Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049677.t1 | XP_003600618.2 | 95.4 | 217 | 7 | 2 | 2 | 215 | 1 | 217 | 1.10E-106 | 396 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049677.t1 | C6TCJ2 | 73.1 | 201 | 47 | 2 | 2 | 201 | 1 | 195 | 1.2e-75 | 284.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049677.t1 | G7J7X5 | 95.4 | 217 | 7 | 2 | 2 | 215 | 1 | 217 | 8.2e-107 | 396.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049677 | MS.gene05032 | 0.831129 | 1.99E-55 | -1.69E-46 |
| MS.gene049677 | MS.gene061583 | 0.966744 | 2.48E-126 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene034836 | MS.gene049677 | PPI |
| MS.gene81771 | MS.gene049677 | PPI |
| MS.gene049677 | MS.gene056920 | PPI |
| MS.gene065729 | MS.gene049677 | PPI |
| MS.gene034839 | MS.gene049677 | PPI |
| MS.gene034838 | MS.gene049677 | PPI |
| MS.gene81770 | MS.gene049677 | PPI |
| MS.gene056923 | MS.gene049677 | PPI |
| MS.gene065724 | MS.gene049677 | PPI |
| MS.gene056925 | MS.gene049677 | PPI |
| MS.gene81774 | MS.gene049677 | PPI |
| MS.gene056924 | MS.gene049677 | PPI |
| MS.gene056922 | MS.gene049677 | PPI |
| MS.gene034840 | MS.gene049677 | PPI |
| MS.gene065728 | MS.gene049677 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049677.t1 | MTR_3g064310 | 95.392 | 217 | 7 | 2 | 2 | 215 | 1 | 217 | 2.60e-151 | 419 |
| MS.gene049677.t1 | MTR_5g076480 | 62.150 | 214 | 75 | 3 | 3 | 215 | 1 | 209 | 4.88e-91 | 266 |
| MS.gene049677.t1 | MTR_0160s0040 | 33.537 | 164 | 107 | 2 | 36 | 198 | 14 | 176 | 2.08e-34 | 121 |
| MS.gene049677.t1 | MTR_2g026530 | 31.098 | 164 | 103 | 3 | 41 | 194 | 8 | 171 | 2.76e-19 | 82.0 |
| MS.gene049677.t1 | MTR_2g026530 | 31.098 | 164 | 103 | 3 | 41 | 194 | 28 | 191 | 3.18e-19 | 82.4 |
| MS.gene049677.t1 | MTR_0004s0210 | 29.452 | 146 | 93 | 4 | 42 | 182 | 6 | 146 | 3.47e-15 | 70.5 |
| MS.gene049677.t1 | MTR_0693s0030 | 25.517 | 145 | 91 | 2 | 60 | 194 | 36 | 173 | 3.64e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049677.t1 | AT1G17200 | 65.625 | 160 | 53 | 1 | 41 | 198 | 30 | 189 | 2.21e-73 | 221 |
| MS.gene049677.t1 | AT3G14380 | 51.266 | 158 | 75 | 2 | 42 | 197 | 21 | 178 | 2.72e-45 | 149 |
| MS.gene049677.t1 | AT1G17200 | 55.660 | 106 | 44 | 2 | 107 | 210 | 2 | 106 | 1.80e-34 | 119 |
| MS.gene049677.t1 | AT5G54980 | 37.059 | 170 | 99 | 4 | 41 | 207 | 29 | 193 | 3.51e-27 | 102 |
| MS.gene049677.t1 | AT4G16442 | 31.098 | 164 | 103 | 3 | 41 | 194 | 8 | 171 | 2.63e-16 | 73.9 |
| MS.gene049677.t1 | AT2G35760 | 28.342 | 187 | 118 | 4 | 33 | 203 | 13 | 199 | 1.52e-14 | 69.7 |
| MS.gene049677.t1 | AT1G03700 | 31.333 | 150 | 93 | 4 | 42 | 186 | 7 | 151 | 3.59e-14 | 68.2 |
| MS.gene049677.t1 | AT4G15630 | 28.319 | 113 | 79 | 1 | 80 | 190 | 77 | 189 | 1.06e-12 | 64.7 |
| MS.gene049677.t1 | AT2G27370 | 33.051 | 118 | 76 | 2 | 76 | 190 | 100 | 217 | 4.49e-12 | 63.5 |
| MS.gene049677.t1 | AT4G03540 | 31.148 | 122 | 74 | 4 | 61 | 177 | 26 | 142 | 1.07e-11 | 61.2 |
| MS.gene049677.t1 | AT5G15290 | 34.000 | 100 | 63 | 1 | 77 | 173 | 67 | 166 | 2.72e-11 | 60.8 |
