Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048797.t1 | AFK47457.1 | 96 | 250 | 10 | 0 | 1 | 250 | 1 | 250 | 8.20E-133 | 483 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048797.t1 | Q9ZRT5 | 71.7 | 223 | 63 | 0 | 1 | 223 | 2 | 224 | 7.9e-92 | 338.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048797.t1 | I3T4L5 | 96.0 | 250 | 10 | 0 | 1 | 250 | 1 | 250 | 5.9e-133 | 483.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene048797 | MS.gene48032 | PPI |
| MS.gene038277 | MS.gene048797 | PPI |
| MS.gene019181 | MS.gene048797 | PPI |
| MS.gene017060 | MS.gene048797 | PPI |
| MS.gene019183 | MS.gene048797 | PPI |
| MS.gene22195 | MS.gene048797 | PPI |
| MS.gene83384 | MS.gene048797 | PPI |
| MS.gene22188 | MS.gene048797 | PPI |
| MS.gene47714 | MS.gene048797 | PPI |
| MS.gene22196 | MS.gene048797 | PPI |
| MS.gene48030 | MS.gene048797 | PPI |
| MS.gene69499 | MS.gene048797 | PPI |
| MS.gene000510 | MS.gene048797 | PPI |
| MS.gene69505 | MS.gene048797 | PPI |
| MS.gene017062 | MS.gene048797 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048797.t1 | MTR_8g098420 | 95.600 | 250 | 11 | 0 | 1 | 250 | 1 | 250 | 3.93e-180 | 494 |
| MS.gene048797.t1 | MTR_8g098420 | 96.685 | 181 | 6 | 0 | 1 | 181 | 1 | 181 | 3.27e-128 | 361 |
| MS.gene048797.t1 | MTR_8g098430 | 70.435 | 230 | 68 | 0 | 2 | 231 | 4 | 233 | 5.29e-122 | 347 |
| MS.gene048797.t1 | MTR_3g450930 | 30.994 | 171 | 114 | 3 | 1 | 171 | 1 | 167 | 2.12e-18 | 81.3 |
| MS.gene048797.t1 | MTR_3g450790 | 30.409 | 171 | 115 | 3 | 1 | 171 | 1 | 167 | 1.42e-17 | 79.0 |
| MS.gene048797.t1 | MTR_3g064700 | 26.667 | 210 | 147 | 3 | 1 | 210 | 1 | 203 | 6.99e-14 | 68.9 |
| MS.gene048797.t1 | MTR_5g090920 | 24.885 | 217 | 152 | 7 | 1 | 215 | 1 | 208 | 4.45e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048797.t1 | AT5G41210 | 71.749 | 223 | 63 | 0 | 1 | 223 | 2 | 224 | 7.50e-122 | 347 |
| MS.gene048797.t1 | AT5G41240 | 71.239 | 226 | 65 | 0 | 1 | 226 | 1 | 226 | 1.33e-115 | 343 |
| MS.gene048797.t1 | AT5G41220 | 68.889 | 225 | 70 | 0 | 1 | 225 | 1 | 225 | 8.79e-112 | 333 |
| MS.gene048797.t1 | AT5G41220 | 67.630 | 173 | 56 | 0 | 53 | 225 | 3 | 175 | 9.99e-83 | 257 |
| MS.gene048797.t1 | AT5G41220 | 66.460 | 161 | 54 | 0 | 65 | 225 | 7 | 167 | 3.15e-75 | 238 |
| MS.gene048797.t1 | AT2G30870 | 31.579 | 171 | 113 | 3 | 1 | 171 | 1 | 167 | 5.43e-22 | 90.9 |
| MS.gene048797.t1 | AT2G30860 | 30.994 | 171 | 114 | 3 | 1 | 171 | 1 | 167 | 8.01e-19 | 82.4 |
| MS.gene048797.t1 | AT2G30860 | 29.730 | 148 | 103 | 1 | 1 | 148 | 1 | 147 | 5.48e-18 | 79.0 |
