AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene031028

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031028.t1 MTR_6g011890 98.868 265 3 0 1 265 1 265 0.0 533
MS.gene031028.t1 MTR_6g012080 94.340 265 15 0 1 265 1 265 0.0 518
MS.gene031028.t1 MTR_6g011880 95.472 265 12 0 1 265 1 265 0.0 503
MS.gene031028.t1 MTR_6g011870 95.472 265 12 0 1 265 1 265 0.0 503
MS.gene031028.t1 MTR_6g012110 94.340 265 15 0 1 265 1 265 0.0 501
MS.gene031028.t1 MTR_4g094605 90.226 266 25 1 1 265 1 266 2.76e-178 491
MS.gene031028.t1 MTR_5g097280 82.008 239 40 2 27 265 30 265 1.01e-147 414
MS.gene031028.t1 MTR_6g043600 78.868 265 20 3 1 265 1 229 3.22e-139 391
MS.gene031028.t1 MTR_2g081090 77.064 218 48 2 49 264 19 236 1.10e-118 339
MS.gene031028.t1 MTR_2g081090 77.064 218 48 2 49 264 46 263 1.68e-118 340
MS.gene031028.t1 MTR_6g060175 53.110 209 89 4 49 253 71 274 1.55e-64 203
MS.gene031028.t1 MTR_1g026550 50.917 218 96 6 47 253 105 322 9.57e-62 197
MS.gene031028.t1 MTR_6g060175 51.196 209 83 5 49 253 71 264 5.68e-58 186
MS.gene031028.t1 MTR_5g098785 40.553 217 94 9 62 253 63 269 1.54e-36 131
MS.gene031028.t1 MTR_6g033320 43.005 193 90 6 66 253 56 233 1.99e-36 129
MS.gene031028.t1 MTR_8g023790 34.686 271 125 12 9 262 28 263 7.97e-36 129
MS.gene031028.t1 MTR_5g098780 39.631 217 96 8 62 253 61 267 8.47e-36 129
MS.gene031028.t1 MTR_3g101670 38.424 203 93 6 64 249 66 253 4.37e-34 124
MS.gene031028.t1 MTR_2g042720 37.168 226 106 9 52 260 60 266 6.54e-32 118
MS.gene031028.t1 MTR_3g435460 35.533 197 103 5 65 252 62 243 4.87e-30 113
MS.gene031028.t1 MTR_1g026550 47.619 126 62 3 47 168 105 230 1.20e-28 109
MS.gene031028.t1 MTR_4g015570 43.293 164 78 7 91 253 132 281 1.06e-27 108
MS.gene031028.t1 MTR_3g435460 34.392 189 100 5 73 252 9 182 2.71e-26 102
MS.gene031028.t1 MTR_3g070340 44.872 156 65 8 92 243 136 274 1.15e-21 91.7
MS.gene031028.t1 MTR_5g098770 55.405 74 32 1 181 253 13 86 4.10e-21 85.5
MS.gene031028.t1 MTR_2g008610 32.850 207 89 8 66 242 73 259 1.76e-17 80.1
MS.gene031028.t1 MTR_2g436960 50.685 73 29 2 180 252 27 92 6.83e-13 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031028.t1 AT1G29930 87.640 267 31 2 1 265 1 267 8.43e-172 475
MS.gene031028.t1 AT1G29920 87.266 267 32 2 1 265 1 267 5.38e-171 473
MS.gene031028.t1 AT1G29910 87.266 267 32 2 1 265 1 267 5.38e-171 473
MS.gene031028.t1 AT2G34430 87.266 267 31 3 1 265 1 266 4.35e-169 468
MS.gene031028.t1 AT2G34420 86.517 267 32 3 1 265 1 265 9.66e-168 464
MS.gene031028.t1 AT3G27690 77.122 271 51 4 2 265 32 298 4.66e-151 424
MS.gene031028.t1 AT3G27690 77.323 269 50 4 4 265 2 266 1.57e-150 421
MS.gene031028.t1 AT2G05070 77.239 268 51 4 4 265 2 265 5.46e-150 419
