AlfalfaGEDB | MS.gene048797

M. sativa cultivar XinJiangDaYe / MS.gene048797

KEGG: K00799
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF02798.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene048797.t1	AFK47457.1	96	250	10	0	1	250	1	250	8.20E-133	483

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene048797.t1	Q9ZRT5	71.7	223	63	0	1	223	2	224	7.9e-92	338.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene048797.t1	I3T4L5	96.0	250	10	0	1	250	1	250	5.9e-133	483.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene000510	MS.gene048797	PPI
MS.gene017060	MS.gene048797	PPI
MS.gene017062	MS.gene048797	PPI
MS.gene019181	MS.gene048797	PPI
MS.gene019183	MS.gene048797	PPI
MS.gene038277	MS.gene048797	PPI
MS.gene048797	MS.gene48032	PPI
MS.gene22188	MS.gene048797	PPI
MS.gene22195	MS.gene048797	PPI
MS.gene22196	MS.gene048797	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene048797.t1	MTR_8g098420	95.600	250	11	0	1	250	1	250	3.93e-180	494
MS.gene048797.t1	MTR_8g098420	96.685	181	6	0	1	181	1	181	3.27e-128	361
MS.gene048797.t1	MTR_8g098430	70.435	230	68	0	2	231	4	233	5.29e-122	347
MS.gene048797.t1	MTR_3g450930	30.994	171	114	3	1	171	1	167	2.12e-18	81.3
MS.gene048797.t1	MTR_3g450790	30.409	171	115	3	1	171	1	167	1.42e-17	79.0
MS.gene048797.t1	MTR_3g064700	26.667	210	147	3	1	210	1	203	6.99e-14	68.9
MS.gene048797.t1	MTR_5g090920	24.885	217	152	7	1	215	1	208	4.45e-11	61.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene048797.t1	AT5G41210	71.749	223	63	0	1	223	2	224	7.50e-122	347
MS.gene048797.t1	AT5G41240	71.239	226	65	0	1	226	1	226	1.33e-115	343
MS.gene048797.t1	AT5G41220	68.889	225	70	0	1	225	1	225	8.79e-112	333
MS.gene048797.t1	AT5G41220	67.630	173	56	0	53	225	3	175	9.99e-83	257
MS.gene048797.t1	AT5G41220	66.460	161	54	0	65	225	7	167	3.15e-75	238
MS.gene048797.t1	AT2G30870	31.579	171	113	3	1	171	1	167	5.43e-22	90.9
MS.gene048797.t1	AT2G30860	30.994	171	114	3	1	171	1	167	8.01e-19	82.4
MS.gene048797.t1	AT2G30860	29.730	148	103	1	1	148	1	147	5.48e-18	79.0
MS.gene048797.t1	AT1G02920	30.244	205	125	5	3	201	4	196	5.32e-16	74.7
MS.gene048797.t1	AT1G02930	29.756	205	125	6	3	201	4	195	6.56e-15	71.6