| MS.gene048797.t1 | AT1G02920 | 30.244 | 205 | 125 | 5 | 3 | 201 | 4 | 196 | 5.32e-16 | 74.7 |
| MS.gene048797.t1 | AT1G02930 | 29.756 | 205 | 125 | 6 | 3 | 201 | 4 | 195 | 6.56e-15 | 71.6 |
| MS.gene048797.t1 | AT1G02930 | 29.756 | 205 | 125 | 6 | 3 | 201 | 4 | 195 | 6.56e-15 | 71.6 |
| MS.gene048797.t1 | AT1G49860 | 28.796 | 191 | 127 | 5 | 19 | 205 | 20 | 205 | 2.60e-14 | 70.9 |
| MS.gene048797.t1 | AT2G02930 | 39.080 | 87 | 53 | 0 | 3 | 89 | 4 | 90 | 5.35e-13 | 66.6 |
| MS.gene048797.t1 | AT3G03190 | 30.233 | 172 | 115 | 3 | 1 | 171 | 1 | 168 | 7.14e-13 | 66.2 |
| MS.gene048797.t1 | AT5G17220 | 34.921 | 126 | 80 | 2 | 1 | 125 | 1 | 125 | 1.45e-12 | 65.5 |
| MS.gene048797.t1 | AT4G02520 | 27.228 | 202 | 138 | 4 | 3 | 201 | 4 | 199 | 1.52e-12 | 65.1 |
Find 63 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCACATTCTTGAAGTTATA+GGG | 0.211267 | 4.3:-6078328 | None:intergenic |
| TACTGTACTAGCTCCATTAT+TGG | 0.222340 | 4.3:+6077783 | MS.gene048797:CDS |
| AATCACATTCTTGAAGTTAT+AGG | 0.226983 | 4.3:-6078329 | None:intergenic |
| TATCTTGCTTCTGCATTTCC+TGG | 0.241180 | 4.3:+6077037 | MS.gene048797:CDS |
| CTGCTCCACGGCGCAAATTC+AGG | 0.298815 | 4.3:-6077458 | None:intergenic |
| ATAGAGAACATTTGGCTTAA+GGG | 0.303430 | 4.3:+6077871 | MS.gene048797:CDS |
| AAGGATTATGATCGTCTTCT+TGG | 0.311242 | 4.3:+6078149 | MS.gene048797:CDS |
| GGTACCCAGCTGACGTTTCC+AGG | 0.325552 | 4.3:+6077400 | MS.gene048797:intron |
| AATAGAGAACATTTGGCTTA+AGG | 0.353062 | 4.3:+6077870 | MS.gene048797:CDS |
| GCAGCTGCTTGCTTGTTTAG+TGG | 0.362603 | 4.3:-6077811 | None:intergenic |
| CTGAATTTGCGCCGTGGAGC+AGG | 0.368387 | 4.3:+6077459 | MS.gene048797:CDS |
| ACAGATGGGGAAATGAAATC+TGG | 0.378165 | 4.3:+6078296 | MS.gene048797:CDS |
| CTGCGAAATCATGCAATTAC+AGG | 0.388103 | 4.3:+6077951 | MS.gene048797:CDS |
| TGTCCACAATAGAGAACATT+TGG | 0.391398 | 4.3:+6077863 | MS.gene048797:CDS |
| TTTAGTGGTAGACCCAATAA+TGG | 0.395062 | 4.3:-6077796 | None:intergenic |
| AGAAGATAAGTGCTGACGTT+TGG | 0.398305 | 4.3:-6076445 | None:intergenic |
| CACTTATCTTCTGAATTTCA+AGG | 0.400481 | 4.3:+6076456 | MS.gene048797:CDS |
| CGCGTGAATTCTAGCTCTCC+TGG | 0.415990 | 4.3:-6077418 | None:intergenic |
| ACTGTACTAGCTCCATTATT+GGG | 0.419661 | 4.3:+6077784 | MS.gene048797:CDS |
| GAATTCACGCGGTGTTAGAT+TGG | 0.424651 | 4.3:+6077430 | MS.gene048797:CDS |
| GCTCTCCTGGAAACGTCAGC+TGG | 0.434410 | 4.3:-6077405 | None:intergenic |
| TAAGAATCGCACGAGATGGC+TGG | 0.434704 | 4.3:-6076282 | None:intergenic |
| GACGTTTGGAAAGTTCGATA+TGG | 0.436029 | 4.3:-6076431 | None:intergenic |
| AAAGTGCCTGCTATTGTTGA+TGG | 0.442576 | 4.3:+6076579 | MS.gene048797:CDS |
