Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052329.t1 | XP_003607336.1 | 80.9 | 644 | 75 | 3 | 1 | 637 | 1 | 603 | 1.80E-264 | 921.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052329.t1 | G7JQN1 | 80.9 | 644 | 75 | 3 | 1 | 637 | 1 | 603 | 1.3e-264 | 921.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050381 | MS.gene052329 | 0.81436 | 1.60E-51 | -1.69E-46 |
| MS.gene050883 | MS.gene052329 | 0.837643 | 4.61E-57 | -1.69E-46 |
| MS.gene052329 | MS.gene056310 | 0.810115 | 1.35E-50 | -1.69E-46 |
| MS.gene052329 | MS.gene056311 | 0.811362 | 7.27E-51 | -1.69E-46 |
| MS.gene052329 | MS.gene065465 | 0.812771 | 3.59E-51 | -1.69E-46 |
| MS.gene052329 | MS.gene07004 | 0.82569 | 4.09E-54 | -1.69E-46 |
| MS.gene052329 | MS.gene072476 | 0.834406 | 3.05E-56 | -1.69E-46 |
| MS.gene052329 | MS.gene072806 | 0.805054 | 1.61E-49 | -1.69E-46 |
| MS.gene052329 | MS.gene21577 | 0.814008 | 1.92E-51 | -1.69E-46 |
| MS.gene052329 | MS.gene21870 | 0.810818 | 9.54E-51 | -1.69E-46 |
| MS.gene052329 | MS.gene29342 | 0.827599 | 1.43E-54 | -1.69E-46 |
| MS.gene052329 | MS.gene44722 | 0.822235 | 2.64E-53 | -1.69E-46 |
| MS.gene052329 | MS.gene49181 | 0.806268 | 8.93E-50 | -1.69E-46 |
| MS.gene052329 | MS.gene51018 | 0.813443 | 2.55E-51 | -1.69E-46 |
| MS.gene052329 | MS.gene55013 | 0.809485 | 1.85E-50 | -1.69E-46 |
| MS.gene052329 | MS.gene78593 | 0.829309 | 5.53E-55 | -1.69E-46 |
| MS.gene052329 | MS.gene79519 | 0.800449 | 1.43E-48 | -1.69E-46 |
| MS.gene052329 | MS.gene88886 | 0.804715 | 1.89E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052329.t1 | MTR_4g076640 | 83.540 | 644 | 58 | 3 | 1 | 637 | 1 | 603 | 0.0 | 1045 |
| MS.gene052329.t1 | MTR_4g076620 | 68.885 | 646 | 169 | 7 | 1 | 637 | 1 | 623 | 0.0 | 850 |
| MS.gene052329.t1 | MTR_4g076610 | 67.816 | 87 | 28 | 0 | 549 | 635 | 1 | 87 | 3.00e-34 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052329.t1 | AT2G43250 | 46.582 | 629 | 312 | 8 | 5 | 627 | 6 | 616 | 0.0 | 531 |
Find 127 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCTACCTACTTCTTTATT+TGG | 0.169176 | 4.4:-33855598 | MS.gene052329:CDS |
| TAAACTAGGGACTGTGTTTC+AGG | 0.190651 | 4.4:+33855775 | None:intergenic |
| TGTTAGGATGGTGTTGAAAA+AGG | 0.228608 | 4.4:-33855236 | MS.gene052329:CDS |
| TTGCCTTGGGCTACATTTGC+AGG | 0.246779 | 4.4:-33854242 | MS.gene052329:CDS |
| GCAAGGTGCTGCAACTTCTT+TGG | 0.282101 | 4.4:-33855296 | MS.gene052329:CDS |
| AGCGTGTTGGCTTCTTGCCT+TGG | 0.304013 | 4.4:-33854256 | MS.gene052329:CDS |
| GATGATGATGATAATGATTC+TGG | 0.304630 | 4.4:-33855379 | MS.gene052329:CDS |
| TGGCTATAATGGTCATGTTT+TGG | 0.310822 | 4.4:-33855485 | MS.gene052329:CDS |
| GCTCCTGGATTTGCAACTTC+TGG | 0.314815 | 4.4:-33854425 | MS.gene052329:CDS |
| AGGTGTTTCGTTGATAAAAT+TGG | 0.315113 | 4.4:-33855565 | MS.gene052329:CDS |
| GATGAGTATGAGAGGGTTGC+TGG | 0.316031 | 4.4:-33855538 | MS.gene052329:CDS |
| GTCTGTTTCGGAGGCGGGTT+CGG | 0.318325 | 4.4:-33855164 | MS.gene052329:CDS |
| GCAACTTCTTTGGCTTCAAT+TGG | 0.322777 | 4.4:-33855286 | MS.gene052329:CDS |
| CACTGGGATACTCCGCTTCC+TGG | 0.339484 | 4.4:-33854725 | MS.gene052329:CDS |
| TTTCGATGAATAAAGATGTT+AGG | 0.339563 | 4.4:-33855252 | MS.gene052329:CDS |
| CTTCATGAAAACCGATGATT+TGG | 0.341982 | 4.4:+33854400 | None:intergenic |
| GGTGAGCTTAAAGAGGTTCT+TGG | 0.343809 | 4.4:-33854704 | MS.gene052329:CDS |
