AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene031016

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031016.t1 MTR_6g011880 98.113 265 4 1 1 264 1 265 0.0 524
MS.gene031016.t1 MTR_6g011870 98.113 265 4 1 1 264 1 265 0.0 523
MS.gene031016.t1 MTR_6g012080 92.075 265 20 1 1 264 1 265 0.0 499
MS.gene031016.t1 MTR_6g011890 94.717 265 13 1 1 264 1 265 0.0 498
MS.gene031016.t1 MTR_6g012110 92.453 265 19 1 1 264 1 265 3.26e-176 486
MS.gene031016.t1 MTR_4g094605 89.850 266 25 2 1 264 1 266 3.99e-175 483
MS.gene031016.t1 MTR_5g097280 76.404 267 54 4 4 264 2 265 1.71e-148 416
MS.gene031016.t1 MTR_6g043600 78.030 264 23 3 1 264 1 229 6.96e-137 385
MS.gene031016.t1 MTR_2g081090 77.523 218 47 2 48 263 19 236 1.07e-118 339
MS.gene031016.t1 MTR_2g081090 70.120 251 63 3 15 263 23 263 1.11e-118 340
MS.gene031016.t1 MTR_6g060175 53.589 209 88 4 48 252 71 274 7.11e-65 204
MS.gene031016.t1 MTR_1g026550 46.939 245 118 7 19 252 79 322 1.38e-61 197
MS.gene031016.t1 MTR_6g060175 51.675 209 82 5 48 252 71 264 2.31e-58 187
MS.gene031016.t1 MTR_8g023790 36.330 267 119 12 12 261 31 263 1.23e-37 133
MS.gene031016.t1 MTR_5g098785 40.553 217 94 9 61 252 63 269 6.69e-37 132
MS.gene031016.t1 MTR_6g033320 43.005 193 90 6 65 252 56 233 9.39e-37 130
MS.gene031016.t1 MTR_5g098780 36.397 272 124 11 20 252 6 267 2.12e-36 130
MS.gene031016.t1 MTR_3g101670 38.916 203 92 6 63 248 66 253 1.13e-34 125
MS.gene031016.t1 MTR_2g042720 37.168 226 106 9 51 259 60 266 2.31e-32 119
MS.gene031016.t1 MTR_3g435460 36.548 197 101 5 64 251 62 243 8.44e-32 118
MS.gene031016.t1 MTR_4g015570 33.106 293 122 12 11 252 12 281 2.05e-28 110
MS.gene031016.t1 MTR_1g026550 41.830 153 84 4 19 167 79 230 3.14e-28 108
MS.gene031016.t1 MTR_3g435460 35.450 189 98 5 72 251 9 182 4.48e-28 106
MS.gene031016.t1 MTR_3g070340 45.161 155 64 8 92 242 137 274 1.64e-21 91.3
MS.gene031016.t1 MTR_5g098770 55.405 74 32 1 180 252 13 86 1.86e-21 86.3
MS.gene031016.t1 MTR_2g008610 32.850 207 89 8 65 241 73 259 7.55e-17 78.2
MS.gene031016.t1 MTR_2g436960 50.685 73 29 2 179 251 27 92 7.55e-13 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031016.t1 AT1G29930 88.015 267 29 2 1 264 1 267 9.98e-171 472
MS.gene031016.t1 AT1G29920 87.640 267 30 2 1 264 1 267 6.03e-170 470
MS.gene031016.t1 AT1G29910 87.640 267 30 2 1 264 1 267 6.03e-170 470
MS.gene031016.t1 AT2G34420 86.792 265 34 1 1 264 1 265 3.03e-168 466
MS.gene031016.t1 AT2G34430 86.517 267 32 3 1 264 1 266 2.19e-166 461
MS.gene031016.t1 AT2G05070 79.851 268 43 4 4 264 2 265 2.12e-153 428
MS.gene031016.t1 AT2G05100 79.478 268 44 4 4 264 2 265 6.14e-153 427
MS.gene031016.t1 AT3G27690 78.229 271 47 4 2 264 32 298 3.30e-152 426
MS.gene031016.t1 AT3G27690 78.439 269 46 4 4 264 2 266 1.24e-151 424
MS.gene031016.t1 AT2G05100 78.333 240 41 4 4 236 2 237 1.40e-130 372
MS.gene031016.t1 AT5G54270 69.318 264 68 6 11 263 3 264 3.14e-120 344