| MS.gene049677.t1 | AT4G15620 | 26.549 | 113 | 81 | 1 | 80 | 190 | 77 | 189 | 5.89e-11 | 59.7 |
Find 55 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCAGCTTGTGGCTCTTT+TGG | 0.209207 | 3.3:-57893052 | MS.gene049677:CDS |
| ACAATGACCTTGGAGCTTTC+AGG | 0.215827 | 3.3:-57895918 | MS.gene049677:intron |
| TGGTCATTGCCTGTAGTATT+AGG | 0.217265 | 3.3:+57892905 | None:intergenic |
| AAGCTTGTAAGAGGAAATTA+TGG | 0.310588 | 3.3:+57892958 | None:intergenic |
| GCCCAACTCTGCTTCGTGCT+TGG | 0.360113 | 3.3:-57894217 | MS.gene049677:CDS |
| TATGTAACGTTGTAGGTATT+TGG | 0.361810 | 3.3:-57894303 | MS.gene049677:intron |
| AATTCCGAAGAGAATGATTA+TGG | 0.368832 | 3.3:-57895952 | MS.gene049677:CDS |
| GTAGTATTAGGGCAACTTGC+TGG | 0.376513 | 3.3:+57892917 | None:intergenic |
| TTCCTGCGTCTTCTTCCAAT+TGG | 0.380100 | 3.3:-57896009 | MS.gene049677:CDS |
| GCACCTGCTGCTGCTACAAC+TGG | 0.405372 | 3.3:-57896081 | MS.gene049677:CDS |
| AGCACGAAGCAGAGTTGGGC+GGG | 0.407289 | 3.3:+57894220 | None:intergenic |
| CACATTGCTCCAGCTTTCAA+TGG | 0.421348 | 3.3:-57892884 | MS.gene049677:CDS |
| GAAAGCTCCAAGGTCATTGT+AGG | 0.431102 | 3.3:+57895921 | None:intergenic |
| AATAACGACAGCAGAAAGTA+AGG | 0.447996 | 3.3:+57894250 | None:intergenic |
| GGTCATTGCCTGTAGTATTA+GGG | 0.451380 | 3.3:+57892906 | None:intergenic |
| AGCTACAAGGTCTCCAATGC+AGG | 0.451468 | 3.3:-57896112 | MS.gene049677:CDS |
| ATTGCTGAAAAGCTTGTAAG+AGG | 0.453945 | 3.3:+57892949 | None:intergenic |
| ATGGAGACAGTGCAACAGTA+TGG | 0.454804 | 3.3:-57893075 | MS.gene049677:CDS |
| TCTCCAGTTGTAGCAGCAGC+AGG | 0.461731 | 3.3:+57896078 | None:intergenic |
| GCTGCTACACAAAGACCAAT+TGG | 0.462827 | 3.3:+57895994 | None:intergenic |
| GTCTCCAATGCAGGTTATGA+TGG | 0.463901 | 3.3:-57896103 | MS.gene049677:CDS |
| GTCCAAGCACGAAGCAGAGT+TGG | 0.474514 | 3.3:+57894215 | None:intergenic |
| TCCAAGCACGAAGCAGAGTT+GGG | 0.479157 | 3.3:+57894216 | None:intergenic |
| CACGAAGCAGAGTTGGGCGG+GGG | 0.480033 | 3.3:+57894222 | None:intergenic |
| CATGCAAATGGCATTTGCGC+AGG | 0.482913 | 3.3:-57894278 | MS.gene049677:CDS |
| CACCTCCATTGATGAAGCTC+CGG | 0.491278 | 3.3:+57893114 | None:intergenic |
| GCACGAAGCAGAGTTGGGCG+GGG | 0.494079 | 3.3:+57894221 | None:intergenic |
| GAGCGCCGGAGCTTCATCAA+TGG | 0.504661 | 3.3:-57893119 | MS.gene049677:CDS |
| GTAAGCTAGCCATTGAAAGC+TGG | 0.510655 | 3.3:+57892875 | None:intergenic |
| TAGTATTAGGGCAACTTGCT+GGG | 0.513690 | 3.3:+57892918 | None:intergenic |
| TGCTACAACTGGAGAGGAGT+TGG | 0.520723 | 3.3:-57896070 | MS.gene049677:CDS |
| AGGTATTTGGTGCATGCAAA+TGG | 0.521302 | 3.3:-57894290 | MS.gene049677:CDS |
| CACTGTCTCCATTCTCAGCT+AGG | 0.525126 | 3.3:+57893086 | None:intergenic |
| TCTGTTTCCTACAATGACCT+TGG | 0.525544 | 3.3:-57895928 | MS.gene049677:CDS |
| AGAGCCATAATCATTCTCTT+CGG | 0.527126 | 3.3:+57895948 | None:intergenic |
| GTGGTGTACCTAGCTGAGAA+TGG | 0.532841 | 3.3:-57893094 | MS.gene049677:CDS |
| CGGAGCTTCATCAATGGAGG+TGG | 0.536593 | 3.3:-57893113 | MS.gene049677:CDS |
| ACACAATATAGTGATGATGA+TGG | 0.543875 | 3.3:-57896160 | None:intergenic |