MS.gene031028.t1 AT2G05100 76.866 268 52 4 4 265 2 265 5.57e-149 417
MS.gene031028.t1 AT2G05100 75.417 240 49 4 4 237 2 237 8.31e-127 363
MS.gene031028.t1 AT5G54270 68.248 274 64 7 3 264 2 264 1.17e-119 343
MS.gene031028.t1 AT1G76570 47.162 229 111 5 35 253 92 320 1.45e-62 199
MS.gene031028.t1 AT4G10340 51.675 209 92 4 49 253 62 265 2.66e-60 192
MS.gene031028.t1 AT3G54890 44.041 193 88 6 66 253 55 232 1.11e-37 133
MS.gene031028.t1 AT1G61520 41.014 217 93 9 62 253 59 265 5.65e-37 132
MS.gene031028.t1 AT1G61520 41.014 217 93 9 62 253 59 265 5.65e-37 132
MS.gene031028.t1 AT1G45474 38.767 227 122 6 32 249 24 242 1.09e-36 130
MS.gene031028.t1 AT1G45474 38.767 227 122 6 32 249 24 242 1.09e-36 130
MS.gene031028.t1 AT3G61470 38.158 228 99 10 52 262 50 252 1.97e-35 127
MS.gene031028.t1 AT1G61520 39.614 207 90 9 73 254 15 211 1.28e-33 122
MS.gene031028.t1 AT1G19150 36.283 226 108 8 52 260 63 269 3.45e-31 117
MS.gene031028.t1 AT3G47470 40.625 192 100 7 65 252 63 244 3.64e-31 116
MS.gene031028.t1 AT3G08940 35.769 260 105 12 39 253 37 279 4.35e-28 109
MS.gene031028.t1 AT5G01530 44.512 164 76 8 91 253 133 282 2.41e-27 107
MS.gene031028.t1 AT3G54890 38.220 191 68 6 66 253 55 198 4.74e-24 96.7
MS.gene031028.t1 AT3G54890 40.764 157 74 5 66 218 55 196 1.20e-23 95.5
MS.gene031028.t1 AT2G40100 41.935 155 70 7 92 243 135 272 5.53e-23 95.5
MS.gene031028.t1 AT1G15820 34.300 207 86 8 66 242 70 256 2.15e-18 82.4
MS.gene031028.t1 AT5G28450 51.316 76 29 3 189 262 99 168 1.00e-13 67.8
MS.gene031028.t1 AT3G54890 42.353 85 41 2 66 149 55 132 3.03e-11 60.8

Find 111 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCAAAGCATCCTTGCTATC+TGG 0.186162 6.2:+6252411 MS.gene031028:CDS
ATGGGCTATGTTGGGAGCTT+TGG 0.222130 6.2:+6252259 MS.gene031028:CDS
GTCTCTCTCTTCTTCATCAT+TGG 0.251189 6.2:+6251968 MS.gene031028:CDS
GCCCATGCATTGTTGTTAAC+TGG 0.254828 6.2:-6252695 None:intergenic
CTCTCTTCTTCATCATTGGT+TGG 0.292159 6.2:+6251972 MS.gene031028:CDS
TCCAGAAGGGACATTCTTCT+TGG 0.299028 6.2:-6252066 None:intergenic
TGGGCTATGTTGGGAGCTTT+GGG 0.306587 6.2:+6252260 MS.gene031028:CDS
TTTGTTCAAGCTGTTGTTAC+CGG 0.336742 6.2:+6252632 MS.gene031028:CDS
ATGCCAAGGTCTGGAGTAGA+TGG 0.346548 6.2:-6252014 None:intergenic
TTCAACTCTGCAAAAGCCTC+TGG 0.374792 6.2:-6252557 None:intergenic
TCTCTTCTTCATCATTGGTT+GGG 0.377078 6.2:+6251973 MS.gene031028:CDS
TACCTCACTGGTGAATTTCC+CGG 0.380935 6.2:+6252152 MS.gene031028:CDS
AAGTACTTGGGTCCATTCTC+TGG 0.385387 6.2:+6252116 MS.gene031028:CDS
CGAGGGTGGACTTGACTACT+TGG 0.394014 6.2:+6252367 MS.gene031028:CDS
CTTTCCAGGGGCAAAGTTTG+TGG 0.397939 6.2:-6252723 None:intergenic
ATTCTCTATAGGTCCTTTCC+CGG 0.406170 6.2:-6252651 None:intergenic
GGCTTGCCAAGTTATCTTGA+TGG 0.407725 6.2:+6252433 MS.gene031028:CDS