MS.gene031016.t1 AT1G76570 47.162 229 111 5 34 252 92 320 3.34e-61 196
MS.gene031016.t1 AT4G10340 52.153 209 91 4 48 252 62 265 4.41e-61 194
MS.gene031016.t1 AT3G54890 44.041 193 88 6 65 252 55 232 4.94e-38 134
MS.gene031016.t1 AT1G61520 41.014 217 93 9 61 252 59 265 1.94e-37 133
MS.gene031016.t1 AT1G61520 41.014 217 93 9 61 252 59 265 1.94e-37 133
MS.gene031016.t1 AT1G45474 38.326 227 123 6 31 248 24 242 7.88e-37 131
MS.gene031016.t1 AT1G45474 38.326 227 123 6 31 248 24 242 7.88e-37 131
MS.gene031016.t1 AT3G61470 39.035 228 97 10 51 261 50 252 2.93e-36 129
MS.gene031016.t1 AT1G61520 39.614 207 90 9 72 253 15 211 4.37e-34 123
MS.gene031016.t1 AT3G47470 37.563 197 99 5 64 251 63 244 3.22e-32 119
MS.gene031016.t1 AT1G19150 36.283 226 108 8 51 259 63 269 3.65e-31 117
MS.gene031016.t1 AT3G08940 35.769 260 105 12 38 252 37 279 1.53e-28 110
MS.gene031016.t1 AT5G01530 37.339 233 88 10 64 252 64 282 9.03e-28 108
MS.gene031016.t1 AT3G54890 40.764 157 74 5 65 217 55 196 4.63e-24 96.7
MS.gene031016.t1 AT3G54890 37.368 190 71 6 65 252 55 198 5.25e-24 96.3
MS.gene031016.t1 AT2G40100 42.208 154 69 7 92 242 136 272 2.86e-23 95.9
MS.gene031016.t1 AT1G15820 33.333 207 88 7 65 241 70 256 8.88e-18 80.9
MS.gene031016.t1 AT5G28450 52.632 76 28 3 188 261 99 168 5.79e-14 68.6
MS.gene031016.t1 AT3G54890 42.353 85 41 2 65 148 55 132 3.66e-11 60.8

Find 121 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAAAGCATCCTTGCTATT+TGG 0.098078 6.2:-6102879 MS.gene031016:CDS
CTTTCCCCATCCACTCAAAT+TGG 0.177035 6.2:-6103279 MS.gene031016:CDS
GCCCAAGCATTGTTGTTAAC+TGG 0.261098 6.2:+6102595 None:intergenic
TTAGCTATGTTCTCTATGTT+TGG 0.272123 6.2:-6102685 MS.gene031016:CDS
GGCTGTCCAAGTTATCTTAA+TGG 0.285228 6.2:-6102857 MS.gene031016:CDS
CGGTTCTTGGCAAATGTCTC+TGG 0.292033 6.2:+6103078 None:intergenic
GTTCTCGATGGGTCCCTTTC+CGG 0.308348 6.2:+6102639 None:intergenic
ATGGGCTATGTTGGGTGCCT+TGG 0.311551 6.2:-6103031 MS.gene031016:CDS
TCCAGATGGAACGGACTTCT+TGG 0.336432 6.2:+6103224 None:intergenic
ACAAAGCATCCTTGCTATTT+GGG 0.338109 6.2:-6102878 MS.gene031016:CDS
TGAGGGTGGGCTTGACTACT+TGG 0.346197 6.2:-6102923 MS.gene031016:CDS
TCGAGGTCATCCACAGTAGA+TGG 0.351194 6.2:-6103050 MS.gene031016:CDS
GACCTCGAGTTCACGGTTCT+TGG 0.351202 6.2:+6103065 None:intergenic
TCTCGCAACGGTGTCAAATT+CGG 0.354209 6.2:-6102985 MS.gene031016:CDS
AGGTGGCAGCTTTGACCCCT+TGG 0.354688 6.2:-6102770 MS.gene031016:CDS
TTTCCCCATCCACTCAAATT+GGG 0.360849 6.2:-6103278 MS.gene031016:CDS
AAGTACTTGGGCCCATTCTC+TGG 0.375552 6.2:-6103174 MS.gene031016:CDS
CTTTGTGCATGGACTAGACT+TGG 0.388090 6.2:+6102895 None:intergenic
GCTGTCCAAGTTATCTTAAT+GGG 0.390449 6.2:-6102856 MS.gene031016:CDS
TGGGCTATGTTGGGTGCCTT+GGG 0.394640 6.2:-6103030 MS.gene031016:CDS
CTCTCTCCATCATCATTTGT+CGG 0.403292 6.2:-6103315 MS.gene031016:CDS
GGTGGCAGCTTTGACCCCTT+GGG 0.407134 6.2:-6102769 MS.gene031016:CDS
CCCAAGTACTTCACACGGTC+TGG 0.410224 6.2:+6103186 None:intergenic
