Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061583.t1 | XP_003600618.2 | 95.4 | 217 | 7 | 2 | 2 | 215 | 1 | 217 | 1.10E-106 | 396 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061583.t1 | C6TCJ2 | 73.1 | 201 | 47 | 2 | 2 | 201 | 1 | 195 | 1.2e-75 | 284.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061583.t1 | G7J7X5 | 95.4 | 217 | 7 | 2 | 2 | 215 | 1 | 217 | 8.2e-107 | 396.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049677 | MS.gene061583 | 0.966744 | 2.48E-126 | -1.69E-46 |
| MS.gene05032 | MS.gene061583 | 0.806132 | 9.54E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene061583 | MS.gene81771 | PPI |
| MS.gene061583 | MS.gene056922 | PPI |
| MS.gene061583 | MS.gene056924 | PPI |
| MS.gene061583 | MS.gene81770 | PPI |
| MS.gene061583 | MS.gene034839 | PPI |
| MS.gene061583 | MS.gene056920 | PPI |
| MS.gene061583 | MS.gene81774 | PPI |
| MS.gene061583 | MS.gene056925 | PPI |
| MS.gene034838 | MS.gene061583 | PPI |
| MS.gene061583 | MS.gene065728 | PPI |
| MS.gene061583 | MS.gene034840 | PPI |
| MS.gene061583 | MS.gene065729 | PPI |
| MS.gene061583 | MS.gene056923 | PPI |
| MS.gene061583 | MS.gene034836 | PPI |
| MS.gene061583 | MS.gene065724 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061583.t1 | MTR_3g064310 | 95.392 | 217 | 7 | 2 | 2 | 215 | 1 | 217 | 2.60e-151 | 419 |
| MS.gene061583.t1 | MTR_5g076480 | 62.150 | 214 | 75 | 3 | 3 | 215 | 1 | 209 | 4.88e-91 | 266 |
| MS.gene061583.t1 | MTR_0160s0040 | 33.537 | 164 | 107 | 2 | 36 | 198 | 14 | 176 | 2.08e-34 | 121 |
| MS.gene061583.t1 | MTR_2g026530 | 31.098 | 164 | 103 | 3 | 41 | 194 | 8 | 171 | 2.76e-19 | 82.0 |
| MS.gene061583.t1 | MTR_2g026530 | 31.098 | 164 | 103 | 3 | 41 | 194 | 28 | 191 | 3.18e-19 | 82.4 |
| MS.gene061583.t1 | MTR_0004s0210 | 29.452 | 146 | 93 | 4 | 42 | 182 | 6 | 146 | 3.47e-15 | 70.5 |
| MS.gene061583.t1 | MTR_0693s0030 | 25.517 | 145 | 91 | 2 | 60 | 194 | 36 | 173 | 3.64e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061583.t1 | AT1G17200 | 65.625 | 160 | 53 | 1 | 41 | 198 | 30 | 189 | 2.21e-73 | 221 |
| MS.gene061583.t1 | AT3G14380 | 51.266 | 158 | 75 | 2 | 42 | 197 | 21 | 178 | 2.72e-45 | 149 |
| MS.gene061583.t1 | AT1G17200 | 55.660 | 106 | 44 | 2 | 107 | 210 | 2 | 106 | 1.80e-34 | 119 |
| MS.gene061583.t1 | AT5G54980 | 37.059 | 170 | 99 | 4 | 41 | 207 | 29 | 193 | 3.51e-27 | 102 |
| MS.gene061583.t1 | AT4G16442 | 31.098 | 164 | 103 | 3 | 41 | 194 | 8 | 171 | 2.63e-16 | 73.9 |
| MS.gene061583.t1 | AT2G35760 | 28.342 | 187 | 118 | 4 | 33 | 203 | 13 | 199 | 1.52e-14 | 69.7 |
