Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20446.t1 | RHN50044.1 | 98.5 | 265 | 3 | 1 | 1 | 264 | 68 | 332 | 2.40E-146 | 528.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20446.t1 | P27495 | 91.0 | 267 | 21 | 2 | 1 | 264 | 1 | 267 | 3.7e-140 | 498.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20446.t1 | A0A072U6K7 | 98.5 | 265 | 3 | 1 | 1 | 264 | 1 | 265 | 1.7e-146 | 528.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene20446 | 0.836225 | 1.06E-56 | -1.69E-46 |
| MS.gene049173 | MS.gene20446 | 0.833017 | 6.79E-56 | -1.69E-46 |
| MS.gene049217 | MS.gene20446 | 0.821287 | 4.37E-53 | -1.69E-46 |
| MS.gene049222 | MS.gene20446 | 0.832729 | 8.01E-56 | -1.69E-46 |
| MS.gene049232 | MS.gene20446 | 0.851109 | 1.10E-60 | -1.69E-46 |
| MS.gene049285 | MS.gene20446 | 0.90122 | 3.34E-78 | -1.69E-46 |
| MS.gene049320 | MS.gene20446 | 0.929822 | 4.00E-93 | -1.69E-46 |
| MS.gene049600 | MS.gene20446 | 0.840246 | 9.76E-58 | -1.69E-46 |
| MS.gene049633 | MS.gene20446 | 0.806286 | 8.86E-50 | -1.69E-46 |
| MS.gene05010 | MS.gene20446 | 0.875295 | 3.45E-68 | -1.69E-46 |
| MS.gene050163 | MS.gene20446 | 0.885442 | 8.10E-72 | -1.69E-46 |
| MS.gene050165 | MS.gene20446 | 0.888994 | 3.60E-73 | -1.69E-46 |
| MS.gene050216 | MS.gene20446 | 0.815258 | 1.01E-51 | -1.69E-46 |
| MS.gene050323 | MS.gene20446 | 0.822124 | 2.80E-53 | -1.69E-46 |
| MS.gene050333 | MS.gene20446 | 0.875294 | 3.45E-68 | -1.69E-46 |
| MS.gene050496 | MS.gene20446 | 0.818187 | 2.23E-52 | -1.69E-46 |
| MS.gene050504 | MS.gene20446 | 0.888141 | 7.68E-73 | -1.69E-46 |
| MS.gene050518 | MS.gene20446 | 0.900958 | 4.35E-78 | -1.69E-46 |
| MS.gene050577 | MS.gene20446 | 0.839213 | 1.81E-57 | -1.69E-46 |
| MS.gene050612 | MS.gene20446 | 0.911194 | 8.02E-83 | -1.69E-46 |
| MS.gene050662 | MS.gene20446 | 0.804895 | 1.73E-49 | -1.69E-46 |
| MS.gene050675 | MS.gene20446 | 0.858752 | 6.64E-63 | -1.69E-46 |
| MS.gene050699 | MS.gene20446 | 0.880396 | 5.68E-70 | -1.69E-46 |
| MS.gene050772 | MS.gene20446 | 0.853925 | 1.73E-61 | -1.69E-46 |
| MS.gene050876 | MS.gene20446 | 0.836995 | 6.75E-57 | -1.69E-46 |
| MS.gene050986 | MS.gene20446 | 0.915295 | 6.98E-85 | -1.69E-46 |
| MS.gene05100 | MS.gene20446 | 0.853259 | 2.69E-61 | -1.69E-46 |
| MS.gene051228 | MS.gene20446 | 0.826352 | 2.84E-54 | -1.69E-46 |
| MS.gene051317 | MS.gene20446 | 0.822606 | 2.16E-53 | -1.69E-46 |
| MS.gene051509 | MS.gene20446 | 0.81547 | 9.09E-52 | -1.69E-46 |
| MS.gene051551 | MS.gene20446 | 0.8758 | 2.32E-68 | -1.69E-46 |
| MS.gene051810 | MS.gene20446 | 0.88863 | 4.98E-73 | -1.69E-46 |
| MS.gene051949 | MS.gene20446 | 0.841813 | 3.79E-58 | -1.69E-46 |
| MS.gene052164 | MS.gene20446 | 0.816158 | 6.39E-52 | -1.69E-46 |
| MS.gene052271 | MS.gene20446 | 0.858826 | 6.31E-63 | -1.69E-46 |
| MS.gene052482 | MS.gene20446 | 0.808808 | 2.58E-50 | -1.69E-46 |
| MS.gene052486 | MS.gene20446 | 0.810216 | 1.29E-50 | -1.69E-46 |
| MS.gene052822 | MS.gene20446 | 0.817653 | 2.95E-52 | -1.69E-46 |
| MS.gene052916 | MS.gene20446 | 0.850478 | 1.65E-60 | -1.69E-46 |
| MS.gene053207 | MS.gene20446 | 0.804405 | 2.19E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene20446 | 0.871518 | 6.43E-67 | -1.69E-46 |
| MS.gene053286 | MS.gene20446 | 0.87825 | 3.27E-69 | -1.69E-46 |
| MS.gene053574 | MS.gene20446 | 0.822463 | 2.34E-53 | -1.69E-46 |
| MS.gene053632 | MS.gene20446 | 0.830749 | 2.46E-55 | -1.69E-46 |
| MS.gene053916 | MS.gene20446 | 0.830571 | 2.72E-55 | -1.69E-46 |
| MS.gene054595 | MS.gene20446 | 0.809818 | 1.57E-50 | -1.69E-46 |
| MS.gene054600 | MS.gene20446 | 0.843692 | 1.20E-58 | -1.69E-46 |
| MS.gene054642 | MS.gene20446 | 0.903856 | 2.25E-79 | -1.69E-46 |
| MS.gene05470 | MS.gene20446 | 0.802176 | 6.35E-49 | -1.69E-46 |
| MS.gene054954 | MS.gene20446 | 0.912883 | 1.17E-83 | -1.69E-46 |
| MS.gene055212 | MS.gene20446 | 0.808545 | 2.94E-50 | -1.69E-46 |
| MS.gene055362 | MS.gene20446 | 0.909464 | 5.53E-82 | -1.69E-46 |
| MS.gene055397 | MS.gene20446 | 0.813296 | 2.75E-51 | -1.69E-46 |
| MS.gene055502 | MS.gene20446 | 0.848744 | 5.04E-60 | -1.69E-46 |
| MS.gene055577 | MS.gene20446 | 0.806645 | 7.44E-50 | -1.69E-46 |
| MS.gene055634 | MS.gene20446 | 0.852839 | 3.55E-61 | -1.69E-46 |