GTTGAGGGTTACCGTATTGC+TGG 0.414551 6.2:-6102829 MS.gene031016:CDS
CATCGCCCATTAAGATAACT+TGG 0.417789 6.2:+6102851 None:intergenic
ACCAAGAAGTCCGTTCCATC+TGG 0.421900 6.2:-6103225 MS.gene031016:CDS
GGGATCTTCGGCAAGGCCCA+AGG 0.428917 6.2:+6102753 None:intergenic
CCCAAGCATTGTTGTTAACT+GGG 0.430417 6.2:+6102596 None:intergenic
CGTATTGCTGGTGGGCCTCT+CGG 0.434650 6.2:-6102817 MS.gene031016:CDS
ACCCAGTTAACAACAATGCT+TGG 0.435032 6.2:-6102597 MS.gene031016:CDS
TACGCCACAAACTTTGCTCC+TGG 0.439316 6.2:-6102571 MS.gene031016:CDS
CAAGCCATTGTGACCGGAAA+GGG 0.439671 6.2:-6102652 MS.gene031016:CDS
CCCACCCCAATTTGAGTGGA+TGG 0.439774 6.2:+6103273 None:intergenic
TCCAGACCGTGTGAAGTACT+TGG 0.447731 6.2:-6103187 MS.gene031016:CDS
CACAGTAGATGGGCTATGTT+GGG 0.449424 6.2:-6103039 MS.gene031016:CDS
TGCAAAAGCCTCGGGATCTT+CGG 0.455489 6.2:+6102741 None:intergenic
CCCAGTTAACAACAATGCTT+GGG 0.458291 6.2:-6102596 MS.gene031016:CDS
CTCTGGATCAGCAGAAAGTC+CGG 0.461870 6.2:+6103095 None:intergenic
AATTCACCGGTGAGGTAGGA+TGG 0.463415 6.2:+6103144 None:intergenic
TTCGTTCAAGCCATTGTGAC+CGG 0.464946 6.2:-6102658 MS.gene031016:CDS
TCAAATTCGGTGAGGCTGTA+TGG 0.468690 6.2:-6102972 MS.gene031016:CDS
CCACAGTAGATGGGCTATGT+TGG 0.471821 6.2:-6103040 MS.gene031016:CDS
AAGGGGTCAAAGCTGCCACC+TGG 0.478492 6.2:+6102772 None:intergenic
GGATCTTCGGCAAGGCCCAA+GGG 0.479901 6.2:+6102754 None:intergenic
CGGTGAGGCTGTATGGTTCA+AGG 0.480131 6.2:-6102965 MS.gene031016:CDS
TCTCTCCATCATCATTTGTC+GGG 0.482880 6.2:-6103314 MS.gene031016:CDS
TTCAACTCTGCAAAAGCCTC+GGG 0.483017 6.2:+6102733 None:intergenic
CCACCCCAATTTGAGTGGAT+GGG 0.485135 6.2:+6103274 None:intergenic
GTGTCCCAACCGTAGTCACC+AGG 0.493454 6.2:+6103120 None:intergenic
GATGGGGCTTCACCAGAGAA+TGG 0.493907 6.2:+6103162 None:intergenic
TGTGGATGACCTCGAGTTCA+CGG 0.496468 6.2:+6103058 None:intergenic
TATCTTAATGGGCGATGTTG+AGG 0.496524 6.2:-6102845 MS.gene031016:CDS
CCGTTGCGAGATAAGAGCTC+AGG 0.496783 6.2:+6102997 None:intergenic
ATCTTAATGGGCGATGTTGA+GGG 0.497510 6.2:-6102844 MS.gene031016:CDS
CTTCAACTCTGCAAAAGCCT+CGG 0.505325 6.2:+6102732 None:intergenic
AATTCCCTGGTGACTACGGT+TGG 0.508396 6.2:-6103125 MS.gene031016:CDS
CACCCCAATTTGAGTGGATG+GGG 0.509830 6.2:+6103275 None:intergenic
ACACGGTCTGGACCGTACCA+TGG 0.513249 6.2:+6103198 None:intergenic
ATTCACCGGTGAGGTAGGAT+GGG 0.517462 6.2:+6103145 None:intergenic
AGCTGCCACCTGGGTAGAGT+GGG 0.522785 6.2:+6102782 None:intergenic
CGAGAGGCCCACCAGCAATA+CGG 0.524538 6.2:+6102818 None:intergenic
GGTGAATTCCCTGGTGACTA+CGG 0.525854 6.2:-6103129 MS.gene031016:CDS
ATGGGGCTTCACCAGAGAAT+GGG 0.527156 6.2:+6103163 None:intergenic
CACGGTCTGGACCGTACCAT+GGG 0.531172 6.2:+6103199 None:intergenic
GTGGTCGGCGAGGTTCTCGA+TGG 0.539736 6.2:+6102627 None:intergenic
CCCATCCACTCAAATTGGGG+TGG 0.539833 6.2:-6103274 MS.gene031016:CDS
ATTCCCTGGTGACTACGGTT+GGG 0.544013 6.2:-6103124 MS.gene031016:CDS
GGGCCTTGCCGAAGATCCCG+AGG 0.544664 6.2:-6102749 MS.gene031016:CDS