| MS.gene061583.t1 | AT1G03700 | 31.333 | 150 | 93 | 4 | 42 | 186 | 7 | 151 | 3.59e-14 | 68.2 |
| MS.gene061583.t1 | AT4G15630 | 28.319 | 113 | 79 | 1 | 80 | 190 | 77 | 189 | 1.06e-12 | 64.7 |
| MS.gene061583.t1 | AT2G27370 | 33.051 | 118 | 76 | 2 | 76 | 190 | 100 | 217 | 4.49e-12 | 63.5 |
| MS.gene061583.t1 | AT4G03540 | 31.148 | 122 | 74 | 4 | 61 | 177 | 26 | 142 | 1.07e-11 | 61.2 |
| MS.gene061583.t1 | AT5G15290 | 34.000 | 100 | 63 | 1 | 77 | 173 | 67 | 166 | 2.72e-11 | 60.8 |
| MS.gene061583.t1 | AT4G15620 | 26.549 | 113 | 81 | 1 | 80 | 190 | 77 | 189 | 5.89e-11 | 59.7 |
Find 54 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCAGCTTGTGGCTCTTT+TGG | 0.209207 | 3.2:-59871300 | MS.gene061583:CDS |
| ACAATGACCTTGGAGCTTTC+AGG | 0.215827 | 3.2:-59873783 | MS.gene061583:intron |
| TGGTCATTGCCTGTAGTATT+AGG | 0.217265 | 3.2:+59871153 | None:intergenic |
| AAGCTTGTAAGAGGAAATTA+TGG | 0.310588 | 3.2:+59871206 | None:intergenic |
| AATTCCGAAGAAAATGATTA+TGG | 0.329214 | 3.2:-59873817 | MS.gene061583:CDS |
| GCCCAACTCTGCTTCGTGCT+TGG | 0.360113 | 3.2:-59872314 | MS.gene061583:CDS |
| TATGTAACGTTGTAGGTATT+TGG | 0.361810 | 3.2:-59872400 | MS.gene061583:intron |
| GTAGTATTAGGGCAACTTGC+TGG | 0.376513 | 3.2:+59871165 | None:intergenic |
| TTCCTGCGTCTTCTTCCAAT+TGG | 0.380100 | 3.2:-59873874 | MS.gene061583:CDS |
| GCACCTGCTGCTGCTACAAC+TGG | 0.405372 | 3.2:-59873946 | MS.gene061583:CDS |
| AGCACGAAGCAGAGTTGGGC+GGG | 0.407289 | 3.2:+59872317 | None:intergenic |
| CACATTGCTCCAGCTTTCAA+TGG | 0.421348 | 3.2:-59871132 | MS.gene061583:CDS |
| GAAAGCTCCAAGGTCATTGT+AGG | 0.431102 | 3.2:+59873786 | None:intergenic |
| AATAACGACAGCAGAAAGTA+AGG | 0.447996 | 3.2:+59872347 | None:intergenic |
| GGTCATTGCCTGTAGTATTA+GGG | 0.451380 | 3.2:+59871154 | None:intergenic |
| AGCTACAAGGTCTCCAATGC+AGG | 0.451468 | 3.2:-59873977 | MS.gene061583:CDS |
| ATTGCTGAAAAGCTTGTAAG+AGG | 0.453945 | 3.2:+59871197 | None:intergenic |
| ATGGAGACAGTGCAACAGTA+TGG | 0.454804 | 3.2:-59871323 | MS.gene061583:CDS |
| TCTGTTTCCTACAATGACCT+TGG | 0.457093 | 3.2:-59873793 | MS.gene061583:CDS |
| TCTCCAGTTGTAGCAGCAGC+AGG | 0.461731 | 3.2:+59873943 | None:intergenic |
| GCTGCTACACAAAGACCAAT+TGG | 0.462827 | 3.2:+59873859 | None:intergenic |
| GTCTCCAATGCAGGTTATGA+TGG | 0.463901 | 3.2:-59873968 | MS.gene061583:CDS |
| GTCCAAGCACGAAGCAGAGT+TGG | 0.474514 | 3.2:+59872312 | None:intergenic |
| TCCAAGCACGAAGCAGAGTT+GGG | 0.479157 | 3.2:+59872313 | None:intergenic |
| CACGAAGCAGAGTTGGGCGG+GGG | 0.480033 | 3.2:+59872319 | None:intergenic |
| CACCTCCATTGATGAAGCTC+CGG | 0.491278 | 3.2:+59871362 | None:intergenic |