| AAATCTACGCAAGGCATCTA+AGG | 0.344087 | 4.4:-33854111 | MS.gene052329:CDS |
| TCTGTGGTGGCAGTTGGGGC+TGG | 0.365844 | 4.4:-33854605 | MS.gene052329:CDS |
| TTGAATTCCACGACCCAAAC+TGG | 0.370222 | 4.4:+33854133 | None:intergenic |
| TGACAGCAAGCAGTTGTTTA+CGG | 0.373345 | 4.4:-33854633 | MS.gene052329:CDS |
| CTAGTGTCTTATCAGATATC+AGG | 0.379221 | 4.4:-33854751 | MS.gene052329:CDS |
| GGCAGCATCGCAACTTGCAC+AGG | 0.383363 | 4.4:-33854221 | MS.gene052329:CDS |
| TCATCTAAAGCTACGGCTCC+TGG | 0.394440 | 4.4:-33854440 | MS.gene052329:CDS |
| ATGGTTTGAATTCGTCGAAA+TGG | 0.396953 | 4.4:+33855866 | None:intergenic |
| TCACATATTCTGAAGGTAAC+GGG | 0.398720 | 4.4:-33854673 | MS.gene052329:CDS |
| ATTGAGTACTCAGAGCTTCC+AGG | 0.401163 | 4.4:-33854857 | MS.gene052329:CDS |
| AAACTCCGAACCAACATCTT+TGG | 0.402577 | 4.4:+33855447 | None:intergenic |
| GCGTGTTGGCTTCTTGCCTT+GGG | 0.409038 | 4.4:-33854255 | MS.gene052329:CDS |
| GAAACGCCTTTCTCGCCAAC+AGG | 0.412208 | 4.4:+33854893 | None:intergenic |
| CGGATAGTAGTTTCTGCATC+TGG | 0.414807 | 4.4:+33854474 | None:intergenic |
| ATGCAGCCTGTTGGCGAGAA+AGG | 0.418562 | 4.4:-33854899 | MS.gene052329:CDS |
| ACAAACTGCTTAGTGTGATC+GGG | 0.423948 | 4.4:+33855814 | None:intergenic |
| CGGAACATGATTGTTCTGAT+AGG | 0.424487 | 4.4:+33855734 | None:intergenic |
| CTTTATTTGGTGTTATCAAA+AGG | 0.426684 | 4.4:-33855585 | MS.gene052329:CDS |
| CTGTTATTGTTCAAGCTGAT+TGG | 0.431321 | 4.4:-33855675 | MS.gene052329:CDS |
| AAAGAGTCTGTTTCGGAGGC+GGG | 0.432385 | 4.4:-33855169 | MS.gene052329:CDS |
| GCTTGAACAATAACAGCATC+AGG | 0.435756 | 4.4:+33855682 | None:intergenic |
| ATAGTTCTGTGGTGGCAGTT+GGG | 0.436152 | 4.4:-33854610 | MS.gene052329:CDS |
| AAAGGGTTTATCTGAAAATA+CGG | 0.437356 | 4.4:-33855218 | MS.gene052329:CDS |
| GATAGTTCTGTGGTGGCAGT+TGG | 0.441768 | 4.4:-33854611 | MS.gene052329:CDS |
| GGCTTGATTTACTATGAAGA+TGG | 0.453837 | 4.4:-33854200 | MS.gene052329:CDS |
| GGCTGCCAAAGATGTTGGTT+CGG | 0.456595 | 4.4:-33855452 | MS.gene052329:CDS |
| TATTCACAAAATCTCTAAAA+CGG | 0.463081 | 4.4:+33855335 | None:intergenic |
| TACAAACTGCTTAGTGTGAT+CGG | 0.465388 | 4.4:+33855813 | None:intergenic |
| TCAATTGCCAGTTTGGGTCG+TGG | 0.475526 | 4.4:-33854140 | MS.gene052329:CDS |
| GCTCCAGAAGTTGCAAATCC+AGG | 0.476554 | 4.4:+33854422 | None:intergenic |
| TAAGCCCCTCTACGGCAAAT+CGG | 0.478190 | 4.4:+33854945 | None:intergenic |
| GAGAAGAGAGAATGTAAACT+AGG | 0.479814 | 4.4:+33855761 | None:intergenic |
| TTACTATTACCAATCAAAAG+TGG | 0.483777 | 4.4:+33855193 | None:intergenic |
| AGTACGATCTTGAGAGAAGC+TGG | 0.493091 | 4.4:+33854500 | None:intergenic |
| ACTTTCCGATTTGCCGTAGA+GGG | 0.493522 | 4.4:-33854950 | MS.gene052329:CDS |
| GTAAACAGTATAAGGACAGC+AGG | 0.493787 | 4.4:-33854038 | MS.gene052329:CDS |
| ATTGATGAGTTCACGCGCAT+CGG | 0.501516 | 4.4:+33855714 | None:intergenic |
| TGGCTTCAATTGGTTTGAAG+AGG | 0.502134 | 4.4:-33855276 | MS.gene052329:CDS |
| TATATAGACTGTGCAAATGC+AGG | 0.502372 | 4.4:+33855109 | None:intergenic |
| GTGTAAACTTCACTTGTGCC+TGG | 0.503858 | 4.4:+33854828 | None:intergenic |
| CGACCCAAACTGGCAATTGA+GGG | 0.505588 | 4.4:+33854143 | None:intergenic |
| TAGAATAGCTTTACATGATG+AGG | 0.515895 | 4.4:-33854924 | MS.gene052329:CDS |
| AAAAGAGTCTGTTTCGGAGG+CGG | 0.517124 | 4.4:-33855170 | MS.gene052329:CDS |
| GCCTTTGTCAGCGTCGACAT+GGG | 0.518045 | 4.4:+33854539 | None:intergenic |