ATGTGTCTTCCCCGAGCTCT+TGG 0.408051 6.2:+6252283 MS.gene031028:CDS
CTTTGCGCATGGACTAGGCT+TGG 0.411535 6.2:-6252395 None:intergenic
CCCAAGTACTTGACACGGTC+TGG 0.412244 6.2:-6252104 None:intergenic
TCCAGACCGTGTCAAGTACT+TGG 0.414229 6.2:+6252103 MS.gene031028:CDS
CCCATGCATTGTTGTTAACT+GGG 0.415433 6.2:-6252694 None:intergenic
GCTCGCAATGGTGTCAAATT+CGG 0.416188 6.2:+6252305 MS.gene031028:CDS
TTTGCGCATGGACTAGGCTT+GGG 0.419297 6.2:-6252394 None:intergenic
GGATGCTTTGCGCATGGACT+AGG 0.419375 6.2:-6252400 None:intergenic
GGGTCGTCAGCGAGGCCTAA+TGG 0.426822 6.2:-6252536 None:intergenic
ATTCTACCCATGCCAAGGTC+TGG 0.427899 6.2:-6252023 None:intergenic
CGCATTGCTGGTGGACCTCT+CGG 0.431463 6.2:+6252473 MS.gene031028:CDS
GGTGAATTTCCCGGTGACTA+TGG 0.433430 6.2:+6252161 MS.gene031028:CDS
TTCTTCATCATTGGTTGGGA+AGG 0.438628 6.2:+6251977 MS.gene031028:CDS
CCATTGCGAGCCAAGAGCTC+GGG 0.440871 6.2:-6252293 None:intergenic
ACCAAGAAGAATGTCCCTTC+TGG 0.442942 6.2:+6252065 MS.gene031028:CDS
GTGGAGGGTTATCGCATTGC+TGG 0.443084 6.2:+6252461 MS.gene031028:CDS
CTCTGGATCGGCTGAAAGTC+CGG 0.447003 6.2:-6252195 None:intergenic
CAGCTCCCATCAAGATAACT+TGG 0.450852 6.2:-6252439 None:intergenic
GGTGGTAGCTTTGATCCATT+AGG 0.453823 6.2:+6252521 MS.gene031028:CDS
CACAGCAGATGGGCTATGTT+GGG 0.457058 6.2:+6252251 MS.gene031028:CDS
TGTGAATGACCTCAAGTTCA+CGG 0.457536 6.2:-6252232 None:intergenic
CAAGCTGTTGTTACCGGGAA+AGG 0.461298 6.2:+6252638 MS.gene031028:CDS
CGGTGAGGCTGTGTGGTTCA+AGG 0.463771 6.2:+6252325 MS.gene031028:CDS
CCCGAGCTCTTGGCTCGCAA+TGG 0.480396 6.2:+6252293 MS.gene031028:CDS
TCACAGCAGATGGGCTATGT+TGG 0.482497 6.2:+6252250 MS.gene031028:CDS
ACCATTGCGAGCCAAGAGCT+CGG 0.485012 6.2:-6252294 None:intergenic
AATTCACCAGTGAGGTAAGA+TGG 0.486152 6.2:-6252146 None:intergenic
AGAAGGGACATTCTTCTTGG+TGG 0.488000 6.2:-6252063 None:intergenic
AGGGGCAAAGTTTGTGGCAT+AGG 0.488535 6.2:-6252717 None:intergenic
AATTTCCCGGTGACTATGGT+TGG 0.494357 6.2:+6252165 MS.gene031028:CDS
ACCCAGTTAACAACAATGCA+TGG 0.495325 6.2:+6252693 MS.gene031028:CDS
GCTTGCCAAGTTATCTTGAT+GGG 0.500533 6.2:+6252434 MS.gene031028:CDS
GCAAAGCATCCTTGCTATCT+GGG 0.502996 6.2:+6252412 MS.gene031028:CDS
TTGAGGTCATTCACAGCAGA+TGG 0.504716 6.2:+6252240 MS.gene031028:CDS
TGAAGAAGAGAGAGACATTG+TGG 0.506264 6.2:-6251961 None:intergenic
ATTTCCCGGTGACTATGGTT+GGG 0.510615 6.2:+6252166 MS.gene031028:CDS
TATCTTGATGGGAGCTGTGG+AGG 0.520784 6.2:+6252445 MS.gene031028:CDS
TTTAGAGAAGGTCTCTGGAT+CGG 0.521497 6.2:-6252207 None:intergenic
GATGGAGCTTCACCAGAGAA+TGG 0.521781 6.2:-6252128 None:intergenic
TTGTTCAAGCTGTTGTTACC+GGG 0.527981 6.2:+6252633 MS.gene031028:CDS
AGACATTGTGGAAGCAGCCA+TGG 0.530079 6.2:-6251949 None:intergenic
TCCCCATCTACTCCAGACCT+TGG 0.531170 6.2:+6252011 MS.gene031028:CDS
GAGGCTGTGTGGTTCAAGGC+AGG 0.540019 6.2:+6252329 MS.gene031028:CDS
GACTATGGTTGGGACACTGC+CGG 0.543386 6.2:+6252176 MS.gene031028:CDS
AGCTACCACCTGGGTAGAGT+GGG 0.543872 6.2:-6252508 None:intergenic
TATGCCACAAACTTTGCCCC+TGG 0.544109 6.2:+6252719 MS.gene031028:CDS
TGGTCAGCAAGATTCTCTAT+AGG 0.546492 6.2:-6252662 None:intergenic
GAAGCTCCATCTTACCTCAC+TGG 0.557671 6.2:+6252140 MS.gene031028:CDS
AGTGTCCCAACCATAGTCAC+CGG 0.559531 6.2:-6252171 None:intergenic
ATCTTGATGGGAGCTGTGGA+GGG 0.561227 6.2:+6252446 MS.gene031028:CDS
CTTGGCAAGCCCAGATAGCA+AGG 0.562218 6.2:-6252421 None:intergenic
TCTCAAATCTTTAGCGAGGG+TGG 0.562867 6.2:+6252353 MS.gene031028:CDS
TGCCAAGGTCTGGAGTAGAT+GGG 0.564822 6.2:-6252013 None:intergenic
AAGCTACCACCTGGGTAGAG+TGG 0.568491 6.2:-6252509 None:intergenic
TGTTGTTAACTGGGTCCGCA+AGG 0.569379 6.2:-6252685 None:intergenic
TCAACTCTGCAAAAGCCTCT+GGG 0.572161 6.2:-6252556 None:intergenic
CCTTCTGGAAGCCCTTGGTA+CGG 0.581404 6.2:+6252080 MS.gene031028:CDS
AATGGATCAAAGCTACCACC+TGG 0.583802 6.2:-6252518 None:intergenic
TAGCAAGGATGCTTTGCGCA+TGG 0.585532 6.2:-6252406 None:intergenic
CACGGTCTGGACCGTACCAA+GGG 0.586153 6.2:-6252091 None:intergenic
TGGTGGACCTCTCGGTGAGG+TGG 0.589632 6.2:+6252481 MS.gene031028:CDS
ATCTACTCCAGACCTTGGCA+TGG 0.590591 6.2:+6252016 MS.gene031028:CDS
CCAGACCGTGTCAAGTACTT+GGG 0.592167 6.2:+6252104 MS.gene031028:CDS
CGTACCAAGGGCTTCCAGAA+GGG 0.593458 6.2:-6252079 None:intergenic
ACACGGTCTGGACCGTACCA+AGG 0.594364 6.2:-6252092 None:intergenic
GAGGGTTATCGCATTGCTGG+TGG 0.594512 6.2:+6252464 MS.gene031028:CDS
CCCAGTTAACAACAATGCAT+GGG 0.594599 6.2:+6252694 MS.gene031028:CDS
ATGTCCCTTCTGGAAGCCCT+TGG 0.597522 6.2:+6252075 MS.gene031028:CDS
AGTTATCTTGATGGGAGCTG+TGG 0.600805 6.2:+6252442 MS.gene031028:CDS
CCGTACCAAGGGCTTCCAGA+AGG 0.607787 6.2:-6252080 None:intergenic
GAATCCAAACATAGAAAACA+TGG 0.610696 6.2:-6252609 None:intergenic
GCCAAGGTCTGGAGTAGATG+GGG 0.613102 6.2:-6252012 None:intergenic
CATTGCGAGCCAAGAGCTCG+GGG 0.614226 6.2:-6252292 None:intergenic
TCTACTCCAGACCTTGGCAT+GGG 0.615529 6.2:+6252017 MS.gene031028:CDS
TGTTAACTGGGTCCGCAAGG+TGG 0.616453 6.2:-6252682 None:intergenic
TGGTGATTCTACCCATGCCA+AGG 0.616909 6.2:-6252028 None:intergenic
TGCTGGTGGACCTCTCGGTG+AGG 0.617179 6.2:+6252478 MS.gene031028:CDS
TGAGGTCATTCACAGCAGAT+GGG 0.621406 6.2:+6252241 MS.gene031028:CDS
AAGCCTCTGGGTCGTCAGCG+AGG 0.627327 6.2:-6252544 None:intergenic
AGGATCTCAAATCTTTAGCG+AGG 0.631672 6.2:+6252349 MS.gene031028:CDS
GTGTCCCAACCATAGTCACC+GGG 0.637236 6.2:-6252170 None:intergenic
GGATCTCAAATCTTTAGCGA+GGG 0.655185 6.2:+6252350 MS.gene031028:CDS
TCAAATTCGGTGAGGCTGTG+TGG 0.660843 6.2:+6252318 MS.gene031028:CDS
GAATCTTGCTGACCACCTTG+CGG 0.669848 6.2:+6252670 MS.gene031028:CDS
GTGGTCGACCCACTCTACCC+AGG 0.674935 6.2:+6252500 MS.gene031028:CDS
GAGGGTGGACTTGACTACTT+GGG 0.679046 6.2:+6252368 MS.gene031028:CDS
CAATGGTGTCAAATTCGGTG+AGG 0.690024 6.2:+6252310 MS.gene031028:CDS
GGGTCGACCACCTCACCGAG+AGG 0.690074 6.2:-6252488 None:intergenic
AGGCCTCGCTGACGACCCAG+AGG 0.694133 6.2:+6252541 MS.gene031028:CDS
ATGGATCAAAGCTACCACCT+GGG 0.710279 6.2:-6252517 None:intergenic
ATGGACCCAAGTACTTGACA+CGG 0.711188 6.2:-6252109 None:intergenic
CACCGGGAAATTCACCAGTG+AGG 0.714950 6.2:-6252154 None:intergenic
GTCGACCCACTCTACCCAGG+TGG 0.715669 6.2:+6252503 MS.gene031028:CDS
GCATGGGTAGAATCACCATG+AGG 0.770485 6.2:+6252033 MS.gene031028:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AAGGTGAAAGAACTCAAAAA+TGG + chr6.2:6252578-6252597 MS.gene031028:CDS 30.0%
GAATCCAAACATAGAAAACA+TGG - chr6.2:6252612-6252631 None:intergenic 30.0%
! TTAGCCATGTTTTCTATGTT+TGG + chr6.2:6252605-6252624 MS.gene031028:CDS 30.0%
TTTGTTCAAGCTGTTGTTAC+CGG + chr6.2:6252632-6252651 MS.gene031028:CDS 35.0%
! TCTCTTCTTCATCATTGGTT+GGG + chr6.2:6251973-6251992 MS.gene031028:CDS 35.0%
!! AAGTTCACGGTTTTTAGAGA+AGG - chr6.2:6252222-6252241 None:intergenic 35.0%
AATTCACCAGTGAGGTAAGA+TGG - chr6.2:6252149-6252168 None:intergenic 40.0%
ACCCAGTTAACAACAATGCA+TGG + chr6.2:6252693-6252712 MS.gene031028:CDS 40.0%
AGGATCTCAAATCTTTAGCG+AGG + chr6.2:6252349-6252368 MS.gene031028:CDS 40.0%
ATTCTCTATAGGTCCTTTCC+CGG - chr6.2:6252654-6252673 None:intergenic 40.0%
CCCAGTTAACAACAATGCAT+GGG + chr6.2:6252694-6252713 MS.gene031028:CDS 40.0%
CTCTCTTCTTCATCATTGGT+TGG + chr6.2:6251972-6251991 MS.gene031028:CDS 40.0%
GCTTGCCAAGTTATCTTGAT+GGG + chr6.2:6252434-6252453 MS.gene031028:CDS 40.0%
GGATCTCAAATCTTTAGCGA+GGG + chr6.2:6252350-6252369 MS.gene031028:CDS 40.0%
GTCTCTCTCTTCTTCATCAT+TGG + chr6.2:6251968-6251987 MS.gene031028:CDS 40.0%
TGAAGAAGAGAGAGACATTG+TGG - chr6.2:6251964-6251983 None:intergenic 40.0%
TGGTCAGCAAGATTCTCTAT+AGG - chr6.2:6252665-6252684 None:intergenic 40.0%
TGTGAATGACCTCAAGTTCA+CGG - chr6.2:6252235-6252254 None:intergenic 40.0%
TTGTTCAAGCTGTTGTTACC+GGG + chr6.2:6252633-6252652 MS.gene031028:CDS 40.0%
TTTAGAGAAGGTCTCTGGAT+CGG - chr6.2:6252210-6252229 None:intergenic 40.0%
! CCCATGCATTGTTGTTAACT+GGG - chr6.2:6252697-6252716 None:intergenic 40.0%
! CTCTAAAAACCGTGAACTTG+AGG + chr6.2:6252223-6252242 MS.gene031028:CDS 40.0%
! TTCTTCATCATTGGTTGGGA+AGG + chr6.2:6251977-6251996 MS.gene031028:CDS 40.0%
AAGTACTTGGGTCCATTCTC+TGG + chr6.2:6252116-6252135 MS.gene031028:CDS 45.0%
AATGGATCAAAGCTACCACC+TGG - chr6.2:6252521-6252540 None:intergenic 45.0%
AATTTCCCGGTGACTATGGT+TGG + chr6.2:6252165-6252184 MS.gene031028:CDS 45.0%
ACCAAGAAGAATGTCCCTTC+TGG + chr6.2:6252065-6252084 MS.gene031028:CDS 45.0%
AGAAGGGACATTCTTCTTGG+TGG - chr6.2:6252066-6252085 None:intergenic 45.0%
AGTTATCTTGATGGGAGCTG+TGG + chr6.2:6252442-6252461 MS.gene031028:CDS 45.0%
ATGGACCCAAGTACTTGACA+CGG - chr6.2:6252112-6252131 None:intergenic 45.0%
ATGGATCAAAGCTACCACCT+GGG - chr6.2:6252520-6252539 None:intergenic 45.0%
ATTTCCCGGTGACTATGGTT+GGG + chr6.2:6252166-6252185 MS.gene031028:CDS 45.0%
CAGCTCCCATCAAGATAACT+TGG - chr6.2:6252442-6252461 None:intergenic 45.0%
GGCTTGCCAAGTTATCTTGA+TGG + chr6.2:6252433-6252452 MS.gene031028:CDS 45.0%
TACCTCACTGGTGAATTTCC+CGG + chr6.2:6252152-6252171 MS.gene031028:CDS 45.0%
TCAACTCTGCAAAAGCCTCT+GGG - chr6.2:6252559-6252578 None:intergenic 45.0%
TCCAGAAGGGACATTCTTCT+TGG - chr6.2:6252069-6252088 None:intergenic 45.0%
TCTCAAATCTTTAGCGAGGG+TGG + chr6.2:6252353-6252372 MS.gene031028:CDS 45.0%
TGAGGTCATTCACAGCAGAT+GGG + chr6.2:6252241-6252260 MS.gene031028:CDS 45.0%
TTCAACTCTGCAAAAGCCTC+TGG - chr6.2:6252560-6252579 None:intergenic 45.0%
TTGAGGTCATTCACAGCAGA+TGG + chr6.2:6252240-6252259 MS.gene031028:CDS 45.0%
! AGAGGCTTTTGCAGAGTTGA+AGG + chr6.2:6252559-6252578 MS.gene031028:CDS 45.0%
! CAATGGTGTCAAATTCGGTG+AGG + chr6.2:6252310-6252329 MS.gene031028:CDS 45.0%
! GCAAAGCATCCTTGCTATCT+GGG + chr6.2:6252412-6252431 MS.gene031028:CDS 45.0%
! GCCCATGCATTGTTGTTAAC+TGG - chr6.2:6252698-6252717 None:intergenic 45.0%
! GCTCGCAATGGTGTCAAATT+CGG + chr6.2:6252305-6252324 MS.gene031028:CDS 45.0%
!! CGGTTTTTAGAGAAGGTCTC+TGG - chr6.2:6252215-6252234 None:intergenic 45.0%
!! CTTGGTGGTTGTTTTCCTCA+TGG - chr6.2:6252051-6252070 None:intergenic 45.0%
!! GGTGGTAGCTTTGATCCATT+AGG + chr6.2:6252521-6252540 MS.gene031028:CDS 45.0%
AGGGGCAAAGTTTGTGGCAT+AGG - chr6.2:6252720-6252739 None:intergenic 50.0%
AGTGTCCCAACCATAGTCAC+CGG - chr6.2:6252174-6252193 None:intergenic 50.0%
ATCTACTCCAGACCTTGGCA+TGG + chr6.2:6252016-6252035 MS.gene031028:CDS 50.0%
ATCTTGATGGGAGCTGTGGA+GGG + chr6.2:6252446-6252465 MS.gene031028:CDS 50.0%
ATTCTACCCATGCCAAGGTC+TGG - chr6.2:6252026-6252045 None:intergenic 50.0%
CAAGCTGTTGTTACCGGGAA+AGG + chr6.2:6252638-6252657 MS.gene031028:CDS 50.0%
CCAGACCGTGTCAAGTACTT+GGG + chr6.2:6252104-6252123 MS.gene031028:CDS 50.0%
CTTTCCAGGGGCAAAGTTTG+TGG - chr6.2:6252726-6252745 None:intergenic 50.0%
GAAGCTCCATCTTACCTCAC+TGG + chr6.2:6252140-6252159 MS.gene031028:CDS 50.0%
GAATCTTGCTGACCACCTTG+CGG + chr6.2:6252670-6252689 MS.gene031028:CDS 50.0%
GATGGAGCTTCACCAGAGAA+TGG - chr6.2:6252131-6252150 None:intergenic 50.0%
GCATGGGTAGAATCACCATG+AGG + chr6.2:6252033-6252052 MS.gene031028:CDS 50.0%
GGTGAATTTCCCGGTGACTA+TGG + chr6.2:6252161-6252180 MS.gene031028:CDS 50.0%
TAGCAAGGATGCTTTGCGCA+TGG - chr6.2:6252409-6252428 None:intergenic 50.0%
TATCTTGATGGGAGCTGTGG+AGG + chr6.2:6252445-6252464 MS.gene031028:CDS 50.0%
TATGCCACAAACTTTGCCCC+TGG + chr6.2:6252719-6252738 MS.gene031028:CDS 50.0%
TCCAGACCGTGTCAAGTACT+TGG + chr6.2:6252103-6252122 MS.gene031028:CDS 50.0%
TCTACTCCAGACCTTGGCAT+GGG + chr6.2:6252017-6252036 MS.gene031028:CDS 50.0%
TGGGCTATGTTGGGAGCTTT+GGG + chr6.2:6252260-6252279 MS.gene031028:CDS 50.0%
TGGTGATTCTACCCATGCCA+AGG - chr6.2:6252031-6252050 None:intergenic 50.0%
TGTTGTTAACTGGGTCCGCA+AGG - chr6.2:6252688-6252707 None:intergenic 50.0%
! ATGCCAAGGTCTGGAGTAGA+TGG - chr6.2:6252017-6252036 None:intergenic 50.0%
! ATGGGCTATGTTGGGAGCTT+TGG + chr6.2:6252259-6252278 MS.gene031028:CDS 50.0%
! CGCAAAGCATCCTTGCTATC+TGG + chr6.2:6252411-6252430 MS.gene031028:CDS 50.0%
! GAGGGTGGACTTGACTACTT+GGG + chr6.2:6252368-6252387 MS.gene031028:CDS 50.0%
! TCAAATTCGGTGAGGCTGTG+TGG + chr6.2:6252318-6252337 MS.gene031028:CDS 50.0%
! TGCCAAGGTCTGGAGTAGAT+GGG - chr6.2:6252016-6252035 None:intergenic 50.0%
!! CACAGCAGATGGGCTATGTT+GGG + chr6.2:6252251-6252270 MS.gene031028:CDS 50.0%
!! TCACAGCAGATGGGCTATGT+TGG + chr6.2:6252250-6252269 MS.gene031028:CDS 50.0%
!! TTTGCGCATGGACTAGGCTT+GGG - chr6.2:6252397-6252416 None:intergenic 50.0%
AAGCTACCACCTGGGTAGAG+TGG - chr6.2:6252512-6252531 None:intergenic 55.0%
ACCATTGCGAGCCAAGAGCT+CGG - chr6.2:6252297-6252316 None:intergenic 55.0%
AGCTACCACCTGGGTAGAGT+GGG - chr6.2:6252511-6252530 None:intergenic 55.0%
ATGTGTCTTCCCCGAGCTCT+TGG + chr6.2:6252283-6252302 MS.gene031028:CDS 55.0%
CACCGGGAAATTCACCAGTG+AGG - chr6.2:6252157-6252176 None:intergenic 55.0%
CCCAAGTACTTGACACGGTC+TGG - chr6.2:6252107-6252126 None:intergenic 55.0%
CGTACCAAGGGCTTCCAGAA+GGG - chr6.2:6252082-6252101 None:intergenic 55.0%
CTCTGGATCGGCTGAAAGTC+CGG - chr6.2:6252198-6252217 None:intergenic 55.0%
CTTGGCAAGCCCAGATAGCA+AGG - chr6.2:6252424-6252443 None:intergenic 55.0%
GACTATGGTTGGGACACTGC+CGG + chr6.2:6252176-6252195 MS.gene031028:CDS 55.0%
GAGGGTTATCGCATTGCTGG+TGG + chr6.2:6252464-6252483 MS.gene031028:CDS 55.0%
GGATGCTTTGCGCATGGACT+AGG - chr6.2:6252403-6252422 None:intergenic 55.0%
GTGGAGGGTTATCGCATTGC+TGG + chr6.2:6252461-6252480 MS.gene031028:CDS 55.0%
GTGTCCCAACCATAGTCACC+GGG - chr6.2:6252173-6252192 None:intergenic 55.0%
TCCCCATCTACTCCAGACCT+TGG + chr6.2:6252011-6252030 MS.gene031028:CDS 55.0%
TGTTAACTGGGTCCGCAAGG+TGG - chr6.2:6252685-6252704 None:intergenic 55.0%
! ATGTCCCTTCTGGAAGCCCT+TGG + chr6.2:6252075-6252094 MS.gene031028:CDS 55.0%
! CCTTCTGGAAGCCCTTGGTA+CGG + chr6.2:6252080-6252099 MS.gene031028:CDS 55.0%
! CGAGGGTGGACTTGACTACT+TGG + chr6.2:6252367-6252386 MS.gene031028:CDS 55.0%
! GCCAAGGTCTGGAGTAGATG+GGG - chr6.2:6252015-6252034 None:intergenic 55.0%
!! CTTTGCGCATGGACTAGGCT+TGG - chr6.2:6252398-6252417 None:intergenic 55.0%
ACACGGTCTGGACCGTACCA+AGG - chr6.2:6252095-6252114 None:intergenic 60.0%
CACGGTCTGGACCGTACCAA+GGG - chr6.2:6252094-6252113 None:intergenic 60.0%
CATTGCGAGCCAAGAGCTCG+GGG - chr6.2:6252295-6252314 None:intergenic 60.0%
CCATTGCGAGCCAAGAGCTC+GGG - chr6.2:6252296-6252315 None:intergenic 60.0%
CCGTACCAAGGGCTTCCAGA+AGG - chr6.2:6252083-6252102 None:intergenic 60.0%
CGGTGAGGCTGTGTGGTTCA+AGG + chr6.2:6252325-6252344 MS.gene031028:CDS 60.0%
GAGGCTGTGTGGTTCAAGGC+AGG + chr6.2:6252329-6252348 MS.gene031028:CDS 60.0%
! CGCATTGCTGGTGGACCTCT+CGG + chr6.2:6252473-6252492 MS.gene031028:CDS 60.0%
AAGCCTCTGGGTCGTCAGCG+AGG - chr6.2:6252547-6252566 None:intergenic 65.0%
GGGTCGTCAGCGAGGCCTAA+TGG - chr6.2:6252539-6252558 None:intergenic 65.0%
GTCGACCCACTCTACCCAGG+TGG + chr6.2:6252503-6252522 MS.gene031028:CDS 65.0%
GTGGTCGACCCACTCTACCC+AGG + chr6.2:6252500-6252519 MS.gene031028:CDS 65.0%
! CCCGAGCTCTTGGCTCGCAA+TGG + chr6.2:6252293-6252312 MS.gene031028:CDS 65.0%
! TGCTGGTGGACCTCTCGGTG+AGG + chr6.2:6252478-6252497 MS.gene031028:CDS 65.0%
! TGGTGGACCTCTCGGTGAGG+TGG + chr6.2:6252481-6252500 MS.gene031028:CDS 65.0%
AGGCCTCGCTGACGACCCAG+AGG + chr6.2:6252541-6252560 MS.gene031028:CDS 70.0%
GGGTCGACCACCTCACCGAG+AGG - chr6.2:6252491-6252510 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 6251951 6252748 6251951 ID=MS.gene031028
chr6.2 mRNA 6251951 6252748 6251951 ID=MS.gene031028.t1;Parent=MS.gene031028
chr6.2 exon 6251951 6252748 6251951 ID=MS.gene031028.t1.exon1;Parent=MS.gene031028.t1
chr6.2 CDS 6251951 6252748 6251951 ID=cds.MS.gene031028.t1;Parent=MS.gene031028.t1
Gene Sequence

>MS.gene031028

ATGGCTGCTTCCACAATGTCTCTCTCTTCTTCATCATTGGTTGGGAAGGCAATCAAGCTTTCCCCATCTACTCCAGACCTTGGCATGGGTAGAATCACCATGAGGAAAACAACCACCAAGAAGAATGTCCCTTCTGGAAGCCCTTGGTACGGTCCAGACCGTGTCAAGTACTTGGGTCCATTCTCTGGTGAAGCTCCATCTTACCTCACTGGTGAATTTCCCGGTGACTATGGTTGGGACACTGCCGGACTTTCAGCCGATCCAGAGACCTTCTCTAAAAACCGTGAACTTGAGGTCATTCACAGCAGATGGGCTATGTTGGGAGCTTTGGGATGTGTCTTCCCCGAGCTCTTGGCTCGCAATGGTGTCAAATTCGGTGAGGCTGTGTGGTTCAAGGCAGGATCTCAAATCTTTAGCGAGGGTGGACTTGACTACTTGGGTAACCCAAGCCTAGTCCATGCGCAAAGCATCCTTGCTATCTGGGCTTGCCAAGTTATCTTGATGGGAGCTGTGGAGGGTTATCGCATTGCTGGTGGACCTCTCGGTGAGGTGGTCGACCCACTCTACCCAGGTGGTAGCTTTGATCCATTAGGCCTCGCTGACGACCCAGAGGCTTTTGCAGAGTTGAAGGTGAAAGAACTCAAAAATGGTAGATTAGCCATGTTTTCTATGTTTGGATTCTTTGTTCAAGCTGTTGTTACCGGGAAAGGACCTATAGAGAATCTTGCTGACCACCTTGCGGACCCAGTTAACAACAATGCATGGGCCTATGCCACAAACTTTGCCCCTGGAAAGTGA
Protein sequence

>MS.gene031028.t1

MAASTMSLSSSSLVGKAIKLSPSTPDLGMGRITMRKTTTKKNVPSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAVVTGKGPIENLADHLADPVNNNAWAYATNFAPGK