| AAGCCAAATGTTCTCTATTG+TGG | 0.481096 | 4.3:-6077866 | None:intergenic |
| TTCCTGGAGTTGCACACCAT+TGG | 0.483640 | 4.3:+6077053 | MS.gene048797:CDS |
| GCCTCAATTTGAGATTATAG+AGG | 0.494906 | 4.3:-6078250 | None:intergenic |
| TAGCAGGCACTTTCTTGAAA+GGG | 0.498202 | 4.3:-6076569 | None:intergenic |
| ATAGCAGGCACTTTCTTGAA+AGG | 0.499112 | 4.3:-6076570 | None:intergenic |
| ACTGCTGAACTTTCTTGTGC+GGG | 0.510595 | 4.3:-6078172 | None:intergenic |
| CACTGCTGAACTTTCTTGTG+CGG | 0.511688 | 4.3:-6078173 | None:intergenic |
| AACATTTGGCTTAAGGGTGA+CGG | 0.516834 | 4.3:+6077877 | MS.gene048797:CDS |
| TTCCATAGCGGATCTCAGCC+TGG | 0.518231 | 4.3:+6077927 | MS.gene048797:CDS |
| CACGAGATGGCTGGGACATA+CGG | 0.524178 | 4.3:-6076273 | None:intergenic |
| GACGGGCAATACTTGCTTGG+TGG | 0.525091 | 4.3:+6077895 | MS.gene048797:CDS |
| TACCAATGGTGTGCAACTCC+AGG | 0.526131 | 4.3:-6077055 | None:intergenic |
| AGCAATCTAGTCAGACAGAT+GGG | 0.528693 | 4.3:+6078282 | MS.gene048797:CDS |
| ACATTTGGCTTAAGGGTGAC+GGG | 0.529892 | 4.3:+6077878 | MS.gene048797:CDS |
| CTCTCCTGGAAACGTCAGCT+GGG | 0.534776 | 4.3:-6077404 | None:intergenic |
| AACCTTCCATCAACAATAGC+AGG | 0.537384 | 4.3:-6076585 | None:intergenic |
| AAGAATCGCACGAGATGGCT+GGG | 0.538190 | 4.3:-6076281 | None:intergenic |
| TCCTCTATAATCTCAAATTG+AGG | 0.542955 | 4.3:+6078249 | MS.gene048797:CDS |
| CAGATGGGGAAATGAAATCT+GGG | 0.545472 | 4.3:+6078297 | MS.gene048797:CDS |
| TCACATTCTTGAAGTTATAG+GGG | 0.550908 | 4.3:-6078327 | None:intergenic |
| TTATGAACTTCATGAAAATG+TGG | 0.556304 | 4.3:-6078224 | None:intergenic |
| ATTGCATGATTTCGCAGACC+AGG | 0.556408 | 4.3:-6077945 | None:intergenic |
| GACCAGGCTGAGATCCGCTA+TGG | 0.574973 | 4.3:-6077929 | None:intergenic |
| TCTAAATTCGATAGAGTCAA+CGG | 0.581719 | 4.3:+6076390 | MS.gene048797:intron |
| GGTGACGGGCAATACTTGCT+TGG | 0.582776 | 4.3:+6077892 | MS.gene048797:CDS |
| AAGCAATCTAGTCAGACAGA+TGG | 0.589247 | 4.3:+6078281 | MS.gene048797:CDS |
| AAAATAAGAATCGCACGAGA+TGG | 0.596267 | 4.3:-6076286 | None:intergenic |
| CGCACAAGAAAGTTCAGCAG+TGG | 0.597331 | 4.3:+6078174 | MS.gene048797:CDS |
| AGGCTGAGATCCGCTATGGA+AGG | 0.607591 | 4.3:-6077925 | None:intergenic |
| GGAATAACGCACCTGCTCCA+CGG | 0.611210 | 4.3:-6077470 | None:intergenic |
| TGAGATCCGCTATGGAAGGT+CGG | 0.628543 | 4.3:-6077921 | None:intergenic |
| TACAGTATTTAGAACAAACC+CGG | 0.632448 | 4.3:-6077767 | None:intergenic |
| TGCCTGCTATTGTTGATGGA+AGG | 0.637587 | 4.3:+6076583 | MS.gene048797:CDS |
| CATCACCTGAATTTGCGCCG+TGG | 0.644810 | 4.3:+6077453 | MS.gene048797:CDS |
| CAGGAGAGCTAGAATTCACG+CGG | 0.651093 | 4.3:+6077419 | MS.gene048797:CDS |