| GCTTGATTTACTATGAAGAT+GGG | 0.519449 | 4.4:-33854199 | MS.gene052329:CDS |
| CCTTGGTTCATCTAAAGCTA+CGG | 0.524603 | 4.4:-33854447 | MS.gene052329:CDS |
| TATCCAAGCTACAAAACCTA+TGG | 0.524781 | 4.4:-33855903 | MS.gene052329:CDS |
| ACTTGTGCCTGGACATCACC+TGG | 0.529021 | 4.4:+33854839 | None:intergenic |
| AAACTACTATCCGTTGCCCT+TGG | 0.529028 | 4.4:-33854464 | MS.gene052329:CDS |
| AGCCTTTGTCAGCGTCGACA+TGG | 0.529215 | 4.4:+33854538 | None:intergenic |
| ACGACCCAAACTGGCAATTG+AGG | 0.529521 | 4.4:+33854142 | None:intergenic |
| GTTGCAGCACCTTGCTGCTG+AGG | 0.529964 | 4.4:+33855304 | None:intergenic |
| AGAGCTTCCAGGTGATGTCC+AGG | 0.533423 | 4.4:-33854846 | MS.gene052329:CDS |
| TATCAGATATCAGGAAACAC+TGG | 0.536180 | 4.4:-33854742 | MS.gene052329:CDS |
| TAGTTCTGTGGTGGCAGTTG+GGG | 0.537530 | 4.4:-33854609 | MS.gene052329:CDS |
| GTACTCAATCTTATTCGACT+TGG | 0.537533 | 4.4:+33854871 | None:intergenic |
| TGGTAGAGATGAGTATGAGA+GGG | 0.538249 | 4.4:-33855545 | MS.gene052329:CDS |
| AGAATAGCTTTACATGATGA+GGG | 0.540286 | 4.4:-33854923 | MS.gene052329:CDS |
| AGAACCTCTTTAAGCTCACC+AGG | 0.545322 | 4.4:+33854707 | None:intergenic |
| ATAACACCAAATAAAGAAGT+AGG | 0.545666 | 4.4:+33855592 | None:intergenic |
| AGAAGAGAGAATGTAAACTA+GGG | 0.546637 | 4.4:+33855762 | None:intergenic |
| ATGTTGTTGGATGTGAATAG+AGG | 0.547789 | 4.4:-33855010 | MS.gene052329:CDS |
| GGCTATGGCAACCTGAGTAA+TGG | 0.549586 | 4.4:+33854349 | None:intergenic |
| CGTCGACATGGGGACTACCT+TGG | 0.551635 | 4.4:+33854550 | None:intergenic |
| GCTTCCTGGTGAGCTTAAAG+AGG | 0.551773 | 4.4:-33854711 | MS.gene052329:CDS |
| GATGAATAAAGATGTTAGGA+TGG | 0.552168 | 4.4:-33855248 | MS.gene052329:CDS |
| ACATGCACAGAAGATGTTGT+TGG | 0.554385 | 4.4:-33855023 | MS.gene052329:CDS |
| AACTTCTGGAGCCAAATCAT+CGG | 0.562407 | 4.4:-33854411 | MS.gene052329:CDS |
| AACGGGGCTAGTTTAAATCA+TGG | 0.563180 | 4.4:-33854656 | MS.gene052329:CDS |
| TCTTTAAGCTCACCAGGAAG+CGG | 0.563491 | 4.4:+33854713 | None:intergenic |
| AGCTATTCTAAGCCCCTCTA+CGG | 0.563581 | 4.4:+33854937 | None:intergenic |
| ATCACATATTCTGAAGGTAA+CGG | 0.567859 | 4.4:-33854674 | MS.gene052329:CDS |
| GGAGCATCATAACTAGCTGT+TGG | 0.568658 | 4.4:+33855130 | None:intergenic |
| TTGGTAGAGATGAGTATGAG+AGG | 0.570361 | 4.4:-33855546 | MS.gene052329:CDS |
| AGGAGCTTCGTCTCTGACCA+AGG | 0.573466 | 4.4:-33854567 | MS.gene052329:CDS |
| AGGCGAAAGATTCAGCGTGT+TGG | 0.574368 | 4.4:-33854269 | MS.gene052329:CDS |
| TACTTTCCGATTTGCCGTAG+AGG | 0.576011 | 4.4:-33854951 | MS.gene052329:CDS |
| TCGAAATGGAGTGTAGAGAA+TGG | 0.577639 | 4.4:+33855880 | None:intergenic |
| GACCCAAACTGGCAATTGAG+GGG | 0.581848 | 4.4:+33854144 | None:intergenic |
| CCCCATGTCGACGCTGACAA+AGG | 0.592575 | 4.4:-33854540 | MS.gene052329:CDS |
| TTTAGATGAACCAAGGGCAA+CGG | 0.597102 | 4.4:+33854454 | None:intergenic |
| GTTGTTTACGGATAGTTCTG+TGG | 0.604428 | 4.4:-33854621 | MS.gene052329:CDS |
| CTTATCAGTCTGGCTACGAA+TGG | 0.609370 | 4.4:+33854802 | None:intergenic |
| CTGCCTGCAAATGTAGCCCA+AGG | 0.610402 | 4.4:+33854239 | None:intergenic |
| TGATGTTAAGACTGTCTCTG+AGG | 0.611028 | 4.4:-33854978 | MS.gene052329:CDS |
| TAAACAGTATAAGGACAGCA+GGG | 0.613425 | 4.4:-33854037 | MS.gene052329:CDS |
| AGCATCAACTACTGCCACAA+TGG | 0.614592 | 4.4:+33854772 | None:intergenic |
