AlfalfaGEDB | MS.gene049677

M. sativa cultivar XinJiangDaYe / MS.gene049677

KEGG: -
GO: -
PFAM: PF04535.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049677.t1	XP_003600618.2	95.4	217	7	2	2	215	1	217	1.10E-106	396

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049677.t1	C6TCJ2	73.1	201	47	2	2	201	1	195	1.2e-75	284.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049677.t1	G7J7X5	95.4	217	7	2	2	215	1	217	8.2e-107	396.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049677	MS.gene05032	0.831129	1.99E-55	-1.69E-46
MS.gene049677	MS.gene061583	0.966744	2.48E-126	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene034836	MS.gene049677	PPI
MS.gene034838	MS.gene049677	PPI
MS.gene034839	MS.gene049677	PPI
MS.gene034840	MS.gene049677	PPI
MS.gene049677	MS.gene056920	PPI
MS.gene056922	MS.gene049677	PPI
MS.gene056923	MS.gene049677	PPI
MS.gene056924	MS.gene049677	PPI
MS.gene056925	MS.gene049677	PPI
MS.gene065724	MS.gene049677	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049677.t1	MTR_3g064310	95.392	217	7	2	2	215	1	217	2.60e-151	419
MS.gene049677.t1	MTR_5g076480	62.150	214	75	3	3	215	1	209	4.88e-91	266
MS.gene049677.t1	MTR_0160s0040	33.537	164	107	2	36	198	14	176	2.08e-34	121
MS.gene049677.t1	MTR_2g026530	31.098	164	103	3	41	194	8	171	2.76e-19	82.0
MS.gene049677.t1	MTR_2g026530	31.098	164	103	3	41	194	28	191	3.18e-19	82.4
MS.gene049677.t1	MTR_0004s0210	29.452	146	93	4	42	182	6	146	3.47e-15	70.5
MS.gene049677.t1	MTR_0693s0030	25.517	145	91	2	60	194	36	173	3.64e-13	65.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049677.t1	AT1G17200	65.625	160	53	1	41	198	30	189	2.21e-73	221
MS.gene049677.t1	AT3G14380	51.266	158	75	2	42	197	21	178	2.72e-45	149
MS.gene049677.t1	AT1G17200	55.660	106	44	2	107	210	2	106	1.80e-34	119
MS.gene049677.t1	AT5G54980	37.059	170	99	4	41	207	29	193	3.51e-27	102
MS.gene049677.t1	AT4G16442	31.098	164	103	3	41	194	8	171	2.63e-16	73.9
MS.gene049677.t1	AT2G35760	28.342	187	118	4	33	203	13	199	1.52e-14	69.7
MS.gene049677.t1	AT1G03700	31.333	150	93	4	42	186	7	151	3.59e-14	68.2
MS.gene049677.t1	AT4G15630	28.319	113	79	1	80	190	77	189	1.06e-12	64.7
MS.gene049677.t1	AT2G27370	33.051	118	76	2	76	190	100	217	4.49e-12	63.5
MS.gene049677.t1	AT4G03540	31.148	122	74	4	61	177	26	142	1.07e-11	61.2