| GCACGAAGCAGAGTTGGGCG+GGG | 0.494079 | 3.2:+59872318 | None:intergenic |
| GAGCGCCGGAGCTTCATCAA+TGG | 0.504661 | 3.2:-59871367 | MS.gene061583:CDS |
| GTAAGCTAGCCATTGAAAGC+TGG | 0.510655 | 3.2:+59871123 | None:intergenic |
| TAGTATTAGGGCAACTTGCT+GGG | 0.513690 | 3.2:+59871166 | None:intergenic |
| TGCTACAACTGGAGAGGAGT+TGG | 0.520723 | 3.2:-59873935 | MS.gene061583:CDS |
| AGGTATTTGGTGCATGCAAA+TGG | 0.521302 | 3.2:-59872387 | MS.gene061583:CDS |
| CACTGTCTCCATTCTCAGCT+AGG | 0.525126 | 3.2:+59871334 | None:intergenic |
| CATGCAAATGGCATTTGTGC+AGG | 0.530637 | 3.2:-59872375 | MS.gene061583:CDS |
| GTGGTGTACCTAGCTGAGAA+TGG | 0.532841 | 3.2:-59871342 | MS.gene061583:CDS |
| CGGAGCTTCATCAATGGAGG+TGG | 0.536593 | 3.2:-59871361 | MS.gene061583:CDS |
| ACACAATATAGTGATGATGA+TGG | 0.543875 | 3.2:-59874025 | None:intergenic |
| GGTGCCATCATAACCTGCAT+TGG | 0.545200 | 3.2:+59873964 | None:intergenic |
| GCAAGTTGCCCTAATACTAC+AGG | 0.548179 | 3.2:-59871162 | MS.gene061583:CDS |
| ACGAAGCAGAGTTGGGCGGG+GGG | 0.552378 | 3.2:+59872320 | None:intergenic |
| GTACTGTAGTTTCAGCTACA+AGG | 0.558505 | 3.2:-59873990 | MS.gene061583:CDS |
| CGCCGGAGCTTCATCAATGG+AGG | 0.596052 | 3.2:-59871364 | MS.gene061583:CDS |
| ATGATGATGGAGAAAGGTAC+TGG | 0.596215 | 3.2:-59874012 | MS.gene061583:CDS |
| AAAAGGGAGGAACCTGGTCA+AGG | 0.599632 | 3.2:+59872280 | None:intergenic |
| TGTCTCAGCAGTGCGTAGGA+AGG | 0.600277 | 3.2:+59873897 | None:intergenic |
| ATAGTGATGATGATGGAGAA+AGG | 0.601228 | 3.2:-59874018 | None:intergenic |
| AAGCACGAAGCAGAGTTGGG+CGG | 0.622018 | 3.2:+59872316 | None:intergenic |
| ATATATACCTGAAAGCTCCA+AGG | 0.630274 | 3.2:+59873776 | None:intergenic |
| GGAATGTCTCAGCAGTGCGT+AGG | 0.633276 | 3.2:+59873893 | None:intergenic |
| TGCTGCTGCTACAACTGGAG+AGG | 0.641197 | 3.2:-59873941 | MS.gene061583:CDS |
| GACCAATTGGAAGAAGACGC+AGG | 0.654347 | 3.2:+59873872 | None:intergenic |
| ACAACTGGAGAGGAGTTGGA+AGG | 0.657284 | 3.2:-59873931 | MS.gene061583:CDS |
| CATTGAAAGCTGGAGCAATG+TGG | 0.700472 | 3.2:+59871133 | None:intergenic |
| ACAGTATGGAACTCAGCTTG+TGG | 0.703926 | 3.2:-59871309 | MS.gene061583:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATATTTTTAATTGAAATTT+AGG | + | chr3.2:59873499-59873518 | None:intergenic | 10.0% |
| !!! | CTAAAAAAATATTTTAATAG+AGG | + | chr3.2:59871766-59871785 | None:intergenic | 10.0% |
| !! | AAATTAAAGAATGAATTTAG+TGG | + | chr3.2:59871805-59871824 | None:intergenic | 15.0% |
| !! | GAAAAATAATTTATAAACAG+TGG | + | chr3.2:59872001-59872020 | None:intergenic | 15.0% |
| !! | TGATTAATAATCTAATTGAA+TGG | - | chr3.2:59873000-59873019 | MS.gene061583:intron | 15.0% |