TACCTCACCGGTGAATTCCC+TGG 0.545647 6.2:-6103138 MS.gene031016:CDS
TCCATCATCATTTGTCGGGA+AGG 0.552834 6.2:-6103310 MS.gene031016:CDS
GCCTTCCCGACAAATGATGA+TGG 0.552917 6.2:+6103309 None:intergenic
AAGCTGCCACCTGGGTAGAG+TGG 0.558289 6.2:+6102781 None:intergenic
TTCCCCATCCACTCAAATTG+GGG 0.559064 6.2:-6103277 MS.gene031016:CDS
CGAGGTCATCCACAGTAGAT+GGG 0.559618 6.2:-6103049 MS.gene031016:CDS
AGGGTTACCGTATTGCTGGT+GGG 0.564236 6.2:-6102825 MS.gene031016:CDS
GAGGGTTACCGTATTGCTGG+TGG 0.570085 6.2:-6102826 MS.gene031016:CDS
AGATGGAACGGACTTCTTGG+TGG 0.570403 6.2:+6103227 None:intergenic
GACTACGGTTGGGACACTGC+CGG 0.570853 6.2:-6103114 MS.gene031016:CDS
CCGTACCATGGGCTTCCAGA+TGG 0.572064 6.2:+6103210 None:intergenic
CCTGAGCTCTTATCTCGCAA+CGG 0.573059 6.2:-6102997 MS.gene031016:CDS
CCAGACCGTGTGAAGTACTT+GGG 0.579440 6.2:-6103186 MS.gene031016:CDS
TGGTGGGCCTCTCGGTGAGG+TGG 0.580380 6.2:-6102809 MS.gene031016:CDS
AGGGAATTCACCGGTGAGGT+AGG 0.580879 6.2:+6103140 None:intergenic
TCTTCCCACCCCAATTTGAG+TGG 0.583180 6.2:+6103269 None:intergenic
TGTTGTTAACTGGGTCAGCA+AGG 0.584126 6.2:+6102605 None:intergenic
TAGCAAGGATGCTTTGTGCA+TGG 0.585942 6.2:+6102884 None:intergenic
TCAAGCCATTGTGACCGGAA+AGG 0.590431 6.2:-6102653 MS.gene031016:CDS
TTCACCGGTGAGGTAGGATG+GGG 0.593559 6.2:+6103146 None:intergenic
TGGTCGGCGAGGTTCTCGAT+GGG 0.594498 6.2:+6102628 None:intergenic
CCATCTGGAAGCCCATGGTA+CGG 0.594832 6.2:-6103210 MS.gene031016:CDS
CCATCCACTCAAATTGGGGT+GGG 0.595690 6.2:-6103273 MS.gene031016:CDS
GGGTCCCTTTCCGGTCACAA+TGG 0.597127 6.2:+6102648 None:intergenic
GAGGCTGTATGGTTCAAGGC+AGG 0.599804 6.2:-6102961 MS.gene031016:CDS
CTCAGGGAAAACACATCCCA+AGG 0.600836 6.2:+6103014 None:intergenic
GACAAATGATGATGGAGAGA+GGG 0.601365 6.2:+6103317 None:intergenic
TGCTGGTGGGCCTCTCGGTG+AGG 0.603055 6.2:-6102812 MS.gene031016:CDS
AACTGGGTCAGCAAGGTGGT+CGG 0.603158 6.2:+6102612 None:intergenic
CGACAAATGATGATGGAGAG+AGG 0.607479 6.2:+6103316 None:intergenic
GAAGCCCCATCCTACCTCAC+CGG 0.608563 6.2:-6103150 MS.gene031016:CDS
CTTGGACAGCCCAAATAGCA+AGG 0.610157 6.2:+6102869 None:intergenic
AGGGGTCAAAGCTGCCACCT+GGG 0.611832 6.2:+6102773 None:intergenic
CCATGGGCTTCCAGATGGAA+CGG 0.611833 6.2:+6103215 None:intergenic
AAGCCTCGGGATCTTCGGCA+AGG 0.614309 6.2:+6102746 None:intergenic
TGCCAAGAACCGTGAACTCG+AGG 0.616139 6.2:-6103067 MS.gene031016:CDS
TTTGTGCATGGACTAGACTT+GGG 0.616758 6.2:+6102896 None:intergenic
GAGGGTGGGCTTGACTACTT+GGG 0.623436 6.2:-6102922 MS.gene031016:CDS
CGTTGCGAGATAAGAGCTCA+GGG 0.623474 6.2:+6102998 None:intergenic
CCGTTCCATCTGGAAGCCCA+TGG 0.628220 6.2:-6103215 MS.gene031016:CDS
GGTCAGCAAGGTGGTCGGCG+AGG 0.632311 6.2:+6102617 None:intergenic
GATCTTCGGCAAGGCCCAAG+GGG 0.635477 6.2:+6102755 None:intergenic
CCAACATAGCCCATCTACTG+TGG 0.651695 6.2:+6103040 None:intergenic
TGTTAACTGGGTCAGCAAGG+TGG 0.674231 6.2:+6102608 None:intergenic
GTGGTCGACCCACTCTACCC+AGG 0.674935 6.2:-6102790 MS.gene031016:CDS
GTAGTCACCAGGGAATTCAC+CGG 0.681771 6.2:+6103131 None:intergenic