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Find 55 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGAGGAACCTGGTCA+AGG	0.601094	3.3:+57894183	None:intergenic
AACTCAGCTTGTGGCTCTTT+TGG	0.209207	3.3:-57893052	MS.gene049677:CDS
AAGCACGAAGCAGAGTTGGG+CGG	0.622018	3.3:+57894219	None:intergenic
AAGCTTGTAAGAGGAAATTA+TGG	0.310588	3.3:+57892958	None:intergenic
AATAACGACAGCAGAAAGTA+AGG	0.447996	3.3:+57894250	None:intergenic
AATTCCGAAGAGAATGATTA+TGG	0.368832	3.3:-57895952	MS.gene049677:CDS
ACAACTGGAGAGGAGTTGGA+AGG	0.657284	3.3:-57896066	MS.gene049677:CDS
ACAATGACCTTGGAGCTTTC+AGG	0.215827	3.3:-57895918	MS.gene049677:intron
ACACAATATAGTGATGATGA+TGG	0.543875	3.3:-57896160	None:intergenic
ACAGTATGGAACTCAGCTTG+TGG	0.703926	3.3:-57893061	MS.gene049677:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCTTGTAAGAGGAAATTA+TGG	+	chr3.3:57896072-57896091	None:intergenic	30.0%
AATTCCGAAGAGAATGATTA+TGG	-	chr3.3:57893075-57893094	MS.gene049677:CDS	30.0%
ATAAGGCTAACCAATTAGTA+AGG	-	chr3.3:57895063-57895082	MS.gene049677:intron	30.0%
CTAACACTATTGAATTTGGT+GGG	-	chr3.3:57893793-57893812	MS.gene049677:intron	30.0%
CTACTCAATGAACCTAAAAA+AGG	+	chr3.3:57895147-57895166	None:intergenic	30.0%
GGCAAATGAAATTGGAATTT+AGG	-	chr3.3:57894608-57894627	MS.gene049677:intron	30.0%
TAGGACATTTAGTAAACGAT+TGG	-	chr3.3:57894627-57894646	MS.gene049677:intron	30.0%
TATCATGCTTTAGTCATTGA+TGG	-	chr3.3:57894584-57894603	MS.gene049677:intron	30.0%
TATGTAACGTTGTAGGTATT+TGG	-	chr3.3:57894724-57894743	MS.gene049677:intron	30.0%
TCAATTGTGAAAATTGTGCA+TGG	-	chr3.3:57893404-57893423	MS.gene049677:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	57892880	57896169	57892880	ID=MS.gene049677
chr3.3	mRNA	57892880	57896169	57892880	ID=MS.gene049677.t1;Parent=MS.gene049677
chr3.3	exon	57895919	57896169	57895919	ID=MS.gene049677.t1.exon1;Parent=MS.gene049677.t1
chr3.3	CDS	57895919	57896169	57895919	ID=cds.MS.gene049677.t1;Parent=MS.gene049677.t1
chr3.3	exon	57894196	57894310	57894196	ID=MS.gene049677.t1.exon2;Parent=MS.gene049677.t1
chr3.3	CDS	57894196	57894310	57894196	ID=cds.MS.gene049677.t1;Parent=MS.gene049677.t1
chr3.3	exon	57892880	57893161	57892880	ID=MS.gene049677.t1.exon3;Parent=MS.gene049677.t1
chr3.3	CDS	57892880	57893161	57892880	ID=cds.MS.gene049677.t1;Parent=MS.gene049677.t1

Gene Sequence

>MS.gene049677

ATGATGATGGAGAAAGGTACTGGTACTGTAGTTTCAGCTACAAGGTCTCCAATGCAGGTTATGATGGCACCTGCTGCTGCTACAACTGGAGAGGAGTTGGAAGGAAACACAACTTCCTTCCTACGCACTGCTGAGACATTCCTGCGTCTTCTTCCAATTGGTCTTTGTGTAGCAGCACTTGTTCTTATGCTCAAGAATTCCGAAGAGAATGATTATGGCTCTGTTTCCTACAATGACCTTGGAGCTTTCAGGTATATATAACGTATCACCTACTCAAACAAGTAAAGAAAAATAAATGAAAAAGAATTTAGTCATATTATTCAATTATTTTTCTTTAATTTTGTTTAATTATGTGTGTGTCTAAACACTTTTTACTTGTGTTTGTGACCAAGAAAGAAATTCTCTTTAGTTTTGTAGATTGTAACAATGGTTTTGTCGCATGCGCACAAGTAAATTAATTTTGCAATATCCGTAAGTTTGTTTTCCACTCGTGAAGTAATAATTCTCATCGCATCTGATTTGATTCAATTGTGAAAATTGTGCATGGTGCAAGATTTATCTTACTTATGTACTATAAACTGCATGTAACGATCTATCAATTTACTCTCCAAAATTTACGAAATAACAATTCAATTCCTCTATTAAAATATTTTTTTAGTAAATATCCATCAAAACCACTAAATTCATTCTTTAATTTAAGAGACTAAATTATTATTTCATATATTTTAAAGACTACTGTACCCAAAAAAATAAAACTAAACTGATCAATTCTTAAAAATAAAAAAGACTAAATTGATCTATTTACTAATCATAGAATTTAACAATTGAAGATGCATTCTTGTGTTTCATACCAATTAATAATAAAGTTAGCCACTGTTTATAAATTATTTTTCCAATACTCCTCTCATCATGTCTAACACTATTGAATTTGGTGGGTAAATATAAATAGTAAGTGATTCAAATCGCTAGACGCTAATATCATATCAGATTTTTACATTGGACCAAATCAATGATTACAAAATCGATTTTTAAAGTAAAGGAGACTTTTTATATTGGATCTAACCAATGCTTACAAAATCGATGTGTAAAGTAAAGGAGACATATCTTTATAAGCTCAATTAAGGCTCTTTAGATTCTATGGAGTAAAATTTATATTGAGTGTAACTCCTCATCCTCAAATTCGATGCGTAAGAATGGAAGATTCACTCATTATATGCTATTTTTAAGTAGGGTTTTTCTAACCTGTGCAAGATTGCACATGGCATTAATCACCCTTTATCCTGTGCAATCTTGCACATGTTAGGAAAAACTCTTTTAAGTTTTCATCTCTTTTTTTATATGCTATTTTTAAGTTTTTATCTCTTTTAATTAAGCTTGATACTTAAGTTAACGATAAAATAATTTCAACAACCGCTTGTTGACTCTATTTTAATAACTACTACTACCTCCGTCCCGGTATAATTGACCTACTTTGGTTTTTCACACAGATTAAGAAAAGTGTATAAATAAAGGGGAAAGTGGAATATATTGTATTGGGAATGATAAAAGTAGTATTATTTAGTGTTATATTGTATTGGGAATGATGAAAGTTATATTGAAAATTGAAATGAGTCAGTTATTTTGGGACACTTTTTTTTAGAAAATGGGTCAGTTATTCCGGGACGGAGGGAGTAGTATTTCAGTACATGCAATAGACATTGTATATATCATGCTTTAGTCATTGATGGTGGCAAATGAAATTGGAATTTAGGACATTTAGTAAACGATTGGTTCTTGATAGTTGACTTCGAATATATATTTTGGTCAAACTAAATAATTTTGGTTAGTGATTGGGTTGTTGAATGTATGTAACGTTGTAGGTATTTGGTGCATGCAAATGGCATTTGCGCAGGTTACTCCTTACTTTCTGCTGTCGTTATTGCTGCCCCCCGCCCAACTCTGCTTCGTGCTTGGACTTTCTTTTTCCTTGACCAGGTTCCTCCCTTTTCTGTTCACACACACAAAATAATTTTTTGAGGCAATATACATAATATATTATATAACCTATATACTGTAATATGAATCTAGTCAATTCGTTATATTTTGTGTGTGGTACATGACAGGCTGATTAATAATCTAATTGAATGGAGAAAAATGGTACAAAATGGTAAAAGTTAAATCGAAAATGAAAACATCAAACATCTATAAGGCTAACCAATTAGTAAGGAACTAACTCCTAATCTATAACTTCCTACTCCCTCCGGTCTCAAATATAAGAAAAAATTCCTTTTTTAGGTTCATTGAGTAGTTAATGTATCTAGTCTACATTGTAAAGCAAATACATTAATTATTCAATGAACCTAAAAAATGAATCTTTTCTTATATTTGAGACCGGAGGGAGTATATATCTTACGCTATTTTATTCAAATTTTGTTGAAAAGATTATGTTACAACTCTATTTCCTTTTATAGTTAAGGAGGTACACTGAAGTCAAAGACACAACTATTCATAAACATGCTACTAAAAACGCACTATTGGCATGTTTAATAATTATGAAAGACATACTTGTGACATTTTTTTGACTATCATATCACATTATTTGCACACTTGACACCAAAAACAAAAATACAACTAATCATACACATGCATTACCATTATGTAAGATCAAATTAGTTATAATATTTGAAATATATGATCTATTGAGGTCACTACAAATCATCCGATCTTAATCCAACTACTAAAGTTGTAACAAAATATTTTGATTGTTGACAACCTAAATTTCAATTAAAAATATGCTTAGTGGATTAGATCGACCGTCAATAATCAACACATTTTTATATCTGTGCAATTTGTGGTGAGAACTTACCAAGTGTTGCTATTTCAATAATTGAACATCTCATACTACATAAGATAGCAAACCCGAAACTGTTTTTTGTCAAGCAAAACCAAACATGAAATGAAACTCAGGATATCTAATTCTCTTAGAAAAATTGAAATATAATATTTTTGTAATGATTTCTTTACAATAGGTACTAACATACATAATTTTGAGCGCCGGAGCTTCATCAATGGAGGTGGTGTACCTAGCTGAGAATGGAGACAGTGCAACAGTATGGAACTCAGCTTGTGGCTCTTTTGGTCAATTTTGTCATAAGGTCACAGCTTCAGTAGCTATAACATTTGTAGCACTTGTTTGCTATGTGATTCTTTCCATAATTTCCTCTTACAAGCTTTTCAGCAATTATGATGTCCCAGCAAGTTGCCCTAATACTACAGGCAATGACCACATTGCTCCAGCTTTCAATGGCTAG

Protein sequence

>MS.gene049677.t1

MMMEKGTGTVVSATRSPMQVMMAPAAATTGEELEGNTTSFLRTAETFLRLLPIGLCVAALVLMLKNSEENDYGSVSYNDLGAFRYLVHANGICAGYSLLSAVVIAAPRPTLLRAWTFFFLDQVLTYIILSAGASSMEVVYLAENGDSATVWNSACGSFGQFCHKVTASVAITFVALVCYVILSIISSYKLFSNYDVPASCPNTTGNDHIAPAFNG