| !!! | AATTGTTATTTCGTAAATTT+TGG | + | chr3.2:59871738-59871757 | None:intergenic | 15.0% |
| !!! | ATTAGTTGTATTTTTGTTTT+TGG | + | chr3.2:59873340-59873359 | None:intergenic | 15.0% |
| !!! | ATTATATGCTATTTTTAAGT+AGG | - | chr3.2:59872336-59872355 | MS.gene061583:CDS | 15.0% |
| !!! | CAGTTTAGTTTTATTTTTTT+GGG | + | chr3.2:59871871-59871890 | None:intergenic | 15.0% |
| !!! | TCAGTTTAGTTTTATTTTTT+TGG | + | chr3.2:59871872-59871891 | None:intergenic | 15.0% |
| !!! | TTATATGCTATTTTTAAGTA+GGG | - | chr3.2:59872337-59872356 | MS.gene061583:CDS | 15.0% |
| !! | ACTAATTTGATCTTACATAA+TGG | + | chr3.2:59873378-59873397 | None:intergenic | 20.0% |
| !! | AGATTCATATTACAGTATAT+AGG | + | chr3.2:59872941-59872960 | None:intergenic | 20.0% |
| !! | TAAAATAGCGTAAGATATAT+AGG | + | chr3.2:59873128-59873147 | None:intergenic | 20.0% |
| !! | TATATAGGAAGTTATAGATT+AGG | + | chr3.2:59873113-59873132 | None:intergenic | 20.0% |
| !! | TATCTTTATAAGCTCAATTA+AGG | - | chr3.2:59872229-59872248 | MS.gene061583:intron | 20.0% |
| !! | TCAATTAAAAATATGCTTAG+TGG | - | chr3.2:59873504-59873523 | MS.gene061583:intron | 20.0% |
| !! | TGGCTAACTTTATTATTAAT+TGG | + | chr3.2:59871981-59872000 | None:intergenic | 20.0% |
| !! | TGTAATGATTTCTTTACAAT+AGG | - | chr3.2:59873731-59873750 | MS.gene061583:intron | 20.0% |
| !!! | AAAAATGTGTTGATTATTGA+CGG | + | chr3.2:59873540-59873559 | None:intergenic | 20.0% |
| !!! | AAAATCGATTTGTAAAGTAA+AGG | - | chr3.2:59872145-59872164 | MS.gene061583:intron | 20.0% |
| !!! | AAATAATTTTGGTTAGTGAT+TGG | - | chr3.2:59872706-59872725 | MS.gene061583:intron | 20.0% |
| !!! | AATAATTTTGGTTAGTGATT+GGG | - | chr3.2:59872707-59872726 | MS.gene061583:intron | 20.0% |
| !!! | ACACACAAAATAATTTTTTG+AGG | - | chr3.2:59872891-59872910 | MS.gene061583:intron | 20.0% |
| !!! | ACTATTTCCTTTTATAGTTA+AGG | - | chr3.2:59873178-59873197 | MS.gene061583:intron | 20.0% |
| !!! | ATCATATCAGATTTTTACAT+TGG | - | chr3.2:59872105-59872124 | MS.gene061583:intron | 20.0% |
| !!! | GTAAAGGATACTTTTTATAT+TGG | - | chr3.2:59872161-59872180 | MS.gene061583:intron | 20.0% |
| !!! | TTGACTTCGAATATATATTT+TGG | - | chr3.2:59872676-59872695 | MS.gene061583:intron | 20.0% |
| !!! | TTGGTCAAACTAAATAATTT+TGG | - | chr3.2:59872695-59872714 | MS.gene061583:intron | 20.0% |
| ! | AAAATCGATGTGTAAAGTAA+AGG | - | chr3.2:59872201-59872220 | MS.gene061583:intron | 25.0% |
| ! | AATTCCGAAGAAAATGATTA+TGG | - | chr3.2:59871323-59871342 | MS.gene061583:CDS | 25.0% |
| ! | ACTAAAGAGAATTTCTTTCT+TGG | + | chr3.2:59871518-59871537 | None:intergenic | 25.0% |
| ! | ATGTCTAACACTATTGAATT+TGG | - | chr3.2:59872037-59872056 | MS.gene061583:intron | 25.0% |