CACCAGGGAATTCACCGGTG+AGG 0.682525 6.2:+6103136 None:intergenic
GGGTCGACCACCTCACCGAG+AGG 0.685666 6.2:+6102802 None:intergenic
TGTCCCAACCGTAGTCACCA+GGG 0.690709 6.2:+6103121 None:intergenic
GTCGACCCACTCTACCCAGG+TGG 0.699028 6.2:-6102787 MS.gene031016:CDS
CAACGGTGTCAAATTCGGTG+AGG 0.704270 6.2:-6102980 MS.gene031016:CDS
GGGTGGGAAGAGTCACAATG+AGG 0.706667 6.2:-6103257 MS.gene031016:CDS
ATGGGCCCAAGTACTTCACA+CGG 0.711188 6.2:+6103181 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAGGTGAAAGAACTAAAAAA+TGG - chr6.2:6103188-6103207 MS.gene031016:CDS 25.0%
! TGAAAGAACTAAAAAATGGT+AGG - chr6.2:6103192-6103211 MS.gene031016:CDS 25.0%
TTAGCTATGTTCTCTATGTT+TGG - chr6.2:6103215-6103234 MS.gene031016:CDS 30.0%
GCTGTCCAAGTTATCTTAAT+GGG - chr6.2:6103044-6103063 MS.gene031016:CDS 35.0%
!! ACAAAGCATCCTTGCTATTT+GGG - chr6.2:6103022-6103041 MS.gene031016:CDS 35.0%
!!! AGGATCCCAAATTTTTAGTG+AGG - chr6.2:6102959-6102978 MS.gene031016:CDS 35.0%
!!! GGATCCCAAATTTTTAGTGA+GGG - chr6.2:6102960-6102979 MS.gene031016:CDS 35.0%
ACCCAGTTAACAACAATGCT+TGG - chr6.2:6103303-6103322 MS.gene031016:CDS 40.0%
CATCGCCCATTAAGATAACT+TGG + chr6.2:6103052-6103071 None:intergenic 40.0%
CCCACCCTCACTAAAAATTT+GGG + chr6.2:6102967-6102986 None:intergenic 40.0%
CCCAGTTAACAACAATGCTT+GGG - chr6.2:6103304-6103323 MS.gene031016:CDS 40.0%
CTCTCTCCATCATCATTTGT+CGG - chr6.2:6102585-6102604 MS.gene031016:CDS 40.0%
GGCTGTCCAAGTTATCTTAA+TGG - chr6.2:6103043-6103062 MS.gene031016:CDS 40.0%
TCTCTCCATCATCATTTGTC+GGG - chr6.2:6102586-6102605 MS.gene031016:CDS 40.0%
TTTCCCCATCCACTCAAATT+GGG - chr6.2:6102622-6102641 MS.gene031016:CDS 40.0%
! ATCTTAATGGGCGATGTTGA+GGG - chr6.2:6103056-6103075 MS.gene031016:CDS 40.0%
! CCCAAGCATTGTTGTTAACT+GGG + chr6.2:6103307-6103326 None:intergenic 40.0%
! TATCTTAATGGGCGATGTTG+AGG - chr6.2:6103055-6103074 MS.gene031016:CDS 40.0%
! TTTTCCAGGAGCAAAGTTTG+TGG + chr6.2:6103336-6103355 None:intergenic 40.0%
!! CACAAAGCATCCTTGCTATT+TGG - chr6.2:6103021-6103040 MS.gene031016:CDS 40.0%
!! GACAAATGATGATGGAGAGA+GGG + chr6.2:6102586-6102605 None:intergenic 40.0%
!! TTTGTGCATGGACTAGACTT+GGG + chr6.2:6103007-6103026 None:intergenic 40.0%
!!! CCCAAATTTTTAGTGAGGGT+GGG - chr6.2:6102964-6102983 MS.gene031016:CDS 40.0%
!!! TCCCAAATTTTTAGTGAGGG+TGG - chr6.2:6102963-6102982 MS.gene031016:CDS 40.0%
CTTCAACTCTGCAAAAGCCT+CGG + chr6.2:6103171-6103190 None:intergenic 45.0%
CTTTCCCCATCCACTCAAAT+TGG - chr6.2:6102621-6102640 MS.gene031016:CDS 45.0%
GCCCACCCTCACTAAAAATT+TGG + chr6.2:6102968-6102987 None:intergenic 45.0%
TAGCAAGGATGCTTTGTGCA+TGG + chr6.2:6103019-6103038 None:intergenic 45.0%
TCCATCATCATTTGTCGGGA+AGG - chr6.2:6102590-6102609 MS.gene031016:CDS 45.0%
TGTTGTTAACTGGGTCAGCA+AGG + chr6.2:6103298-6103317 None:intergenic 45.0%
TTCAACTCTGCAAAAGCCTC+GGG + chr6.2:6103170-6103189 None:intergenic 45.0%
TTCCCCATCCACTCAAATTG+GGG - chr6.2:6102623-6102642 MS.gene031016:CDS 45.0%