| GCAATCTAGTCAGACAGATG+GGG | 0.657067 | 4.3:+6078283 | MS.gene048797:CDS |
| GATGAAGCTGAAAGTGTATG+CGG | 0.683286 | 4.3:+6076249 | None:intergenic |
| TGGCTTCCGACCTTCCATAG+CGG | 0.702512 | 4.3:+6077915 | MS.gene048797:CDS |
| GAAGGTTCAAGCTATTCGAG+AGG | 0.706131 | 4.3:+6076601 | MS.gene048797:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACAAAAAGTTTTAAAAAT+AGG | - | chr4.3:6077366-6077385 | None:intergenic | 10.0% |
| !! | ATTGAAATTAAGAAAATAGA+AGG | - | chr4.3:6076335-6076354 | None:intergenic | 15.0% |
| !!! | ATAAAAAAGATTTTGAAAGA+GGG | - | chr4.3:6077089-6077108 | None:intergenic | 15.0% |
| !!! | GATAAAAAGTTTTATGTTTT+AGG | - | chr4.3:6077998-6078017 | None:intergenic | 15.0% |
| !!! | TACATGTATTTTTATTTTCA+TGG | + | chr4.3:6076496-6076515 | MS.gene048797:intron | 15.0% |
| !! | AACCTGTAAAAGATAATTTA+TGG | + | chr4.3:6076821-6076840 | MS.gene048797:intron | 20.0% |
| !! | ACAATACAATATTTAGCTAA+TGG | - | chr4.3:6077177-6077196 | None:intergenic | 20.0% |
| !! | AGATTATAAGCACTTAATTA+TGG | - | chr4.3:6076776-6076795 | None:intergenic | 20.0% |
| !! | ATAAGTATCTTATAATAGTG+AGG | - | chr4.3:6076851-6076870 | None:intergenic | 20.0% |
| !! | ATATTTCACCTAATATAGTT+TGG | + | chr4.3:6076904-6076923 | MS.gene048797:intron | 20.0% |
| !! | GAAAGAAAAATAAACAAAGA+GGG | - | chr4.3:6077506-6077525 | None:intergenic | 20.0% |
| !! | GATTATAAGCACTTAATTAT+GGG | - | chr4.3:6076775-6076794 | None:intergenic | 20.0% |
| !! | TGAAAGAAAAATAAACAAAG+AGG | - | chr4.3:6077507-6077526 | None:intergenic | 20.0% |
| !! | TTTGTTTCATTTATTCCATT+AGG | + | chr4.3:6077379-6077398 | MS.gene048797:intron | 20.0% |
| !!! | CATAAAAAAGATTTTGAAAG+AGG | - | chr4.3:6077090-6077109 | None:intergenic | 20.0% |
| !!! | CATTTTCAATTGTATGAAAA+TGG | - | chr4.3:6076648-6076667 | None:intergenic | 20.0% |
| !!! | TATTCTAAGGAACTTATATT+GGG | + | chr4.3:6076795-6076814 | MS.gene048797:intron | 20.0% |
| !!! | TTCCATAAATTATCTTTTAC+AGG | - | chr4.3:6076826-6076845 | None:intergenic | 20.0% |
| ! | AAAATGGAAGAATTGAAGTA+TGG | - | chr4.3:6076632-6076651 | None:intergenic | 25.0% |
| ! | AATATAACAAAGACGTGAAT+AGG | - | chr4.3:6076990-6077009 | None:intergenic | 25.0% |
| ! | AGTGCTTATAATCTATTCTA+AGG | + | chr4.3:6076782-6076801 | MS.gene048797:intron | 25.0% |
| ! | ATACAATTCAGAAAATAACC+CGG | - | chr4.3:6077665-6077684 | None:intergenic | 25.0% |
| ! | ATCAAGTTAGCTAAAAATCA+TGG | + | chr4.3:6077633-6077652 | MS.gene048797:intron | 25.0% |
| ! | GAATAAAATTTGCACACAAA+AGG | - | chr4.3:6077704-6077723 | None:intergenic | 25.0% |
| ! | TTATGAACTTCATGAAAATG+TGG | - | chr4.3:6078227-6078246 | None:intergenic | 25.0% |
| !! | CTATTCTAAGGAACTTATAT+TGG | + | chr4.3:6076794-6076813 | MS.gene048797:intron | 25.0% |
| !! | TTGTGATAATGACATTTCTT+TGG | + | chr4.3:6078108-6078127 | MS.gene048797:intron | 25.0% |
| CACTTATCTTCTGAATTTCA+AGG | + | chr4.3:6076456-6076475 | MS.gene048797:CDS | 30.0% | |
| GTTAATCGCTGAAATGAAAA+TGG | - | chr4.3:6076550-6076569 | None:intergenic | 30.0% | |
| TCACATTCTTGAAGTTATAG+GGG | - | chr4.3:6078330-6078349 | None:intergenic | 30.0% | |
| TCCTCTATAATCTCAAATTG+AGG | + | chr4.3:6078249-6078268 | MS.gene048797:CDS | 30.0% | |
| TCTAAATTCGATAGAGTCAA+CGG | + | chr4.3:6076390-6076409 | MS.gene048797:intron | 30.0% | |
| TTCTGAATTGTATTCTGAAC+TGG | + | chr4.3:6077672-6077691 | MS.gene048797:intron | 30.0% | |
| ! | AATAGAGAACATTTGGCTTA+AGG | + | chr4.3:6077870-6077889 | MS.gene048797:CDS | 30.0% |
| ! | ATAGAGAACATTTGGCTTAA+GGG | + | chr4.3:6077871-6077890 | MS.gene048797:CDS | 30.0% |
| ! | TACAGTATTTAGAACAAACC+CGG | - | chr4.3:6077770-6077789 | None:intergenic | 30.0% |
| ! | TTGAAGCACCAAACTATATT+AGG | - | chr4.3:6076915-6076934 | None:intergenic | 30.0% |
| AAAAAATCCTCAACGAGTCA+TGG | - | chr4.3:6078024-6078043 | None:intergenic | 35.0% | |
| AAAACAAGTAGACTAGGTCA+TGG | - | chr4.3:6077739-6077758 | None:intergenic | 35.0% | |
| AAAATAAGAATCGCACGAGA+TGG | - | chr4.3:6076289-6076308 | None:intergenic | 35.0% | |
| AAGCCAAATGTTCTCTATTG+TGG | - | chr4.3:6077869-6077888 | None:intergenic | 35.0% | |
| AAGGATTATGATCGTCTTCT+TGG | + | chr4.3:6078149-6078168 | MS.gene048797:CDS | 35.0% | |
| ACAAAGGTTAAACTTACACG+AGG | - | chr4.3:6077259-6077278 | None:intergenic | 35.0% | |
| ACTGTACTAGCTCCATTATT+GGG | + | chr4.3:6077784-6077803 | MS.gene048797:CDS | 35.0% | |
| AGAGCAAAAACAAGTAGACT+AGG | - | chr4.3:6077745-6077764 | None:intergenic | 35.0% | |
| AGAGGGAAAATACTTACCAA+TGG | - | chr4.3:6077072-6077091 | None:intergenic | 35.0% | |
| ATCAGAAAATTCCACTAACG+AGG | - | chr4.3:6077215-6077234 | None:intergenic | 35.0% | |
| GTAATGACTAGCATACACAA+AGG | - | chr4.3:6077275-6077294 | None:intergenic | 35.0% | |
| TAACTAGAAATGTGACATGC+AGG | + | chr4.3:6078066-6078085 | MS.gene048797:intron | 35.0% | |
| TACTGTACTAGCTCCATTAT+TGG | + | chr4.3:6077783-6077802 | MS.gene048797:CDS | 35.0% | |
| TCAGAAAATTCCACTAACGA+GGG | - | chr4.3:6077214-6077233 | None:intergenic | 35.0% | |
| TGTCCACAATAGAGAACATT+TGG | + | chr4.3:6077863-6077882 | MS.gene048797:CDS | 35.0% | |
| TTGTATGACTGCACTGAATA+AGG | - | chr4.3:6077334-6077353 | None:intergenic | 35.0% | |
| TTTAGTGGTAGACCCAATAA+TGG | - | chr4.3:6077799-6077818 | None:intergenic | 35.0% | |
| ! | GCCTCAATTTGAGATTATAG+AGG | - | chr4.3:6078253-6078272 | None:intergenic | 35.0% |
| ! | TTTTTCTGCTGCGACTTTTT+TGG | - | chr4.3:6076691-6076710 | None:intergenic | 35.0% |
| AACCTTCCATCAACAATAGC+AGG | - | chr4.3:6076588-6076607 | None:intergenic | 40.0% | |
| AAGCAATCTAGTCAGACAGA+TGG | + | chr4.3:6078281-6078300 | MS.gene048797:CDS | 40.0% | |
| AAGCTATCCAGTTCAGAAAC+AGG | - | chr4.3:6077587-6077606 | None:intergenic | 40.0% | |
| ACAGATGGGGAAATGAAATC+TGG | + | chr4.3:6078296-6078315 | MS.gene048797:CDS | 40.0% | |
| AGCAATCTAGTCAGACAGAT+GGG | + | chr4.3:6078282-6078301 | MS.gene048797:CDS | 40.0% | |
| ATAGCAGGCACTTTCTTGAA+AGG | - | chr4.3:6076573-6076592 | None:intergenic | 40.0% | |
| CAAGATATCTGAATGCGTAG+AGG | + | chr4.3:6077114-6077133 | MS.gene048797:intron | 40.0% | |
| CAGATGGGGAAATGAAATCT+GGG | + | chr4.3:6078297-6078316 | MS.gene048797:CDS | 40.0% | |
| CTGCGAAATCATGCAATTAC+AGG | + | chr4.3:6077951-6077970 | MS.gene048797:CDS | 40.0% | |
| GACGTTTGGAAAGTTCGATA+TGG | - | chr4.3:6076434-6076453 | None:intergenic | 40.0% | |
| TAGACTAGGTCATGGAAAGA+GGG | - | chr4.3:6077731-6077750 | None:intergenic | 40.0% | |
| TAGCAGGCACTTTCTTGAAA+GGG | - | chr4.3:6076572-6076591 | None:intergenic | 40.0% | |
| TATCTTGCTTCTGCATTTCC+TGG | + | chr4.3:6077037-6077056 | MS.gene048797:CDS | 40.0% | |
| TGAATGCGTAGAGGTTAAGA+GGG | + | chr4.3:6077123-6077142 | MS.gene048797:intron | 40.0% | |
| TGCTAGTCATTACATACTGC+AGG | + | chr4.3:6077282-6077301 | MS.gene048797:intron | 40.0% | |
| ! | AAAGTGCCTGCTATTGTTGA+TGG | + | chr4.3:6076579-6076598 | MS.gene048797:CDS | 40.0% |
| ! | AACATTTGGCTTAAGGGTGA+CGG | + | chr4.3:6077877-6077896 | MS.gene048797:CDS | 40.0% |
| ! | GATGCAGCTTTTAGATGAGA+AGG | + | chr4.3:6078130-6078149 | MS.gene048797:intron | 40.0% |
| !! | AACAAAGAGGGTTGTTTTCG+TGG | - | chr4.3:6077494-6077513 | None:intergenic | 40.0% |
| !! | AGAAGATAAGTGCTGACGTT+TGG | - | chr4.3:6076448-6076467 | None:intergenic | 40.0% |
| !! | CTAAAAATCATGGCTCTAGC+CGG | + | chr4.3:6077643-6077662 | MS.gene048797:intron | 40.0% |
| !! | TAAAAATCATGGCTCTAGCC+GGG | + | chr4.3:6077644-6077663 | MS.gene048797:intron | 40.0% |
| !!! | CTACTTGTTTTTGCTCTAGC+CGG | + | chr4.3:6077748-6077767 | MS.gene048797:intron | 40.0% |
| !!! | TACTTGTTTTTGCTCTAGCC+GGG | + | chr4.3:6077749-6077768 | MS.gene048797:intron | 40.0% |
| ACTGCTGAACTTTCTTGTGC+GGG | - | chr4.3:6078175-6078194 | None:intergenic | 45.0% | |
| ATTGCATGATTTCGCAGACC+AGG | - | chr4.3:6077948-6077967 | None:intergenic | 45.0% | |
| CACTGCTGAACTTTCTTGTG+CGG | - | chr4.3:6078176-6078195 | None:intergenic | 45.0% | |
| CATGCAATTACAGGTAGACG+TGG | + | chr4.3:6077960-6077979 | MS.gene048797:intron | 45.0% | |
| CTGAATGCGTAGAGGTTAAG+AGG | + | chr4.3:6077122-6077141 | MS.gene048797:intron | 45.0% | |
| GAAGGTTCAAGCTATTCGAG+AGG | + | chr4.3:6076601-6076620 | MS.gene048797:CDS | 45.0% | |
| GCAATCTAGTCAGACAGATG+GGG | + | chr4.3:6078283-6078302 | MS.gene048797:CDS | 45.0% | |
| GTAGACTAGGTCATGGAAAG+AGG | - | chr4.3:6077732-6077751 | None:intergenic | 45.0% | |
| TATCATGCCATGACTCGTTG+AGG | + | chr4.3:6078014-6078033 | MS.gene048797:intron | 45.0% | |
| ! | ACATTTGGCTTAAGGGTGAC+GGG | + | chr4.3:6077878-6077897 | MS.gene048797:CDS | 45.0% |
| ! | CGTAGAGGTTAAGAGGGTAT+TGG | + | chr4.3:6077129-6077148 | MS.gene048797:intron | 45.0% |
| ! | GAATTCACGCGGTGTTAGAT+TGG | + | chr4.3:6077430-6077449 | MS.gene048797:CDS | 45.0% |
| ! | TGCCTGCTATTGTTGATGGA+AGG | + | chr4.3:6076583-6076602 | MS.gene048797:CDS | 45.0% |
| !! | TGTCTTGCCTGTTTCTGAAC+TGG | + | chr4.3:6077577-6077596 | MS.gene048797:intron | 45.0% |
| !!! | TTTTATAATAATGATTTTAA+CGG | - | chr4.3:6076737-6076756 | None:intergenic | 5.0% |
| AACGTCAGCTGGGTACCTAA+TGG | - | chr4.3:6077397-6077416 | None:intergenic | 50.0% | |
| AAGAATCGCACGAGATGGCT+GGG | - | chr4.3:6076284-6076303 | None:intergenic | 50.0% | |
| ATTACAGGTAGACGTGGCAC+TGG | + | chr4.3:6077966-6077985 | MS.gene048797:intron | 50.0% | |
| CAAAAACGCACCCTCGTTAG+TGG | + | chr4.3:6077201-6077220 | MS.gene048797:intron | 50.0% | |
| CAGGAGAGCTAGAATTCACG+CGG | + | chr4.3:6077419-6077438 | MS.gene048797:CDS | 50.0% | |
| CGCACAAGAAAGTTCAGCAG+TGG | + | chr4.3:6078174-6078193 | MS.gene048797:CDS | 50.0% | |
| GCAGCTGCTTGCTTGTTTAG+TGG | - | chr4.3:6077814-6077833 | None:intergenic | 50.0% | |
| TAAGAATCGCACGAGATGGC+TGG | - | chr4.3:6076285-6076304 | None:intergenic | 50.0% | |
| TACCAATGGTGTGCAACTCC+AGG | - | chr4.3:6077058-6077077 | None:intergenic | 50.0% | |
| TGAGATCCGCTATGGAAGGT+CGG | - | chr4.3:6077924-6077943 | None:intergenic | 50.0% | |
| TTACAGGTAGACGTGGCACT+GGG | + | chr4.3:6077967-6077986 | MS.gene048797:intron | 50.0% | |
| TTCCTGGAGTTGCACACCAT+TGG | + | chr4.3:6077053-6077072 | MS.gene048797:CDS | 50.0% | |
| AGGCTGAGATCCGCTATGGA+AGG | - | chr4.3:6077928-6077947 | None:intergenic | 55.0% | |
| CACGAGATGGCTGGGACATA+CGG | - | chr4.3:6076276-6076295 | None:intergenic | 55.0% | |
| CATCACCTGAATTTGCGCCG+TGG | + | chr4.3:6077453-6077472 | MS.gene048797:CDS | 55.0% | |
| CTCTCCTGGAAACGTCAGCT+GGG | - | chr4.3:6077407-6077426 | None:intergenic | 55.0% | |
| GACGGGCAATACTTGCTTGG+TGG | + | chr4.3:6077895-6077914 | MS.gene048797:CDS | 55.0% | |
| GGAATAACGCACCTGCTCCA+CGG | - | chr4.3:6077473-6077492 | None:intergenic | 55.0% | |
| TACAGGTAGACGTGGCACTG+GGG | + | chr4.3:6077968-6077987 | MS.gene048797:intron | 55.0% | |
| TGGCTTCCGACCTTCCATAG+CGG | + | chr4.3:6077915-6077934 | MS.gene048797:CDS | 55.0% | |
| !! | CGCGTGAATTCTAGCTCTCC+TGG | - | chr4.3:6077421-6077440 | None:intergenic | 55.0% |
| !! | GGTGACGGGCAATACTTGCT+TGG | + | chr4.3:6077892-6077911 | MS.gene048797:CDS | 55.0% |
| !! | TTCCATAGCGGATCTCAGCC+TGG | + | chr4.3:6077927-6077946 | MS.gene048797:CDS | 55.0% |
| CTGAATTTGCGCCGTGGAGC+AGG | + | chr4.3:6077459-6077478 | MS.gene048797:CDS | 60.0% | |
| CTGCTCCACGGCGCAAATTC+AGG | - | chr4.3:6077461-6077480 | None:intergenic | 60.0% | |
| GACCAGGCTGAGATCCGCTA+TGG | - | chr4.3:6077932-6077951 | None:intergenic | 60.0% | |
| GCTCTCCTGGAAACGTCAGC+TGG | - | chr4.3:6077408-6077427 | None:intergenic | 60.0% | |
| GGTACCCAGCTGACGTTTCC+AGG | + | chr4.3:6077400-6077419 | MS.gene048797:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 6076250 | 6078349 | 6076250 | ID=MS.gene048797 |
| chr4.3 | mRNA | 6076250 | 6078349 | 6076250 | ID=MS.gene048797.t1;Parent=MS.gene048797 |
| chr4.3 | exon | 6076250 | 6076314 | 6076250 | ID=MS.gene048797.t1.exon1;Parent=MS.gene048797.t1 |
| chr4.3 | CDS | 6076250 | 6076314 | 6076250 | ID=cds.MS.gene048797.t1;Parent=MS.gene048797.t1 |
| chr4.3 | exon | 6076404 | 6076477 | 6076404 | ID=MS.gene048797.t1.exon2;Parent=MS.gene048797.t1 |
| chr4.3 | CDS | 6076404 | 6076477 | 6076404 | ID=cds.MS.gene048797.t1;Parent=MS.gene048797.t1 |
| chr4.3 | exon | 6076562 | 6076622 | 6076562 | ID=MS.gene048797.t1.exon3;Parent=MS.gene048797.t1 |
| chr4.3 | CDS | 6076562 | 6076622 | 6076562 | ID=cds.MS.gene048797.t1;Parent=MS.gene048797.t1 |
| chr4.3 | exon | 6077021 | 6077074 | 6077021 | ID=MS.gene048797.t1.exon4;Parent=MS.gene048797.t1 |
| chr4.3 | CDS | 6077021 | 6077074 | 6077021 | ID=cds.MS.gene048797.t1;Parent=MS.gene048797.t1 |
| chr4.3 | exon | 6077401 | 6077480 | 6077401 | ID=MS.gene048797.t1.exon5;Parent=MS.gene048797.t1 |
| chr4.3 | CDS | 6077401 | 6077480 | 6077401 | ID=cds.MS.gene048797.t1;Parent=MS.gene048797.t1 |
| chr4.3 | exon | 6077767 | 6077972 | 6077767 | ID=MS.gene048797.t1.exon6;Parent=MS.gene048797.t1 |
| chr4.3 | CDS | 6077767 | 6077972 | 6077767 | ID=cds.MS.gene048797.t1;Parent=MS.gene048797.t1 |
| chr4.3 | exon | 6078137 | 6078349 | 6078137 | ID=MS.gene048797.t1.exon7;Parent=MS.gene048797.t1 |
| chr4.3 | CDS | 6078137 | 6078349 | 6078137 | ID=cds.MS.gene048797.t1;Parent=MS.gene048797.t1 |
| Gene Sequence |
| Protein sequence |