| GCTAACGCATTACCCATCAA+TGG | 0.615405 | 4.4:+33855046 | None:intergenic |
| AAGGCAGTAATGCAAACAGA+AGG | 0.621943 | 4.4:-33854092 | MS.gene052329:CDS |
| AAAGATTAGAGCCATTACTC+AGG | 0.624579 | 4.4:-33854360 | MS.gene052329:CDS |
| CACATATTCTGAAGGTAACG+GGG | 0.625070 | 4.4:-33854672 | MS.gene052329:CDS |
| CTTTCCGATTTGCCGTAGAG+GGG | 0.626574 | 4.4:-33854949 | MS.gene052329:CDS |
| TGGAATTCAAAATCTACGCA+AGG | 0.628926 | 4.4:-33854120 | MS.gene052329:CDS |
| ATCAGATATCAGGAAACACT+GGG | 0.629051 | 4.4:-33854741 | MS.gene052329:CDS |
| ACCCAAACTGGCAATTGAGG+GGG | 0.631842 | 4.4:+33854145 | None:intergenic |
| CCTTTGTCAGCGTCGACATG+GGG | 0.632576 | 4.4:+33854540 | None:intergenic |
| GAATTAATCACATATTCTGA+AGG | 0.634590 | 4.4:-33854680 | MS.gene052329:CDS |
| GAATAGCTTTACATGATGAG+GGG | 0.637430 | 4.4:-33854922 | MS.gene052329:CDS |
| TGATAAGTTTAAAACCATTG+TGG | 0.638774 | 4.4:-33854786 | MS.gene052329:CDS |
| GTTTACGGATAGTTCTGTGG+TGG | 0.643321 | 4.4:-33854618 | MS.gene052329:CDS |
| CCGTAGCTTTAGATGAACCA+AGG | 0.650188 | 4.4:+33854447 | None:intergenic |
| CAAACTGCTTAGTGTGATCG+GGG | 0.657065 | 4.4:+33855815 | None:intergenic |
| CGTAGCTTTAGATGAACCAA+GGG | 0.659199 | 4.4:+33854448 | None:intergenic |
| GATGAGGGGATGCAGCCTGT+TGG | 0.663325 | 4.4:-33854908 | MS.gene052329:CDS |
| GTTGGATGTGAATAGAGGAG+AGG | 0.665248 | 4.4:-33855005 | MS.gene052329:CDS |
| CAGCATTCTATGACATAATG+CGG | 0.668940 | 4.4:-33854292 | MS.gene052329:CDS |
| GGAGTGTAGAGAATGGCCAT+AGG | 0.668959 | 4.4:+33855887 | None:intergenic |
| GGCACAAGTGAAGTTTACAC+AGG | 0.677075 | 4.4:-33854825 | MS.gene052329:CDS |
| CATTCTATGACATAATGCGG+AGG | 0.705567 | 4.4:-33854289 | MS.gene052329:CDS |
| AAACAGTATAAGGACAGCAG+GGG | 0.706177 | 4.4:-33854036 | MS.gene052329:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCTTTTGTAAACAGTATA+AGG | - | chr4.4:33855901-33855920 | MS.gene052329:CDS | 20.0% |
| !!! | CAAAAGATTCTATTGATTTT+TGG | + | chr4.4:33855890-33855909 | None:intergenic | 20.0% |
| !!! | TATTCACAAAATCTCTAAAA+CGG | + | chr4.4:33854615-33854634 | None:intergenic | 20.0% |
| ! | AAAGGGTTTATCTGAAAATA+CGG | - | chr4.4:33854729-33854748 | MS.gene052329:CDS | 25.0% |
| ! | ATAACACCAAATAAAGAAGT+AGG | + | chr4.4:33854358-33854377 | None:intergenic | 25.0% |
| ! | GAATTAATCACATATTCTGA+AGG | - | chr4.4:33855267-33855286 | MS.gene052329:CDS | 25.0% |
| ! | TAGTAAAAAAGAGTCTGTTT+CGG | - | chr4.4:33854771-33854790 | MS.gene052329:CDS | 25.0% |
| ! | TTACTATTACCAATCAAAAG+TGG | + | chr4.4:33854757-33854776 | None:intergenic | 25.0% |
| ! | TTTCGATGAATAAAGATGTT+AGG | - | chr4.4:33854695-33854714 | MS.gene052329:CDS | 25.0% |
| !! | ATTTTCGTATTTACCATTGA+TGG | - | chr4.4:33854888-33854907 | MS.gene052329:CDS | 25.0% |
| !! | TGATAAGTTTAAAACCATTG+TGG | - | chr4.4:33855161-33855180 | MS.gene052329:CDS | 25.0% |
| !! | TTTTCGTATTTACCATTGAT+GGG | - | chr4.4:33854889-33854908 | MS.gene052329:CDS | 25.0% |
| !!! | CTTTATTTGGTGTTATCAAA+AGG | - | chr4.4:33854362-33854381 | MS.gene052329:CDS | 25.0% |
| !!! | TTGTTTACTAGTTGTTTTGA+TGG | + | chr4.4:33854103-33854122 | None:intergenic | 25.0% |
| AGAAGAGAGAATGTAAACTA+GGG | + | chr4.4:33854188-33854207 | None:intergenic | 30.0% | |
| GATGAATAAAGATGTTAGGA+TGG | - | chr4.4:33854699-33854718 | MS.gene052329:CDS | 30.0% | |
| GCTTGATTTACTATGAAGAT+GGG | - | chr4.4:33855748-33855767 | MS.gene052329:CDS | 30.0% | |