TTCGTTCAAGCCATTGTGAC+CGG - chr6.2:6103242-6103261 MS.gene031016:CDS 45.0%
! GCCCAAGCATTGTTGTTAAC+TGG + chr6.2:6103308-6103327 None:intergenic 45.0%
! TCAAATTCGGTGAGGCTGTA+TGG - chr6.2:6102928-6102947 MS.gene031016:CDS 45.0%
! TCTCGCAACGGTGTCAAATT+CGG - chr6.2:6102915-6102934 MS.gene031016:CDS 45.0%
!! CACAGTAGATGGGCTATGTT+GGG - chr6.2:6102861-6102880 MS.gene031016:CDS 45.0%
!! CGACAAATGATGATGGAGAG+AGG + chr6.2:6102587-6102606 None:intergenic 45.0%
!! CTTTGTGCATGGACTAGACT+TGG + chr6.2:6103008-6103027 None:intergenic 45.0%
AAGTACTTGGGCCCATTCTC+TGG - chr6.2:6102726-6102745 MS.gene031016:CDS 50.0%
AATTCACCGGTGAGGTAGGA+TGG + chr6.2:6102759-6102778 None:intergenic 50.0%
AATTCCCTGGTGACTACGGT+TGG - chr6.2:6102775-6102794 MS.gene031016:CDS 50.0%
ACCAAGAAGTCCGTTCCATC+TGG - chr6.2:6102675-6102694 MS.gene031016:CDS 50.0%
AGGGTTACCGTATTGCTGGT+GGG - chr6.2:6103075-6103094 MS.gene031016:CDS 50.0%
ATGGGCCCAAGTACTTCACA+CGG + chr6.2:6102722-6102741 None:intergenic 50.0%
ATGGGGCTTCACCAGAGAAT+GGG + chr6.2:6102740-6102759 None:intergenic 50.0%
ATTCACCGGTGAGGTAGGAT+GGG + chr6.2:6102758-6102777 None:intergenic 50.0%
ATTCCCTGGTGACTACGGTT+GGG - chr6.2:6102776-6102795 MS.gene031016:CDS 50.0%
CAAGCCATTGTGACCGGAAA+GGG - chr6.2:6103248-6103267 MS.gene031016:CDS 50.0%
CACCCCAATTTGAGTGGATG+GGG + chr6.2:6102628-6102647 None:intergenic 50.0%
CCAACATAGCCCATCTACTG+TGG + chr6.2:6102863-6102882 None:intergenic 50.0%
CCACCCCAATTTGAGTGGAT+GGG + chr6.2:6102629-6102648 None:intergenic 50.0%
CCATCCACTCAAATTGGGGT+GGG - chr6.2:6102627-6102646 MS.gene031016:CDS 50.0%
CCTGAGCTCTTATCTCGCAA+CGG - chr6.2:6102903-6102922 MS.gene031016:CDS 50.0%
CGAGGTCATCCACAGTAGAT+GGG - chr6.2:6102851-6102870 MS.gene031016:CDS 50.0%
CGGTTCTTGGCAAATGTCTC+TGG + chr6.2:6102825-6102844 None:intergenic 50.0%
CGTTGCGAGATAAGAGCTCA+GGG + chr6.2:6102905-6102924 None:intergenic 50.0%
CTCAGGGAAAACACATCCCA+AGG + chr6.2:6102889-6102908 None:intergenic 50.0%
CTCTGGATCAGCAGAAAGTC+CGG + chr6.2:6102808-6102827 None:intergenic 50.0%
CTTGGACAGCCCAAATAGCA+AGG + chr6.2:6103034-6103053 None:intergenic 50.0%
GCCTTCCCGACAAATGATGA+TGG + chr6.2:6102594-6102613 None:intergenic 50.0%
GGTGAATTCCCTGGTGACTA+CGG - chr6.2:6102771-6102790 MS.gene031016:CDS 50.0%
GTAGTCACCAGGGAATTCAC+CGG + chr6.2:6102772-6102791 None:intergenic 50.0%
GTTGAGGGTTACCGTATTGC+TGG - chr6.2:6103071-6103090 MS.gene031016:CDS 50.0%
TACGCCACAAACTTTGCTCC+TGG - chr6.2:6103329-6103348 MS.gene031016:CDS 50.0%
TCAAGCCATTGTGACCGGAA+AGG - chr6.2:6103247-6103266 MS.gene031016:CDS 50.0%
TCGAGGTCATCCACAGTAGA+TGG - chr6.2:6102850-6102869 MS.gene031016:CDS 50.0%
TCTTCCCACCCCAATTTGAG+TGG + chr6.2:6102634-6102653 None:intergenic 50.0%
TGCAAAAGCCTCGGGATCTT+CGG + chr6.2:6103162-6103181 None:intergenic 50.0%
TGTGGATGACCTCGAGTTCA+CGG + chr6.2:6102845-6102864 None:intergenic 50.0%
TGTTAACTGGGTCAGCAAGG+TGG + chr6.2:6103295-6103314 None:intergenic 50.0%