| ! | ATTAAAATAGAGTCAACAAG+CGG | + | chr3.2:59872541-59872560 | None:intergenic | 25.0% |
| ! | ATTATTGAAATAGCAACACT+TGG | + | chr3.2:59873592-59873611 | None:intergenic | 25.0% |
| ! | GAAAACATCAAACATCTATA+AGG | - | chr3.2:59873062-59873081 | MS.gene061583:intron | 25.0% |
| ! | TCTAATTGAATGGAGAAAAA+TGG | - | chr3.2:59873010-59873029 | MS.gene061583:intron | 25.0% |
| ! | TTTAGTAGTTGGATTAAGAT+CGG | + | chr3.2:59873446-59873465 | None:intergenic | 25.0% |
| ! | TTTGTTACAACTTTAGTAGT+TGG | + | chr3.2:59873457-59873476 | None:intergenic | 25.0% |
| !! | AATTCGTTATATTTTGTGTG+TGG | - | chr3.2:59872965-59872984 | MS.gene061583:intron | 25.0% |
| !! | AGAACCATAATCATTTTCTT+CGG | + | chr3.2:59871330-59871349 | None:intergenic | 25.0% |
| !! | ATTTCCTTTTATAGTTAAGG+AGG | - | chr3.2:59873181-59873200 | MS.gene061583:intron | 25.0% |
| !! | TTTTATATCTGTGCAATTTG+TGG | - | chr3.2:59873556-59873575 | MS.gene061583:intron | 25.0% |
| !! | TTTTCTTTACTTGTTTGAGT+AGG | + | chr3.2:59871399-59871418 | None:intergenic | 25.0% |
| !! | TTTTGGTCAATTTTGTCATA+AGG | - | chr3.2:59873857-59873876 | MS.gene061583:CDS | 25.0% |
| !!! | AATGAATTTAGTGGTTTTGA+TGG | + | chr3.2:59871796-59871815 | None:intergenic | 25.0% |
| !!! | AGTTTTGTAGATTGTAACAA+TGG | - | chr3.2:59871535-59871554 | MS.gene061583:intron | 25.0% |
| !!! | CGATTTTGTAATCATTGATT+TGG | + | chr3.2:59872132-59872151 | None:intergenic | 25.0% |
| AAGCTTGTAAGAGGAAATTA+TGG | + | chr3.2:59873937-59873956 | None:intergenic | 30.0% | |
| ATAAGGCTAACCAATTAGTA+AGG | - | chr3.2:59873079-59873098 | MS.gene061583:intron | 30.0% | |
| CTAACACTATTGAATTTGGT+GGG | - | chr3.2:59872041-59872060 | MS.gene061583:intron | 30.0% | |
| GGCAAATGAAATTGGAATTT+AGG | - | chr3.2:59872624-59872643 | MS.gene061583:intron | 30.0% | |
| TAGGACATTTAGTAAACGAT+TGG | - | chr3.2:59872643-59872662 | MS.gene061583:intron | 30.0% | |
| TATCATGCTTTAGTCATTGA+TGG | - | chr3.2:59872600-59872619 | MS.gene061583:intron | 30.0% | |
| TATGTAACGTTGTAGGTATT+TGG | - | chr3.2:59872740-59872759 | MS.gene061583:intron | 30.0% | |
| TCAATTGTGAAAATTGTGCA+TGG | - | chr3.2:59871652-59871671 | MS.gene061583:intron | 30.0% | |
| TCTAACACTATTGAATTTGG+TGG | - | chr3.2:59872040-59872059 | MS.gene061583:intron | 30.0% | |
| TGCTTGACAAAAAACAGTTT+CGG | + | chr3.2:59873646-59873665 | None:intergenic | 30.0% | |
| TGGAGAAAAATGGTACAAAA+TGG | - | chr3.2:59873020-59873039 | MS.gene061583:intron | 30.0% | |
| TGTACCTCCTTAACTATAAA+AGG | + | chr3.2:59873188-59873207 | None:intergenic | 30.0% | |
| TTAAGGCTCTTTAGATTCTA+TGG | - | chr3.2:59872246-59872265 | MS.gene061583:intron | 30.0% | |
| TTGAATGTATGTAACGTTGT+AGG | - | chr3.2:59872733-59872752 | MS.gene061583:intron | 30.0% | |
| AATAACGACAGCAGAAAGTA+AGG | + | chr3.2:59872796-59872815 | None:intergenic | 35.0% | |
| ACGAGTGGAAAACAAACTTA+CGG | + | chr3.2:59871600-59871619 | None:intergenic | 35.0% | |
| ATAGTGTTAGACATGATGAG+AGG | + | chr3.2:59872031-59872050 | None:intergenic | 35.0% | |
| ATATATACCTGAAAGCTCCA+AGG | + | chr3.2:59871367-59871386 | None:intergenic | 35.0% | |
| ATTCTTACGCATCGAATTTG+AGG | + | chr3.2:59872303-59872322 | None:intergenic | 35.0% | |
| ATTGCTGAAAAGCTTGTAAG+AGG | + | chr3.2:59873946-59873965 | None:intergenic | 35.0% | |
| CCAAACATGAAATGAAACTC+AGG | - | chr3.2:59873669-59873688 | MS.gene061583:intron | 35.0% | |
| CCTGAGTTTCATTTCATGTT+TGG | + | chr3.2:59873672-59873691 | None:intergenic | 35.0% | |
| GAGAATTATTACTTCACGAG+TGG | + | chr3.2:59871615-59871634 | None:intergenic | 35.0% | |
| GCTTGACAAAAAACAGTTTC+GGG | + | chr3.2:59873645-59873664 | None:intergenic | 35.0% | |
| GGAGTTAGTTCCTTACTAAT+TGG | + | chr3.2:59873092-59873111 | None:intergenic | 35.0% | |
| TCAAATTCGATGCGTAAGAA+TGG | - | chr3.2:59872302-59872321 | MS.gene061583:CDS | 35.0% | |
| TGCTACTAAAAACGCACTAT+TGG | - | chr3.2:59873239-59873258 | MS.gene061583:intron | 35.0% | |
| ! | ACATACATAATTTTGAGCGC+CGG | - | chr3.2:59873759-59873778 | MS.gene061583:intron | 35.0% |
| !! | TTGATGGTGGCAAATGAAAT+TGG | - | chr3.2:59872616-59872635 | MS.gene061583:intron | 35.0% |
| !!! | CACATCGATTTTGTAAGCAT+TGG | + | chr3.2:59872193-59872212 | None:intergenic | 35.0% |
| CATGCTTTAGTCATTGATGG+TGG | - | chr3.2:59872603-59872622 | MS.gene061583:intron | 40.0% | |
| GCAAGATTGCACAGGATAAA+GGG | + | chr3.2:59872402-59872421 | None:intergenic | 40.0% | |
| GGTCATTGCCTGTAGTATTA+GGG | + | chr3.2:59873989-59874008 | None:intergenic | 40.0% | |
| GTACTGTAGTTTCAGCTACA+AGG | - | chr3.2:59871150-59871169 | MS.gene061583:CDS | 40.0% | |
| TAACATGTGCAAGATTGCAC+AGG | + | chr3.2:59872410-59872429 | None:intergenic | 40.0% | |
| TCTGTTTCCTACAATGACCT+TGG | - | chr3.2:59871347-59871366 | MS.gene061583:CDS | 40.0% | |
| TGCAAGATTGCACAGGATAA+AGG | + | chr3.2:59872403-59872422 | None:intergenic | 40.0% | |
| TGGTCATTGCCTGTAGTATT+AGG | + | chr3.2:59873990-59874009 | None:intergenic | 40.0% | |
| TGTGCAATCTTGCACATGTT+AGG | - | chr3.2:59872409-59872428 | MS.gene061583:intron | 40.0% | |
| TTGTGTGTGTGACCAGAAAA+GGG | + | chr3.2:59872879-59872898 | None:intergenic | 40.0% | |
| TTTGTGTGTGTGACCAGAAA+AGG | + | chr3.2:59872880-59872899 | None:intergenic | 40.0% | |
| ! | AGACATGATGAGAGGAGTAT+TGG | + | chr3.2:59872023-59872042 | None:intergenic | 40.0% |
| ! | GACTTTCTTTTTCCTTGACC+AGG | - | chr3.2:59872848-59872867 | MS.gene061583:intron | 40.0% |
| ! | TAGTATTAGGGCAACTTGCT+GGG | + | chr3.2:59873977-59873996 | None:intergenic | 40.0% |
| ! | TTTTGTGTGTGGTACATGAC+AGG | - | chr3.2:59872976-59872995 | MS.gene061583:intron | 40.0% |
| !! | AGGTATTTGGTGCATGCAAA+TGG | - | chr3.2:59872753-59872772 | MS.gene061583:intron | 40.0% |
| !! | ATGATGATGGAGAAAGGTAC+TGG | - | chr3.2:59871128-59871147 | MS.gene061583:CDS | 40.0% |
| ACAATGACCTTGGAGCTTTC+AGG | - | chr3.2:59871357-59871376 | MS.gene061583:CDS | 45.0% | |
| ACAGTATGGAACTCAGCTTG+TGG | - | chr3.2:59873831-59873850 | MS.gene061583:CDS | 45.0% | |
| ACGCATCGAATTTGAGGATG+AGG | + | chr3.2:59872297-59872316 | None:intergenic | 45.0% | |
| ATGGAGACAGTGCAACAGTA+TGG | - | chr3.2:59873817-59873836 | MS.gene061583:CDS | 45.0% | |
| CACATTGCTCCAGCTTTCAA+TGG | - | chr3.2:59874008-59874027 | MS.gene061583:CDS | 45.0% | |
| CATGCAAATGGCATTTGTGC+AGG | - | chr3.2:59872765-59872784 | MS.gene061583:intron | 45.0% | |
| CATTGAAAGCTGGAGCAATG+TGG | + | chr3.2:59874010-59874029 | None:intergenic | 45.0% | |
| GAAAGCTCCAAGGTCATTGT+AGG | + | chr3.2:59871357-59871376 | None:intergenic | 45.0% | |
| GCAAGTTGCCCTAATACTAC+AGG | - | chr3.2:59873978-59873997 | MS.gene061583:CDS | 45.0% | |
| GCTGCTACACAAAGACCAAT+TGG | + | chr3.2:59871284-59871303 | None:intergenic | 45.0% | |
| GTAGTATTAGGGCAACTTGC+TGG | + | chr3.2:59873978-59873997 | None:intergenic | 45.0% | |
| GTCTCCAATGCAGGTTATGA+TGG | - | chr3.2:59871172-59871191 | MS.gene061583:CDS | 45.0% | |
| TGTCATGTGCAATCTTGCAC+AGG | + | chr3.2:59872372-59872391 | None:intergenic | 45.0% | |
| TTCCTGCGTCTTCTTCCAAT+TGG | - | chr3.2:59871266-59871285 | MS.gene061583:CDS | 45.0% | |
| ! | AACTCAGCTTGTGGCTCTTT+TGG | - | chr3.2:59873840-59873859 | MS.gene061583:CDS | 45.0% |
| AAAAGGGAGGAACCTGGTCA+AGG | + | chr3.2:59872863-59872882 | None:intergenic | 50.0% | |
| ACAACTGGAGAGGAGTTGGA+AGG | - | chr3.2:59871209-59871228 | MS.gene061583:CDS | 50.0% | |
| AGCTACAAGGTCTCCAATGC+AGG | - | chr3.2:59871163-59871182 | MS.gene061583:CDS | 50.0% | |
| CACCTCCATTGATGAAGCTC+CGG | + | chr3.2:59873781-59873800 | None:intergenic | 50.0% | |
| CACTGTCTCCATTCTCAGCT+AGG | + | chr3.2:59873809-59873828 | None:intergenic | 50.0% | |
| GACCAATTGGAAGAAGACGC+AGG | + | chr3.2:59871271-59871290 | None:intergenic | 50.0% | |
| GTGGTGTACCTAGCTGAGAA+TGG | - | chr3.2:59873798-59873817 | MS.gene061583:CDS | 50.0% | |
| TCCAAGCACGAAGCAGAGTT+GGG | + | chr3.2:59872830-59872849 | None:intergenic | 50.0% | |
| TGCTACAACTGGAGAGGAGT+TGG | - | chr3.2:59871205-59871224 | MS.gene061583:CDS | 50.0% | |
| TGTGTGTGACCAGAAAAGGG+AGG | + | chr3.2:59872876-59872895 | None:intergenic | 50.0% | |
| ! | GGTGCCATCATAACCTGCAT+TGG | + | chr3.2:59871179-59871198 | None:intergenic | 50.0% |
| AAGCACGAAGCAGAGTTGGG+CGG | + | chr3.2:59872827-59872846 | None:intergenic | 55.0% | |
| CGGAGCTTCATCAATGGAGG+TGG | - | chr3.2:59873779-59873798 | MS.gene061583:intron | 55.0% | |
| GACCAGAAAAGGGAGGAACC+TGG | + | chr3.2:59872869-59872888 | None:intergenic | 55.0% | |
| GGAATGTCTCAGCAGTGCGT+AGG | + | chr3.2:59871250-59871269 | None:intergenic | 55.0% | |
| GTCCAAGCACGAAGCAGAGT+TGG | + | chr3.2:59872831-59872850 | None:intergenic | 55.0% | |
| TCTCCAGTTGTAGCAGCAGC+AGG | + | chr3.2:59871200-59871219 | None:intergenic | 55.0% | |
| TGCTGCTGCTACAACTGGAG+AGG | - | chr3.2:59871199-59871218 | MS.gene061583:CDS | 55.0% | |
| TGTCTCAGCAGTGCGTAGGA+AGG | + | chr3.2:59871246-59871265 | None:intergenic | 55.0% | |
| ! | GACCAGGTTCCTCCCTTTTC+TGG | - | chr3.2:59872864-59872883 | MS.gene061583:intron | 55.0% |
| AGCACGAAGCAGAGTTGGGC+GGG | + | chr3.2:59872826-59872845 | None:intergenic | 60.0% | |
| CGCCGGAGCTTCATCAATGG+AGG | - | chr3.2:59873776-59873795 | MS.gene061583:intron | 60.0% | |
| GCACCTGCTGCTGCTACAAC+TGG | - | chr3.2:59871194-59871213 | MS.gene061583:CDS | 60.0% | |
| GCCCAACTCTGCTTCGTGCT+TGG | - | chr3.2:59872826-59872845 | MS.gene061583:intron | 60.0% | |
| !! | GAGCGCCGGAGCTTCATCAA+TGG | - | chr3.2:59873773-59873792 | MS.gene061583:intron | 60.0% |
| ACGAAGCAGAGTTGGGCGGG+GGG | + | chr3.2:59872823-59872842 | None:intergenic | 65.0% | |
| CACGAAGCAGAGTTGGGCGG+GGG | + | chr3.2:59872824-59872843 | None:intergenic | 65.0% | |
| GCACGAAGCAGAGTTGGGCG+GGG | + | chr3.2:59872825-59872844 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 59871128 | 59874034 | 59871128 | ID=MS.gene061583 |
| chr3.2 | mRNA | 59871128 | 59874034 | 59871128 | ID=MS.gene061583.t1;Parent=MS.gene061583 |
| chr3.2 | exon | 59873784 | 59874034 | 59873784 | ID=MS.gene061583.t1.exon1;Parent=MS.gene061583.t1 |
| chr3.2 | CDS | 59873784 | 59874034 | 59873784 | ID=cds.MS.gene061583.t1;Parent=MS.gene061583.t1 |
| chr3.2 | exon | 59872293 | 59872407 | 59872293 | ID=MS.gene061583.t1.exon2;Parent=MS.gene061583.t1 |
| chr3.2 | CDS | 59872293 | 59872407 | 59872293 | ID=cds.MS.gene061583.t1;Parent=MS.gene061583.t1 |
| chr3.2 | exon | 59871128 | 59871409 | 59871128 | ID=MS.gene061583.t1.exon3;Parent=MS.gene061583.t1 |
| chr3.2 | CDS | 59871128 | 59871409 | 59871128 | ID=cds.MS.gene061583.t1;Parent=MS.gene061583.t1 |
| Gene Sequence |
| Protein sequence |