| GGTGCCATCATAACCTGCAT+TGG | 0.545200 | 3.3:+57896099 | None:intergenic |
| GCAAGTTGCCCTAATACTAC+AGG | 0.548179 | 3.3:-57892914 | MS.gene049677:CDS |
| ACGAAGCAGAGTTGGGCGGG+GGG | 0.552378 | 3.3:+57894223 | None:intergenic |
| GTACTGTAGTTTCAGCTACA+AGG | 0.558505 | 3.3:-57896125 | MS.gene049677:CDS |
| CGCCGGAGCTTCATCAATGG+AGG | 0.596052 | 3.3:-57893116 | MS.gene049677:CDS |
| ATGATGATGGAGAAAGGTAC+TGG | 0.596215 | 3.3:-57896147 | MS.gene049677:CDS |
| TGTCTCAGCAGTGCGTAGGA+AGG | 0.600277 | 3.3:+57896032 | None:intergenic |
| AAAAGGGAGGAACCTGGTCA+AGG | 0.601094 | 3.3:+57894183 | None:intergenic |
| ATAGTGATGATGATGGAGAA+AGG | 0.601228 | 3.3:-57896153 | None:intergenic |
| AAGCACGAAGCAGAGTTGGG+CGG | 0.622018 | 3.3:+57894219 | None:intergenic |
| ATATATACCTGAAAGCTCCA+AGG | 0.630274 | 3.3:+57895911 | None:intergenic |
| GGAATGTCTCAGCAGTGCGT+AGG | 0.633276 | 3.3:+57896028 | None:intergenic |
| TGCTGCTGCTACAACTGGAG+AGG | 0.641197 | 3.3:-57896076 | MS.gene049677:CDS |
| GACCAATTGGAAGAAGACGC+AGG | 0.654347 | 3.3:+57896007 | None:intergenic |
| ACAACTGGAGAGGAGTTGGA+AGG | 0.657284 | 3.3:-57896066 | MS.gene049677:CDS |
| CATTGAAAGCTGGAGCAATG+TGG | 0.700472 | 3.3:+57892885 | None:intergenic |
| ACAGTATGGAACTCAGCTTG+TGG | 0.703926 | 3.3:-57893061 | MS.gene049677:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATATTTTTAATTGAAATTT+AGG | + | chr3.3:57895634-57895653 | None:intergenic | 10.0% |
| !!! | CTAAAAAAATATTTTAATAG+AGG | + | chr3.3:57893518-57893537 | None:intergenic | 10.0% |
| !! | AAATTAAAGAATGAATTTAG+TGG | + | chr3.3:57893557-57893576 | None:intergenic | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr3.3:57894435-57894454 | MS.gene049677:intron | 15.0% |
| !! | GAAAAATAATTTATAAACAG+TGG | + | chr3.3:57893753-57893772 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr3.3:57894434-57894453 | MS.gene049677:intron | 15.0% |
| !! | TGATTAATAATCTAATTGAA+TGG | - | chr3.3:57894984-57895003 | MS.gene049677:intron | 15.0% |
| !!! | AAAATCGATTTTTAAAGTAA+AGG | - | chr3.3:57893897-57893916 | MS.gene049677:intron | 15.0% |
| !!! | AAGAAAAGTGTATAAATAAA+GGG | - | chr3.3:57894370-57894389 | MS.gene049677:intron | 15.0% |
| !!! | AATTGTTATTTCGTAAATTT+TGG | + | chr3.3:57893490-57893509 | None:intergenic | 15.0% |
| !!! | ATTAGTTGTATTTTTGTTTT+TGG | + | chr3.3:57895475-57895494 | None:intergenic | 15.0% |
| !!! | ATTATATGCTATTTTTAAGT+AGG | - | chr3.3:57894088-57894107 | MS.gene049677:intron | 15.0% |
| !!! | CAGTTTAGTTTTATTTTTTT+GGG | + | chr3.3:57893623-57893642 | None:intergenic | 15.0% |
| !!! | TAAGAAAAAATTCCTTTTTT+AGG | - | chr3.3:57895132-57895151 | MS.gene049677:intron | 15.0% |
| !!! | TAAGAAAAGATTCATTTTTT+AGG | + | chr3.3:57895221-57895240 | None:intergenic | 15.0% |
| !!! | TAAGAAAAGTGTATAAATAA+AGG | - | chr3.3:57894369-57894388 | MS.gene049677:intron | 15.0% |
| !!! | TCAGTTTAGTTTTATTTTTT+TGG | + | chr3.3:57893624-57893643 | None:intergenic | 15.0% |
| !!! | TTATATGCTATTTTTAAGTA+GGG | - | chr3.3:57894089-57894108 | MS.gene049677:intron | 15.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr3.3:57894394-57894413 | MS.gene049677:intron | 20.0% |
| !! | ACTAATTTGATCTTACATAA+TGG | + | chr3.3:57895513-57895532 | None:intergenic | 20.0% |
| !! | AGATTCATATTACAGTATAT+AGG | + | chr3.3:57894925-57894944 | None:intergenic | 20.0% |
| !! | TATCTTTATAAGCTCAATTA+AGG | - | chr3.3:57893981-57894000 | MS.gene049677:intron | 20.0% |
| !! | TCAATTAAAAATATGCTTAG+TGG | - | chr3.3:57895639-57895658 | MS.gene049677:intron | 20.0% |
| !! | TGGCTAACTTTATTATTAAT+TGG | + | chr3.3:57893733-57893752 | None:intergenic | 20.0% |
| !! | TGTAATGATTTCTTTACAAT+AGG | - | chr3.3:57895866-57895885 | MS.gene049677:intron | 20.0% |
| !! | TTGAAATATATGATCTATTG+AGG | - | chr3.3:57895541-57895560 | MS.gene049677:intron | 20.0% |
| !!! | AAAAATGTGTTGATTATTGA+CGG | + | chr3.3:57895675-57895694 | None:intergenic | 20.0% |
| !!! | AAATAATTTTGGTTAGTGAT+TGG | - | chr3.3:57894690-57894709 | MS.gene049677:intron | 20.0% |
| !!! | AATAATTTTGGTTAGTGATT+GGG | - | chr3.3:57894691-57894710 | MS.gene049677:intron | 20.0% |
| !!! | ACACACAAAATAATTTTTTG+AGG | - | chr3.3:57894875-57894894 | MS.gene049677:intron | 20.0% |
| !!! | AGAAAAGTGTATAAATAAAG+GGG | - | chr3.3:57894371-57894390 | MS.gene049677:intron | 20.0% |
| !!! | ATCATATCAGATTTTTACAT+TGG | - | chr3.3:57893857-57893876 | MS.gene049677:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr3.3:57894504-57894523 | MS.gene049677:intron | 20.0% |
| !!! | TCTATTTCCTTTTATAGTTA+AGG | - | chr3.3:57895313-57895332 | MS.gene049677:intron | 20.0% |
| !!! | TTGACTTCGAATATATATTT+TGG | - | chr3.3:57894660-57894679 | MS.gene049677:intron | 20.0% |
| !!! | TTGGTCAAACTAAATAATTT+TGG | - | chr3.3:57894679-57894698 | MS.gene049677:intron | 20.0% |
| !!! | TTTTTTCTTATATTTGAGAC+CGG | + | chr3.3:57895122-57895141 | None:intergenic | 20.0% |
| ! | AAAATCGATGTGTAAAGTAA+AGG | - | chr3.3:57893953-57893972 | MS.gene049677:intron | 25.0% |
| ! | ACTAAAGAGAATTTCTTTCT+TGG | + | chr3.3:57893270-57893289 | None:intergenic | 25.0% |
| ! | ATGTCTAACACTATTGAATT+TGG | - | chr3.3:57893789-57893808 | MS.gene049677:intron | 25.0% |
| ! | ATTAAAATAGAGTCAACAAG+CGG | + | chr3.3:57894293-57894312 | None:intergenic | 25.0% |
| ! | ATTATTGAAATAGCAACACT+TGG | + | chr3.3:57895727-57895746 | None:intergenic | 25.0% |
| ! | GAAAACATCAAACATCTATA+AGG | - | chr3.3:57895046-57895065 | MS.gene049677:intron | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr3.3:57894393-57894412 | MS.gene049677:intron | 25.0% |
| ! | TCTAATTGAATGGAGAAAAA+TGG | - | chr3.3:57894994-57895013 | MS.gene049677:intron | 25.0% |
| ! | TTTAGTAGTTGGATTAAGAT+CGG | + | chr3.3:57895581-57895600 | None:intergenic | 25.0% |
| ! | TTTGTTACAACTTTAGTAGT+TGG | + | chr3.3:57895592-57895611 | None:intergenic | 25.0% |
| !! | AATTCGTTATATTTTGTGTG+TGG | - | chr3.3:57894949-57894968 | MS.gene049677:intron | 25.0% |
| !! | ATTTCCTTTTATAGTTAAGG+AGG | - | chr3.3:57895316-57895335 | MS.gene049677:intron | 25.0% |
| !! | GTAAAGGAGACTTTTTATAT+TGG | - | chr3.3:57893913-57893932 | MS.gene049677:intron | 25.0% |
| !! | TTGAAATGAGTCAGTTATTT+TGG | - | chr3.3:57894481-57894500 | MS.gene049677:intron | 25.0% |