! AGATGGAACGGACTTCTTGG+TGG + chr6.2:6102676-6102695 None:intergenic 50.0%
! CAACGGTGTCAAATTCGGTG+AGG - chr6.2:6102920-6102939 MS.gene031016:CDS 50.0%
! CCAGACCGTGTGAAGTACTT+GGG - chr6.2:6102714-6102733 MS.gene031016:CDS 50.0%
! CGAGGCTTTTGCAGAGTTGA+AGG - chr6.2:6103169-6103188 MS.gene031016:CDS 50.0%
! TCCAGACCGTGTGAAGTACT+TGG - chr6.2:6102713-6102732 MS.gene031016:CDS 50.0%
! TCCAGATGGAACGGACTTCT+TGG + chr6.2:6102679-6102698 None:intergenic 50.0%
!! CCACAGTAGATGGGCTATGT+TGG - chr6.2:6102860-6102879 MS.gene031016:CDS 50.0%
AACTGGGTCAGCAAGGTGGT+CGG + chr6.2:6103291-6103310 None:intergenic 55.0%
AGGGAATTCACCGGTGAGGT+AGG + chr6.2:6102763-6102782 None:intergenic 55.0%
CCATCTGGAAGCCCATGGTA+CGG - chr6.2:6102690-6102709 MS.gene031016:CDS 55.0%
CCATGGGCTTCCAGATGGAA+CGG + chr6.2:6102688-6102707 None:intergenic 55.0%
CCCAAGTACTTCACACGGTC+TGG + chr6.2:6102717-6102736 None:intergenic 55.0%
CCCACCCCAATTTGAGTGGA+TGG + chr6.2:6102630-6102649 None:intergenic 55.0%
CCCATCCACTCAAATTGGGG+TGG - chr6.2:6102626-6102645 MS.gene031016:CDS 55.0%
CCGTTGCGAGATAAGAGCTC+AGG + chr6.2:6102906-6102925 None:intergenic 55.0%
CGGTGAGGCTGTATGGTTCA+AGG - chr6.2:6102935-6102954 MS.gene031016:CDS 55.0%
GACCTCGAGTTCACGGTTCT+TGG + chr6.2:6102838-6102857 None:intergenic 55.0%
GAGGCTGTATGGTTCAAGGC+AGG - chr6.2:6102939-6102958 MS.gene031016:CDS 55.0%
GAGGGTTACCGTATTGCTGG+TGG - chr6.2:6103074-6103093 MS.gene031016:CDS 55.0%
GATGGGGCTTCACCAGAGAA+TGG + chr6.2:6102741-6102760 None:intergenic 55.0%
GGGTGGGAAGAGTCACAATG+AGG - chr6.2:6102643-6102662 MS.gene031016:CDS 55.0%
GTTCTCGATGGGTCCCTTTC+CGG + chr6.2:6103264-6103283 None:intergenic 55.0%
TACCTCACCGGTGAATTCCC+TGG - chr6.2:6102762-6102781 MS.gene031016:CDS 55.0%
TGCCAAGAACCGTGAACTCG+AGG - chr6.2:6102833-6102852 MS.gene031016:CDS 55.0%
TGGGCTATGTTGGGTGCCTT+GGG - chr6.2:6102870-6102889 MS.gene031016:CDS 55.0%
TGTCCCAACCGTAGTCACCA+GGG + chr6.2:6102782-6102801 None:intergenic 55.0%
TTCACCGGTGAGGTAGGATG+GGG + chr6.2:6102757-6102776 None:intergenic 55.0%
! ATGGGCTATGTTGGGTGCCT+TGG - chr6.2:6102869-6102888 MS.gene031016:CDS 55.0%
! GAGGGTGGGCTTGACTACTT+GGG - chr6.2:6102978-6102997 MS.gene031016:CDS 55.0%
! TGAGGGTGGGCTTGACTACT+TGG - chr6.2:6102977-6102996 MS.gene031016:CDS 55.0%
AAGCCTCGGGATCTTCGGCA+AGG + chr6.2:6103157-6103176 None:intergenic 60.0%
AAGCTGCCACCTGGGTAGAG+TGG + chr6.2:6103122-6103141 None:intergenic 60.0%
AAGGGGTCAAAGCTGCCACC+TGG + chr6.2:6103131-6103150 None:intergenic 60.0%
ACACGGTCTGGACCGTACCA+TGG + chr6.2:6102705-6102724 None:intergenic 60.0%
AGCTGCCACCTGGGTAGAGT+GGG + chr6.2:6103121-6103140 None:intergenic 60.0%
AGGGGTCAAAGCTGCCACCT+GGG + chr6.2:6103130-6103149 None:intergenic 60.0%
CACCAGGGAATTCACCGGTG+AGG + chr6.2:6102767-6102786 None:intergenic 60.0%
CACGGTCTGGACCGTACCAT+GGG + chr6.2:6102704-6102723 None:intergenic 60.0%
CCGTACCATGGGCTTCCAGA+TGG + chr6.2:6102693-6102712 None:intergenic 60.0%
CCGTTCCATCTGGAAGCCCA+TGG - chr6.2:6102685-6102704 MS.gene031016:CDS 60.0%