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Find 63 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAGAATCGCACGAGA+TGG	0.596267	4.3:-6076286	None:intergenic
AAAGTGCCTGCTATTGTTGA+TGG	0.442576	4.3:+6076579	MS.gene048797:CDS
AACATTTGGCTTAAGGGTGA+CGG	0.516834	4.3:+6077877	MS.gene048797:CDS
AACCTTCCATCAACAATAGC+AGG	0.537384	4.3:-6076585	None:intergenic
AAGAATCGCACGAGATGGCT+GGG	0.538190	4.3:-6076281	None:intergenic
AAGCAATCTAGTCAGACAGA+TGG	0.589247	4.3:+6078281	MS.gene048797:CDS
AAGCCAAATGTTCTCTATTG+TGG	0.481096	4.3:-6077866	None:intergenic
AAGGATTATGATCGTCTTCT+TGG	0.311242	4.3:+6078149	MS.gene048797:CDS
AATAGAGAACATTTGGCTTA+AGG	0.353062	4.3:+6077870	MS.gene048797:CDS
AATCACATTCTTGAAGTTAT+AGG	0.226983	4.3:-6078329	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CACTTATCTTCTGAATTTCA+AGG	+	chr4.3:6076456-6076475	MS.gene048797:CDS	30.0%
GTTAATCGCTGAAATGAAAA+TGG	-	chr4.3:6076550-6076569	None:intergenic	30.0%
TCACATTCTTGAAGTTATAG+GGG	-	chr4.3:6078330-6078349	None:intergenic	30.0%
TCCTCTATAATCTCAAATTG+AGG	+	chr4.3:6078249-6078268	MS.gene048797:CDS	30.0%
TCTAAATTCGATAGAGTCAA+CGG	+	chr4.3:6076390-6076409	MS.gene048797:intron	30.0%
TTCTGAATTGTATTCTGAAC+TGG	+	chr4.3:6077672-6077691	MS.gene048797:intron	30.0%
AAAAAATCCTCAACGAGTCA+TGG	-	chr4.3:6078024-6078043	None:intergenic	35.0%
AAAACAAGTAGACTAGGTCA+TGG	-	chr4.3:6077739-6077758	None:intergenic	35.0%
AAAATAAGAATCGCACGAGA+TGG	-	chr4.3:6076289-6076308	None:intergenic	35.0%
AAGCCAAATGTTCTCTATTG+TGG	-	chr4.3:6077869-6077888	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	6076250	6078349	6076250	ID=MS.gene048797
chr4.3	mRNA	6076250	6078349	6076250	ID=MS.gene048797.t1;Parent=MS.gene048797
chr4.3	exon	6076250	6076314	6076250	ID=MS.gene048797.t1.exon1;Parent=MS.gene048797.t1
chr4.3	CDS	6076250	6076314	6076250	ID=cds.MS.gene048797.t1;Parent=MS.gene048797.t1
chr4.3	exon	6076404	6076477	6076404	ID=MS.gene048797.t1.exon2;Parent=MS.gene048797.t1
chr4.3	CDS	6076404	6076477	6076404	ID=cds.MS.gene048797.t1;Parent=MS.gene048797.t1
chr4.3	exon	6076562	6076622	6076562	ID=MS.gene048797.t1.exon3;Parent=MS.gene048797.t1
chr4.3	CDS	6076562	6076622	6076562	ID=cds.MS.gene048797.t1;Parent=MS.gene048797.t1
chr4.3	exon	6077021	6077074	6077021	ID=MS.gene048797.t1.exon4;Parent=MS.gene048797.t1
chr4.3	CDS	6077021	6077074	6077021	ID=cds.MS.gene048797.t1;Parent=MS.gene048797.t1
chr4.3	exon	6077401	6077480	6077401	ID=MS.gene048797.t1.exon5;Parent=MS.gene048797.t1
chr4.3	CDS	6077401	6077480	6077401	ID=cds.MS.gene048797.t1;Parent=MS.gene048797.t1
chr4.3	exon	6077767	6077972	6077767	ID=MS.gene048797.t1.exon6;Parent=MS.gene048797.t1
chr4.3	CDS	6077767	6077972	6077767	ID=cds.MS.gene048797.t1;Parent=MS.gene048797.t1
chr4.3	exon	6078137	6078349	6078137	ID=MS.gene048797.t1.exon7;Parent=MS.gene048797.t1
chr4.3	CDS	6078137	6078349	6078137	ID=cds.MS.gene048797.t1;Parent=MS.gene048797.t1