| !! | TTTTATATCTGTGCAATTTG+TGG | - | chr3.3:57895691-57895710 | MS.gene049677:intron | 25.0% |
| !! | TTTTCTTTACTTGTTTGAGT+AGG | + | chr3.3:57893151-57893170 | None:intergenic | 25.0% |
| !! | TTTTGGTCAATTTTGTCATA+AGG | - | chr3.3:57895992-57896011 | MS.gene049677:CDS | 25.0% |
| !!! | AATGAATTTAGTGGTTTTGA+TGG | + | chr3.3:57893548-57893567 | None:intergenic | 25.0% |
| !!! | AGTTTTGTAGATTGTAACAA+TGG | - | chr3.3:57893287-57893306 | MS.gene049677:intron | 25.0% |
| !!! | CGATTTTGTAATCATTGATT+TGG | + | chr3.3:57893884-57893903 | None:intergenic | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr3.3:57894503-57894522 | MS.gene049677:intron | 25.0% |
| !!! | TCTTTTCTTATATTTGAGAC+CGG | - | chr3.3:57895231-57895250 | MS.gene049677:intron | 25.0% |
| !!! | TGAAATGAGTCAGTTATTTT+GGG | - | chr3.3:57894482-57894501 | MS.gene049677:intron | 25.0% |
| AAGCTTGTAAGAGGAAATTA+TGG | + | chr3.3:57896072-57896091 | None:intergenic | 30.0% | |
| AATTCCGAAGAGAATGATTA+TGG | - | chr3.3:57893075-57893094 | MS.gene049677:CDS | 30.0% | |
| ATAAGGCTAACCAATTAGTA+AGG | - | chr3.3:57895063-57895082 | MS.gene049677:intron | 30.0% | |
| CTAACACTATTGAATTTGGT+GGG | - | chr3.3:57893793-57893812 | MS.gene049677:intron | 30.0% | |
| CTACTCAATGAACCTAAAAA+AGG | + | chr3.3:57895147-57895166 | None:intergenic | 30.0% | |
| GGCAAATGAAATTGGAATTT+AGG | - | chr3.3:57894608-57894627 | MS.gene049677:intron | 30.0% | |
| TAGGACATTTAGTAAACGAT+TGG | - | chr3.3:57894627-57894646 | MS.gene049677:intron | 30.0% | |
| TATCATGCTTTAGTCATTGA+TGG | - | chr3.3:57894584-57894603 | MS.gene049677:intron | 30.0% | |
| TATGTAACGTTGTAGGTATT+TGG | - | chr3.3:57894724-57894743 | MS.gene049677:intron | 30.0% | |
| TCAATTGTGAAAATTGTGCA+TGG | - | chr3.3:57893404-57893423 | MS.gene049677:intron | 30.0% | |
| TCTAACACTATTGAATTTGG+TGG | - | chr3.3:57893792-57893811 | MS.gene049677:intron | 30.0% | |
| TGCTTGACAAAAAACAGTTT+CGG | + | chr3.3:57895781-57895800 | None:intergenic | 30.0% | |
| TGGAGAAAAATGGTACAAAA+TGG | - | chr3.3:57895004-57895023 | MS.gene049677:intron | 30.0% | |
| TGTACCTCCTTAACTATAAA+AGG | + | chr3.3:57895323-57895342 | None:intergenic | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr3.3:57894378-57894397 | MS.gene049677:intron | 30.0% | |
| TTAAGGCTCTTTAGATTCTA+TGG | - | chr3.3:57893998-57894017 | MS.gene049677:intron | 30.0% | |
| TTGAATGTATGTAACGTTGT+AGG | - | chr3.3:57894717-57894736 | MS.gene049677:intron | 30.0% | |
| AATAACGACAGCAGAAAGTA+AGG | + | chr3.3:57894780-57894799 | None:intergenic | 35.0% | |
| ACGAGTGGAAAACAAACTTA+CGG | + | chr3.3:57893352-57893371 | None:intergenic | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | - | chr3.3:57894517-57894536 | MS.gene049677:intron | 35.0% | |
| AGAGCCATAATCATTCTCTT+CGG | + | chr3.3:57893082-57893101 | None:intergenic | 35.0% | |
| ATAGTGTTAGACATGATGAG+AGG | + | chr3.3:57893783-57893802 | None:intergenic | 35.0% | |
| ATATATACCTGAAAGCTCCA+AGG | + | chr3.3:57893119-57893138 | None:intergenic | 35.0% | |
| ATTCTTACGCATCGAATTTG+AGG | + | chr3.3:57894055-57894074 | None:intergenic | 35.0% | |
| ATTGCTGAAAAGCTTGTAAG+AGG | + | chr3.3:57896081-57896100 | None:intergenic | 35.0% | |
| CAAAGTAGGTCAATTATACC+GGG | + | chr3.3:57894334-57894353 | None:intergenic | 35.0% | |
| CCAAACATGAAATGAAACTC+AGG | - | chr3.3:57895804-57895823 | MS.gene049677:intron | 35.0% | |
| CCAAAGTAGGTCAATTATAC+CGG | + | chr3.3:57894335-57894354 | None:intergenic | 35.0% | |
| CCTGAGTTTCATTTCATGTT+TGG | + | chr3.3:57895807-57895826 | None:intergenic | 35.0% | |
| GAGAATTATTACTTCACGAG+TGG | + | chr3.3:57893367-57893386 | None:intergenic | 35.0% | |
| GCTTGACAAAAAACAGTTTC+GGG | + | chr3.3:57895780-57895799 | None:intergenic | 35.0% | |
| GGAGTAGGAAGTTATAGATT+AGG | + | chr3.3:57895097-57895116 | None:intergenic | 35.0% | |
| GGAGTTAGTTCCTTACTAAT+TGG | + | chr3.3:57895076-57895095 | None:intergenic | 35.0% | |
| TCAAATTCGATGCGTAAGAA+TGG | - | chr3.3:57894054-57894073 | MS.gene049677:intron | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | + | chr3.3:57894348-57894367 | None:intergenic | 35.0% | |
| TGCTACTAAAAACGCACTAT+TGG | - | chr3.3:57895374-57895393 | MS.gene049677:intron | 35.0% | |
| TTGTGTGTGTGAACAGAAAA+GGG | + | chr3.3:57894863-57894882 | None:intergenic | 35.0% | |
| TTTGTGTGTGTGAACAGAAA+AGG | + | chr3.3:57894864-57894883 | None:intergenic | 35.0% | |
| ! | ACATACATAATTTTGAGCGC+CGG | - | chr3.3:57895894-57895913 | MS.gene049677:intron | 35.0% |
| ! | TTCTTATATTTGAGACCGGA+GGG | - | chr3.3:57895235-57895254 | MS.gene049677:intron | 35.0% |
| ! | TTCTTATATTTGAGACCGGA+GGG | + | chr3.3:57895254-57895235 | None:intergenic | 35.0% |
| ! | TTTCTTATATTTGAGACCGG+AGG | - | chr3.3:57895234-57895253 | MS.gene049677:intron | 35.0% |
| ! | TTTCTTATATTTGAGACCGG+AGG | + | chr3.3:57895253-57895234 | None:intergenic | 35.0% |
| !! | TTGATGGTGGCAAATGAAAT+TGG | - | chr3.3:57894600-57894619 | MS.gene049677:intron | 35.0% |
| !!! | CACATCGATTTTGTAAGCAT+TGG | + | chr3.3:57893945-57893964 | None:intergenic | 35.0% |
| CATGCTTTAGTCATTGATGG+TGG | - | chr3.3:57894587-57894606 | MS.gene049677:intron | 40.0% | |
| CCGGTATAATTGACCTACTT+TGG | - | chr3.3:57894332-57894351 | MS.gene049677:intron | 40.0% | |
| CGTAAGATATATACTCCCTC+CGG | + | chr3.3:57895253-57895272 | None:intergenic | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | - | chr3.3:57894518-57894537 | MS.gene049677:intron | 40.0% | |
| GCAAGATTGCACAGGATAAA+GGG | + | chr3.3:57894154-57894173 | None:intergenic | 40.0% | |
| GGTCATTGCCTGTAGTATTA+GGG | + | chr3.3:57896124-57896143 | None:intergenic | 40.0% | |
| GTACTGTAGTTTCAGCTACA+AGG | - | chr3.3:57892902-57892921 | MS.gene049677:CDS | 40.0% | |
| TAACATGTGCAAGATTGCAC+AGG | + | chr3.3:57894162-57894181 | None:intergenic | 40.0% | |
| TCTGTTTCCTACAATGACCT+TGG | - | chr3.3:57893099-57893118 | MS.gene049677:CDS | 40.0% | |
| TGCAAGATTGCACAGGATAA+AGG | + | chr3.3:57894155-57894174 | None:intergenic | 40.0% | |
| TGGTCATTGCCTGTAGTATT+AGG | + | chr3.3:57896125-57896144 | None:intergenic | 40.0% | |
| TGTGCAATCTTGCACATGTT+AGG | - | chr3.3:57894161-57894180 | MS.gene049677:intron | 40.0% | |
| ! | AGACATGATGAGAGGAGTAT+TGG | + | chr3.3:57893775-57893794 | None:intergenic | 40.0% |
| ! | GACTTTCTTTTTCCTTGACC+AGG | - | chr3.3:57894832-57894851 | MS.gene049677:intron | 40.0% |
| ! | TAGTATTAGGGCAACTTGCT+GGG | + | chr3.3:57896112-57896131 | None:intergenic | 40.0% |
| ! | TTTTGTGTGTGGTACATGAC+AGG | - | chr3.3:57894960-57894979 | MS.gene049677:intron | 40.0% |
| !! | AGGTATTTGGTGCATGCAAA+TGG | - | chr3.3:57894737-57894756 | MS.gene049677:intron | 40.0% |
| !! | ATGATGATGGAGAAAGGTAC+TGG | - | chr3.3:57892880-57892899 | MS.gene049677:CDS | 40.0% |
| AACCTGTGCAAGATTGCACA+TGG | - | chr3.3:57894119-57894138 | MS.gene049677:intron | 45.0% | |
| ACAATGACCTTGGAGCTTTC+AGG | - | chr3.3:57893109-57893128 | MS.gene049677:CDS | 45.0% | |
| ACAGTATGGAACTCAGCTTG+TGG | - | chr3.3:57895966-57895985 | MS.gene049677:CDS | 45.0% | |
| ACGCATCGAATTTGAGGATG+AGG | + | chr3.3:57894049-57894068 | None:intergenic | 45.0% | |
| ATGGAGACAGTGCAACAGTA+TGG | - | chr3.3:57895952-57895971 | MS.gene049677:CDS | 45.0% | |
| CACATTGCTCCAGCTTTCAA+TGG | - | chr3.3:57896143-57896162 | MS.gene049677:CDS | 45.0% | |
| CATTGAAAGCTGGAGCAATG+TGG | + | chr3.3:57896145-57896164 | None:intergenic | 45.0% | |
| CTATAACTTCCTACTCCCTC+CGG | - | chr3.3:57895100-57895119 | MS.gene049677:intron | 45.0% | |
| GAAAGCTCCAAGGTCATTGT+AGG | + | chr3.3:57893109-57893128 | None:intergenic | 45.0% | |
| GCAAGTTGCCCTAATACTAC+AGG | - | chr3.3:57896113-57896132 | MS.gene049677:CDS | 45.0% | |
| GCTGCTACACAAAGACCAAT+TGG | + | chr3.3:57893036-57893055 | None:intergenic | 45.0% | |
| GTAGGTCAATTATACCGGGA+CGG | + | chr3.3:57894330-57894349 | None:intergenic | 45.0% | |
| GTAGTATTAGGGCAACTTGC+TGG | + | chr3.3:57896113-57896132 | None:intergenic | 45.0% | |
| GTCTCCAATGCAGGTTATGA+TGG | - | chr3.3:57892924-57892943 | MS.gene049677:CDS | 45.0% | |
| TGTGTGTGAACAGAAAAGGG+AGG | + | chr3.3:57894860-57894879 | None:intergenic | 45.0% | |
| TTCCTGCGTCTTCTTCCAAT+TGG | - | chr3.3:57893018-57893037 | MS.gene049677:CDS | 45.0% | |
| ! | AACTCAGCTTGTGGCTCTTT+TGG | - | chr3.3:57895975-57895994 | MS.gene049677:CDS | 45.0% |
| AAAAGGGAGGAACCTGGTCA+AGG | + | chr3.3:57894847-57894866 | None:intergenic | 50.0% | |
| AAATACTACTCCCTCCGTCC+CGG | + | chr3.3:57894539-57894558 | None:intergenic | 50.0% | |
| AACTACTACTACCTCCGTCC+CGG | - | chr3.3:57894313-57894332 | MS.gene049677:intron | 50.0% | |
| ACAACTGGAGAGGAGTTGGA+AGG | - | chr3.3:57892961-57892980 | MS.gene049677:CDS | 50.0% | |
| AGCTACAAGGTCTCCAATGC+AGG | - | chr3.3:57892915-57892934 | MS.gene049677:CDS | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | - | chr3.3:57894522-57894541 | MS.gene049677:intron | 50.0% | |
| CACCTCCATTGATGAAGCTC+CGG | + | chr3.3:57895916-57895935 | None:intergenic | 50.0% | |
| CACTGTCTCCATTCTCAGCT+AGG | + | chr3.3:57895944-57895963 | None:intergenic | 50.0% | |
| CATGCAAATGGCATTTGCGC+AGG | - | chr3.3:57894749-57894768 | MS.gene049677:intron | 50.0% | |
| GAACAGAAAAGGGAGGAACC+TGG | + | chr3.3:57894853-57894872 | None:intergenic | 50.0% | |
| GACCAATTGGAAGAAGACGC+AGG | + | chr3.3:57893023-57893042 | None:intergenic | 50.0% | |
| GTGGTGTACCTAGCTGAGAA+TGG | - | chr3.3:57895933-57895952 | MS.gene049677:CDS | 50.0% | |
| TCCAAGCACGAAGCAGAGTT+GGG | + | chr3.3:57894814-57894833 | None:intergenic | 50.0% | |
| TGCCATGTGCAATCTTGCAC+AGG | + | chr3.3:57894124-57894143 | None:intergenic | 50.0% | |
| TGCTACAACTGGAGAGGAGT+TGG | - | chr3.3:57892957-57892976 | MS.gene049677:CDS | 50.0% | |
| ! | GGTGCCATCATAACCTGCAT+TGG | + | chr3.3:57892931-57892950 | None:intergenic | 50.0% |
| ! | TATTTGAGACCGGAGGGAGT+AGG | + | chr3.3:57895260-57895241 | None:intergenic | 50.0% |
| AAGCACGAAGCAGAGTTGGG+CGG | + | chr3.3:57894811-57894830 | None:intergenic | 55.0% | |
| CGGAGCTTCATCAATGGAGG+TGG | - | chr3.3:57895914-57895933 | MS.gene049677:intron | 55.0% | |
| GGAATGTCTCAGCAGTGCGT+AGG | + | chr3.3:57893002-57893021 | None:intergenic | 55.0% | |
| GGTCAATTATACCGGGACGG+AGG | + | chr3.3:57894327-57894346 | None:intergenic | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr3.3:57894526-57894545 | MS.gene049677:intron | 55.0% | |
| GTCCAAGCACGAAGCAGAGT+TGG | + | chr3.3:57894815-57894834 | None:intergenic | 55.0% | |
| TCTCCAGTTGTAGCAGCAGC+AGG | + | chr3.3:57892952-57892971 | None:intergenic | 55.0% | |
| TGCTGCTGCTACAACTGGAG+AGG | - | chr3.3:57892951-57892970 | MS.gene049677:CDS | 55.0% | |
| TGTCTCAGCAGTGCGTAGGA+AGG | + | chr3.3:57892998-57893017 | None:intergenic | 55.0% | |
| AGCACGAAGCAGAGTTGGGC+GGG | + | chr3.3:57894810-57894829 | None:intergenic | 60.0% | |
| CGCCGGAGCTTCATCAATGG+AGG | - | chr3.3:57895911-57895930 | MS.gene049677:intron | 60.0% | |
| GCACCTGCTGCTGCTACAAC+TGG | - | chr3.3:57892946-57892965 | MS.gene049677:CDS | 60.0% | |
| GCCCAACTCTGCTTCGTGCT+TGG | - | chr3.3:57894810-57894829 | MS.gene049677:intron | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr3.3:57894525-57894544 | MS.gene049677:intron | 60.0% | |
| !! | GAGCGCCGGAGCTTCATCAA+TGG | - | chr3.3:57895908-57895927 | MS.gene049677:intron | 60.0% |
| ACGAAGCAGAGTTGGGCGGG+GGG | + | chr3.3:57894807-57894826 | None:intergenic | 65.0% | |
| CACGAAGCAGAGTTGGGCGG+GGG | + | chr3.3:57894808-57894827 | None:intergenic | 65.0% | |
| GCACGAAGCAGAGTTGGGCG+GGG | + | chr3.3:57894809-57894828 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 57892880 | 57896169 | 57892880 | ID=MS.gene049677 |
| chr3.3 | mRNA | 57892880 | 57896169 | 57892880 | ID=MS.gene049677.t1;Parent=MS.gene049677 |
| chr3.3 | exon | 57895919 | 57896169 | 57895919 | ID=MS.gene049677.t1.exon1;Parent=MS.gene049677.t1 |
| chr3.3 | CDS | 57895919 | 57896169 | 57895919 | ID=cds.MS.gene049677.t1;Parent=MS.gene049677.t1 |
| chr3.3 | exon | 57894196 | 57894310 | 57894196 | ID=MS.gene049677.t1.exon2;Parent=MS.gene049677.t1 |
| chr3.3 | CDS | 57894196 | 57894310 | 57894196 | ID=cds.MS.gene049677.t1;Parent=MS.gene049677.t1 |
| chr3.3 | exon | 57892880 | 57893161 | 57892880 | ID=MS.gene049677.t1.exon3;Parent=MS.gene049677.t1 |
| chr3.3 | CDS | 57892880 | 57893161 | 57892880 | ID=cds.MS.gene049677.t1;Parent=MS.gene049677.t1 |
| Gene Sequence |
| Protein sequence |