| ! | AGAATAGCTTTACATGATGA+GGG | - | chr4.4:33855024-33855043 | MS.gene052329:CDS | 30.0% |
| ! | AGGTGTTTCGTTGATAAAAT+TGG | - | chr4.4:33854382-33854401 | MS.gene052329:CDS | 30.0% |
| ! | ATCACATATTCTGAAGGTAA+CGG | - | chr4.4:33855273-33855292 | MS.gene052329:CDS | 30.0% |
| ! | GATGATGATGATAATGATTC+TGG | - | chr4.4:33854568-33854587 | MS.gene052329:CDS | 30.0% |
| ! | TAGAATAGCTTTACATGATG+AGG | - | chr4.4:33855023-33855042 | MS.gene052329:CDS | 30.0% |
| ! | TTTGTTCTTAGGGAGATTTT+TGG | - | chr4.4:33854436-33854455 | MS.gene052329:CDS | 30.0% |
| !! | TGCTGGTTATTTTGTTCTTA+GGG | - | chr4.4:33854426-33854445 | MS.gene052329:CDS | 30.0% |
| !! | TTGCTGGTTATTTTGTTCTT+AGG | - | chr4.4:33854425-33854444 | MS.gene052329:CDS | 30.0% |
| !!! | AAAACTAGTTTTTTCAGCAG+AGG | + | chr4.4:33855622-33855641 | None:intergenic | 30.0% |
| !!! | AAACTAGTTTTTCAACTCTG+AGG | - | chr4.4:33855631-33855650 | MS.gene052329:CDS | 30.0% |
| !!! | ATTTTTGGTACTGGCTATAA+TGG | - | chr4.4:33854451-33854470 | MS.gene052329:CDS | 30.0% |
| !!! | TGGTTTTAAACTTATCAGTC+TGG | + | chr4.4:33855158-33855177 | None:intergenic | 30.0% |
| !!! | TTCTATTGATTTTTGGACTC+TGG | + | chr4.4:33855883-33855902 | None:intergenic | 30.0% |
| AAAGATTAGAGCCATTACTC+AGG | - | chr4.4:33855587-33855606 | MS.gene052329:CDS | 35.0% | |
| ATCAGATATCAGGAAACACT+GGG | - | chr4.4:33855206-33855225 | MS.gene052329:CDS | 35.0% | |
| ATGGTTTGAATTCGTCGAAA+TGG | + | chr4.4:33854084-33854103 | None:intergenic | 35.0% | |
| ATGTTGTTGGATGTGAATAG+AGG | - | chr4.4:33854937-33854956 | MS.gene052329:CDS | 35.0% | |
| CAGCATTCTATGACATAATG+CGG | - | chr4.4:33855655-33855674 | MS.gene052329:CDS | 35.0% | |
| CTAGTGTCTTATCAGATATC+AGG | - | chr4.4:33855196-33855215 | MS.gene052329:CDS | 35.0% | |
| CTATCGTCAGAAAAAGTTTC+TGG | + | chr4.4:33854544-33854563 | None:intergenic | 35.0% | |
| CTGTTATTGTTCAAGCTGAT+TGG | - | chr4.4:33854272-33854291 | MS.gene052329:CDS | 35.0% | |
| CTTCATGAAAACCGATGATT+TGG | + | chr4.4:33855550-33855569 | None:intergenic | 35.0% | |
| GAGAAGAGAGAATGTAAACT+AGG | + | chr4.4:33854189-33854208 | None:intergenic | 35.0% | |
| GAGCTACCTACTTCTTTATT+TGG | - | chr4.4:33854349-33854368 | MS.gene052329:CDS | 35.0% | |
| GGCTTGATTTACTATGAAGA+TGG | - | chr4.4:33855747-33855766 | MS.gene052329:CDS | 35.0% | |
| GTACTCAATCTTATTCGACT+TGG | + | chr4.4:33855079-33855098 | None:intergenic | 35.0% | |
| TAAAAAAGAGTCTGTTTCGG+AGG | - | chr4.4:33854774-33854793 | MS.gene052329:CDS | 35.0% | |
| TAAACAGTATAAGGACAGCA+GGG | - | chr4.4:33855910-33855929 | MS.gene052329:CDS | 35.0% | |
| TACAAACTGCTTAGTGTGAT+CGG | + | chr4.4:33854137-33854156 | None:intergenic | 35.0% | |
| TATATAGACTGTGCAAATGC+AGG | + | chr4.4:33854841-33854860 | None:intergenic | 35.0% | |
| TATCAGATATCAGGAAACAC+TGG | - | chr4.4:33855205-33855224 | MS.gene052329:CDS | 35.0% | |
| TATCCAAGCTACAAAACCTA+TGG | - | chr4.4:33854044-33854063 | MS.gene052329:CDS | 35.0% | |
| TGGAATTCAAAATCTACGCA+AGG | - | chr4.4:33855827-33855846 | MS.gene052329:CDS | 35.0% | |
| ! | GAATAGCTTTACATGATGAG+GGG | - | chr4.4:33855025-33855044 | MS.gene052329:CDS | 35.0% |
| ! | GTTAGGATGGTGTTGAAAAA+GGG | - | chr4.4:33854712-33854731 | MS.gene052329:CDS | 35.0% |
| ! | TCACATATTCTGAAGGTAAC+GGG | - | chr4.4:33855274-33855293 | MS.gene052329:CDS | 35.0% |
| ! | TGATGATGATGATGATGAAG+AGG | - | chr4.4:33854318-33854337 | MS.gene052329:CDS | 35.0% |
| ! | TGGCTATAATGGTCATGTTT+TGG | - | chr4.4:33854462-33854481 | MS.gene052329:CDS | 35.0% |
| ! | TGTTAGGATGGTGTTGAAAA+AGG | - | chr4.4:33854711-33854730 | MS.gene052329:CDS | 35.0% |
| !! | AATACGGATCCACTTTTGAT+TGG | - | chr4.4:33854745-33854764 | MS.gene052329:CDS | 35.0% |
| !!! | TCATGTTTTGGCTGCTAAAA+AGG | - | chr4.4:33854474-33854493 | MS.gene052329:CDS | 35.0% |
| AAAAAGGCTGCCAAAGATGT+TGG | - | chr4.4:33854490-33854509 | MS.gene052329:CDS | 40.0% | |
| AAACAGTATAAGGACAGCAG+GGG | - | chr4.4:33855911-33855930 | MS.gene052329:CDS | 40.0% | |
| AAACTCCGAACCAACATCTT+TGG | + | chr4.4:33854503-33854522 | None:intergenic | 40.0% | |
| AAGGCAGTAATGCAAACAGA+AGG | - | chr4.4:33855855-33855874 | MS.gene052329:CDS | 40.0% | |
| ACAAACTGCTTAGTGTGATC+GGG | + | chr4.4:33854136-33854155 | None:intergenic | 40.0% | |
| ACATGCACAGAAGATGTTGT+TGG | - | chr4.4:33854924-33854943 | MS.gene052329:CDS | 40.0% | |
| CATTCTATGACATAATGCGG+AGG | - | chr4.4:33855658-33855677 | MS.gene052329:CDS | 40.0% | |
| CGGAACATGATTGTTCTGAT+AGG | + | chr4.4:33854216-33854235 | None:intergenic | 40.0% | |
| GCTTGAACAATAACAGCATC+AGG | + | chr4.4:33854268-33854287 | None:intergenic | 40.0% | |
| GTAAACAGTATAAGGACAGC+AGG | - | chr4.4:33855909-33855928 | MS.gene052329:CDS | 40.0% | |
| TAAACTAGGGACTGTGTTTC+AGG | + | chr4.4:33854175-33854194 | None:intergenic | 40.0% | |
| TCGAAATGGAGTGTAGAGAA+TGG | + | chr4.4:33854070-33854089 | None:intergenic | 40.0% | |
| TGACAGCAAGCAGTTGTTTA+CGG | - | chr4.4:33855314-33855333 | MS.gene052329:CDS | 40.0% | |
| TGATGTTAAGACTGTCTCTG+AGG | - | chr4.4:33854969-33854988 | MS.gene052329:CDS | 40.0% | |
| TGGTAGAGATGAGTATGAGA+GGG | - | chr4.4:33854402-33854421 | MS.gene052329:CDS | 40.0% | |
| TTGGTAGAGATGAGTATGAG+AGG | - | chr4.4:33854401-33854420 | MS.gene052329:CDS | 40.0% | |
| TTTAGATGAACCAAGGGCAA+CGG | + | chr4.4:33855496-33855515 | None:intergenic | 40.0% | |
| ! | AAATCTACGCAAGGCATCTA+AGG | - | chr4.4:33855836-33855855 | MS.gene052329:CDS | 40.0% |
| ! | CACATATTCTGAAGGTAACG+GGG | - | chr4.4:33855275-33855294 | MS.gene052329:CDS | 40.0% |
| ! | CCTTGGTTCATCTAAAGCTA+CGG | - | chr4.4:33855500-33855519 | MS.gene052329:CDS | 40.0% |
| ! | GCAACTTCTTTGGCTTCAAT+TGG | - | chr4.4:33854661-33854680 | MS.gene052329:CDS | 40.0% |
| ! | GTTGTTTACGGATAGTTCTG+TGG | - | chr4.4:33855326-33855345 | MS.gene052329:CDS | 40.0% |
| ! | TCGTCAGAAAAAGTTTCTGG+AGG | + | chr4.4:33854541-33854560 | None:intergenic | 40.0% |
| !! | AACGGGGCTAGTTTAAATCA+TGG | - | chr4.4:33855291-33855310 | MS.gene052329:CDS | 40.0% |
| !! | AACTTCTGGAGCCAAATCAT+CGG | - | chr4.4:33855536-33855555 | MS.gene052329:CDS | 40.0% |
| !! | CGTAGCTTTAGATGAACCAA+GGG | + | chr4.4:33855502-33855521 | None:intergenic | 40.0% |
| !! | TGGCTTCAATTGGTTTGAAG+AGG | - | chr4.4:33854671-33854690 | MS.gene052329:CDS | 40.0% |
| !!! | AGTTTTTTCAGCAGAGGCTA+TGG | + | chr4.4:33855616-33855635 | None:intergenic | 40.0% |
| !!! | CTTAGGGAGATTTTTGGTAC+TGG | - | chr4.4:33854442-33854461 | MS.gene052329:CDS | 40.0% |
| AAAAGAGTCTGTTTCGGAGG+CGG | - | chr4.4:33854777-33854796 | MS.gene052329:CDS | 45.0% | |
| AAACTACTATCCGTTGCCCT+TGG | - | chr4.4:33855483-33855502 | MS.gene052329:CDS | 45.0% | |
| AGAACCTCTTTAAGCTCACC+AGG | + | chr4.4:33855243-33855262 | None:intergenic | 45.0% | |
| AGCATCAACTACTGCCACAA+TGG | + | chr4.4:33855178-33855197 | None:intergenic | 45.0% | |
| AGCTATTCTAAGCCCCTCTA+CGG | + | chr4.4:33855013-33855032 | None:intergenic | 45.0% | |
| AGTACGATCTTGAGAGAAGC+TGG | + | chr4.4:33855450-33855469 | None:intergenic | 45.0% | |
| ATTGAGTACTCAGAGCTTCC+AGG | - | chr4.4:33855090-33855109 | MS.gene052329:CDS | 45.0% | |
| ATTGATGAGTTCACGCGCAT+CGG | + | chr4.4:33854236-33854255 | None:intergenic | 45.0% | |
| CAAACTGCTTAGTGTGATCG+GGG | + | chr4.4:33854135-33854154 | None:intergenic | 45.0% | |
| CGGATAGTAGTTTCTGCATC+TGG | + | chr4.4:33855476-33855495 | None:intergenic | 45.0% | |
| CTTATCAGTCTGGCTACGAA+TGG | + | chr4.4:33855148-33855167 | None:intergenic | 45.0% | |
| GCTAACGCATTACCCATCAA+TGG | + | chr4.4:33854904-33854923 | None:intergenic | 45.0% | |
| GGCACAAGTGAAGTTTACAC+AGG | - | chr4.4:33855122-33855141 | MS.gene052329:CDS | 45.0% | |
| GGTGAGCTTAAAGAGGTTCT+TGG | - | chr4.4:33855243-33855262 | MS.gene052329:CDS | 45.0% | |
| GTGTAAACTTCACTTGTGCC+TGG | + | chr4.4:33855122-33855141 | None:intergenic | 45.0% | |
| GTTGGATGTGAATAGAGGAG+AGG | - | chr4.4:33854942-33854961 | MS.gene052329:CDS | 45.0% | |
| TCTTTAAGCTCACCAGGAAG+CGG | + | chr4.4:33855237-33855256 | None:intergenic | 45.0% | |
| TTGAATTCCACGACCCAAAC+TGG | + | chr4.4:33855817-33855836 | None:intergenic | 45.0% | |
| ! | ACTTTCCGATTTGCCGTAGA+GGG | - | chr4.4:33854997-33855016 | MS.gene052329:CDS | 45.0% |
| ! | ATAGTTCTGTGGTGGCAGTT+GGG | - | chr4.4:33855337-33855356 | MS.gene052329:CDS | 45.0% |
| ! | GGAGCATCATAACTAGCTGT+TGG | + | chr4.4:33854820-33854839 | None:intergenic | 45.0% |
| ! | GTTTACGGATAGTTCTGTGG+TGG | - | chr4.4:33855329-33855348 | MS.gene052329:CDS | 45.0% |
| ! | TACTTTCCGATTTGCCGTAG+AGG | - | chr4.4:33854996-33855015 | MS.gene052329:CDS | 45.0% |
| !! | CCGTAGCTTTAGATGAACCA+AGG | + | chr4.4:33855503-33855522 | None:intergenic | 45.0% |
| !! | TGGCCATAGGTTTTGTAGCT+TGG | + | chr4.4:33854050-33854069 | None:intergenic | 45.0% |
| !!! | AGTTTTGTTCCTCAGCAGCA+AGG | - | chr4.4:33854634-33854653 | MS.gene052329:CDS | 45.0% |
| AAAGAGTCTGTTTCGGAGGC+GGG | - | chr4.4:33854778-33854797 | MS.gene052329:CDS | 50.0% | |
| ACCCAAACTGGCAATTGAGG+GGG | + | chr4.4:33855805-33855824 | None:intergenic | 50.0% | |
| ACGACCCAAACTGGCAATTG+AGG | + | chr4.4:33855808-33855827 | None:intergenic | 50.0% | |
| AGGCGAAAGATTCAGCGTGT+TGG | - | chr4.4:33855678-33855697 | MS.gene052329:CDS | 50.0% | |
| CGACCCAAACTGGCAATTGA+GGG | + | chr4.4:33855807-33855826 | None:intergenic | 50.0% | |
| GACCCAAACTGGCAATTGAG+GGG | + | chr4.4:33855806-33855825 | None:intergenic | 50.0% | |
| GATGAGTATGAGAGGGTTGC+TGG | - | chr4.4:33854409-33854428 | MS.gene052329:CDS | 50.0% | |
| GCTCCAGAAGTTGCAAATCC+AGG | + | chr4.4:33855528-33855547 | None:intergenic | 50.0% | |
| GCTCCTGGATTTGCAACTTC+TGG | - | chr4.4:33855522-33855541 | MS.gene052329:CDS | 50.0% | |
| GCTTCCTGGTGAGCTTAAAG+AGG | - | chr4.4:33855236-33855255 | MS.gene052329:CDS | 50.0% | |
| GGAGTGTAGAGAATGGCCAT+AGG | + | chr4.4:33854063-33854082 | None:intergenic | 50.0% | |
| GGCTATGGCAACCTGAGTAA+TGG | + | chr4.4:33855601-33855620 | None:intergenic | 50.0% | |
| TAAGCCCCTCTACGGCAAAT+CGG | + | chr4.4:33855005-33855024 | None:intergenic | 50.0% | |
| TCAATTGCCAGTTTGGGTCG+TGG | - | chr4.4:33855807-33855826 | MS.gene052329:CDS | 50.0% | |
| TTGCCTTGGGCTACATTTGC+AGG | - | chr4.4:33855705-33855724 | MS.gene052329:CDS | 50.0% | |
| ! | CTTTCCGATTTGCCGTAGAG+GGG | - | chr4.4:33854998-33855017 | MS.gene052329:CDS | 50.0% |
| ! | GATAGTTCTGTGGTGGCAGT+TGG | - | chr4.4:33855336-33855355 | MS.gene052329:CDS | 50.0% |
| ! | GCTGGAGCAACAGCAGTTTT+AGG | - | chr4.4:33855360-33855379 | MS.gene052329:CDS | 50.0% |
| ! | GGCTGCCAAAGATGTTGGTT+CGG | - | chr4.4:33854495-33854514 | MS.gene052329:CDS | 50.0% |
| ! | TAGTTCTGTGGTGGCAGTTG+GGG | - | chr4.4:33855338-33855357 | MS.gene052329:CDS | 50.0% |
| ! | TCATCTAAAGCTACGGCTCC+TGG | - | chr4.4:33855507-33855526 | MS.gene052329:CDS | 50.0% |
| !! | GCAAGGTGCTGCAACTTCTT+TGG | - | chr4.4:33854651-33854670 | MS.gene052329:CDS | 50.0% |
| ACTTGTGCCTGGACATCACC+TGG | + | chr4.4:33855111-33855130 | None:intergenic | 55.0% | |
| AGAGCTTCCAGGTGATGTCC+AGG | - | chr4.4:33855101-33855120 | MS.gene052329:CDS | 55.0% | |
| AGGAGCTTCGTCTCTGACCA+AGG | - | chr4.4:33855380-33855399 | MS.gene052329:CDS | 55.0% | |
| ATGCAGCCTGTTGGCGAGAA+AGG | - | chr4.4:33855048-33855067 | MS.gene052329:CDS | 55.0% | |
| CTGCCTGCAAATGTAGCCCA+AGG | + | chr4.4:33855711-33855730 | None:intergenic | 55.0% | |
| GAAACGCCTTTCTCGCCAAC+AGG | + | chr4.4:33855057-33855076 | None:intergenic | 55.0% | |
| GCCCCCTCAATTGCCAGTTT+GGG | - | chr4.4:33855801-33855820 | MS.gene052329:CDS | 55.0% | |
| !! | AGCCTTTGTCAGCGTCGACA+TGG | + | chr4.4:33855412-33855431 | None:intergenic | 55.0% |
| !! | AGCGTGTTGGCTTCTTGCCT+TGG | - | chr4.4:33855691-33855710 | MS.gene052329:CDS | 55.0% |
| !! | CCTTTGTCAGCGTCGACATG+GGG | + | chr4.4:33855410-33855429 | None:intergenic | 55.0% |
| !! | GCCTTTGTCAGCGTCGACAT+GGG | + | chr4.4:33855411-33855430 | None:intergenic | 55.0% |
| !! | GCGTGTTGGCTTCTTGCCTT+GGG | - | chr4.4:33855692-33855711 | MS.gene052329:CDS | 55.0% |
| CACTGGGATACTCCGCTTCC+TGG | - | chr4.4:33855222-33855241 | MS.gene052329:CDS | 60.0% | |
| CCCCATGTCGACGCTGACAA+AGG | - | chr4.4:33855407-33855426 | MS.gene052329:CDS | 60.0% | |
| CGCCCCCTCAATTGCCAGTT+TGG | - | chr4.4:33855800-33855819 | MS.gene052329:CDS | 60.0% | |
| CGTCGACATGGGGACTACCT+TGG | + | chr4.4:33855400-33855419 | None:intergenic | 60.0% | |
| GATGAGGGGATGCAGCCTGT+TGG | - | chr4.4:33855039-33855058 | MS.gene052329:CDS | 60.0% | |
| GGCAGCATCGCAACTTGCAC+AGG | - | chr4.4:33855726-33855745 | MS.gene052329:CDS | 60.0% | |
| GTTGCAGCACCTTGCTGCTG+AGG | + | chr4.4:33854646-33854665 | None:intergenic | 60.0% | |
| TGGCAATTGAGGGGGCGACA+GGG | + | chr4.4:33855797-33855816 | None:intergenic | 60.0% | |
| ! | GTCTGTTTCGGAGGCGGGTT+CGG | - | chr4.4:33854783-33854802 | MS.gene052329:CDS | 60.0% |
| CTGGCAATTGAGGGGGCGAC+AGG | + | chr4.4:33855798-33855817 | None:intergenic | 65.0% | |
| TCTGTGGTGGCAGTTGGGGC+TGG | - | chr4.4:33855342-33855361 | MS.gene052329:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 33854028 | 33855941 | 33854028 | ID=MS.gene052329 |
| chr4.4 | mRNA | 33854028 | 33855941 | 33854028 | ID=MS.gene052329.t1;Parent=MS.gene052329 |
| chr4.4 | exon | 33854028 | 33855941 | 33854028 | ID=MS.gene052329.t1.exon1;Parent=MS.gene052329.t1 |
| chr4.4 | CDS | 33854028 | 33855941 | 33854028 | ID=cds.MS.gene052329.t1;Parent=MS.gene052329.t1 |
| Gene Sequence |
| Protein sequence |