Gene Sequence

>MS.gene048797

ATGAAGCTGAAAGTGTATGCGGACCGTATGTCCCAGCCATCTCGTGCGATTCTTATTTTCTGCAAGTCTGTATTTTCACTCTCCTTCTATTTTCTTAATTTCAATCTATTTGTTTTCTAATTGAATTCGATACTTTAAACTCTAAATTCGATAGAGTCAACGGAATCGATTTTGAAGAGATCCATATCGAACTTTCCAAACGTCAGCACTTATCTTCTGAATTTCAAGGTACTAATCAATTTCATATACATGTATTTTTATTTTCATGGCAAACAATTCAACTCAATTCATTTCATTCCATTTTCATTTCAGCGATTAACCCTTTCAAGAAAGTGCCTGCTATTGTTGATGGAAGGTTCAAGCTATTCGAGAGGTACTTCCATACTTCAATTCTTCCATTTTCATACAATTGAAAATGATTTTTATGTTGAGCTTTTTCCAAAAAAGTCGCAGCAGAAAAATTATATAACAAAAATATGAAGCACCGTTAAAATCATTATTATAAAAAACTATAACAAATGACCCATAATTAAGTGCTTATAATCTATTCTAAGGAACTTATATTGGGAATAACCTGTAAAAGATAATTTATGGAATACCTCACTATTATAAGATACTTATTGAAATAAGCAAAAAACAAAAAACAACTTATTGATATTTCACCTAATATAGTTTGGTGCTTCAACTCTTTTTTTTTTTTTTTTTTGACAAATTTGTTCTTCAATTATCGACTTTTTCCTATTCACGTCTTTGTTATATTCTTCTTTGCAGTCATGCAATTCTTGTCTATCTTGCTTCTGCATTTCCTGGAGTTGCACACCATTGGTAAGTATTTTCCCTCTTTCAAAATCTTTTTTATGAACTCAAGATATCTGAATGCGTAGAGGTTAAGAGGGTATTGGCTTATGCTTGTATTTGATACTTCCATTAGCTAAATATTGTATTGTATCTCAAAAACGCACCCTCGTTAGTGGAATTTTCTGATATACTAATGTTAGACATGCATCCTCGTGTAAGTTTAACCTTTGTGTATGCTAGTCATTACATACTGCAGGTTTCTTTCTGTGTTCGCTGTGTTTTACCTTATTCAGTGCAGTCATACAATTCTGTTATCCTATTTTTAAAACTTTTTGTTTCATTTATTCCATTAGGTACCCAGCTGACGTTTCCAGGAGAGCTAGAATTCACGCGGTGTTAGATTGGCATCACCTGAATTTGCGCCGTGGAGCAGGTGCGTTATTCCACGAAAACAACCCTCTTTGTTTATTTTTCTTTCAGTAATCAAATTTCAATATAGTCTTCTTTCACTATTGAGAAATTAATTTCTTGTCTTGCCTGTTTCTGAACTGGATAGCTTTATATTCTCGTGCTTATATATTATTTATCAAGTTAGCTAAAAATCATGGCTCTAGCCGGGTTATTTTCTGAATTGTATTCTGAACTGGAATTTTCCTTTTGTGTGCAAATTTTATTCTGCACCCTCTTTCCATGACCTAGTCTACTTGTTTTTGCTCTAGCCGGGTTTGTTCTAAATACTGTACTAGCTCCATTATTGGGTCTACCACTAAACAAGCAAGCAGCTGCTGAAGCTGAGAAAGTTTTGATATCATCTCTGTCCACAATAGAGAACATTTGGCTTAAGGGTGACGGGCAATACTTGCTTGGTGGCTTCCGACCTTCCATAGCGGATCTCAGCCTGGTCTGCGAAATCATGCAATTACAGGTAGACGTGGCACTGGGGTGTTCCTAAAACATAAAACTTTTTATCATGCCATGACTCGTTGAGGATTTTTTATTTTTTTATTGAGATCATGTTTAACTAGAAATGTGACATGCAGGACAGAATGCTGATAATATATTGTGATAATGACATTTCTTTGGATGCAGCTTTTAGATGAGAAGGATTATGATCGTCTTCTTGGCCCGCACAAGAAAGTTCAGCAGTGGATTGAGAGCACAAAAAATGCAACAAAACCACATTTTCATGAAGTTCATAATGTCCTCTATAATCTCAAATTGAGGCTTTCATTGAAGCAATCTAGTCAGACAGATGGGGAAATGAAATCTGGGATTAAAGCCCCTATAACTTCAAGAATGTGA

Protein sequence

>MS.gene048797.t1

MKLKVYADRMSQPSRAILIFCKVNGIDFEEIHIELSKRQHLSSEFQAINPFKKVPAIVDGRFKLFESHAILVYLASAFPGVAHHWYPADVSRRARIHAVLDWHHLNLRRGAAGFVLNTVLAPLLGLPLNKQAAAEAEKVLISSLSTIENIWLKGDGQYLLGGFRPSIADLSLVCEIMQLQLLDEKDYDRLLGPHKKVQQWIESTKNATKPHFHEVHNVLYNLKLRLSLKQSSQTDGEMKSGIKAPITSRM