AlfalfaGEDB | MS.gene028321

M. sativa cultivar XinJiangDaYe / MS.gene028321

KEGG: K08912
GO: -
PFAM: PF00504.24

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028321.t1	AAC25775.1	100	266	0	0	1	266	1	266	5.50E-151	543.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028321.t1	P07371	97.0	265	8	0	2	266	5	269	7.5e-149	527.7

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028321.t1	O81391	100.0	266	0	0	1	266	1	266	3.9e-151	543.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene031016	MS.gene028321	PPI
MS.gene38214	MS.gene028321	PPI
MS.gene20445	MS.gene028321	PPI
MS.gene99767	MS.gene028321	PPI
MS.gene031028	MS.gene028321	PPI
MS.gene20444	MS.gene028321	PPI
MS.gene028321	MS.gene03545	PPI
MS.gene028321	MS.gene35137	PPI
MS.gene028321	MS.gene93362	PPI
MS.gene81230	MS.gene028321	PPI
MS.gene38046	MS.gene028321	PPI
MS.gene028321	MS.gene88379	PPI
MS.gene20446	MS.gene028321	PPI
MS.gene031355	MS.gene028321	PPI
MS.gene36470	MS.gene028321	PPI
MS.gene20443	MS.gene028321	PPI
MS.gene028321	MS.gene020883	PPI
MS.gene028321	MS.gene20445	PPI
MS.gene028321	MS.gene031030	PPI
MS.gene023132	MS.gene028321	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028321.t1	MTR_4g094605	99.624	266	1	0	1	266	1	266	0.0	538
MS.gene028321.t1	MTR_6g012080	90.226	266	25	1	1	266	1	265	1.83e-177	489
MS.gene028321.t1	MTR_6g011870	90.977	266	23	1	1	266	1	265	7.70e-175	482
MS.gene028321.t1	MTR_6g011880	90.226	266	25	1	1	266	1	265	5.42e-174	480
MS.gene028321.t1	MTR_6g011890	90.226	266	25	1	1	266	1	265	6.25e-174	480
MS.gene028321.t1	MTR_6g012110	89.098	266	28	1	1	266	1	265	6.05e-172	475
MS.gene028321.t1	MTR_5g097280	82.500	240	38	1	27	266	30	265	3.03e-149	417
MS.gene028321.t1	MTR_6g043600	83.621	232	17	2	35	266	19	229	7.20e-137	385
MS.gene028321.t1	MTR_2g081090	73.444	241	51	3	27	265	34	263	6.53e-121	346
MS.gene028321.t1	MTR_2g081090	73.191	235	61	2	33	265	2	236	1.36e-120	344
MS.gene028321.t1	MTR_6g060175	50.847	236	101	6	29	254	44	274	6.95e-66	207
MS.gene028321.t1	MTR_1g026550	46.914	243	116	7	23	254	82	322	3.02e-60	194
MS.gene028321.t1	MTR_6g060175	49.153	236	95	7	29	254	44	264	2.06e-59	190
MS.gene028321.t1	MTR_5g098785	37.500	272	132	11	9	254	10	269	7.53e-38	134
MS.gene028321.t1	MTR_5g098780	35.231	281	130	11	6	254	7	267	2.83e-37	133
MS.gene028321.t1	MTR_6g033320	43.655	197	90	7	64	254	52	233	1.04e-36	130
MS.gene028321.t1	MTR_8g023790	37.607	234	105	10	34	250	47	256	1.53e-36	130
MS.gene028321.t1	MTR_3g101670	40.206	194	102	5	65	250	66	253	4.42e-35	127
MS.gene028321.t1	MTR_2g042720	36.726	226	107	9	53	261	60	266	3.11e-32	119
MS.gene028321.t1	MTR_3g435460	35.714	196	102	5	67	253	63	243	5.38e-30	113
MS.gene028321.t1	MTR_4g015570	43.827	162	76	6	94	254	134	281	8.79e-28	108
MS.gene028321.t1	MTR_1g026550	42.000	150	81	4	24	169	83	230	2.14e-27	106
MS.gene028321.t1	MTR_3g435460	34.392	189	100	5	74	253	9	182	2.52e-26	102
MS.gene028321.t1	MTR_3g070340	36.564	227	80	10	65	244	65	274	3.56e-21	90.5
MS.gene028321.t1	MTR_5g098770	55.405	74	32	1	182	254	13	86	3.76e-21	85.5
MS.gene028321.t1	MTR_2g008610	33.816	207	87	8	67	243	73	259	7.22e-18	81.3
MS.gene028321.t1	MTR_2g436960	50.685	73	29	2	181	253	27	92	7.81e-13	63.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028321.t1	AT2G34430	88.060	268	28	3	1	266	1	266	1.13e-170	472
MS.gene028321.t1	AT1G29930	87.687	268	30	3	1	266	1	267	1.12e-169	469
MS.gene028321.t1	AT1G29920	87.313	268	31	3	1	266	1	267	6.11e-169	468
MS.gene028321.t1	AT1G29910	87.313	268	31	3	1	266	1	267	6.11e-169	468
MS.gene028321.t1	AT2G34420	87.640	267	30	3	1	266	1	265	1.06e-167	464
MS.gene028321.t1	AT2G05070	77.206	272	49	4	1	266	1	265	2.60e-149	418
MS.gene028321.t1	AT3G27690	75.368	272	55	3	2	266	32	298	1.76e-148	417
MS.gene028321.t1	AT2G05100	76.471	272	51	4	1	266	1	265	1.96e-148	416
MS.gene028321.t1	AT3G27690	76.190	273	51	4	1	266	1	266	4.87e-148	415
MS.gene028321.t1	AT2G05100	75.000	244	48	4	1	238	1	237	4.31e-126	361
MS.gene028321.t1	AT5G54270	70.881	261	60	6	20	265	5	264	1.66e-120	345
MS.gene028321.t1	AT1G76570	48.416	221	104	5	44	254	100	320	9.31e-61	195
MS.gene028321.t1	AT4G10340	50.000	222	98	6	37	254	53	265	1.42e-60	193
MS.gene028321.t1	AT3G54890	45.178	197	87	7	64	254	51	232	2.70e-38	134
MS.gene028321.t1	AT1G45474	37.662	231	127	6	29	250	20	242	4.90e-38	134
MS.gene028321.t1	AT1G45474	37.662	231	127	6	29	250	20	242	4.90e-38	134
MS.gene028321.t1	AT1G61520	38.400	250	117	10	30	254	28	265	2.46e-37	133
MS.gene028321.t1	AT1G61520	38.400	250	117	10	30	254	28	265	2.46e-37	133
MS.gene028321.t1	AT3G61470	37.768	233	103	10	35	250	38	245	6.83e-37	131
MS.gene028321.t1	AT1G61520	39.614	207	90	9	74	255	15	211	1.46e-33	121
MS.gene028321.t1	AT1G19150	36.134	238	115	9	41	261	52	269	4.08e-32	119
MS.gene028321.t1	AT3G47470	40.838	191	99	7	67	253	64	244	4.03e-31	116
MS.gene028321.t1	AT3G08940	35.793	271	112	12	29	254	26	279	2.84e-29	112
MS.gene028321.t1	AT5G01530	43.210	162	77	6	94	254	135	282	2.18e-27	107
MS.gene028321.t1	AT3G54890	39.175	194	69	7	64	254	51	198	2.27e-25	100
MS.gene028321.t1	AT3G54890	41.615	161	74	6	64	219	51	196	3.47e-24	97.1
MS.gene028321.t1	AT2G40100	42.208	154	69	7	94	244	136	272	1.75e-22	94.0
MS.gene028321.t1	AT1G15820	34.300	207	86	7	67	243	70	256	6.25e-19	84.0
MS.gene028321.t1	AT5G28450	55.556	63	26	2	190	250	99	161	1.75e-13	67.4
MS.gene028321.t1	AT3G54890	43.820	89	41	3	64	150	51	132	9.63e-12	62.4

Find 127 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CGGTTCTTGGCGAATGTCTC+TGG	0.172290	4.2:+17663291	None:intergenic
CATAATGACCATTCACTTTC+CGG	0.213438	4.2:+17662765	None:intergenic
TCCTGAGGAGGCTACTTTCT+TGG	0.215971	4.2:+17663437	None:intergenic
ACCTTGCAGCTCCCAATTCT+TGG	0.262027	4.2:+17663484	None:intergenic
CTCAGAGCATTCTTGCCATC+TGG	0.267634	4.2:-17663092	MS.gene028321:CDS
GTGGGCTATGTTGGGAGCCT+TGG	0.274776	4.2:-17663244	MS.gene028321:CDS
GACTTCAAGTTCACGGTTCT+TGG	0.287728	4.2:+17663278	None:intergenic
CTCTGAGCATGGACCAAACT+TGG	0.318566	4.2:+17663108	None:intergenic
GTTCTCCAAAGGTCCCTTTC+CGG	0.323199	4.2:+17662852	None:intergenic
AACCCCTTCAAGCCAAGAAT+TGG	0.330885	4.2:-17663496	MS.gene028321:CDS
TTCAACTCTGCGAAAGCCTC+TGG	0.342564	4.2:+17662946	None:intergenic
CCTAAGTACTTAACACGGTC+TGG	0.354037	4.2:+17663399	None:intergenic
GCTCCCAATTCTTGGCTTGA+AGG	0.367955	4.2:+17663492	None:intergenic
CTTGAAGGGGTTAGCTTGAC+TGG	0.368606	4.2:+17663507	None:intergenic
TGGGCTATGTTGGGAGCCTT+GGG	0.369590	4.2:-17663243	MS.gene028321:CDS
CTACTTGGGTAACCCAAGTT+TGG	0.372382	4.2:-17663121	MS.gene028321:CDS
GTCCACCCTCGCTAAAGATC+TGG	0.379439	4.2:+17663148	None:intergenic
GGAGGCAGCTTTGACCCATT+GGG	0.385139	4.2:-17662982	MS.gene028321:CDS
GCCCATGCGTTGTTGTTGAC+TGG	0.388666	4.2:+17662808	None:intergenic
TATGTTCGGATTCTTTGTTC+AGG	0.392718	4.2:-17662884	MS.gene028321:CDS
CTCTCTTCACCAACCTTGGC+TGG	0.392734	4.2:-17663534	MS.gene028321:CDS
CGAGGGTGGACTTGACTACT+TGG	0.394014	4.2:-17663136	MS.gene028321:CDS
CCATAGCAGGTGGGCTATGT+TGG	0.398243	4.2:-17663253	MS.gene028321:CDS
TCTCGCAATGGTGTTAAATT+CGG	0.399582	4.2:-17663198	MS.gene028321:CDS
TATGCCACCAACTTTGTTCC+CGG	0.408282	4.2:-17662784	MS.gene028321:CDS
GTTGAAGGTTACCGTATTGC+TGG	0.411128	4.2:-17663042	MS.gene028321:CDS
AGGAGGCAGCTTTGACCCAT+TGG	0.412272	4.2:-17662983	MS.gene028321:CDS
TTAGCCATGTTCTCTATGTT+CGG	0.413048	4.2:-17662898	MS.gene028321:CDS
CTCCCAATTCTTGGCTTGAA+GGG	0.413150	4.2:+17663493	None:intergenic
ATAATGACCATTCACTTTCC+GGG	0.417015	4.2:+17662766	None:intergenic
TTTCGCAGAGTTGAAGGTTA+AGG	0.417491	4.2:-17662938	MS.gene028321:CDS
ACACGGTCTGGGCCGTACCA+TGG	0.426815	4.2:+17663411	None:intergenic
CAGGCTATTGTGACCGGAAA+GGG	0.431695	4.2:-17662865	MS.gene028321:CDS
CGTATTGCTGGTGGACCTCT+TGG	0.432323	4.2:-17663030	MS.gene028321:CDS
GGCTCTCTCTTCACCAACCT+TGG	0.434383	4.2:-17663538	MS.gene028321:CDS
AACCTTCAACGGCTCCCATC+AGG	0.437614	4.2:+17663055	None:intergenic
AATGGGTCAAAGCTGCCTCC+TGG	0.443349	4.2:+17662985	None:intergenic
TGTGACCGGAAAGGGACCTT+TGG	0.445095	4.2:-17662857	MS.gene028321:CDS
TCAGAGCATTCTTGCCATCT+GGG	0.457297	4.2:-17663091	MS.gene028321:CDS
CACGGTCTGGGCCGTACCAT+GGG	0.459595	4.2:+17663412	None:intergenic
TTAAATTCGGTGAGGCTGTA+TGG	0.460132	4.2:-17663185	MS.gene028321:CDS
CATAGCAGGTGGGCTATGTT+GGG	0.463478	4.2:-17663252	MS.gene028321:CDS
AGAGGCTTTCGCAGAGTTGA+AGG	0.464620	4.2:-17662944	MS.gene028321:CDS
CCCATGCGTTGTTGTTGACT+GGG	0.468289	4.2:+17662809	None:intergenic
ACCCCTTCAAGCCAAGAATT+GGG	0.469174	4.2:-17663495	MS.gene028321:CDS
CCAACATAGCCCACCTGCTA+TGG	0.470589	4.2:+17663253	None:intergenic
ATCCTGATGGGAGCCGTTGA+AGG	0.475643	4.2:-17663057	MS.gene028321:CDS
CCATTGCGAGACAAAAGCTC+TGG	0.476957	4.2:+17663210	None:intergenic
GTGTCCCATCCGTAGTCACC+TGG	0.480375	4.2:+17663333	None:intergenic
GGTCGTCAGCTAGGCCCAAT+GGG	0.483278	4.2:+17662968	None:intergenic
CGGTGAGGCTGTATGGTTCA+AGG	0.483338	4.2:-17663178	MS.gene028321:CDS
CTTGACTGGCTTGCCAGCCA+AGG	0.485508	4.2:+17663521	None:intergenic
AAGTACTTAGGCCCATTCTC+TGG	0.486720	4.2:-17663387	MS.gene028321:CDS
TTTGTTCAGGCTATTGTGAC+CGG	0.488454	4.2:-17662871	MS.gene028321:CDS
AAGCCTCTGGGTCGTCAGCT+AGG	0.492481	4.2:+17662959	None:intergenic
GGGTCGTCAGCTAGGCCCAA+TGG	0.492858	4.2:+17662967	None:intergenic
CCAGACCGTGTTAAGTACTT+AGG	0.508216	4.2:-17663399	MS.gene028321:CDS
ACTGGCTTGCCAGCCAAGGT+TGG	0.509911	4.2:+17663525	None:intergenic
TGAGGAGGCTACTTTCTTGG+TGG	0.512202	4.2:+17663440	None:intergenic
TCCACCCTCGCTAAAGATCT+GGG	0.513274	4.2:+17663149	None:intergenic
GACTGGGTCGGCAAGATGAT+CGG	0.513364	4.2:+17662825	None:intergenic
ACCCAGTCAACAACAACGCA+TGG	0.514482	4.2:-17662810	MS.gene028321:CDS
GGGAACAAAGTTGGTGGCAT+AGG	0.515086	4.2:+17662786	None:intergenic
TCACTTTCCGGGAACAAAGT+TGG	0.517061	4.2:+17662777	None:intergenic
ATGGGTCAAAGCTGCCTCCT+GGG	0.519919	4.2:+17662986	None:intergenic
AAGCTGCCTCCTGGGTAAAG+TGG	0.523139	4.2:+17662994	None:intergenic
AGCTGCCTCCTGGGTAAAGT+GGG	0.524528	4.2:+17662995	None:intergenic
ACTCTCCAGTCAAGTAAGAC+GGG	0.525262	4.2:+17663358	None:intergenic
GGTTCTTGGCGAATGTCTCT+GGG	0.525535	4.2:+17663292	None:intergenic
TATGGATGACTTCAAGTTCA+CGG	0.526961	4.2:+17663271	None:intergenic
CTCGCTAAAGATCTGGGATC+CGG	0.527239	4.2:+17663155	None:intergenic
GTACCATGGGCTTCCTGAGG+AGG	0.529428	4.2:+17663425	None:intergenic
TCCTCAGGAAGCCCATGGTA+CGG	0.534699	4.2:-17663423	MS.gene028321:CDS
CTTTCCGGGAACAAAGTTGG+TGG	0.536757	4.2:+17662780	None:intergenic
TCCCAGATCTTTAGCGAGGG+TGG	0.536796	4.2:-17663150	MS.gene028321:CDS
ACCAAGAAAGTAGCCTCCTC+AGG	0.538963	4.2:-17663438	MS.gene028321:CDS
TGCGTTGTTGTTGACTGGGT+CGG	0.549416	4.2:+17662813	None:intergenic
TCAACTCTGCGAAAGCCTCT+GGG	0.551997	4.2:+17662947	None:intergenic
GGAGAGTTCCCAGGTGACTA+CGG	0.554538	4.2:-17663342	MS.gene028321:CDS
CAAGAGGTCCACCAGCAATA+CGG	0.554867	4.2:+17663031	None:intergenic
AACAATGGCCGCATCATCCA+TGG	0.557317	4.2:-17663559	None:intergenic
TACTTGACTGGAGAGTTCCC+AGG	0.557425	4.2:-17663351	MS.gene028321:CDS
CTCTGGGAAAACACATCCCA+AGG	0.558618	4.2:+17663227	None:intergenic
AACTTGAAGTCATCCATAGC+AGG	0.560347	4.2:-17663266	MS.gene028321:CDS
TGGCAAGAATGCTCTGAGCA+TGG	0.562020	4.2:+17663097	None:intergenic
AGTTCCCAGGTGACTACGGA+TGG	0.562952	4.2:-17663338	MS.gene028321:CDS
AACTCTCCAGTCAAGTAAGA+CGG	0.563156	4.2:+17663357	None:intergenic
GACTACGGATGGGACACTGC+TGG	0.567506	4.2:-17663327	MS.gene028321:CDS
TCCCAATTCTTGGCTTGAAG+GGG	0.567590	4.2:+17663494	None:intergenic
GCCACTCAAGTTATCCTGAT+GGG	0.569103	4.2:-17663069	MS.gene028321:CDS
AGCAATACGGTAACCTTCAA+CGG	0.570535	4.2:+17663044	None:intergenic
GAAGGTTACCGTATTGCTGG+TGG	0.574077	4.2:-17663039	MS.gene028321:CDS
CTAAGTACTTAACACGGTCT+GGG	0.575188	4.2:+17663400	None:intergenic
GATAACTTGAGTGGCCCAGA+TGG	0.578481	4.2:+17663077	None:intergenic
TCAGGCTATTGTGACCGGAA+AGG	0.579894	4.2:-17662866	MS.gene028321:CDS
GGCCACTCAAGTTATCCTGA+TGG	0.591098	4.2:-17663070	MS.gene028321:CDS
TCTGAGCATGGACCAAACTT+GGG	0.597282	4.2:+17663109	None:intergenic
CTCTCCAGTCAAGTAAGACG+GGG	0.600570	4.2:+17663359	None:intergenic
TTGAAGTCATCCATAGCAGG+TGG	0.604782	4.2:-17663263	MS.gene028321:CDS
GGTGGTAGCAGACTTCCTCA+TGG	0.606241	4.2:+17663458	None:intergenic
GCCGTACCATGGGCTTCCTG+AGG	0.606264	4.2:+17663422	None:intergenic
GAATCCGAACATAGAGAACA+TGG	0.607900	4.2:+17662894	None:intergenic
GAGGCTGTATGGTTCAAGGC+CGG	0.609667	4.2:-17663174	MS.gene028321:CDS
CCCAGTCAACAACAACGCAT+GGG	0.613068	4.2:-17662809	MS.gene028321:CDS
GTTGTTGACCCACTTTACCC+AGG	0.622018	4.2:-17663003	MS.gene028321:CDS
CATTGCGAGACAAAAGCTCT+GGG	0.627524	4.2:+17663211	None:intergenic
GGTTGGTGAAGAGAGAGCCA+TGG	0.635995	4.2:+17663542	None:intergenic
TCCCATCAGGATAACTTGAG+TGG	0.636682	4.2:+17663068	None:intergenic
TGTCCCATCCGTAGTCACCT+GGG	0.637071	4.2:+17663334	None:intergenic
CGGATCCCAGATCTTTAGCG+AGG	0.637974	4.2:-17663154	MS.gene028321:CDS
GCCAAGAATTGGGAGCTGCA+AGG	0.640361	4.2:-17663485	MS.gene028321:CDS
AGAGAGAGCCATGGATGATG+CGG	0.641541	4.2:+17663551	None:intergenic
AAGGTTAAGGAACTCAAGAA+CGG	0.645128	4.2:-17662925	MS.gene028321:CDS
TAGCCTCCTCAGGAAGCCCA+TGG	0.650998	4.2:-17663428	MS.gene028321:CDS
GGATCCCAGATCTTTAGCGA+GGG	0.652580	4.2:-17663153	MS.gene028321:CDS
GTTCCCAGGTGACTACGGAT+GGG	0.662262	4.2:-17663337	MS.gene028321:CDS
TGATCGGCAAGGTTCTCCAA+AGG	0.663337	4.2:+17662841	None:intergenic
TGAAGTCATCCATAGCAGGT+GGG	0.676313	4.2:-17663262	MS.gene028321:CDS
GAGGGTGGACTTGACTACTT+GGG	0.679046	4.2:-17663135	MS.gene028321:CDS
GAGCTGCAAGGTTCACCATG+AGG	0.681403	4.2:-17663473	MS.gene028321:CDS
GGTCGGCAAGATGATCGGCA+AGG	0.690661	4.2:+17662830	None:intergenic
GGGTCAACAACTTCACCAAG+AGG	0.690756	4.2:+17663015	None:intergenic
GGGCCTAGCTGACGACCCAG+AGG	0.694133	4.2:-17662962	MS.gene028321:CDS
CAATGGTGTTAAATTCGGTG+AGG	0.700535	4.2:-17663193	MS.gene028321:CDS
GTTGACCCACTTTACCCAGG+AGG	0.722844	4.2:-17663000	MS.gene028321:CDS
TCTCCAGTCAAGTAAGACGG+GGG	0.735891	4.2:+17663360	None:intergenic
ATGGGCCTAAGTACTTAACA+CGG	0.752177	4.2:+17663394	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	AAGGTTAAGGAACTCAAGAA+CGG	-	chr4.2:17663407-17663426	MS.gene028321:CDS	35.0%
	TATGTTCGGATTCTTTGTTC+AGG	-	chr4.2:17663448-17663467	MS.gene028321:CDS	35.0%
	TTAGCCATGTTCTCTATGTT+CGG	-	chr4.2:17663434-17663453	MS.gene028321:CDS	35.0%
!	TATGGATGACTTCAAGTTCA+CGG	+	chr4.2:17663064-17663083	None:intergenic	35.0%
!	TCTCGCAATGGTGTTAAATT+CGG	-	chr4.2:17663134-17663153	MS.gene028321:CDS	35.0%
	AACTCTCCAGTCAAGTAAGA+CGG	+	chr4.2:17662978-17662997	None:intergenic	40.0%
	AACTTGAAGTCATCCATAGC+AGG	-	chr4.2:17663066-17663085	MS.gene028321:CDS	40.0%
	AGCAATACGGTAACCTTCAA+CGG	+	chr4.2:17663291-17663310	None:intergenic	40.0%
	ATGGGCCTAAGTACTTAACA+CGG	+	chr4.2:17662941-17662960	None:intergenic	40.0%
	CTAAGTACTTAACACGGTCT+GGG	+	chr4.2:17662935-17662954	None:intergenic	40.0%
	GAATCCGAACATAGAGAACA+TGG	+	chr4.2:17663441-17663460	None:intergenic	40.0%
	TTTCGCAGAGTTGAAGGTTA+AGG	-	chr4.2:17663394-17663413	MS.gene028321:CDS	40.0%
	TTTGTTCAGGCTATTGTGAC+CGG	-	chr4.2:17663461-17663480	MS.gene028321:CDS	40.0%
!	CAATGGTGTTAAATTCGGTG+AGG	-	chr4.2:17663139-17663158	MS.gene028321:CDS	40.0%
!	TTAAATTCGGTGAGGCTGTA+TGG	-	chr4.2:17663147-17663166	MS.gene028321:CDS	40.0%
	AACCCCTTCAAGCCAAGAAT+TGG	-	chr4.2:17662836-17662855	MS.gene028321:CDS	45.0%
	AAGTACTTAGGCCCATTCTC+TGG	-	chr4.2:17662945-17662964	MS.gene028321:CDS	45.0%
	ACCCCTTCAAGCCAAGAATT+GGG	-	chr4.2:17662837-17662856	MS.gene028321:CDS	45.0%
	ACTCTCCAGTCAAGTAAGAC+GGG	+	chr4.2:17662977-17662996	None:intergenic	45.0%
	CATTGCGAGACAAAAGCTCT+GGG	+	chr4.2:17663124-17663143	None:intergenic	45.0%
	CCAGACCGTGTTAAGTACTT+AGG	-	chr4.2:17662933-17662952	MS.gene028321:CDS	45.0%
	CCTAAGTACTTAACACGGTC+TGG	+	chr4.2:17662936-17662955	None:intergenic	45.0%
	CTACTTGGGTAACCCAAGTT+TGG	-	chr4.2:17663211-17663230	MS.gene028321:CDS	45.0%
	GCCACTCAAGTTATCCTGAT+GGG	-	chr4.2:17663263-17663282	MS.gene028321:CDS	45.0%
	GTTGAAGGTTACCGTATTGC+TGG	-	chr4.2:17663290-17663309	MS.gene028321:CDS	45.0%
	TATGCCACCAACTTTGTTCC+CGG	-	chr4.2:17663548-17663567	MS.gene028321:CDS	45.0%
	TCACTTTCCGGGAACAAAGT+TGG	+	chr4.2:17663558-17663577	None:intergenic	45.0%
	TCCCATCAGGATAACTTGAG+TGG	+	chr4.2:17663267-17663286	None:intergenic	45.0%
	TCTGAGCATGGACCAAACTT+GGG	+	chr4.2:17663226-17663245	None:intergenic	45.0%
	TGAAGTCATCCATAGCAGGT+GGG	-	chr4.2:17663070-17663089	MS.gene028321:CDS	45.0%
	TTGAAGTCATCCATAGCAGG+TGG	-	chr4.2:17663069-17663088	MS.gene028321:CDS	45.0%
!	CTCCCAATTCTTGGCTTGAA+GGG	+	chr4.2:17662842-17662861	None:intergenic	45.0%
!	GACTTCAAGTTCACGGTTCT+TGG	+	chr4.2:17663057-17663076	None:intergenic	45.0%
!	TCAGAGCATTCTTGCCATCT+GGG	-	chr4.2:17663241-17663260	MS.gene028321:CDS	45.0%
!	TCCCAATTCTTGGCTTGAAG+GGG	+	chr4.2:17662841-17662860	None:intergenic	45.0%
	ACCAAGAAAGTAGCCTCCTC+AGG	-	chr4.2:17662894-17662913	MS.gene028321:CDS	50.0%
	ACCCAGTCAACAACAACGCA+TGG	-	chr4.2:17663522-17663541	MS.gene028321:CDS	50.0%
	ACCTTGCAGCTCCCAATTCT+TGG	+	chr4.2:17662851-17662870	None:intergenic	50.0%
	AGAGAGAGCCATGGATGATG+CGG	+	chr4.2:17662784-17662803	None:intergenic	50.0%
	AGAGGCTTTCGCAGAGTTGA+AGG	-	chr4.2:17663388-17663407	MS.gene028321:CDS	50.0%
	CAAGAGGTCCACCAGCAATA+CGG	+	chr4.2:17663304-17663323	None:intergenic	50.0%
	CAGGCTATTGTGACCGGAAA+GGG	-	chr4.2:17663467-17663486	MS.gene028321:CDS	50.0%
	CCATTGCGAGACAAAAGCTC+TGG	+	chr4.2:17663125-17663144	None:intergenic	50.0%
	CCCAGTCAACAACAACGCAT+GGG	-	chr4.2:17663523-17663542	MS.gene028321:CDS	50.0%
	CTCTCCAGTCAAGTAAGACG+GGG	+	chr4.2:17662976-17662995	None:intergenic	50.0%
	CTCTGAGCATGGACCAAACT+TGG	+	chr4.2:17663227-17663246	None:intergenic	50.0%
	CTTTCCGGGAACAAAGTTGG+TGG	+	chr4.2:17663555-17663574	None:intergenic	50.0%
	GAAGGTTACCGTATTGCTGG+TGG	-	chr4.2:17663293-17663312	MS.gene028321:CDS	50.0%
	GATAACTTGAGTGGCCCAGA+TGG	+	chr4.2:17663258-17663277	None:intergenic	50.0%
	GGATCCCAGATCTTTAGCGA+GGG	-	chr4.2:17663179-17663198	MS.gene028321:CDS	50.0%
	GGCCACTCAAGTTATCCTGA+TGG	-	chr4.2:17663262-17663281	MS.gene028321:CDS	50.0%
	GGGTCAACAACTTCACCAAG+AGG	+	chr4.2:17663320-17663339	None:intergenic	50.0%
	GGTTCTTGGCGAATGTCTCT+GGG	+	chr4.2:17663043-17663062	None:intergenic	50.0%
	GTTCTCCAAAGGTCCCTTTC+CGG	+	chr4.2:17663483-17663502	None:intergenic	50.0%
	GTTGTTGACCCACTTTACCC+AGG	-	chr4.2:17663329-17663348	MS.gene028321:CDS	50.0%
	TACTTGACTGGAGAGTTCCC+AGG	-	chr4.2:17662981-17663000	MS.gene028321:CDS	50.0%
	TCAACTCTGCGAAAGCCTCT+GGG	+	chr4.2:17663388-17663407	None:intergenic	50.0%
	TCAGGCTATTGTGACCGGAA+AGG	-	chr4.2:17663466-17663485	MS.gene028321:CDS	50.0%
	TCCACCCTCGCTAAAGATCT+GGG	+	chr4.2:17663186-17663205	None:intergenic	50.0%
	TCTCCAGTCAAGTAAGACGG+GGG	+	chr4.2:17662975-17662994	None:intergenic	50.0%
	TGATCGGCAAGGTTCTCCAA+AGG	+	chr4.2:17663494-17663513	None:intergenic	50.0%
	TTCAACTCTGCGAAAGCCTC+TGG	+	chr4.2:17663389-17663408	None:intergenic	50.0%
!	CCAGAGCTTTTGTCTCGCAA+TGG	-	chr4.2:17663122-17663141	MS.gene028321:CDS	50.0%
!	CCCATGCGTTGTTGTTGACT+GGG	+	chr4.2:17663526-17663545	None:intergenic	50.0%
!	CTCAGAGCATTCTTGCCATC+TGG	-	chr4.2:17663240-17663259	MS.gene028321:CDS	50.0%
!	CTCGCTAAAGATCTGGGATC+CGG	+	chr4.2:17663180-17663199	None:intergenic	50.0%
!	CTCTGGGAAAACACATCCCA+AGG	+	chr4.2:17663108-17663127	None:intergenic	50.0%
!	GAGGGTGGACTTGACTACTT+GGG	-	chr4.2:17663197-17663216	MS.gene028321:CDS	50.0%
!	GCTCCCAATTCTTGGCTTGA+AGG	+	chr4.2:17662843-17662862	None:intergenic	50.0%
!	TCCTGAGGAGGCTACTTTCT+TGG	+	chr4.2:17662898-17662917	None:intergenic	50.0%
!	TGAGGAGGCTACTTTCTTGG+TGG	+	chr4.2:17662895-17662914	None:intergenic	50.0%
!	TGCGTTGTTGTTGACTGGGT+CGG	+	chr4.2:17663522-17663541	None:intergenic	50.0%
!	TGGCAAGAATGCTCTGAGCA+TGG	+	chr4.2:17663238-17663257	None:intergenic	50.0%
!!	CATAGCAGGTGGGCTATGTT+GGG	-	chr4.2:17663080-17663099	MS.gene028321:CDS	50.0%
!!	CTTGAAGGGGTTAGCTTGAC+TGG	+	chr4.2:17662828-17662847	None:intergenic	50.0%
!!	GGGAACAAAGTTGGTGGCAT+AGG	+	chr4.2:17663549-17663568	None:intergenic	50.0%
	AACCTTCAACGGCTCCCATC+AGG	+	chr4.2:17663280-17663299	None:intergenic	55.0%
	AAGCTGCCTCCTGGGTAAAG+TGG	+	chr4.2:17663341-17663360	None:intergenic	55.0%
	AATGGGTCAAAGCTGCCTCC+TGG	+	chr4.2:17663350-17663369	None:intergenic	55.0%
	AGCTGCCTCCTGGGTAAAGT+GGG	+	chr4.2:17663340-17663359	None:intergenic	55.0%
	AGTTCCCAGGTGACTACGGA+TGG	-	chr4.2:17662994-17663013	MS.gene028321:CDS	55.0%
	ATCCTGATGGGAGCCGTTGA+AGG	-	chr4.2:17663275-17663294	MS.gene028321:CDS	55.0%
	ATGGGTCAAAGCTGCCTCCT+GGG	+	chr4.2:17663349-17663368	None:intergenic	55.0%
	CCAACATAGCCCACCTGCTA+TGG	+	chr4.2:17663082-17663101	None:intergenic	55.0%
	CGGATCCCAGATCTTTAGCG+AGG	-	chr4.2:17663178-17663197	MS.gene028321:CDS	55.0%
	CGGTGAGGCTGTATGGTTCA+AGG	-	chr4.2:17663154-17663173	MS.gene028321:CDS	55.0%
	CGGTTCTTGGCGAATGTCTC+TGG	+	chr4.2:17663044-17663063	None:intergenic	55.0%
	CTCTCTTCACCAACCTTGGC+TGG	-	chr4.2:17662798-17662817	MS.gene028321:CDS	55.0%
	GACTGGGTCGGCAAGATGAT+CGG	+	chr4.2:17663510-17663529	None:intergenic	55.0%
	GAGCTGCAAGGTTCACCATG+AGG	-	chr4.2:17662859-17662878	MS.gene028321:CDS	55.0%
	GAGGCTGTATGGTTCAAGGC+CGG	-	chr4.2:17663158-17663177	MS.gene028321:CDS	55.0%
	GCCAAGAATTGGGAGCTGCA+AGG	-	chr4.2:17662847-17662866	MS.gene028321:CDS	55.0%
	GGAGAGTTCCCAGGTGACTA+CGG	-	chr4.2:17662990-17663009	MS.gene028321:CDS	55.0%
	GGCTCTCTCTTCACCAACCT+TGG	-	chr4.2:17662794-17662813	MS.gene028321:CDS	55.0%
	GGTGGTAGCAGACTTCCTCA+TGG	+	chr4.2:17662877-17662896	None:intergenic	55.0%
	GTCCACCCTCGCTAAAGATC+TGG	+	chr4.2:17663187-17663206	None:intergenic	55.0%
	GTTCCCAGGTGACTACGGAT+GGG	-	chr4.2:17662995-17663014	MS.gene028321:CDS	55.0%
	GTTGACCCACTTTACCCAGG+AGG	-	chr4.2:17663332-17663351	MS.gene028321:CDS	55.0%
	TCCCAGATCTTTAGCGAGGG+TGG	-	chr4.2:17663182-17663201	MS.gene028321:CDS	55.0%
	TCCTCAGGAAGCCCATGGTA+CGG	-	chr4.2:17662909-17662928	MS.gene028321:CDS	55.0%
	TGGGCTATGTTGGGAGCCTT+GGG	-	chr4.2:17663089-17663108	MS.gene028321:CDS	55.0%
	TGTCCCATCCGTAGTCACCT+GGG	+	chr4.2:17663001-17663020	None:intergenic	55.0%
	TGTGACCGGAAAGGGACCTT+TGG	-	chr4.2:17663475-17663494	MS.gene028321:CDS	55.0%
!	AGGAGGCAGCTTTGACCCAT+TGG	-	chr4.2:17663349-17663368	MS.gene028321:CDS	55.0%
!	CGAGGGTGGACTTGACTACT+TGG	-	chr4.2:17663196-17663215	MS.gene028321:CDS	55.0%
!	CGTATTGCTGGTGGACCTCT+TGG	-	chr4.2:17663302-17663321	MS.gene028321:CDS	55.0%
!	GCCCATGCGTTGTTGTTGAC+TGG	+	chr4.2:17663527-17663546	None:intergenic	55.0%
!	GGAGGCAGCTTTGACCCATT+GGG	-	chr4.2:17663350-17663369	MS.gene028321:CDS	55.0%
!!	CCATAGCAGGTGGGCTATGT+TGG	-	chr4.2:17663079-17663098	MS.gene028321:CDS	55.0%
!!	GGTTGGTGAAGAGAGAGCCA+TGG	+	chr4.2:17662793-17662812	None:intergenic	55.0%
	AAGCCTCTGGGTCGTCAGCT+AGG	+	chr4.2:17663376-17663395	None:intergenic	60.0%
	ACGGGGGCTCACCAGAGAAT+GGG	+	chr4.2:17662959-17662978	None:intergenic	60.0%
	GACTACGGATGGGACACTGC+TGG	-	chr4.2:17663005-17663024	MS.gene028321:CDS	60.0%
	GAGCCCCCGTCTTACTTGAC+TGG	-	chr4.2:17662969-17662988	MS.gene028321:CDS	60.0%
	GGTCGGCAAGATGATCGGCA+AGG	+	chr4.2:17663505-17663524	None:intergenic	60.0%
	GGTCGTCAGCTAGGCCCAAT+GGG	+	chr4.2:17663367-17663386	None:intergenic	60.0%
	GTACCATGGGCTTCCTGAGG+AGG	+	chr4.2:17662910-17662929	None:intergenic	60.0%
	GTGTCCCATCCGTAGTCACC+TGG	+	chr4.2:17663002-17663021	None:intergenic	60.0%
	TAGCCTCCTCAGGAAGCCCA+TGG	-	chr4.2:17662904-17662923	MS.gene028321:CDS	60.0%
!	GTGGGCTATGTTGGGAGCCT+TGG	-	chr4.2:17663088-17663107	MS.gene028321:CDS	60.0%
!!	ACTGGCTTGCCAGCCAAGGT+TGG	+	chr4.2:17662810-17662829	None:intergenic	60.0%
!!	CTTGACTGGCTTGCCAGCCA+AGG	+	chr4.2:17662814-17662833	None:intergenic	60.0%
	ACACGGTCTGGGCCGTACCA+TGG	+	chr4.2:17662924-17662943	None:intergenic	65.0%
	CACGGTCTGGGCCGTACCAT+GGG	+	chr4.2:17662923-17662942	None:intergenic	65.0%
	GACGGGGGCTCACCAGAGAA+TGG	+	chr4.2:17662960-17662979	None:intergenic	65.0%
	GCCGTACCATGGGCTTCCTG+AGG	+	chr4.2:17662913-17662932	None:intergenic	65.0%
	GGGTCGTCAGCTAGGCCCAA+TGG	+	chr4.2:17663368-17663387	None:intergenic	65.0%
	GGGCCTAGCTGACGACCCAG+AGG	-	chr4.2:17663370-17663389	MS.gene028321:CDS	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	17662777	17663577	17662777	ID=MS.gene028321
chr4.2	mRNA	17662777	17663577	17662777	ID=MS.gene028321.t1;Parent=MS.gene028321
chr4.2	exon	17662777	17663577	17662777	ID=MS.gene028321.t1.exon1;Parent=MS.gene028321.t1
chr4.2	CDS	17662777	17663577	17662777	ID=cds.MS.gene028321.t1;Parent=MS.gene028321.t1

Gene Sequence

>MS.gene028321

ATGGCCGCATCATCCATGGCTCTCTCTTCACCAACCTTGGCTGGCAAGCCAGTCAAGCTAACCCCTTCAAGCCAAGAATTGGGAGCTGCAAGGTTCACCATGAGGAAGTCTGCTACCACCAAGAAAGTAGCCTCCTCAGGAAGCCCATGGTACGGCCCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGCCCCCGTCTTACTTGACTGGAGAGTTCCCAGGTGACTACGGATGGGACACTGCTGGACTTTCTGCTGACCCAGAGACATTCGCCAAGAACCGTGAACTTGAAGTCATCCATAGCAGGTGGGCTATGTTGGGAGCCTTGGGATGTGTTTTCCCAGAGCTTTTGTCTCGCAATGGTGTTAAATTCGGTGAGGCTGTATGGTTCAAGGCCGGATCCCAGATCTTTAGCGAGGGTGGACTTGACTACTTGGGTAACCCAAGTTTGGTCCATGCTCAGAGCATTCTTGCCATCTGGGCCACTCAAGTTATCCTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAAGTTGTTGACCCACTTTACCCAGGAGGCAGCTTTGACCCATTGGGCCTAGCTGACGACCCAGAGGCTTTCGCAGAGTTGAAGGTTAAGGAACTCAAGAACGGTAGATTAGCCATGTTCTCTATGTTCGGATTCTTTGTTCAGGCTATTGTGACCGGAAAGGGACCTTTGGAGAACCTTGCCGATCATCTTGCCGACCCAGTCAACAACAACGCATGGGCCTATGCCACCAACTTTGTTCCCGGAAAGTGA

Protein sequence

>MS.gene028321.t1

MAASSMALSSPTLAGKPVKLTPSSQELGAARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK