chr2.4:47560325-47560344 MS.gene64487:CDS 30.0%
!! TGGAAAACTTGATAATGAAG+TGG - chr2.4:47559001-47559020 None:intergenic 30.0%
!! TGTTTTCAAGCTGTTTATGT+TGG + chr2.4:47560324-47560343 MS.gene64487:CDS 30.0%
!! TTTTCAAGCTGTTTATGTTG+GGG + chr2.4:47560326-47560345 MS.gene64487:CDS 30.0%
!!! TGTCAAAAGGTTTTAAACCA+AGG + chr2.4:47559112-47559131 MS.gene64487:CDS 30.0%
AAATCAAACCCTGAACCAAA+TGG + chr2.4:47559415-47559434 MS.gene64487:intron 35.0%
AAGACATACCTAATCCAAGA+GGG - chr2.4:47559648-47559667 None:intergenic 35.0%
AATTACTGGTGACTACTTGT+CGG + chr2.4:47559803-47559822 MS.gene64487:intron 35.0%
ACAAATCAATGTTTCGATCC+CGG + chr2.4:47560889-47560908 MS.gene64487:intron 35.0%
AGAACTAATGCATGCAAGAT+GGG + chr2.4:47559933-47559952 MS.gene64487:CDS 35.0%
AGGACTAAGGAGATTAAGAA+TGG + chr2.4:47560270-47560289 MS.gene64487:CDS 35.0%
ATTGTTCAACTAGCCCTAAT+GGG + chr2.4:47560078-47560097 MS.gene64487:CDS 35.0%
CAGATCCAGAGTTACTAAAA+TGG + chr2.4:47559899-47559918 MS.gene64487:CDS 35.0%
CATCATTGAATGCATGTGTA+AGG - chr2.4:47560602-47560621 None:intergenic 35.0%
CATGTAGCTTCTATTGGAAA+TGG - chr2.4:47560752-47560771 None:intergenic 35.0%
GGACTAAGGAGATTAAGAAT+GGG + chr2.4:47560271-47560290 MS.gene64487:CDS 35.0%
TAAAAAGAGTTGGACCTGTT+TGG - chr2.4:47559021-47559040 None:intergenic 35.0%
TAAGACATACCTAATCCAAG+AGG - chr2.4:47559649-47559668 None:intergenic 35.0%
TAGGCTAATTAGTTACTTGG+TGG - chr2.4:47559859-47559878 None:intergenic 35.0%
TGTTTAGTGATGATAGGCTT+TGG - chr2.4:47559560-47559579 None:intergenic 35.0%
TTAGTCCTCAAAACCATAAC+AGG - chr2.4:47560258-47560277 None:intergenic 35.0%
TTTCAAGCTGTTTATGTTGG+GGG + chr2.4:47560327-47560346 MS.gene64487:CDS 35.0%
! ACATAAGTTTTTGCTTGTGC+AGG + chr2.4:47560946-47560965 MS.gene64487:intron 35.0%
! ACTCTTTACCATTTGGTTCA+GGG - chr2.4:47559426-47559445 None:intergenic 35.0%
! CGTCTTCAATATGAAGTATC+AGG - chr2.4:47559724-47559743 None:intergenic 35.0%
! GCTTCTATTGGAAATGGATT+AGG - chr2.4:47560746-47560765 None:intergenic 35.0%
! TACTCTTTACCATTTGGTTC+AGG - chr2.4:47559427-47559446 None:intergenic 35.0%
! TGATAATGAAGTGGAGGAAA+TGG - chr2.4:47558992-47559011 None:intergenic 35.0%
! TTTGGCCTATTTGGTAACTT+GGG - chr2.4:47560162-47560181 None:intergenic 35.0%
!! GAACAATGAAGAGTGTTGTT+GGG - chr2.4:47560065-47560084 None:intergenic 35.0%
!! GCTAACCATTTTAGTAACTC+TGG - chr2.4:47559907-47559926 None:intergenic 35.0%
!! TCATGCCTTAATGTTTTGAG+CGG + chr2.4:47560666-47560685 MS.gene64487:intron 35.0%
!! TGAACAATGAAGAGTGTTGT+TGG - chr2.4:47560066-47560085 None:intergenic 35.0%
!! TTCAGGGTTTGATTTCTAGT+CGG - chr2.4:47559410-47559429 None:intergenic 35.0%
!! TTGCTATGCTTGCTTTTCTA+GGG + chr2.4:47560298-47560317 MS.gene64487:CDS 35.0%
!!! TGTTATGGTTTTGAGGACTA+AGG + chr2.4:47560257-47560276 MS.gene64487:CDS 35.0%
AACTTCTCATGGTACAATGC+AGG + chr2.4:47560018-47560037 MS.gene64487:CDS 40.0%
AGGTTGTTGATGTTGTTCCT+TGG - chr2.4:47559132-47559151 None:intergenic 40.0%
CAAAACCAAAATCACCAGGA+AGG - chr2.4:47559624-47559643 None:intergenic 40.0%
CAGAACTAATGCATGCAAGA+TGG + chr2.4:47559932-47559951 MS.gene64487:CDS 40.0%
CATTGTTCAACTAGCCCTAA+TGG + chr2.4:47560077-47560096 MS.gene64487:CDS 40.0%
CTTCATATTGAAGACGTGTC+TGG + chr2.4:47559728-47559747 MS.gene64487:intron 40.0%
GAACAACATCAACAACCTCA+TGG + chr2.4:47559134-47559153 MS.gene64487:CDS 40.0%
GACAAGTAGTCACCAGTAAT+TGG - chr2.4:47559804-47559823 None:intergenic 40.0%
GAGAAAATGTTGACATGACC+CGG - chr2.4:47560390-47560409 None:intergenic 40.0%
TCTCTCCGCTCAAAACATTA+AGG - chr2.4:47560674-47560693 None:intergenic 40.0%
TTGAGCCCAAGTTACCAAAT+AGG + chr2.4:47560154-47560173 MS.gene64487:CDS 40.0%
! GGGTCATGTCAACATTTTCT+CGG + chr2.4:47560389-47560408 MS.gene64487:CDS 40.0%
! GTTTGGCCTATTTGGTAACT+TGG - chr2.4:47560163-47560182 None:intergenic 40.0%
! TGGTGGTGAATCAATAGACA+CGG - chr2.4:47559842-47559861 None:intergenic 40.0%
!! AACATTGATTTGTCGCGTTG+TGG - chr2.4:47560882-47560901 None:intergenic 40.0%
!! AATGAAGAGTGTTGTTGGGT+CGG - chr2.4:47560061-47560080 None:intergenic 40.0%
!! ACATTGATTTGTCGCGTTGT+GGG - chr2.4:47560881-47560900 None:intergenic 40.0%
!! CTTGCTATGCTTGCTTTTCT+AGG + chr2.4:47560297-47560316 MS.gene64487:CDS 40.0%
!!! GATTTTGGTTTTGACCCTCT+TGG + chr2.4:47559631-47559650 MS.gene64487:CDS 40.0%
!!! GGTAACCAACATCTGGTTTT+GGG - chr2.4:47560185-47560204 None:intergenic 40.0%
ACCTTCAACCCATCCCATTA+GGG - chr2.4:47560094-47560113 None:intergenic 45.0%
ACTACCCGGGTTAACGATAT+CGG - chr2.4:47560127-47560146 None:intergenic 45.0%
AGGCATGACACATGAGTACA+TGG - chr2.4:47560654-47560673 None:intergenic 45.0%
ATTCAGGAGGTGAACTACCA+GGG - chr2.4:47559258-47559277 None:intergenic 45.0%
CATGCAAGATGGGCAATGTT+AGG + chr2.4:47559943-47559962 MS.gene64487:CDS 45.0%
CCAAACCCAAAACCAGATGT+TGG + chr2.4:47560177-47560196 MS.gene64487:CDS 45.0%
CTCAAAACCATAACAGGCTC+AGG - chr2.4:47560252-47560271 None:intergenic 45.0%
GCTCAATATCAACACTACCC+GGG - chr2.4:47560140-47560159 None:intergenic 45.0%
GGCTCAATATCAACACTACC+CGG - chr2.4:47560141-47560160 None:intergenic 45.0%
GGGTCAAAACCAAAATCACC+AGG - chr2.4:47559628-47559647 None:intergenic 45.0%
GTGGTTTGATCCTATGCAGT+GGG + chr2.4:47560215-47560234 MS.gene64487:CDS 45.0%
TACTTCTAACACGTCTCAGC+CGG - chr2.4:47560911-47560930 None:intergenic 45.0%
TCAACTAGCCCTAATGGGAT+GGG + chr2.4:47560083-47560102 MS.gene64487:CDS 45.0%
TGGTTTGATCCTATGCAGTG+GGG + chr2.4:47560216-47560235 MS.gene64487:CDS 45.0%
TGTGGTTTGATCCTATGCAG+TGG + chr2.4:47560214-47560233 MS.gene64487:CDS 45.0%
TTCAACTAGCCCTAATGGGA+TGG + chr2.4:47560082-47560101 MS.gene64487:CDS 45.0%
TTGTGCAGGCTTTCACTTCA+GGG + chr2.4:47560960-47560979 MS.gene64487:intron 45.0%
! AAACCAGATGTTGGTTACCC+TGG + chr2.4:47560186-47560205 MS.gene64487:CDS 45.0%
! ACATCATAGTGGGACACAAG+TGG - chr2.4:47559458-47559477 None:intergenic 45.0%
! ATGGGTTGAAGGTCGAAGAT+GGG + chr2.4:47560101-47560120 MS.gene64487:CDS 45.0%
!! CGATTAGTTTCACGACCATG+TGG + chr2.4:47560526-47560545 MS.gene64487:intron 45.0%
!! CTGAGCCTGTTATGGTTTTG+AGG + chr2.4:47560250-47560269 MS.gene64487:CDS 45.0%
!! GGGTAACCAACATCTGGTTT+TGG - chr2.4:47560186-47560205 None:intergenic 45.0%
!! GGTTTTGACCCTCTTGGATT+AGG + chr2.4:47559637-47559656 MS.gene64487:CDS 45.0%
!! TGGGCAATGTTAGGAGTATC+AGG + chr2.4:47559952-47559971 MS.gene64487:CDS 45.0%
!!! CCAACATCTGGTTTTGGGTT+TGG - chr2.4:47560180-47560199 None:intergenic 45.0%
!!! GGTTTTGGGTTTGGCCTATT+TGG - chr2.4:47560171-47560190 None:intergenic 45.0%
AACCACAATGGCCTATCTGG+AGG - chr2.4:47559235-47559254 None:intergenic 50.0%
AATGGCCTATCTGGAGGAAG+TGG - chr2.4:47559229-47559248 None:intergenic 50.0%
ACTTCTAACACGTCTCAGCC+GGG - chr2.4:47560910-47560929 None:intergenic 50.0%
AGGTTCACCTGAGCCTGTTA+TGG + chr2.4:47560242-47560261 MS.gene64487:CDS 50.0%
ATGGCTCATCTTGCTGATCC+GGG + chr2.4:47560369-47560388 MS.gene64487:CDS 50.0%
ATGGGCCGATATCGTTAACC+CGG + chr2.4:47560119-47560138 MS.gene64487:CDS 50.0%
CATTCAGGAGGTGAACTACC+AGG - chr2.4:47559259-47559278 None:intergenic 50.0%
CTGGTAGTTCACCTCCTGAA+TGG + chr2.4:47559257-47559276 MS.gene64487:CDS 50.0%
CTTCCTAATTGCAGCCTTCC+TGG + chr2.4:47559607-47559626 MS.gene64487:intron 50.0%
CTTGTGCAGGCTTTCACTTC+AGG + chr2.4:47560959-47560978 MS.gene64487:intron 50.0%
GAACTACCAGGGAACCACAA+TGG - chr2.4:47559247-47559266 None:intergenic 50.0%
GACCTTCAACCCATCCCATT+AGG - chr2.4:47560095-47560114 None:intergenic 50.0%
GATCAAACCACAGTCCACCA+GGG - chr2.4:47560206-47560225 None:intergenic 50.0%
GATGGCTCATCTTGCTGATC+CGG + chr2.4:47560368-47560387 MS.gene64487:CDS 50.0%
GTGAACCACTTCCTCCAGAT+AGG + chr2.4:47559221-47559240 MS.gene64487:CDS 50.0%
GTGACTACTTGTCGGTACCA+CGG + chr2.4:47559811-47559830 MS.gene64487:intron 50.0%
TACCTGCCATCAAGCCATTC+AGG - chr2.4:47559274-47559293 None:intergenic 50.0%
TCACCAGGAAGGCTGCAATT+AGG - chr2.4:47559613-47559632 None:intergenic 50.0%
TCACCTCCTGAATGGCTTGA+TGG + chr2.4:47559265-47559284 MS.gene64487:CDS 50.0%
TTCCTCCAGATAGGCCATTG+TGG + chr2.4:47559230-47559249 MS.gene64487:CDS 50.0%
! TGCAGCCTTCCTGGTGATTT+TGG + chr2.4:47559616-47559635 MS.gene64487:intron 50.0%
!! GATGGGTTGAAGGTCGAAGA+TGG + chr2.4:47560100-47560119 MS.gene64487:CDS 50.0%
!! TGATTTCTAGTCGGTGCGTG+CGG - chr2.4:47559401-47559420 None:intergenic 50.0%
!! TTGATTTGTCGCGTTGTGGG+AGG - chr2.4:47560878-47560897 None:intergenic 50.0%
CCACCAGGGTAACCAACATC+TGG - chr2.4:47560192-47560211 None:intergenic 55.0%
CTGCCATCAAGCCATTCAGG+AGG - chr2.4:47559271-47559290 None:intergenic 55.0%
GAACCTCTTCCCCACTGCAT+AGG - chr2.4:47560228-47560247 None:intergenic 55.0%
GATAGGCCATTGTGGTTCCC+TGG + chr2.4:47559238-47559257 MS.gene64487:CDS 55.0%
GATCCTATGCAGTGGGGAAG+AGG + chr2.4:47560222-47560241 MS.gene64487:CDS 55.0%
GGATCAAACCACAGTCCACC+AGG - chr2.4:47560207-47560226 None:intergenic 55.0%
GGGAACCACAATGGCCTATC+TGG - chr2.4:47559238-47559257 None:intergenic 55.0%
TCTGCTGCTGCTCAACCATG+AGG - chr2.4:47559152-47559171 None:intergenic 55.0%
TGGGCCGATATCGTTAACCC+GGG + chr2.4:47560120-47560139 MS.gene64487:CDS 55.0%
! CCAGATGTTGGTTACCCTGG+TGG + chr2.4:47560189-47560208 MS.gene64487:CDS 55.0%
! CTCCTGAATGGCTTGATGGC+AGG + chr2.4:47559269-47559288 MS.gene64487:CDS 55.0%
! GTGCGTGCGGAGGATACTTT+TGG - chr2.4:47559388-47559407 None:intergenic 55.0%
!! GCCCTAATGGGATGGGTTGA+AGG + chr2.4:47560090-47560109 MS.gene64487:CDS 55.0%
!! TTGGTTACCCTGGTGGACTG+TGG + chr2.4:47560196-47560215 MS.gene64487:CDS 55.0%
CAATAGACACGGCACGACCG+TGG - chr2.4:47559831-47559850 None:intergenic 60.0%
! TTTCTAGTCGGTGCGTGCGG+AGG - chr2.4:47559398-47559417 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 47558979 47560985 47558979 ID=MS.gene64487
chr2.4 mRNA 47558979 47560985 47558979 ID=MS.gene64487.t1;Parent=MS.gene64487
chr2.4 exon 47558979 47559025 47558979 ID=MS.gene64487.t1.exon1;Parent=MS.gene64487.t1
chr2.4 CDS 47558979 47559025 47558979 ID=cds.MS.gene64487.t1;Parent=MS.gene64487.t1
chr2.4 exon 47559105 47559290 47559105 ID=MS.gene64487.t1.exon2;Parent=MS.gene64487.t1
chr2.4 CDS 47559105 47559290 47559105 ID=cds.MS.gene64487.t1;Parent=MS.gene64487.t1
chr2.4 exon 47559621 47559658 47559621 ID=MS.gene64487.t1.exon3;Parent=MS.gene64487.t1
chr2.4 CDS 47559621 47559658 47559621 ID=cds.MS.gene64487.t1;Parent=MS.gene64487.t1
chr2.4 exon 47559896 47560410 47559896 ID=MS.gene64487.t1.exon4;Parent=MS.gene64487.t1
chr2.4 CDS 47559896 47560410 47559896 ID=cds.MS.gene64487.t1;Parent=MS.gene64487.t1
chr2.4 exon 47560968 47560985 47560968 ID=MS.gene64487.t1.exon5;Parent=MS.gene64487.t1
chr2.4 CDS 47560968 47560985 47560968 ID=cds.MS.gene64487.t1;Parent=MS.gene64487.t1
Gene Sequence

>MS.gene64487

ATGGCTTTAGCCATTTCCTCCACTTCATTATCAAGTTTTCCAAACAGGTCCAACTCTTTTTAACTTATTATTATTATGCTCATTGATTAATTCTTAAACTATATAGTTTTTTGCATTTTGATGCAGAGAAATATGTCAAAAGGTTTTAAACCAAGGAACAACATCAACAACCTCATGGTTGAGCAGCAGCAGAAGAAGAACACTTACAATTAGAAATGCAAAAAAAGGAGTGTCAGATGTTTGTGAACCACTTCCTCCAGATAGGCCATTGTGGTTCCCTGGTAGTTCACCTCCTGAATGGCTTGATGGCAGGTAAATTTTCTTAATGGAAAATTTGGAGCAGTTAGATATAATTTTTGTTTTTTTAAAAAAAAAAATTGTTTTTACTTTCGTTTTATTTGGTAAACCAAAAGTATCCTCCGCACGCACCGACTAGAAATCAAACCCTGAACCAAATGGTAAAGAGTAAATATGGACCACTTGTGTCCCACTATGATGTTCTTTTTTTTACTTTAATTTAAAAAAATATTTTTTTATTTATTTCCATTTTATTTTATATTTTGGAAGAAAAAAAAATGCCAAAGCCTATCATCACTAAACAACTTCAGCAGCATAATTGTTTGATCTTCTTCCTAATTGCAGCCTTCCTGGTGATTTTGGTTTTGACCCTCTTGGATTAGGTATGTCTTACTTTCAATATGAATAACAAAATGTTCACTTTATTATGTGTTGGTCTATTTAGCCTGATACTTCATATTGAAGACGTGTCTGGTGTCTGATACATATCGACGTCGTACACGACACTGTAACATTTGATCACATCCAATTACTGGTGACTACTTGTCGGTACCACGGTCGTGCCGTGTCTATTGATTCACCACCAAGTAACTAATTAGCCTATGAATTAATCATTTCAGGGTCAGATCCAGAGTTACTAAAATGGTTAGCACAAGCAGAACTAATGCATGCAAGATGGGCAATGTTAGGAGTATCAGGAATTTTAATTCCAGAAATACTTGAAAAAATTGGTTATGTCAAAAACTTCTCATGGTACAATGCAGGTTCAGTAGAATATTTCGCCGACCCAACAACACTCTTCATTGTTCAACTAGCCCTAATGGGATGGGTTGAAGGTCGAAGATGGGCCGATATCGTTAACCCGGGTAGTGTTGATATTGAGCCCAAGTTACCAAATAGGCCAAACCCAAAACCAGATGTTGGTTACCCTGGTGGACTGTGGTTTGATCCTATGCAGTGGGGAAGAGGTTCACCTGAGCCTGTTATGGTTTTGAGGACTAAGGAGATTAAGAATGGGAGACTTGCTATGCTTGCTTTTCTAGGGTTTTGTTTTCAAGCTGTTTATGTTGGGGGTAGTCCTATTGATAATTTGATGGCTCATCTTGCTGATCCGGGTCATGTCAACATTTTCTCGGTAATTAATAATCTTTATTTCATTTCTACTATGTTTCATTTGTAGGTTTCTTATCAATTAGCTGTTTGTTTGTGCTGTTCATATAGCAATTGAATTGTTAGAGTTTAAGTGTGATCGATTAGTTTCACGACCATGTGGTAAATACACGATATATACAATTTAATATATACATCGTTAGTGTAAAATAGCCTTACACATGCATTCAATGATGTTTTTAATTCATTATATAATAGAGGTGATCCATGTACTCATGTGTCATGCCTTAATGTTTTGAGCGGAGAGATGTAAGTGTGTGAAAAATAGATGTAAATGTTGATATCGTTGTGACTACGCCTAATCCATTTCCAATAGAAGCTACATGAATTTTTAAGCGTTAGGTTAGGGTGAGTGTTACATGTACAAGTCTAACTATTATATATTGATTACTACAAAATAAAACAATATGCACACTAACTAGGAGCTAGCCTCCCACAACGCGACAAATCAATGTTTCGATCCCGGCTGAGACGTGTTAGAAGTAATGAGAATGATTGTGACATAAGTTTTTGCTTGTGCAGGCTTTCACTTCAGGGTAG

Protein sequence

>MS.gene64487.t1

MALAISSTSLSSFPNREICQKVLNQGTTSTTSWLSSSRRRTLTIRNAKKGVSDVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSGILIPEILEKIGYVKNFSWYNAGSVEYFADPTTLFIVQLALMGWVEGRRWADIVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQAVYVGGSPIDNLMAHLADPGHVNIFSAFTSG