| MS.gene055636 | MS.gene20446 | 0.81447 | 1.52E-51 | -1.69E-46 |
| MS.gene055638 | MS.gene20446 | 0.837009 | 6.69E-57 | -1.69E-46 |
| MS.gene055722 | MS.gene20446 | 0.84111 | 5.80E-58 | -1.69E-46 |
| MS.gene055748 | MS.gene20446 | 0.834932 | 2.25E-56 | -1.69E-46 |
| MS.gene055750 | MS.gene20446 | 0.836457 | 9.25E-57 | -1.69E-46 |
| MS.gene055751 | MS.gene20446 | 0.850604 | 1.53E-60 | -1.69E-46 |
| MS.gene055776 | MS.gene20446 | 0.925906 | 9.72E-91 | -1.69E-46 |
| MS.gene055849 | MS.gene20446 | 0.83855 | 2.69E-57 | -1.69E-46 |
| MS.gene05589 | MS.gene20446 | 0.804881 | 1.75E-49 | -1.69E-46 |
| MS.gene05592 | MS.gene20446 | 0.806779 | 6.97E-50 | -1.69E-46 |
| MS.gene055956 | MS.gene20446 | -0.805892 | 1.07E-49 | -1.69E-46 |
| MS.gene056374 | MS.gene20446 | 0.875128 | 3.93E-68 | -1.69E-46 |
| MS.gene056504 | MS.gene20446 | 0.87714 | 7.98E-69 | -1.69E-46 |
| MS.gene056510 | MS.gene20446 | 0.881206 | 2.91E-70 | -1.69E-46 |
| MS.gene056657 | MS.gene20446 | 0.921661 | 2.69E-88 | -1.69E-46 |
| MS.gene056898 | MS.gene20446 | 0.803189 | 3.93E-49 | -1.69E-46 |
| MS.gene057129 | MS.gene20446 | 0.822077 | 2.87E-53 | -1.69E-46 |
| MS.gene057246 | MS.gene20446 | 0.801686 | 8.01E-49 | -1.69E-46 |
| MS.gene057331 | MS.gene20446 | 0.802452 | 5.57E-49 | -1.69E-46 |
| MS.gene057416 | MS.gene20446 | 0.816087 | 6.63E-52 | -1.69E-46 |
| MS.gene05753 | MS.gene20446 | 0.824559 | 7.56E-54 | -1.69E-46 |
| MS.gene058419 | MS.gene20446 | 0.899126 | 2.70E-77 | -1.69E-46 |
| MS.gene058544 | MS.gene20446 | 0.818771 | 1.65E-52 | -1.69E-46 |
| MS.gene058719 | MS.gene20446 | 0.822911 | 1.84E-53 | -1.69E-46 |
| MS.gene058723 | MS.gene20446 | 0.859234 | 4.76E-63 | -1.69E-46 |
| MS.gene058773 | MS.gene20446 | 0.859339 | 4.43E-63 | -1.69E-46 |
| MS.gene059022 | MS.gene20446 | 0.904017 | 1.90E-79 | -1.69E-46 |
| MS.gene059029 | MS.gene20446 | 0.814383 | 1.58E-51 | -1.69E-46 |
| MS.gene05913 | MS.gene20446 | 0.82726 | 1.73E-54 | -1.69E-46 |
| MS.gene059367 | MS.gene20446 | 0.812457 | 4.20E-51 | -1.69E-46 |
| MS.gene059677 | MS.gene20446 | 0.892591 | 1.38E-74 | -1.69E-46 |
| MS.gene059718 | MS.gene20446 | 0.854711 | 1.03E-61 | -1.69E-46 |
| MS.gene059756 | MS.gene20446 | 0.802708 | 4.94E-49 | -1.69E-46 |
| MS.gene059865 | MS.gene20446 | 0.892729 | 1.21E-74 | -1.69E-46 |
| MS.gene060337 | MS.gene20446 | -0.819009 | 1.45E-52 | -1.69E-46 |
| MS.gene060341 | MS.gene20446 | 0.805932 | 1.05E-49 | -1.69E-46 |
| MS.gene060482 | MS.gene20446 | 0.813364 | 2.66E-51 | -1.69E-46 |
| MS.gene060703 | MS.gene20446 | 0.86762 | 1.20E-65 | -1.69E-46 |
| MS.gene060728 | MS.gene20446 | 0.808845 | 2.54E-50 | -1.69E-46 |
| MS.gene060762 | MS.gene20446 | 0.83469 | 2.59E-56 | -1.69E-46 |
| MS.gene060778 | MS.gene20446 | 0.819499 | 1.12E-52 | -1.69E-46 |
| MS.gene06077 | MS.gene20446 | 0.841967 | 3.44E-58 | -1.69E-46 |
| MS.gene060982 | MS.gene20446 | 0.851637 | 7.80E-61 | -1.69E-46 |
| MS.gene061134 | MS.gene20446 | 0.817701 | 2.88E-52 | -1.69E-46 |
| MS.gene061150 | MS.gene20446 | 0.829956 | 3.85E-55 | -1.69E-46 |
| MS.gene061200 | MS.gene20446 | 0.807079 | 6.02E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene20446 | MS.gene36470 | PPI |
| MS.gene20446 | MS.gene031355 | PPI |
| MS.gene20446 | MS.gene20445 | PPI |
| MS.gene20446 | MS.gene99767 | PPI |
| MS.gene20446 | MS.gene20443 | PPI |
| MS.gene20446 | MS.gene20444 | PPI |
| MS.gene20446 | MS.gene81230 | PPI |
| MS.gene20446 | MS.gene023132 | PPI |
| MS.gene20446 | MS.gene38046 | PPI |
| MS.gene20446 | MS.gene020883 | PPI |
| MS.gene20446 | MS.gene031028 | PPI |
| MS.gene36470 | MS.gene20446 | PPI |
| MS.gene20446 | MS.gene028321 | PPI |
| MS.gene20446 | MS.gene031030 | PPI |
| MS.gene20446 | MS.gene35137 | PPI |
| MS.gene20446 | MS.gene93362 | PPI |
| MS.gene20446 | MS.gene88379 | PPI |
| MS.gene20446 | MS.gene03545 | PPI |
| MS.gene20446 | MS.gene38214 | PPI |
| MS.gene20446 | MS.gene031016 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20446.t1 | MTR_6g011880 | 98.491 | 265 | 3 | 1 | 1 | 264 | 1 | 265 | 0.0 | 527 |
| MS.gene20446.t1 | MTR_6g011870 | 98.491 | 265 | 3 | 1 | 1 | 264 | 1 | 265 | 0.0 | 526 |
| MS.gene20446.t1 | MTR_6g012080 | 92.453 | 265 | 19 | 1 | 1 | 264 | 1 | 265 | 0.0 | 503 |
| MS.gene20446.t1 | MTR_6g011890 | 95.094 | 265 | 12 | 1 | 1 | 264 | 1 | 265 | 0.0 | 500 |
| MS.gene20446.t1 | MTR_6g012110 | 92.830 | 265 | 18 | 1 | 1 | 264 | 1 | 265 | 2.01e-177 | 489 |
| MS.gene20446.t1 | MTR_4g094605 | 90.602 | 266 | 23 | 2 | 1 | 264 | 1 | 266 | 4.40e-177 | 488 |
| MS.gene20446.t1 | MTR_5g097280 | 76.404 | 267 | 54 | 4 | 4 | 264 | 2 | 265 | 3.97e-149 | 417 |
| MS.gene20446.t1 | MTR_6g043600 | 79.167 | 264 | 20 | 3 | 1 | 264 | 1 | 229 | 8.60e-140 | 392 |
| MS.gene20446.t1 | MTR_2g081090 | 70.120 | 251 | 63 | 3 | 15 | 263 | 23 | 263 | 2.78e-119 | 342 |
| MS.gene20446.t1 | MTR_2g081090 | 77.523 | 218 | 47 | 2 | 48 | 263 | 19 | 236 | 3.75e-119 | 340 |
| MS.gene20446.t1 | MTR_6g060175 | 53.589 | 209 | 88 | 4 | 48 | 252 | 71 | 274 | 3.16e-65 | 205 |
| MS.gene20446.t1 | MTR_1g026550 | 45.038 | 262 | 130 | 8 | 4 | 252 | 62 | 322 | 1.73e-63 | 202 |
| MS.gene20446.t1 | MTR_6g060175 | 51.675 | 209 | 82 | 5 | 48 | 252 | 71 | 264 | 9.23e-59 | 188 |
| MS.gene20446.t1 | MTR_8g023790 | 35.926 | 270 | 122 | 12 | 9 | 261 | 28 | 263 | 4.52e-38 | 134 |
| MS.gene20446.t1 | MTR_5g098785 | 40.553 | 217 | 94 | 9 | 61 | 252 | 63 | 269 | 4.71e-37 | 132 |
| MS.gene20446.t1 | MTR_6g033320 | 43.005 | 193 | 90 | 6 | 65 | 252 | 56 | 233 | 1.96e-36 | 129 |
| MS.gene20446.t1 | MTR_5g098780 | 36.397 | 272 | 124 | 11 | 20 | 252 | 6 | 267 | 2.10e-36 | 130 |
| MS.gene20446.t1 | MTR_3g101670 | 38.424 | 203 | 93 | 6 | 63 | 248 | 66 | 253 | 2.09e-34 | 125 |
| MS.gene20446.t1 | MTR_2g042720 | 36.726 | 226 | 107 | 9 | 51 | 259 | 60 | 266 | 4.84e-32 | 119 |
| MS.gene20446.t1 | MTR_3g435460 | 35.533 | 197 | 103 | 5 | 64 | 251 | 62 | 243 | 3.43e-30 | 114 |
| MS.gene20446.t1 | MTR_1g026550 | 42.484 | 153 | 83 | 4 | 19 | 167 | 79 | 230 | 7.79e-30 | 112 |
| MS.gene20446.t1 | MTR_4g015570 | 33.106 | 293 | 122 | 12 | 11 | 252 | 12 | 281 | 3.42e-28 | 109 |
| MS.gene20446.t1 | MTR_3g435460 | 34.392 | 189 | 100 | 5 | 72 | 251 | 9 | 182 | 2.08e-26 | 102 |
| MS.gene20446.t1 | MTR_5g098770 | 55.405 | 74 | 32 | 1 | 180 | 252 | 13 | 86 | 1.62e-21 | 86.7 |
| MS.gene20446.t1 | MTR_3g070340 | 45.161 | 155 | 64 | 8 | 92 | 242 | 137 | 274 | 2.73e-21 | 90.9 |
| MS.gene20446.t1 | MTR_2g008610 | 31.884 | 207 | 91 | 7 | 65 | 241 | 73 | 259 | 3.66e-17 | 79.0 |
| MS.gene20446.t1 | MTR_2g436960 | 50.685 | 73 | 29 | 2 | 179 | 251 | 27 | 92 | 7.32e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20446.t1 | AT1G29930 | 88.764 | 267 | 27 | 2 | 1 | 264 | 1 | 267 | 1.80e-172 | 476 |
| MS.gene20446.t1 | AT1G29920 | 88.390 | 267 | 28 | 2 | 1 | 264 | 1 | 267 | 8.46e-172 | 474 |
| MS.gene20446.t1 | AT1G29910 | 88.390 | 267 | 28 | 2 | 1 | 264 | 1 | 267 | 8.46e-172 | 474 |
| MS.gene20446.t1 | AT2G34420 | 87.547 | 265 | 32 | 1 | 1 | 264 | 1 | 265 | 5.02e-170 | 470 |
| MS.gene20446.t1 | AT2G34430 | 87.266 | 267 | 30 | 3 | 1 | 264 | 1 | 266 | 2.55e-168 | 466 |
| MS.gene20446.t1 | AT3G27690 | 78.598 | 271 | 46 | 4 | 2 | 264 | 32 | 298 | 2.72e-154 | 432 |
| MS.gene20446.t1 | AT3G27690 | 78.810 | 269 | 45 | 4 | 4 | 264 | 2 | 266 | 1.48e-153 | 429 |
| MS.gene20446.t1 | AT2G05070 | 79.478 | 268 | 44 | 4 | 4 | 264 | 2 | 265 | 1.72e-153 | 428 |
| MS.gene20446.t1 | AT2G05100 | 79.104 | 268 | 45 | 4 | 4 | 264 | 2 | 265 | 5.87e-153 | 427 |
| MS.gene20446.t1 | AT2G05100 | 77.917 | 240 | 42 | 4 | 4 | 236 | 2 | 237 | 1.58e-130 | 372 |
| MS.gene20446.t1 | AT5G54270 | 69.057 | 265 | 69 | 6 | 10 | 263 | 2 | 264 | 3.02e-121 | 347 |
| MS.gene20446.t1 | AT1G76570 | 47.598 | 229 | 110 | 5 | 34 | 252 | 92 | 320 | 3.71e-63 | 201 |
| MS.gene20446.t1 | AT4G10340 | 52.153 | 209 | 91 | 4 | 48 | 252 | 62 | 265 | 1.50e-61 | 196 |
| MS.gene20446.t1 | AT3G54890 | 44.041 | 193 | 88 | 6 | 65 | 252 | 55 | 232 | 1.17e-37 | 133 |
| MS.gene20446.t1 | AT1G61520 | 41.014 | 217 | 93 | 9 | 61 | 252 | 59 | 265 | 1.29e-37 | 134 |
| MS.gene20446.t1 | AT1G61520 | 41.014 | 217 | 93 | 9 | 61 | 252 | 59 | 265 | 1.29e-37 | 134 |
| MS.gene20446.t1 | AT1G45474 | 38.326 | 227 | 123 | 6 | 31 | 248 | 24 | 242 | 4.53e-37 | 132 |
| MS.gene20446.t1 | AT1G45474 | 38.326 | 227 | 123 | 6 | 31 | 248 | 24 | 242 | 4.53e-37 | 132 |
| MS.gene20446.t1 | AT3G61470 | 38.596 | 228 | 98 | 10 | 51 | 261 | 50 | 252 | 5.03e-36 | 129 |
| MS.gene20446.t1 | AT1G61520 | 39.614 | 207 | 90 | 9 | 72 | 253 | 15 | 211 | 3.39e-34 | 123 |
| MS.gene20446.t1 | AT1G19150 | 32.584 | 267 | 135 | 8 | 9 | 259 | 32 | 269 | 1.82e-31 | 117 |
| MS.gene20446.t1 | AT3G47470 | 40.625 | 192 | 100 | 7 | 64 | 251 | 63 | 244 | 2.59e-31 | 116 |
| MS.gene20446.t1 | AT3G08940 | 35.769 | 260 | 105 | 12 | 38 | 252 | 37 | 279 | 2.18e-28 | 110 |
| MS.gene20446.t1 | AT5G01530 | 37.339 | 233 | 88 | 10 | 64 | 252 | 64 | 282 | 1.50e-27 | 107 |
| MS.gene20446.t1 | AT3G54890 | 40.764 | 157 | 74 | 5 | 65 | 217 | 55 | 196 | 8.06e-24 | 96.3 |
| MS.gene20446.t1 | AT3G54890 | 38.220 | 191 | 68 | 6 | 65 | 252 | 55 | 198 | 9.34e-24 | 95.9 |
| MS.gene20446.t1 | AT2G40100 | 42.208 | 154 | 69 | 7 | 92 | 242 | 136 | 272 | 4.41e-23 | 95.5 |
| MS.gene20446.t1 | AT1G15820 | 33.333 | 207 | 88 | 7 | 65 | 241 | 70 | 256 | 3.73e-18 | 82.0 |
| MS.gene20446.t1 | AT5G28450 | 52.632 | 76 | 28 | 3 | 188 | 261 | 99 | 168 | 4.82e-14 | 68.9 |
| MS.gene20446.t1 | AT3G54890 | 42.353 | 85 | 41 | 2 | 65 | 148 | 55 | 132 | 3.48e-11 | 60.8 |
Find 112 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCCCCATCCACTCAAAT+TGG | 0.177035 | 6.3:+6549679 | MS.gene20446:CDS |
| CACAAAGCATCCTTGCTATA+TGG | 0.212556 | 6.3:+6550079 | MS.gene20446:CDS |
| GGCTTGCCAAGTTATCTTAA+TGG | 0.265887 | 6.3:+6550101 | MS.gene20446:CDS |
| TTGGCTATGTTCTCTATGTT+TGG | 0.284149 | 6.3:+6550273 | MS.gene20446:CDS |
| GCCCAAGCATTGTTGTTAAC+TGG | 0.297738 | 6.3:-6550363 | None:intergenic |
| GTTCTCGATGGGTCCCTTTC+CGG | 0.308348 | 6.3:-6550319 | None:intergenic |
| ATGGGCTATGTTGGGTGCCT+TGG | 0.311551 | 6.3:+6549927 | MS.gene20446:CDS |
| TCCAGATGGAACGGACTTCT+TGG | 0.336432 | 6.3:-6549734 | None:intergenic |
| TGAGGGTGGGCTTGACTACT+TGG | 0.346197 | 6.3:+6550035 | MS.gene20446:CDS |
| TCGAGGTCATCCACAGTAGA+TGG | 0.351194 | 6.3:+6549908 | MS.gene20446:CDS |
| TCTCGCAATGGTGTCAAATT+CGG | 0.351371 | 6.3:+6549973 | MS.gene20446:CDS |
| AGGTGGTAGCTTTGACCCCT+TGG | 0.355606 | 6.3:+6550188 | MS.gene20446:CDS |
| TTTCCCCATCCACTCAAATT+GGG | 0.360849 | 6.3:+6549680 | MS.gene20446:CDS |
| CTCTCTTCATCATCATTTGT+CGG | 0.381816 | 6.3:+6549643 | MS.gene20446:CDS |
| AAGTACTTGGGCCCATTCTC+TGG | 0.386535 | 6.3:+6549784 | MS.gene20446:CDS |
| CTTTGTGCATGGACTAGACT+TGG | 0.388090 | 6.3:-6550063 | None:intergenic |
| GCTTGCCAAGTTATCTTAAT+GGG | 0.390449 | 6.3:+6550102 | MS.gene20446:CDS |
| TGGGCTATGTTGGGTGCCTT+GGG | 0.394640 | 6.3:+6549928 | MS.gene20446:CDS |
| CCCAAGTACTTTACACGGTC+TGG | 0.404345 | 6.3:-6549772 | None:intergenic |
| GGTGGTAGCTTTGACCCCTT+GGG | 0.407362 | 6.3:+6550189 | MS.gene20446:CDS |
| GTGGAGGGTTACCGTATTGC+TGG | 0.409352 | 6.3:+6550129 | MS.gene20446:CDS |
| ATCCAGTTAACAACAATGCT+TGG | 0.417976 | 6.3:+6550361 | MS.gene20446:CDS |
| ACCAAGAAGTCCGTTCCATC+TGG | 0.421900 | 6.3:+6549733 | MS.gene20446:CDS |
| GGGATCTTCGGCAAGGCCCA+AGG | 0.428917 | 6.3:-6550205 | None:intergenic |
| TCAAATTCGGCGAGGCTGTA+TGG | 0.429918 | 6.3:+6549986 | MS.gene20446:CDS |
| TACGCCACAAACTTTGCTCC+TGG | 0.439316 | 6.3:+6550387 | MS.gene20446:CDS |
| CAAGCCATTGTGACCGGAAA+GGG | 0.439671 | 6.3:+6550306 | MS.gene20446:CDS |
| ACAAAGCATCCTTGCTATAT+GGG | 0.439706 | 6.3:+6550080 | MS.gene20446:CDS |
| CCCACCCCAATTTGAGTGGA+TGG | 0.439774 | 6.3:-6549685 | None:intergenic |
| CACAGTAGATGGGCTATGTT+GGG | 0.449424 | 6.3:+6549919 | MS.gene20446:CDS |
| TCCAGACCGTGTAAAGTACT+TGG | 0.449790 | 6.3:+6549771 | MS.gene20446:CDS |
| TCTCTTCATCATCATTTGTC+GGG | 0.450021 | 6.3:+6549644 | MS.gene20446:CDS |
| TGCAAAAGCCTCGGGATCTT+CGG | 0.455489 | 6.3:-6550217 | None:intergenic |
| TCCAGTTAACAACAATGCTT+GGG | 0.462972 | 6.3:+6550362 | MS.gene20446:CDS |
| AATTCACCGGTGAGGTAGGA+TGG | 0.463415 | 6.3:-6549814 | None:intergenic |
| TTCGTTCAAGCCATTGTGAC+CGG | 0.464946 | 6.3:+6550300 | MS.gene20446:CDS |
| CAGCGCCCATTAAGATAACT+TGG | 0.465592 | 6.3:-6550107 | None:intergenic |
| CCACAGTAGATGGGCTATGT+TGG | 0.471821 | 6.3:+6549918 | MS.gene20446:CDS |
| GGATCTTCGGCAAGGCCCAA+GGG | 0.479901 | 6.3:-6550204 | None:intergenic |
| CGTATTGCTGGTGGACCTCT+CGG | 0.481118 | 6.3:+6550141 | MS.gene20446:CDS |
| CGGCGAGGCTGTATGGTTCA+AGG | 0.482570 | 6.3:+6549993 | MS.gene20446:CDS |
| TTCAACTCTGCAAAAGCCTC+GGG | 0.483017 | 6.3:-6550225 | None:intergenic |
| CCACCCCAATTTGAGTGGAT+GGG | 0.485135 | 6.3:-6549684 | None:intergenic |
| GTGTCCCAACCGTAGTCACC+AGG | 0.493454 | 6.3:-6549838 | None:intergenic |
| GATGGGGCTTCACCAGAGAA+TGG | 0.493907 | 6.3:-6549796 | None:intergenic |
| CCATTGCGAGATAAGAGCTC+AGG | 0.496373 | 6.3:-6549961 | None:intergenic |
| CACGGTCTGGACCGTACCAT+GGG | 0.497947 | 6.3:-6549759 | None:intergenic |
| ACACGGTCTGGACCGTACCA+TGG | 0.499865 | 6.3:-6549760 | None:intergenic |
| CTTCAACTCTGCAAAAGCCT+CGG | 0.505325 | 6.3:-6550226 | None:intergenic |
| AATTCCCTGGTGACTACGGT+TGG | 0.508396 | 6.3:+6549833 | MS.gene20446:CDS |
| CACCCCAATTTGAGTGGATG+GGG | 0.509830 | 6.3:-6549683 | None:intergenic |
| ATTCACCGGTGAGGTAGGAT+GGG | 0.517462 | 6.3:-6549813 | None:intergenic |
| TATCTTAATGGGCGCTGTGG+AGG | 0.518600 | 6.3:+6550113 | MS.gene20446:CDS |
| ATCTTAATGGGCGCTGTGGA+GGG | 0.524146 | 6.3:+6550114 | MS.gene20446:CDS |
| GGTGAATTCCCTGGTGACTA+CGG | 0.525854 | 6.3:+6549829 | MS.gene20446:CDS |
| ATGGGGCTTCACCAGAGAAT+GGG | 0.527156 | 6.3:-6549795 | None:intergenic |
| TTCATCATCATTTGTCGGGA+AGG | 0.536422 | 6.3:+6549648 | MS.gene20446:CDS |
| GTGGTCGGCGAGGTTCTCGA+TGG | 0.539736 | 6.3:-6550331 | None:intergenic |
| CCCATCCACTCAAATTGGGG+TGG | 0.539833 | 6.3:+6549684 | MS.gene20446:CDS |
| ATTCCCTGGTGACTACGGTT+GGG | 0.544013 | 6.3:+6549834 | MS.gene20446:CDS |
| GGGCCTTGCCGAAGATCCCG+AGG | 0.544664 | 6.3:+6550209 | MS.gene20446:CDS |
| CGAGAGGTCCACCAGCAATA+CGG | 0.545357 | 6.3:-6550140 | None:intergenic |
| TACCTCACCGGTGAATTCCC+TGG | 0.545647 | 6.3:+6549820 | MS.gene20446:CDS |
| TTCCCCATCCACTCAAATTG+GGG | 0.559064 | 6.3:+6549681 | MS.gene20446:CDS |
| CGAGGTCATCCACAGTAGAT+GGG | 0.559618 | 6.3:+6549909 | MS.gene20446:CDS |
| AGATGGAACGGACTTCTTGG+TGG | 0.570403 | 6.3:-6549731 | None:intergenic |
| GACTACGGTTGGGACACTGC+TGG | 0.570758 | 6.3:+6549844 | MS.gene20446:CDS |
| AAGCTACCACCTGGGTAGAG+TGG | 0.571165 | 6.3:-6550177 | None:intergenic |
| AAGGGGTCAAAGCTACCACC+TGG | 0.571916 | 6.3:-6550186 | None:intergenic |
| CCGTACCATGGGCTTCCAGA+TGG | 0.572064 | 6.3:-6549748 | None:intergenic |
| CCTGAGCTCTTATCTCGCAA+TGG | 0.578069 | 6.3:+6549961 | MS.gene20446:CDS |
| AGGGAATTCACCGGTGAGGT+AGG | 0.580879 | 6.3:-6549818 | None:intergenic |
| TCTTCCCACCCCAATTTGAG+TGG | 0.583180 | 6.3:-6549689 | None:intergenic |
| TAGCAAGGATGCTTTGTGCA+TGG | 0.585942 | 6.3:-6550074 | None:intergenic |
| TCAAGCCATTGTGACCGGAA+AGG | 0.590431 | 6.3:+6550305 | MS.gene20446:CDS |
| TTCACCGGTGAGGTAGGATG+GGG | 0.593559 | 6.3:-6549812 | None:intergenic |
| TGGTCGGCGAGGTTCTCGAT+GGG | 0.594498 | 6.3:-6550330 | None:intergenic |
| CCATCTGGAAGCCCATGGTA+CGG | 0.594832 | 6.3:+6549748 | MS.gene20446:CDS |
| CCATCCACTCAAATTGGGGT+GGG | 0.595690 | 6.3:+6549685 | MS.gene20446:CDS |
| GGGTCCCTTTCCGGTCACAA+TGG | 0.597127 | 6.3:-6550310 | None:intergenic |
| GACAAATGATGATGAAGAGA+GGG | 0.601365 | 6.3:-6549641 | None:intergenic |
| GAGGCTGTATGGTTCAAGGC+AGG | 0.603743 | 6.3:+6549997 | MS.gene20446:CDS |
| AACTGGATCAGCAAGGTGGT+CGG | 0.605178 | 6.3:-6550346 | None:intergenic |
| GAAGCCCCATCCTACCTCAC+CGG | 0.608563 | 6.3:+6549808 | MS.gene20446:CDS |
| CCATGGGCTTCCAGATGGAA+CGG | 0.611833 | 6.3:-6549743 | None:intergenic |
| AAGCCTCGGGATCTTCGGCA+AGG | 0.614309 | 6.3:-6550212 | None:intergenic |
| TTTGTGCATGGACTAGACTT+GGG | 0.616758 | 6.3:-6550062 | None:intergenic |
| CGACAAATGATGATGAAGAG+AGG | 0.619166 | 6.3:-6549642 | None:intergenic |
| AGTTATCTTAATGGGCGCTG+TGG | 0.619631 | 6.3:+6550110 | MS.gene20446:CDS |
| CCAGACCGTGTAAAGTACTT+GGG | 0.622049 | 6.3:+6549772 | MS.gene20446:CDS |
| GAGGGTGGGCTTGACTACTT+GGG | 0.623436 | 6.3:+6550036 | MS.gene20446:CDS |
| CCGTTCCATCTGGAAGCCCA+TGG | 0.628220 | 6.3:+6549743 | MS.gene20446:CDS |
| CATTGCGAGATAAGAGCTCA+GGG | 0.632574 | 6.3:-6549960 | None:intergenic |
| GATCTTCGGCAAGGCCCAAG+GGG | 0.635477 | 6.3:-6550203 | None:intergenic |
| CTTGGCAAGCCCATATAGCA+AGG | 0.638530 | 6.3:-6550089 | None:intergenic |
| GAGGGTTACCGTATTGCTGG+TGG | 0.648889 | 6.3:+6550132 | MS.gene20446:CDS |
| TGCTGGTGGACCTCTCGGTG+AGG | 0.651050 | 6.3:+6550146 | MS.gene20446:CDS |
| CCAACATAGCCCATCTACTG+TGG | 0.651695 | 6.3:-6549918 | None:intergenic |
| GATCAGCAAGGTGGTCGGCG+AGG | 0.658667 | 6.3:-6550341 | None:intergenic |
| CTCAGGGAAGACACATCCCA+AGG | 0.667407 | 6.3:-6549944 | None:intergenic |
| ATGGGCCCAAGTACTTTACA+CGG | 0.669098 | 6.3:-6549777 | None:intergenic |
| TGTTGTTAACTGGATCAGCA+AGG | 0.672175 | 6.3:-6550353 | None:intergenic |
| GTAGTCGATCCACTCTACCC+AGG | 0.681312 | 6.3:+6550168 | MS.gene20446:CDS |
| GTAGTCACCAGGGAATTCAC+CGG | 0.681771 | 6.3:-6549827 | None:intergenic |
| CACCAGGGAATTCACCGGTG+AGG | 0.682525 | 6.3:-6549822 | None:intergenic |
| TGTCCCAACCGTAGTCACCA+GGG | 0.690709 | 6.3:-6549837 | None:intergenic |
| GTCGATCCACTCTACCCAGG+TGG | 0.703962 | 6.3:+6550171 | MS.gene20446:CDS |
| CAATGGTGTCAAATTCGGCG+AGG | 0.704270 | 6.3:+6549978 | MS.gene20446:CDS |
| GGGTGGGAAGAGTCACAATG+AGG | 0.706667 | 6.3:+6549701 | MS.gene20446:CDS |
| AGGGGTCAAAGCTACCACCT+GGG | 0.707264 | 6.3:-6550185 | None:intergenic |
| TGTTAACTGGATCAGCAAGG+TGG | 0.716474 | 6.3:-6550350 | None:intergenic |
| GGATCGACTACCTCACCGAG+AGG | 0.751496 | 6.3:-6550156 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAGGTGAAAGAACTAAAAAA+TGG | + | chr6.3:6550246-6550265 | MS.gene20446:CDS | 25.0% |
| ! | TGAAAGAACTAAAAAATGGT+AGG | + | chr6.3:6550250-6550269 | MS.gene20446:CDS | 25.0% |
| AGAACTAAAAAATGGTAGGT+TGG | + | chr6.3:6550254-6550273 | MS.gene20446:CDS | 30.0% | |
| ATCCAGTTAACAACAATGCT+TGG | + | chr6.3:6550361-6550380 | MS.gene20446:CDS | 35.0% | |
| CTCTCTTCATCATCATTTGT+CGG | + | chr6.3:6549643-6549662 | MS.gene20446:CDS | 35.0% | |
| GCTTGCCAAGTTATCTTAAT+GGG | + | chr6.3:6550102-6550121 | MS.gene20446:CDS | 35.0% | |
| TCCAGTTAACAACAATGCTT+GGG | + | chr6.3:6550362-6550381 | MS.gene20446:CDS | 35.0% | |
| TCTCTTCATCATCATTTGTC+GGG | + | chr6.3:6549644-6549663 | MS.gene20446:CDS | 35.0% | |
| TTGGCTATGTTCTCTATGTT+TGG | + | chr6.3:6550273-6550292 | MS.gene20446:CDS | 35.0% | |
| ! | ACAAAGCATCCTTGCTATAT+GGG | + | chr6.3:6550080-6550099 | MS.gene20446:CDS | 35.0% |
| ! | GACAAATGATGATGAAGAGA+GGG | - | chr6.3:6549644-6549663 | None:intergenic | 35.0% |
| !!! | AGGATCCCAAATTTTTAGTG+AGG | + | chr6.3:6550017-6550036 | MS.gene20446:CDS | 35.0% |
| !!! | GATTTTTGGCAAATGTCTCT+GGG | - | chr6.3:6549882-6549901 | None:intergenic | 35.0% |
| !!! | GGATCCCAAATTTTTAGTGA+GGG | + | chr6.3:6550018-6550037 | MS.gene20446:CDS | 35.0% |
| CCCACCCTCACTAAAAATTT+GGG | - | chr6.3:6550025-6550044 | None:intergenic | 40.0% | |
| GGCTTGCCAAGTTATCTTAA+TGG | + | chr6.3:6550101-6550120 | MS.gene20446:CDS | 40.0% | |
| TGTTGTTAACTGGATCAGCA+AGG | - | chr6.3:6550356-6550375 | None:intergenic | 40.0% | |
| TTCATCATCATTTGTCGGGA+AGG | + | chr6.3:6549648-6549667 | MS.gene20446:CDS | 40.0% | |
| TTTCCCCATCCACTCAAATT+GGG | + | chr6.3:6549680-6549699 | MS.gene20446:CDS | 40.0% | |
| ! | CACAAAGCATCCTTGCTATA+TGG | + | chr6.3:6550079-6550098 | MS.gene20446:CDS | 40.0% |
| ! | CGACAAATGATGATGAAGAG+AGG | - | chr6.3:6549645-6549664 | None:intergenic | 40.0% |
| ! | TCTCGCAATGGTGTCAAATT+CGG | + | chr6.3:6549973-6549992 | MS.gene20446:CDS | 40.0% |
| ! | TTTTCCAGGAGCAAAGTTTG+TGG | - | chr6.3:6550394-6550413 | None:intergenic | 40.0% |
| !! | TTTGTGCATGGACTAGACTT+GGG | - | chr6.3:6550065-6550084 | None:intergenic | 40.0% |
| !!! | CCCAAATTTTTAGTGAGGGT+GGG | + | chr6.3:6550022-6550041 | MS.gene20446:CDS | 40.0% |
| !!! | CGATTTTTGGCAAATGTCTC+TGG | - | chr6.3:6549883-6549902 | None:intergenic | 40.0% |
| !!! | TCCCAAATTTTTAGTGAGGG+TGG | + | chr6.3:6550021-6550040 | MS.gene20446:CDS | 40.0% |
| ATGGGCCCAAGTACTTTACA+CGG | - | chr6.3:6549780-6549799 | None:intergenic | 45.0% | |
| CAGCGCCCATTAAGATAACT+TGG | - | chr6.3:6550110-6550129 | None:intergenic | 45.0% | |
| CATTGCGAGATAAGAGCTCA+GGG | - | chr6.3:6549963-6549982 | None:intergenic | 45.0% | |
| CTTCAACTCTGCAAAAGCCT+CGG | - | chr6.3:6550229-6550248 | None:intergenic | 45.0% | |
| CTTTCCCCATCCACTCAAAT+TGG | + | chr6.3:6549679-6549698 | MS.gene20446:CDS | 45.0% | |
| GCCCACCCTCACTAAAAATT+TGG | - | chr6.3:6550026-6550045 | None:intergenic | 45.0% | |
| TAGCAAGGATGCTTTGTGCA+TGG | - | chr6.3:6550077-6550096 | None:intergenic | 45.0% | |
| TGCCAAAAATCGTGAACTCG+AGG | + | chr6.3:6549891-6549910 | MS.gene20446:CDS | 45.0% | |
| TGTTAACTGGATCAGCAAGG+TGG | - | chr6.3:6550353-6550372 | None:intergenic | 45.0% | |
| TTCAACTCTGCAAAAGCCTC+GGG | - | chr6.3:6550228-6550247 | None:intergenic | 45.0% | |
| TTCCCCATCCACTCAAATTG+GGG | + | chr6.3:6549681-6549700 | MS.gene20446:CDS | 45.0% | |
| TTCGTTCAAGCCATTGTGAC+CGG | + | chr6.3:6550300-6550319 | MS.gene20446:CDS | 45.0% | |
| ! | AGTTATCTTAATGGGCGCTG+TGG | + | chr6.3:6550110-6550129 | MS.gene20446:CDS | 45.0% |
| ! | CCAGACCGTGTAAAGTACTT+GGG | + | chr6.3:6549772-6549791 | MS.gene20446:CDS | 45.0% |
| ! | GACCTCGAGTTCACGATTTT+TGG | - | chr6.3:6549896-6549915 | None:intergenic | 45.0% |
| ! | GCCCAAGCATTGTTGTTAAC+TGG | - | chr6.3:6550366-6550385 | None:intergenic | 45.0% |
| ! | TCCAGACCGTGTAAAGTACT+TGG | + | chr6.3:6549771-6549790 | MS.gene20446:CDS | 45.0% |
| !! | CACAGTAGATGGGCTATGTT+GGG | + | chr6.3:6549919-6549938 | MS.gene20446:CDS | 45.0% |
| !! | CTTTGTGCATGGACTAGACT+TGG | - | chr6.3:6550066-6550085 | None:intergenic | 45.0% |
| AACTGGATCAGCAAGGTGGT+CGG | - | chr6.3:6550349-6550368 | None:intergenic | 50.0% | |
| AAGTACTTGGGCCCATTCTC+TGG | + | chr6.3:6549784-6549803 | MS.gene20446:CDS | 50.0% | |
| AATTCACCGGTGAGGTAGGA+TGG | - | chr6.3:6549817-6549836 | None:intergenic | 50.0% | |
| AATTCCCTGGTGACTACGGT+TGG | + | chr6.3:6549833-6549852 | MS.gene20446:CDS | 50.0% | |
| ACCAAGAAGTCCGTTCCATC+TGG | + | chr6.3:6549733-6549752 | MS.gene20446:CDS | 50.0% | |
| ATGGGGCTTCACCAGAGAAT+GGG | - | chr6.3:6549798-6549817 | None:intergenic | 50.0% | |
| ATTCACCGGTGAGGTAGGAT+GGG | - | chr6.3:6549816-6549835 | None:intergenic | 50.0% | |
| ATTCCCTGGTGACTACGGTT+GGG | + | chr6.3:6549834-6549853 | MS.gene20446:CDS | 50.0% | |
| CAAGCCATTGTGACCGGAAA+GGG | + | chr6.3:6550306-6550325 | MS.gene20446:CDS | 50.0% | |
| CACCCCAATTTGAGTGGATG+GGG | - | chr6.3:6549686-6549705 | None:intergenic | 50.0% | |
| CCAACATAGCCCATCTACTG+TGG | - | chr6.3:6549921-6549940 | None:intergenic | 50.0% | |
| CCACCCCAATTTGAGTGGAT+GGG | - | chr6.3:6549687-6549706 | None:intergenic | 50.0% | |
| CCATCCACTCAAATTGGGGT+GGG | + | chr6.3:6549685-6549704 | MS.gene20446:CDS | 50.0% | |
| CCATTGCGAGATAAGAGCTC+AGG | - | chr6.3:6549964-6549983 | None:intergenic | 50.0% | |
| CCCAAGTACTTTACACGGTC+TGG | - | chr6.3:6549775-6549794 | None:intergenic | 50.0% | |
| CCTGAGCTCTTATCTCGCAA+TGG | + | chr6.3:6549961-6549980 | MS.gene20446:CDS | 50.0% | |
| CGAGGTCATCCACAGTAGAT+GGG | + | chr6.3:6549909-6549928 | MS.gene20446:CDS | 50.0% | |
| CTTGGCAAGCCCATATAGCA+AGG | - | chr6.3:6550092-6550111 | None:intergenic | 50.0% | |
| GGTGAATTCCCTGGTGACTA+CGG | + | chr6.3:6549829-6549848 | MS.gene20446:CDS | 50.0% | |
| GTAGTCACCAGGGAATTCAC+CGG | - | chr6.3:6549830-6549849 | None:intergenic | 50.0% | |
| TACGCCACAAACTTTGCTCC+TGG | + | chr6.3:6550387-6550406 | MS.gene20446:CDS | 50.0% | |
| TCAAATTCGGCGAGGCTGTA+TGG | + | chr6.3:6549986-6550005 | MS.gene20446:CDS | 50.0% | |
| TCAAGCCATTGTGACCGGAA+AGG | + | chr6.3:6550305-6550324 | MS.gene20446:CDS | 50.0% | |
| TCGAGGTCATCCACAGTAGA+TGG | + | chr6.3:6549908-6549927 | MS.gene20446:CDS | 50.0% | |
| TCTTCCCACCCCAATTTGAG+TGG | - | chr6.3:6549692-6549711 | None:intergenic | 50.0% | |
| TGCAAAAGCCTCGGGATCTT+CGG | - | chr6.3:6550220-6550239 | None:intergenic | 50.0% | |
| ! | AGATGGAACGGACTTCTTGG+TGG | - | chr6.3:6549734-6549753 | None:intergenic | 50.0% |
| ! | ATCTTAATGGGCGCTGTGGA+GGG | + | chr6.3:6550114-6550133 | MS.gene20446:CDS | 50.0% |
| ! | CAATGGTGTCAAATTCGGCG+AGG | + | chr6.3:6549978-6549997 | MS.gene20446:CDS | 50.0% |
| ! | CGAGGCTTTTGCAGAGTTGA+AGG | + | chr6.3:6550227-6550246 | MS.gene20446:CDS | 50.0% |
| ! | TATCTTAATGGGCGCTGTGG+AGG | + | chr6.3:6550113-6550132 | MS.gene20446:CDS | 50.0% |
| ! | TCCAGATGGAACGGACTTCT+TGG | - | chr6.3:6549737-6549756 | None:intergenic | 50.0% |
| !! | CCACAGTAGATGGGCTATGT+TGG | + | chr6.3:6549918-6549937 | MS.gene20446:CDS | 50.0% |
| AAGCTACCACCTGGGTAGAG+TGG | - | chr6.3:6550180-6550199 | None:intergenic | 55.0% | |
| AAGGGGTCAAAGCTACCACC+TGG | - | chr6.3:6550189-6550208 | None:intergenic | 55.0% | |
| AGGGAATTCACCGGTGAGGT+AGG | - | chr6.3:6549821-6549840 | None:intergenic | 55.0% | |
| AGGGGTCAAAGCTACCACCT+GGG | - | chr6.3:6550188-6550207 | None:intergenic | 55.0% | |
| CCATCTGGAAGCCCATGGTA+CGG | + | chr6.3:6549748-6549767 | MS.gene20446:CDS | 55.0% | |
| CCATGGGCTTCCAGATGGAA+CGG | - | chr6.3:6549746-6549765 | None:intergenic | 55.0% | |
| CCCACCCCAATTTGAGTGGA+TGG | - | chr6.3:6549688-6549707 | None:intergenic | 55.0% | |
| CCCATCCACTCAAATTGGGG+TGG | + | chr6.3:6549684-6549703 | MS.gene20446:CDS | 55.0% | |
| CGAGAGGTCCACCAGCAATA+CGG | - | chr6.3:6550143-6550162 | None:intergenic | 55.0% | |
| CTCAGGGAAGACACATCCCA+AGG | - | chr6.3:6549947-6549966 | None:intergenic | 55.0% | |
| GAGGCTGTATGGTTCAAGGC+AGG | + | chr6.3:6549997-6550016 | MS.gene20446:CDS | 55.0% | |
| GAGGGTTACCGTATTGCTGG+TGG | + | chr6.3:6550132-6550151 | MS.gene20446:CDS | 55.0% | |
| GATGGGGCTTCACCAGAGAA+TGG | - | chr6.3:6549799-6549818 | None:intergenic | 55.0% | |
| GGGTGGGAAGAGTCACAATG+AGG | + | chr6.3:6549701-6549720 | MS.gene20446:CDS | 55.0% | |
| GTAGTCGATCCACTCTACCC+AGG | + | chr6.3:6550168-6550187 | MS.gene20446:CDS | 55.0% | |
| GTGGAGGGTTACCGTATTGC+TGG | + | chr6.3:6550129-6550148 | MS.gene20446:CDS | 55.0% | |
| GTTCTCGATGGGTCCCTTTC+CGG | - | chr6.3:6550322-6550341 | None:intergenic | 55.0% | |
| TACCTCACCGGTGAATTCCC+TGG | + | chr6.3:6549820-6549839 | MS.gene20446:CDS | 55.0% | |
| TGGGCTATGTTGGGTGCCTT+GGG | + | chr6.3:6549928-6549947 | MS.gene20446:CDS | 55.0% | |
| TGTCCCAACCGTAGTCACCA+GGG | - | chr6.3:6549840-6549859 | None:intergenic | 55.0% | |
| TTCACCGGTGAGGTAGGATG+GGG | - | chr6.3:6549815-6549834 | None:intergenic | 55.0% | |
| ! | ATGGGCTATGTTGGGTGCCT+TGG | + | chr6.3:6549927-6549946 | MS.gene20446:CDS | 55.0% |
| ! | CGTATTGCTGGTGGACCTCT+CGG | + | chr6.3:6550141-6550160 | MS.gene20446:CDS | 55.0% |
| ! | GAGGGTGGGCTTGACTACTT+GGG | + | chr6.3:6550036-6550055 | MS.gene20446:CDS | 55.0% |
| ! | TGAGGGTGGGCTTGACTACT+TGG | + | chr6.3:6550035-6550054 | MS.gene20446:CDS | 55.0% |
| !! | AGGTGGTAGCTTTGACCCCT+TGG | + | chr6.3:6550188-6550207 | MS.gene20446:CDS | 55.0% |
| !! | GGTGGTAGCTTTGACCCCTT+GGG | + | chr6.3:6550189-6550208 | MS.gene20446:CDS | 55.0% |
| AAGCCTCGGGATCTTCGGCA+AGG | - | chr6.3:6550215-6550234 | None:intergenic | 60.0% | |
| ACACGGTCTGGACCGTACCA+TGG | - | chr6.3:6549763-6549782 | None:intergenic | 60.0% | |
| CACCAGGGAATTCACCGGTG+AGG | - | chr6.3:6549825-6549844 | None:intergenic | 60.0% | |
| CACGGTCTGGACCGTACCAT+GGG | - | chr6.3:6549762-6549781 | None:intergenic | 60.0% | |
| CCGTACCATGGGCTTCCAGA+TGG | - | chr6.3:6549751-6549770 | None:intergenic | 60.0% | |
| CCGTTCCATCTGGAAGCCCA+TGG | + | chr6.3:6549743-6549762 | MS.gene20446:CDS | 60.0% | |
| CGGCGAGGCTGTATGGTTCA+AGG | + | chr6.3:6549993-6550012 | MS.gene20446:CDS | 60.0% | |
| GAAGCCCCATCCTACCTCAC+CGG | + | chr6.3:6549808-6549827 | MS.gene20446:CDS | 60.0% | |
| GACTACGGTTGGGACACTGC+TGG | + | chr6.3:6549844-6549863 | MS.gene20446:CDS | 60.0% | |
| GATCTTCGGCAAGGCCCAAG+GGG | - | chr6.3:6550206-6550225 | None:intergenic | 60.0% | |
| GGATCGACTACCTCACCGAG+AGG | - | chr6.3:6550159-6550178 | None:intergenic | 60.0% | |
| GGATCTTCGGCAAGGCCCAA+GGG | - | chr6.3:6550207-6550226 | None:intergenic | 60.0% | |
| GGGTCCCTTTCCGGTCACAA+TGG | - | chr6.3:6550313-6550332 | None:intergenic | 60.0% | |
| GTCGATCCACTCTACCCAGG+TGG | + | chr6.3:6550171-6550190 | MS.gene20446:CDS | 60.0% | |
| GTGTCCCAACCGTAGTCACC+AGG | - | chr6.3:6549841-6549860 | None:intergenic | 60.0% | |
| TGGTCGGCGAGGTTCTCGAT+GGG | - | chr6.3:6550333-6550352 | None:intergenic | 60.0% | |
| GATCAGCAAGGTGGTCGGCG+AGG | - | chr6.3:6550344-6550363 | None:intergenic | 65.0% | |
| GGGATCTTCGGCAAGGCCCA+AGG | - | chr6.3:6550208-6550227 | None:intergenic | 65.0% | |
| GTGGTCGGCGAGGTTCTCGA+TGG | - | chr6.3:6550334-6550353 | None:intergenic | 65.0% | |
| ! | TGCTGGTGGACCTCTCGGTG+AGG | + | chr6.3:6550146-6550165 | MS.gene20446:CDS | 65.0% |
| GGGCCTTGCCGAAGATCCCG+AGG | + | chr6.3:6550209-6550228 | MS.gene20446:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 6549622 | 6550416 | 6549622 | ID=MS.gene20446 |
| chr6.3 | mRNA | 6549622 | 6550416 | 6549622 | ID=MS.gene20446.t1;Parent=MS.gene20446 |
| chr6.3 | exon | 6549622 | 6550416 | 6549622 | ID=MS.gene20446.t1.exon1;Parent=MS.gene20446.t1 |
| chr6.3 | CDS | 6549622 | 6550416 | 6549622 | ID=cds.MS.gene20446.t1;Parent=MS.gene20446.t1 |
| Gene Sequence |
| Protein sequence |