CGAGAGGCCCACCAGCAATA+CGG + chr6.2:6103085-6103104 None:intergenic 60.0%
GAAGCCCCATCCTACCTCAC+CGG - chr6.2:6102750-6102769 MS.gene031016:CDS 60.0%
GACTACGGTTGGGACACTGC+CGG - chr6.2:6102786-6102805 MS.gene031016:CDS 60.0%
GATCTTCGGCAAGGCCCAAG+GGG + chr6.2:6103148-6103167 None:intergenic 60.0%
GGATCTTCGGCAAGGCCCAA+GGG + chr6.2:6103149-6103168 None:intergenic 60.0%
GGGTCCCTTTCCGGTCACAA+TGG + chr6.2:6103255-6103274 None:intergenic 60.0%
GTGTCCCAACCGTAGTCACC+AGG + chr6.2:6102783-6102802 None:intergenic 60.0%
TGGTCGGCGAGGTTCTCGAT+GGG + chr6.2:6103275-6103294 None:intergenic 60.0%
! AGGTGGCAGCTTTGACCCCT+TGG - chr6.2:6103130-6103149 MS.gene031016:CDS 60.0%
! CGTATTGCTGGTGGGCCTCT+CGG - chr6.2:6103083-6103102 MS.gene031016:CDS 60.0%
! GGTGGCAGCTTTGACCCCTT+GGG - chr6.2:6103131-6103150 MS.gene031016:CDS 60.0%
GGGATCTTCGGCAAGGCCCA+AGG + chr6.2:6103150-6103169 None:intergenic 65.0%
GTCGACCCACTCTACCCAGG+TGG - chr6.2:6103113-6103132 MS.gene031016:CDS 65.0%
GTGGTCGACCCACTCTACCC+AGG - chr6.2:6103110-6103129 MS.gene031016:CDS 65.0%
GTGGTCGGCGAGGTTCTCGA+TGG + chr6.2:6103276-6103295 None:intergenic 65.0%
GGGCCTTGCCGAAGATCCCG+AGG - chr6.2:6103151-6103170 MS.gene031016:CDS 70.0%
GGGTCGACCACCTCACCGAG+AGG + chr6.2:6103101-6103120 None:intergenic 70.0%
GGTCAGCAAGGTGGTCGGCG+AGG + chr6.2:6103286-6103305 None:intergenic 70.0%
! TGCTGGTGGGCCTCTCGGTG+AGG - chr6.2:6103088-6103107 MS.gene031016:CDS 70.0%
! TGGTGGGCCTCTCGGTGAGG+TGG - chr6.2:6103091-6103110 MS.gene031016:CDS 70.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 6102564 6103358 6102564 ID=MS.gene031016
chr6.2 mRNA 6102564 6103358 6102564 ID=MS.gene031016.t1;Parent=MS.gene031016
chr6.2 exon 6102564 6103358 6102564 ID=MS.gene031016.t1.exon1;Parent=MS.gene031016.t1
chr6.2 CDS 6102564 6103358 6102564 ID=cds.MS.gene031016.t1;Parent=MS.gene031016.t1
Gene Sequence

>MS.gene031016

ATGGCTGCTTCAACAATGTCCCTCTCTCCATCATCATTTGTCGGGAAGGCAATGAAGCTTTCCCCATCCACTCAAATTGGGGTGGGAAGAGTCACAATGAGGAAAACAACCACCAAGAAGTCCGTTCCATCTGGAAGCCCATGGTACGGTCCAGACCGTGTGAAGTACTTGGGCCCATTCTCTGGTGAAGCCCCATCCTACCTCACCGGTGAATTCCCTGGTGACTACGGTTGGGACACTGCCGGACTTTCTGCTGATCCAGAGACATTTGCCAAGAACCGTGAACTCGAGGTCATCCACAGTAGATGGGCTATGTTGGGTGCCTTGGGATGTGTTTTCCCTGAGCTCTTATCTCGCAACGGTGTCAAATTCGGTGAGGCTGTATGGTTCAAGGCAGGATCCCAAATTTTTAGTGAGGGTGGGCTTGACTACTTGGGTAACCCAAGTCTAGTCCATGCACAAAGCATCCTTGCTATTTGGGCTGTCCAAGTTATCTTAATGGGCGATGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTCGGTGAGGTGGTCGACCCACTCTACCCAGGTGGCAGCTTTGACCCCTTGGGCCTTGCCGAAGATCCCGAGGCTTTTGCAGAGTTGAAGGTGAAAGAACTAAAAAATGGTAGGTTAGCTATGTTCTCTATGTTTGGATTTTTCGTTCAAGCCATTGTGACCGGAAAGGGACCCATCGAGAACCTCGCCGACCACCTTGCTGACCCAGTTAACAACAATGCTTGGGCTTACGCCACAAACTTTGCTCCTGGAAAATAA
Protein sequence

>MS.gene031016.t1

MAASTMSLSPSSFVGKAMKLSPSTQIGVGRVTMRKTTTKKSVPSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGDVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFAPGK