AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene023132

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene023132.t1 MTR_4g094605 99.624 266 1 0 1 266 1 266 0.0 538
MS.gene023132.t1 MTR_6g012080 90.226 266 25 1 1 266 1 265 1.83e-177 489
MS.gene023132.t1 MTR_6g011870 90.977 266 23 1 1 266 1 265 7.70e-175 482
MS.gene023132.t1 MTR_6g011880 90.226 266 25 1 1 266 1 265 5.42e-174 480
MS.gene023132.t1 MTR_6g011890 90.226 266 25 1 1 266 1 265 6.25e-174 480
MS.gene023132.t1 MTR_6g012110 89.098 266 28 1 1 266 1 265 6.05e-172 475
MS.gene023132.t1 MTR_5g097280 82.500 240 38 1 27 266 30 265 3.03e-149 417
MS.gene023132.t1 MTR_6g043600 83.621 232 17 2 35 266 19 229 7.20e-137 385
MS.gene023132.t1 MTR_2g081090 73.444 241 51 3 27 265 34 263 6.53e-121 346
MS.gene023132.t1 MTR_2g081090 73.191 235 61 2 33 265 2 236 1.36e-120 344
MS.gene023132.t1 MTR_6g060175 50.847 236 101 6 29 254 44 274 6.95e-66 207
MS.gene023132.t1 MTR_1g026550 46.914 243 116 7 23 254 82 322 3.02e-60 194
MS.gene023132.t1 MTR_6g060175 49.153 236 95 7 29 254 44 264 2.06e-59 190
MS.gene023132.t1 MTR_5g098785 37.500 272 132 11 9 254 10 269 7.53e-38 134
MS.gene023132.t1 MTR_5g098780 35.231 281 130 11 6 254 7 267 2.83e-37 133
MS.gene023132.t1 MTR_6g033320 43.655 197 90 7 64 254 52 233 1.04e-36 130
MS.gene023132.t1 MTR_8g023790 37.607 234 105 10 34 250 47 256 1.53e-36 130
MS.gene023132.t1 MTR_3g101670 40.206 194 102 5 65 250 66 253 4.42e-35 127
MS.gene023132.t1 MTR_2g042720 36.726 226 107 9 53 261 60 266 3.11e-32 119
MS.gene023132.t1 MTR_3g435460 35.714 196 102 5 67 253 63 243 5.38e-30 113
MS.gene023132.t1 MTR_4g015570 43.827 162 76 6 94 254 134 281 8.79e-28 108
MS.gene023132.t1 MTR_1g026550 42.000 150 81 4 24 169 83 230 2.14e-27 106
MS.gene023132.t1 MTR_3g435460 34.392 189 100 5 74 253 9 182 2.52e-26 102
MS.gene023132.t1 MTR_3g070340 36.564 227 80 10 65 244 65 274 3.56e-21 90.5
MS.gene023132.t1 MTR_5g098770 55.405 74 32 1 182 254 13 86 3.76e-21 85.5
MS.gene023132.t1 MTR_2g008610 33.816 207 87 8 67 243 73 259 7.22e-18 81.3
MS.gene023132.t1 MTR_2g436960 50.685 73 29 2 181 253 27 92 7.81e-13 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene023132.t1 AT2G34430 88.060 268 28 3 1 266 1 266 1.13e-170 472
MS.gene023132.t1 AT1G29930 87.687 268 30 3 1 266 1 267 1.12e-169 469
MS.gene023132.t1 AT1G29920 87.313 268 31 3 1 266 1 267 6.11e-169 468
MS.gene023132.t1 AT1G29910 87.313 268 31 3 1 266 1 267 6.11e-169 468
MS.gene023132.t1 AT2G34420 87.640 267 30 3 1 266 1 265 1.06e-167 464
MS.gene023132.t1 AT2G05070 77.206 272 49 4 1 266 1 265 2.60e-149 418
MS.gene023132.t1 AT3G27690 75.368 272 55 3 2 266 32 298 1.76e-148 417
MS.gene023132.t1 AT2G05100 76.471 272 51 4 1 266 1 265 1.96e-148 416
MS.gene023132.t1 AT3G27690 76.190 273 51 4 1 266 1 266 4.87e-148 415
MS.gene023132.t1 AT2G05100 75.000 244 48 4 1 238 1 237 4.31e-126 361
MS.gene023132.t1 AT5G54270 70.881 261 60 6 20 265 5 264 1.66e-120 345
MS.gene023132.t1 AT1G76570 48.416 221 104 5 44 254 100 320 9.31e-61 195
MS.gene023132.t1 AT4G10340 50.000 222 98 6 37 254 53 265 1.42e-60 193
MS.gene023132.t1 AT3G54890 45.178 197 87 7 64 254 51 232 2.70e-38 134
MS.gene023132.t1 AT1G45474 37.662 231 127 6 29 250 20 242 4.90e-38 134
MS.gene023132.t1 AT1G45474 37.662 231 127 6 29 250 20 242 4.90e-38 134
MS.gene023132.t1 AT1G61520 38.400 250 117 10 30 254 28 265 2.46e-37 133
MS.gene023132.t1 AT1G61520 38.400 250 117 10 30 254 28 265 2.46e-37 133
MS.gene023132.t1 AT3G61470 37.768 233 103 10 35 250 38 245 6.83e-37 131
MS.gene023132.t1 AT1G61520 39.614 207 90 9 74 255 15 211 1.46e-33 121
MS.gene023132.t1 AT1G19150 36.134 238 115 9 41 261 52 269 4.08e-32 119
MS.gene023132.t1 AT3G47470 40.838 191 99 7 67 253 64 244 4.03e-31 116
MS.gene023132.t1 AT3G08940 35.793 271 112 12 29 254 26 279 2.84e-29 112
MS.gene023132.t1 AT5G01530 43.210 162 77 6 94 254 135 282 2.18e-27 107
MS.gene023132.t1 AT3G54890 39.175 194 69 7 64 254 51 198 2.27e-25 100
MS.gene023132.t1 AT3G54890 41.615 161 74 6 64 219 51 196 3.47e-24 97.1
MS.gene023132.t1 AT2G40100 42.208 154 69 7 94 244 136 272 1.75e-22 94.0
MS.gene023132.t1 AT1G15820 34.300 207 86 7 67 243 70 256 6.25e-19 84.0
MS.gene023132.t1 AT5G28450 55.556 63 26 2 190 250 99 161 1.75e-13 67.4
MS.gene023132.t1 AT3G54890 43.820 89 41 3 64 150 51 132 9.63e-12 62.4

Find 125 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGTTCTTGGCGAATGTCTC+TGG 0.172290 4.3:+19110039 None:intergenic
CATAATGACCATTCACTTTC+CGG 0.213438 4.3:+19109513 None:intergenic
TCCTGAGGAGGCTACTTTCT+TGG 0.215971 4.3:+19110185 None:intergenic
ACCTTGCAGCTCCCAATTCT+TGG 0.262027 4.3:+19110232 None:intergenic
CTCAGAGCATTCTTGCCATC+TGG 0.267634 4.3:-19109840 MS.gene023132:CDS
GTGGGCTATGTTGGGAGCCT+TGG 0.274776 4.3:-19109992 MS.gene023132:CDS
GACTTCAAGTTCACGGTTCT+TGG 0.287728 4.3:+19110026 None:intergenic
CTCTGAGCATGGACCAAACT+TGG 0.318566 4.3:+19109856 None:intergenic
GTTCTCCAAAGGTCCCTTTC+CGG 0.323199 4.3:+19109600 None:intergenic
AACCCCTTCAAGCCAAGAAT+TGG 0.330885 4.3:-19110244 MS.gene023132:CDS
TTCAACTCTGCGAAAGCCTC+TGG 0.342564 4.3:+19109694 None:intergenic
CCTAAGTACTTAACACGGTC+TGG 0.354037 4.3:+19110147 None:intergenic
GCTCCCAATTCTTGGCTTGA+AGG 0.367955 4.3:+19110240 None:intergenic
CTTGAAGGGGTTAGCTTGAC+TGG 0.368606 4.3:+19110255 None:intergenic
TGGGCTATGTTGGGAGCCTT+GGG 0.369590 4.3:-19109991 MS.gene023132:CDS
CTACTTGGGTAACCCAAGTT+TGG 0.372382 4.3:-19109869 MS.gene023132:CDS
GTCCACCCTCGCTAAAGATC+TGG 0.379439 4.3:+19109896 None:intergenic
GGAGGCAGCTTTGACCCATT+GGG 0.385139 4.3:-19109730 MS.gene023132:CDS
GCCCATGCGTTGTTGTTGAC+TGG 0.388666 4.3:+19109556 None:intergenic
TATGTTCGGATTCTTTGTTC+AGG 0.392718 4.3:-19109632 MS.gene023132:CDS
CTCTCTTCACCAACCTTGGC+TGG 0.392734 4.3:-19110282 MS.gene023132:CDS
CGAGGGTGGACTTGACTACT+TGG 0.394014 4.3:-19109884 MS.gene023132:CDS
CCATAGCAGGTGGGCTATGT+TGG 0.398243 4.3:-19110001 MS.gene023132:CDS
TCTCGCAATGGTGTTAAATT+CGG 0.399582 4.3:-19109946 MS.gene023132:CDS
TATGCCACCAACTTTGTTCC+CGG 0.408282 4.3:-19109532 MS.gene023132:CDS
GTTGAAGGTTACCGTATTGC+TGG 0.411128 4.3:-19109790 MS.gene023132:CDS
AGGAGGCAGCTTTGACCCAT+TGG 0.412272 4.3:-19109731 MS.gene023132:CDS
TTAGCCATGTTCTCTATGTT+CGG 0.413048 4.3:-19109646 MS.gene023132:CDS
CTCCCAATTCTTGGCTTGAA+GGG 0.413150 4.3:+19110241 None:intergenic
ATAATGACCATTCACTTTCC+GGG 0.417015 4.3:+19109514 None:intergenic
TTTCGCAGAGTTGAAGGTTA+AGG 0.417491 4.3:-19109686 MS.gene023132:CDS
ACACGGTCTGGGCCGTACCA+TGG 0.426815 4.3:+19110159 None:intergenic
CAGGCTATTGTGACCGGAAA+GGG 0.431695 4.3:-19109613 MS.gene023132:CDS
CGTATTGCTGGTGGACCTCT+TGG 0.432323 4.3:-19109778 MS.gene023132:CDS
GGCTCTCTCTTCACCAACCT+TGG 0.434383 4.3:-19110286 MS.gene023132:CDS
AATGGGTCAAAGCTGCCTCC+TGG 0.443349 4.3:+19109733 None:intergenic
TGTGACCGGAAAGGGACCTT+TGG 0.445095 4.3:-19109605 MS.gene023132:CDS
GGCCACTCAAGTTATCTTGA+TGG 0.448718 4.3:-19109818 MS.gene023132:CDS
TCAGAGCATTCTTGCCATCT+GGG 0.457297 4.3:-19109839 MS.gene023132:CDS
CACGGTCTGGGCCGTACCAT+GGG 0.459595 4.3:+19110160 None:intergenic
TTAAATTCGGTGAGGCTGTA+TGG 0.460132 4.3:-19109933 MS.gene023132:CDS
CATAGCAGGTGGGCTATGTT+GGG 0.463478 4.3:-19110000 MS.gene023132:CDS
AGAGGCTTTCGCAGAGTTGA+AGG 0.464620 4.3:-19109692 MS.gene023132:CDS
CCCATGCGTTGTTGTTGACT+GGG 0.468289 4.3:+19109557 None:intergenic
ACCCCTTCAAGCCAAGAATT+GGG 0.469174 4.3:-19110243 MS.gene023132:CDS
ATCTTGATGGGAGCCGTTGA+AGG 0.469661 4.3:-19109805 MS.gene023132:CDS
CCAACATAGCCCACCTGCTA+TGG 0.470589 4.3:+19110001 None:intergenic
CCATTGCGAGACAAAAGCTC+TGG 0.476957 4.3:+19109958 None:intergenic
GTGTCCCATCCGTAGTCACC+TGG 0.480375 4.3:+19110081 None:intergenic
GGTCGTCAGCTAGGCCCAAT+GGG 0.483278 4.3:+19109716 None:intergenic
CGGTGAGGCTGTATGGTTCA+AGG 0.483338 4.3:-19109926 MS.gene023132:CDS
AAGCTGCCTCCTGGGTATAG+TGG 0.484943 4.3:+19109742 None:intergenic
CTTGACTGGCTTGCCAGCCA+AGG 0.485508 4.3:+19110269 None:intergenic
AAGTACTTAGGCCCATTCTC+TGG 0.486720 4.3:-19110135 MS.gene023132:CDS
TTTGTTCAGGCTATTGTGAC+CGG 0.488454 4.3:-19109619 MS.gene023132:CDS
AAGCCTCTGGGTCGTCAGCT+AGG 0.492481 4.3:+19109707 None:intergenic
GGGTCGTCAGCTAGGCCCAA+TGG 0.492858 4.3:+19109715 None:intergenic
AGCTGCCTCCTGGGTATAGT+GGG 0.505096 4.3:+19109743 None:intergenic
CCAGACCGTGTTAAGTACTT+AGG 0.508216 4.3:-19110147 MS.gene023132:CDS
ACTGGCTTGCCAGCCAAGGT+TGG 0.509911 4.3:+19110273 None:intergenic
TGAGGAGGCTACTTTCTTGG+TGG 0.512202 4.3:+19110188 None:intergenic
ATGGGTCAAAGCTGCCTCCT+GGG 0.512483 4.3:+19109734 None:intergenic
TCCACCCTCGCTAAAGATCT+GGG 0.513274 4.3:+19109897 None:intergenic
ACCCAGTCAACAACAACGCA+TGG 0.514482 4.3:-19109558 MS.gene023132:CDS
GGGAACAAAGTTGGTGGCAT+AGG 0.515086 4.3:+19109534 None:intergenic
TCACTTTCCGGGAACAAAGT+TGG 0.517061 4.3:+19109525 None:intergenic
ACTCTCCAGTCAAGTAAGAC+GGG 0.525262 4.3:+19110106 None:intergenic
GGTTCTTGGCGAATGTCTCT+GGG 0.525535 4.3:+19110040 None:intergenic
TATGGATGACTTCAAGTTCA+CGG 0.526961 4.3:+19110019 None:intergenic
CTCGCTAAAGATCTGGGATC+CGG 0.527239 4.3:+19109903 None:intergenic
GTACCATGGGCTTCCTGAGG+AGG 0.529428 4.3:+19110173 None:intergenic
TCCTCAGGAAGCCCATGGTA+CGG 0.534699 4.3:-19110171 MS.gene023132:CDS
CTTTCCGGGAACAAAGTTGG+TGG 0.536757 4.3:+19109528 None:intergenic
TCCCAGATCTTTAGCGAGGG+TGG 0.536796 4.3:-19109898 MS.gene023132:CDS
ACCAAGAAAGTAGCCTCCTC+AGG 0.538963 4.3:-19110186 MS.gene023132:CDS
TGCGTTGTTGTTGACTGGGT+CGG 0.549416 4.3:+19109561 None:intergenic
GCCACTCAAGTTATCTTGAT+GGG 0.551888 4.3:-19109817 MS.gene023132:CDS
TCAACTCTGCGAAAGCCTCT+GGG 0.551997 4.3:+19109695 None:intergenic
GGAGAGTTCCCAGGTGACTA+CGG 0.554538 4.3:-19110090 MS.gene023132:CDS
CAAGAGGTCCACCAGCAATA+CGG 0.554867 4.3:+19109779 None:intergenic
AACAATGGCCGCATCATCCA+TGG 0.557317 4.3:-19110307 None:intergenic
TACTTGACTGGAGAGTTCCC+AGG 0.557425 4.3:-19110099 MS.gene023132:CDS
CTCTGGGAAAACACATCCCA+AGG 0.558618 4.3:+19109975 None:intergenic
AACTTGAAGTCATCCATAGC+AGG 0.560347 4.3:-19110014 MS.gene023132:CDS
TGGCAAGAATGCTCTGAGCA+TGG 0.562020 4.3:+19109845 None:intergenic
AGTTCCCAGGTGACTACGGA+TGG 0.562952 4.3:-19110086 MS.gene023132:CDS
AACTCTCCAGTCAAGTAAGA+CGG 0.563156 4.3:+19110105 None:intergenic
GACTACGGATGGGACACTGC+TGG 0.567506 4.3:-19110075 MS.gene023132:CDS
TCCCAATTCTTGGCTTGAAG+GGG 0.567590 4.3:+19110242 None:intergenic
AGCAATACGGTAACCTTCAA+CGG 0.570535 4.3:+19109792 None:intergenic
GAAGGTTACCGTATTGCTGG+TGG 0.574077 4.3:-19109787 MS.gene023132:CDS
CTAAGTACTTAACACGGTCT+GGG 0.575188 4.3:+19110148 None:intergenic
GATAACTTGAGTGGCCCAGA+TGG 0.578481 4.3:+19109825 None:intergenic
TCAGGCTATTGTGACCGGAA+AGG 0.579894 4.3:-19109614 MS.gene023132:CDS
TCTGAGCATGGACCAAACTT+GGG 0.597282 4.3:+19109857 None:intergenic
CTCTCCAGTCAAGTAAGACG+GGG 0.600570 4.3:+19110107 None:intergenic
TTGAAGTCATCCATAGCAGG+TGG 0.604782 4.3:-19110011 MS.gene023132:CDS
GGTGGTAGCAGACTTCCTCA+TGG 0.606241 4.3:+19110206 None:intergenic
GCCGTACCATGGGCTTCCTG+AGG 0.606264 4.3:+19110170 None:intergenic
GAATCCGAACATAGAGAACA+TGG 0.607900 4.3:+19109642 None:intergenic
GAGGCTGTATGGTTCAAGGC+CGG 0.609667 4.3:-19109922 MS.gene023132:CDS
TCCCATCAAGATAACTTGAG+TGG 0.611094 4.3:+19109816 None:intergenic
CCCAGTCAACAACAACGCAT+GGG 0.613068 4.3:-19109557 MS.gene023132:CDS
CATTGCGAGACAAAAGCTCT+GGG 0.627524 4.3:+19109959 None:intergenic
GGTTGGTGAAGAGAGAGCCA+TGG 0.635995 4.3:+19110290 None:intergenic
TGTCCCATCCGTAGTCACCT+GGG 0.637071 4.3:+19110082 None:intergenic
CGGATCCCAGATCTTTAGCG+AGG 0.637974 4.3:-19109902 MS.gene023132:CDS
GCCAAGAATTGGGAGCTGCA+AGG 0.640361 4.3:-19110233 MS.gene023132:CDS
AGAGAGAGCCATGGATGATG+CGG 0.641541 4.3:+19110299 None:intergenic
AAGGTTAAGGAACTCAAGAA+CGG 0.645128 4.3:-19109673 MS.gene023132:CDS
TAGCCTCCTCAGGAAGCCCA+TGG 0.650998 4.3:-19110176 MS.gene023132:CDS
GGATCCCAGATCTTTAGCGA+GGG 0.652580 4.3:-19109901 MS.gene023132:CDS
GTTCCCAGGTGACTACGGAT+GGG 0.662262 4.3:-19110085 MS.gene023132:CDS
TGATCAGCAAGGTTCTCCAA+AGG 0.663337 4.3:+19109589 None:intergenic
TGAAGTCATCCATAGCAGGT+GGG 0.676313 4.3:-19110010 MS.gene023132:CDS
GAGGGTGGACTTGACTACTT+GGG 0.679046 4.3:-19109883 MS.gene023132:CDS
GAGCTGCAAGGTTCACCATG+AGG 0.681403 4.3:-19110221 MS.gene023132:CDS
GGGTCAACAACTTCACCAAG+AGG 0.691673 4.3:+19109763 None:intergenic
GGGCCTAGCTGACGACCCAG+AGG 0.694133 4.3:-19109710 MS.gene023132:CDS
GTTGTTGACCCACTATACCC+AGG 0.698071 4.3:-19109751 MS.gene023132:CDS
CAATGGTGTTAAATTCGGTG+AGG 0.700535 4.3:-19109941 MS.gene023132:CDS
GGTCGGCAAGATGATCAGCA+AGG 0.704980 4.3:+19109578 None:intergenic
TCTCCAGTCAAGTAAGACGG+GGG 0.735891 4.3:+19110108 None:intergenic
ATGGGCCTAAGTACTTAACA+CGG 0.752177 4.3:+19110142 None:intergenic
GTTGACCCACTATACCCAGG+AGG 0.784900 4.3:-19109748 MS.gene023132:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AAGGTTAAGGAACTCAAGAA+CGG - chr4.3:19110155-19110174 MS.gene023132:CDS 35.0%
TATGTTCGGATTCTTTGTTC+AGG - chr4.3:19110196-19110215 MS.gene023132:CDS 35.0%
TTAGCCATGTTCTCTATGTT+CGG - chr4.3:19110182-19110201 MS.gene023132:CDS 35.0%
! TATGGATGACTTCAAGTTCA+CGG + chr4.3:19109812-19109831 None:intergenic 35.0%
! TCTCGCAATGGTGTTAAATT+CGG - chr4.3:19109882-19109901 MS.gene023132:CDS 35.0%
AACTCTCCAGTCAAGTAAGA+CGG + chr4.3:19109726-19109745 None:intergenic 40.0%
AACTTGAAGTCATCCATAGC+AGG - chr4.3:19109814-19109833 MS.gene023132:CDS 40.0%
AGCAATACGGTAACCTTCAA+CGG + chr4.3:19110039-19110058 None:intergenic 40.0%
ATGGGCCTAAGTACTTAACA+CGG + chr4.3:19109689-19109708 None:intergenic 40.0%
CTAAGTACTTAACACGGTCT+GGG + chr4.3:19109683-19109702 None:intergenic 40.0%
GAATCCGAACATAGAGAACA+TGG + chr4.3:19110189-19110208 None:intergenic 40.0%
GCCACTCAAGTTATCTTGAT+GGG - chr4.3:19110011-19110030 MS.gene023132:CDS 40.0%
TCCCATCAAGATAACTTGAG+TGG + chr4.3:19110015-19110034 None:intergenic 40.0%
TTTCGCAGAGTTGAAGGTTA+AGG - chr4.3:19110142-19110161 MS.gene023132:CDS 40.0%
TTTGTTCAGGCTATTGTGAC+CGG - chr4.3:19110209-19110228 MS.gene023132:CDS 40.0%
! CAATGGTGTTAAATTCGGTG+AGG - chr4.3:19109887-19109906 MS.gene023132:CDS 40.0%
! TTAAATTCGGTGAGGCTGTA+TGG - chr4.3:19109895-19109914 MS.gene023132:CDS 40.0%
AACCCCTTCAAGCCAAGAAT+TGG - chr4.3:19109584-19109603 MS.gene023132:CDS 45.0%
AAGTACTTAGGCCCATTCTC+TGG - chr4.3:19109693-19109712 MS.gene023132:CDS 45.0%
ACCCCTTCAAGCCAAGAATT+GGG - chr4.3:19109585-19109604 MS.gene023132:CDS 45.0%
ACTCTCCAGTCAAGTAAGAC+GGG + chr4.3:19109725-19109744 None:intergenic 45.0%
CATTGCGAGACAAAAGCTCT+GGG + chr4.3:19109872-19109891 None:intergenic 45.0%
CCAGACCGTGTTAAGTACTT+AGG - chr4.3:19109681-19109700 MS.gene023132:CDS 45.0%
CCTAAGTACTTAACACGGTC+TGG + chr4.3:19109684-19109703 None:intergenic 45.0%
CTACTTGGGTAACCCAAGTT+TGG - chr4.3:19109959-19109978 MS.gene023132:CDS 45.0%
GGCCACTCAAGTTATCTTGA+TGG - chr4.3:19110010-19110029 MS.gene023132:CDS 45.0%
GTTGAAGGTTACCGTATTGC+TGG - chr4.3:19110038-19110057 MS.gene023132:CDS 45.0%
TATGCCACCAACTTTGTTCC+CGG - chr4.3:19110296-19110315 MS.gene023132:CDS 45.0%
TCACTTTCCGGGAACAAAGT+TGG + chr4.3:19110306-19110325 None:intergenic 45.0%
TCTGAGCATGGACCAAACTT+GGG + chr4.3:19109974-19109993 None:intergenic 45.0%
TGAAGTCATCCATAGCAGGT+GGG - chr4.3:19109818-19109837 MS.gene023132:CDS 45.0%
TGATCAGCAAGGTTCTCCAA+AGG + chr4.3:19110242-19110261 None:intergenic 45.0%
TTGAAGTCATCCATAGCAGG+TGG - chr4.3:19109817-19109836 MS.gene023132:CDS 45.0%
! CTCCCAATTCTTGGCTTGAA+GGG + chr4.3:19109590-19109609 None:intergenic 45.0%
! GACTTCAAGTTCACGGTTCT+TGG + chr4.3:19109805-19109824 None:intergenic 45.0%
! TCAGAGCATTCTTGCCATCT+GGG - chr4.3:19109989-19110008 MS.gene023132:CDS 45.0%
! TCCCAATTCTTGGCTTGAAG+GGG + chr4.3:19109589-19109608 None:intergenic 45.0%
ACCAAGAAAGTAGCCTCCTC+AGG - chr4.3:19109642-19109661 MS.gene023132:CDS 50.0%
ACCCAGTCAACAACAACGCA+TGG - chr4.3:19110270-19110289 MS.gene023132:CDS 50.0%
ACCTTGCAGCTCCCAATTCT+TGG + chr4.3:19109599-19109618 None:intergenic 50.0%
AGAGAGAGCCATGGATGATG+CGG + chr4.3:19109532-19109551 None:intergenic 50.0%
AGAGGCTTTCGCAGAGTTGA+AGG - chr4.3:19110136-19110155 MS.gene023132:CDS 50.0%
ATCTTGATGGGAGCCGTTGA+AGG - chr4.3:19110023-19110042 MS.gene023132:CDS 50.0%
CAAGAGGTCCACCAGCAATA+CGG + chr4.3:19110052-19110071 None:intergenic 50.0%
CAGGCTATTGTGACCGGAAA+GGG - chr4.3:19110215-19110234 MS.gene023132:CDS 50.0%
CCATTGCGAGACAAAAGCTC+TGG + chr4.3:19109873-19109892 None:intergenic 50.0%
CCCAGTCAACAACAACGCAT+GGG - chr4.3:19110271-19110290 MS.gene023132:CDS 50.0%
CTCTCCAGTCAAGTAAGACG+GGG + chr4.3:19109724-19109743 None:intergenic 50.0%
CTCTGAGCATGGACCAAACT+TGG + chr4.3:19109975-19109994 None:intergenic 50.0%
CTTTCCGGGAACAAAGTTGG+TGG + chr4.3:19110303-19110322 None:intergenic 50.0%
GAAGGTTACCGTATTGCTGG+TGG - chr4.3:19110041-19110060 MS.gene023132:CDS 50.0%
GATAACTTGAGTGGCCCAGA+TGG + chr4.3:19110006-19110025 None:intergenic 50.0%
GGATCCCAGATCTTTAGCGA+GGG - chr4.3:19109927-19109946 MS.gene023132:CDS 50.0%
GGGTCAACAACTTCACCAAG+AGG + chr4.3:19110068-19110087 None:intergenic 50.0%
GGTTCTTGGCGAATGTCTCT+GGG + chr4.3:19109791-19109810 None:intergenic 50.0%
GTTCTCCAAAGGTCCCTTTC+CGG + chr4.3:19110231-19110250 None:intergenic 50.0%
GTTGTTGACCCACTATACCC+AGG - chr4.3:19110077-19110096 MS.gene023132:CDS 50.0%
TACTTGACTGGAGAGTTCCC+AGG - chr4.3:19109729-19109748 MS.gene023132:CDS 50.0%
TCAACTCTGCGAAAGCCTCT+GGG + chr4.3:19110136-19110155 None:intergenic 50.0%
TCAGGCTATTGTGACCGGAA+AGG - chr4.3:19110214-19110233 MS.gene023132:CDS 50.0%
TCCACCCTCGCTAAAGATCT+GGG + chr4.3:19109934-19109953 None:intergenic 50.0%
TCTCCAGTCAAGTAAGACGG+GGG + chr4.3:19109723-19109742 None:intergenic 50.0%
TTCAACTCTGCGAAAGCCTC+TGG + chr4.3:19110137-19110156 None:intergenic 50.0%
! CCAGAGCTTTTGTCTCGCAA+TGG - chr4.3:19109870-19109889 MS.gene023132:CDS 50.0%
! CCCATGCGTTGTTGTTGACT+GGG + chr4.3:19110274-19110293 None:intergenic 50.0%
! CTCAGAGCATTCTTGCCATC+TGG - chr4.3:19109988-19110007 MS.gene023132:CDS 50.0%
! CTCGCTAAAGATCTGGGATC+CGG + chr4.3:19109928-19109947 None:intergenic 50.0%
! CTCTGGGAAAACACATCCCA+AGG + chr4.3:19109856-19109875 None:intergenic 50.0%
! GAGGGTGGACTTGACTACTT+GGG - chr4.3:19109945-19109964 MS.gene023132:CDS 50.0%
! GCTCCCAATTCTTGGCTTGA+AGG + chr4.3:19109591-19109610 None:intergenic 50.0%
! TCCTGAGGAGGCTACTTTCT+TGG + chr4.3:19109646-19109665 None:intergenic 50.0%
! TGAGGAGGCTACTTTCTTGG+TGG + chr4.3:19109643-19109662 None:intergenic 50.0%
! TGCGTTGTTGTTGACTGGGT+CGG + chr4.3:19110270-19110289 None:intergenic 50.0%
! TGGCAAGAATGCTCTGAGCA+TGG + chr4.3:19109986-19110005 None:intergenic 50.0%
!! CATAGCAGGTGGGCTATGTT+GGG - chr4.3:19109828-19109847 MS.gene023132:CDS 50.0%
!! CTTGAAGGGGTTAGCTTGAC+TGG + chr4.3:19109576-19109595 None:intergenic 50.0%
!! GGGAACAAAGTTGGTGGCAT+AGG + chr4.3:19110297-19110316 None:intergenic 50.0%
AAGCTGCCTCCTGGGTATAG+TGG + chr4.3:19110089-19110108 None:intergenic 55.0%
AATGGGTCAAAGCTGCCTCC+TGG + chr4.3:19110098-19110117 None:intergenic 55.0%
AGCTGCCTCCTGGGTATAGT+GGG + chr4.3:19110088-19110107 None:intergenic 55.0%
AGTTCCCAGGTGACTACGGA+TGG - chr4.3:19109742-19109761 MS.gene023132:CDS 55.0%
ATGGGTCAAAGCTGCCTCCT+GGG + chr4.3:19110097-19110116 None:intergenic 55.0%
CCAACATAGCCCACCTGCTA+TGG + chr4.3:19109830-19109849 None:intergenic 55.0%
CGGATCCCAGATCTTTAGCG+AGG - chr4.3:19109926-19109945 MS.gene023132:CDS 55.0%
CGGTGAGGCTGTATGGTTCA+AGG - chr4.3:19109902-19109921 MS.gene023132:CDS 55.0%
CGGTTCTTGGCGAATGTCTC+TGG + chr4.3:19109792-19109811 None:intergenic 55.0%
CTCTCTTCACCAACCTTGGC+TGG - chr4.3:19109546-19109565 MS.gene023132:CDS 55.0%
GAGCTGCAAGGTTCACCATG+AGG - chr4.3:19109607-19109626 MS.gene023132:CDS 55.0%
GAGGCTGTATGGTTCAAGGC+CGG - chr4.3:19109906-19109925 MS.gene023132:CDS 55.0%
GCCAAGAATTGGGAGCTGCA+AGG - chr4.3:19109595-19109614 MS.gene023132:CDS 55.0%
GGAGAGTTCCCAGGTGACTA+CGG - chr4.3:19109738-19109757 MS.gene023132:CDS 55.0%
GGCTCTCTCTTCACCAACCT+TGG - chr4.3:19109542-19109561 MS.gene023132:CDS 55.0%
GGTCGGCAAGATGATCAGCA+AGG + chr4.3:19110253-19110272 None:intergenic 55.0%
GGTGGTAGCAGACTTCCTCA+TGG + chr4.3:19109625-19109644 None:intergenic 55.0%
GTCCACCCTCGCTAAAGATC+TGG + chr4.3:19109935-19109954 None:intergenic 55.0%
GTTCCCAGGTGACTACGGAT+GGG - chr4.3:19109743-19109762 MS.gene023132:CDS 55.0%
GTTGACCCACTATACCCAGG+AGG - chr4.3:19110080-19110099 MS.gene023132:CDS 55.0%
TCCCAGATCTTTAGCGAGGG+TGG - chr4.3:19109930-19109949 MS.gene023132:CDS 55.0%
TCCTCAGGAAGCCCATGGTA+CGG - chr4.3:19109657-19109676 MS.gene023132:CDS 55.0%
TGGGCTATGTTGGGAGCCTT+GGG - chr4.3:19109837-19109856 MS.gene023132:CDS 55.0%
TGTCCCATCCGTAGTCACCT+GGG + chr4.3:19109749-19109768 None:intergenic 55.0%
TGTGACCGGAAAGGGACCTT+TGG - chr4.3:19110223-19110242 MS.gene023132:CDS 55.0%
! AGGAGGCAGCTTTGACCCAT+TGG - chr4.3:19110097-19110116 MS.gene023132:CDS 55.0%
! CGAGGGTGGACTTGACTACT+TGG - chr4.3:19109944-19109963 MS.gene023132:CDS 55.0%
! CGTATTGCTGGTGGACCTCT+TGG - chr4.3:19110050-19110069 MS.gene023132:CDS 55.0%
! GCCCATGCGTTGTTGTTGAC+TGG + chr4.3:19110275-19110294 None:intergenic 55.0%
! GGAGGCAGCTTTGACCCATT+GGG - chr4.3:19110098-19110117 MS.gene023132:CDS 55.0%
!! CCATAGCAGGTGGGCTATGT+TGG - chr4.3:19109827-19109846 MS.gene023132:CDS 55.0%
!! GGTTGGTGAAGAGAGAGCCA+TGG + chr4.3:19109541-19109560 None:intergenic 55.0%
AAGCCTCTGGGTCGTCAGCT+AGG + chr4.3:19110124-19110143 None:intergenic 60.0%
ACGGGGGCTCACCAGAGAAT+GGG + chr4.3:19109707-19109726 None:intergenic 60.0%
GACTACGGATGGGACACTGC+TGG - chr4.3:19109753-19109772 MS.gene023132:CDS 60.0%
GAGCCCCCGTCTTACTTGAC+TGG - chr4.3:19109717-19109736 MS.gene023132:CDS 60.0%
GGTCGTCAGCTAGGCCCAAT+GGG + chr4.3:19110115-19110134 None:intergenic 60.0%
GTACCATGGGCTTCCTGAGG+AGG + chr4.3:19109658-19109677 None:intergenic 60.0%
GTGTCCCATCCGTAGTCACC+TGG + chr4.3:19109750-19109769 None:intergenic 60.0%
TAGCCTCCTCAGGAAGCCCA+TGG - chr4.3:19109652-19109671 MS.gene023132:CDS 60.0%
! GTGGGCTATGTTGGGAGCCT+TGG - chr4.3:19109836-19109855 MS.gene023132:CDS 60.0%
!! ACTGGCTTGCCAGCCAAGGT+TGG + chr4.3:19109558-19109577 None:intergenic 60.0%
!! CTTGACTGGCTTGCCAGCCA+AGG + chr4.3:19109562-19109581 None:intergenic 60.0%
ACACGGTCTGGGCCGTACCA+TGG + chr4.3:19109672-19109691 None:intergenic 65.0%
CACGGTCTGGGCCGTACCAT+GGG + chr4.3:19109671-19109690 None:intergenic 65.0%
GACGGGGGCTCACCAGAGAA+TGG + chr4.3:19109708-19109727 None:intergenic 65.0%
GCCGTACCATGGGCTTCCTG+AGG + chr4.3:19109661-19109680 None:intergenic 65.0%
GGGTCGTCAGCTAGGCCCAA+TGG + chr4.3:19110116-19110135 None:intergenic 65.0%
GGGCCTAGCTGACGACCCAG+AGG - chr4.3:19110118-19110137 MS.gene023132:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 19109525 19110325 19109525 ID=MS.gene023132
chr4.3 mRNA 19109525 19110325 19109525 ID=MS.gene023132.t1;Parent=MS.gene023132
chr4.3 exon 19109525 19110325 19109525 ID=MS.gene023132.t1.exon1;Parent=MS.gene023132.t1
chr4.3 CDS 19109525 19110325 19109525 ID=cds.MS.gene023132.t1;Parent=MS.gene023132.t1
Gene Sequence

>MS.gene023132

ATGGCCGCATCATCCATGGCTCTCTCTTCACCAACCTTGGCTGGCAAGCCAGTCAAGCTAACCCCTTCAAGCCAAGAATTGGGAGCTGCAAGGTTCACCATGAGGAAGTCTGCTACCACCAAGAAAGTAGCCTCCTCAGGAAGCCCATGGTACGGCCCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGCCCCCGTCTTACTTGACTGGAGAGTTCCCAGGTGACTACGGATGGGACACTGCTGGACTTTCTGCTGACCCAGAGACATTCGCCAAGAACCGTGAACTTGAAGTCATCCATAGCAGGTGGGCTATGTTGGGAGCCTTGGGATGTGTTTTCCCAGAGCTTTTGTCTCGCAATGGTGTTAAATTCGGTGAGGCTGTATGGTTCAAGGCCGGATCCCAGATCTTTAGCGAGGGTGGACTTGACTACTTGGGTAACCCAAGTTTGGTCCATGCTCAGAGCATTCTTGCCATCTGGGCCACTCAAGTTATCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAAGTTGTTGACCCACTATACCCAGGAGGCAGCTTTGACCCATTGGGCCTAGCTGACGACCCAGAGGCTTTCGCAGAGTTGAAGGTTAAGGAACTCAAGAACGGTAGATTAGCCATGTTCTCTATGTTCGGATTCTTTGTTCAGGCTATTGTGACCGGAAAGGGACCTTTGGAGAACCTTGCTGATCATCTTGCCGACCCAGTCAACAACAACGCATGGGCCTATGCCACCAACTTTGTTCCCGGAAAGTGA
Protein sequence

>MS.gene023132.t1

MAASSMALSSPTLAGKPVKLTPSSQELGAARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK