AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79519


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79519.t1 MTR_4g011720 88.889 315 33 2 1 314 1 314 0.0 578
MS.gene79519.t1 MTR_4g011690 81.905 315 56 1 1 314 1 315 0.0 538
MS.gene79519.t1 MTR_4g011720 88.889 234 25 1 1 234 1 233 4.78e-152 427
MS.gene79519.t1 MTR_7g090520 39.564 321 182 8 1 314 1 316 2.32e-79 244
MS.gene79519.t1 MTR_1g011600 38.305 295 166 8 1 283 1 291 4.45e-65 207
MS.gene79519.t1 MTR_3g108520 37.459 307 180 8 1 299 1 303 7.74e-65 207
MS.gene79519.t1 MTR_4g021380 35.235 298 182 7 8 296 6 301 1.54e-58 191
MS.gene79519.t1 MTR_4g021360 35.099 302 186 7 1 296 1 298 7.49e-58 189
MS.gene79519.t1 MTR_6g035160 50.735 136 64 3 164 297 29 163 1.85e-41 142
MS.gene79519.t1 MTR_8g030880 30.094 319 203 8 7 314 8 317 3.55e-37 135
MS.gene79519.t1 MTR_7g077670 29.588 267 182 3 35 296 30 295 5.80e-32 121
MS.gene79519.t1 MTR_5g025050 29.221 308 187 9 9 301 5 296 2.24e-30 117
MS.gene79519.t1 MTR_5g025090 28.374 289 191 7 9 295 5 279 1.41e-29 114
MS.gene79519.t1 MTR_5g027230 29.492 295 189 9 1 293 1 278 3.33e-29 114
MS.gene79519.t1 MTR_1g070120 26.246 301 205 6 9 302 38 328 7.09e-29 113
MS.gene79519.t1 MTR_5g024940 30.508 295 167 10 1 293 1 259 7.13e-29 112
MS.gene79519.t1 MTR_1g070135 27.243 301 192 6 9 297 38 323 4.46e-28 111
MS.gene79519.t1 MTR_8g024120 27.796 313 189 8 5 300 38 330 4.72e-28 111
MS.gene79519.t1 MTR_4g074130 28.669 293 187 10 7 293 38 314 7.37e-27 108
MS.gene79519.t1 MTR_7g102820 28.221 326 181 10 7 301 65 368 2.84e-26 107
MS.gene79519.t1 MTR_8g074050 27.950 322 208 12 1 311 44 352 1.10e-25 105
MS.gene79519.t1 MTR_0009s0050 29.167 312 208 9 2 308 40 343 1.62e-25 104
MS.gene79519.t1 MTR_0009s0050 29.167 312 208 9 2 308 40 343 1.91e-25 104
MS.gene79519.t1 MTR_3g092890 27.597 308 188 7 9 301 38 325 2.25e-25 103
MS.gene79519.t1 MTR_5g005570 28.328 293 184 11 8 293 36 309 3.14e-25 103
MS.gene79519.t1 MTR_1g070085 27.243 301 200 7 9 300 37 327 4.37e-25 103
MS.gene79519.t1 MTR_1g070085 27.243 301 200 7 9 300 37 327 4.37e-25 103
MS.gene79519.t1 MTR_5g059130 27.333 300 192 9 7 294 42 327 7.41e-25 102
MS.gene79519.t1 MTR_1g011580 27.444 266 177 6 9 270 63 316 2.25e-24 101
MS.gene79519.t1 MTR_5g048570 29.316 307 204 9 3 304 39 337 3.75e-24 100
MS.gene79519.t1 MTR_4g116010 28.155 309 200 10 3 302 44 339 3.93e-24 100
MS.gene79519.t1 MTR_7g451860 28.859 298 179 10 8 293 40 316 5.73e-24 100
MS.gene79519.t1 MTR_7g047670 28.859 298 179 10 8 293 40 316 5.73e-24 100
MS.gene79519.t1 MTR_5g032870 26.733 303 209 8 9 303 38 335 7.21e-24 100
MS.gene79519.t1 MTR_1g070100 28.426 197 138 3 116 311 61 255 1.92e-23 97.4
MS.gene79519.t1 MTR_7g062580 29.043 303 194 11 8 301 54 344 2.25e-23 99.0
MS.gene79519.t1 MTR_0009s0050 32.821 195 127 4 116 308 53 245 2.49e-23 97.1
MS.gene79519.t1 MTR_7g068650 27.900 319 204 10 7 310 52 359 2.98e-23 98.6
MS.gene79519.t1 MTR_4g015790 26.625 323 203 10 7 310 60 367 3.47e-23 98.6
MS.gene79519.t1 MTR_7g062570 28.205 312 191 12 8 304 54 347 3.56e-23 98.6
MS.gene79519.t1 MTR_0009s0050 32.821 195 127 4 116 308 53 245 3.72e-23 96.7
MS.gene79519.t1 MTR_5g032880 26.733 303 209 8 9 303 376 673 3.88e-23 100
MS.gene79519.t1 MTR_5g032880 27.181 298 198 8 9 299 38 323 3.79e-22 97.4
MS.gene79519.t1 MTR_4g087090 27.273 297 203 6 9 293 30 325 5.42e-23 97.8
MS.gene79519.t1 MTR_8g033380 31.217 189 127 3 124 311 176 362 6.35e-23 97.8
MS.gene79519.t1 MTR_1g070085 29.947 187 127 4 116 300 65 249 7.92e-23 95.9
MS.gene79519.t1 MTR_1g070080 26.246 301 205 6 9 302 38 328 1.29e-22 96.7
MS.gene79519.t1 MTR_5g055680 28.479 309 206 10 2 304 40 339 1.57e-22 96.7
MS.gene79519.t1 MTR_3g063180 24.299 321 223 9 1 308 34 347 1.63e-22 96.7
MS.gene79519.t1 MTR_8g074070 28.750 320 208 15 1 311 44 352 1.95e-22 96.3
MS.gene79519.t1 MTR_3g070860 25.466 322 207 10 7 310 48 354 2.87e-22 95.9
MS.gene79519.t1 MTR_2g437380 27.044 318 198 8 9 308 50 351 4.50e-22 95.5
MS.gene79519.t1 MTR_5g025060 27.389 314 180 11 1 310 1 270 5.11e-22 94.0
MS.gene79519.t1 MTR_8g093930 26.403 303 202 11 7 296 45 339 5.94e-22 95.1
MS.gene79519.t1 MTR_7g081710 27.157 313 204 9 9 310 49 348 6.19e-22 94.7
MS.gene79519.t1 MTR_5g055900 27.362 307 212 7 2 304 40 339 8.80e-22 94.4
MS.gene79519.t1 MTR_3g096500 26.168 321 202 11 7 305 64 371 9.04e-22 94.7
MS.gene79519.t1 MTR_1g034140 25.402 311 193 10 6 293 24 318 9.35e-22 94.4
MS.gene79519.t1 MTR_6g015950 27.174 276 190 7 32 300 55 326 1.31e-21 93.6
MS.gene79519.t1 MTR_0009s0050 35.583 163 101 4 148 308 3 163 1.38e-21 90.1
MS.gene79519.t1 MTR_2g102570 25.723 311 188 8 9 297 52 341 1.55e-21 94.0
MS.gene79519.t1 MTR_1g081840 25.828 302 207 9 7 296 51 347 2.06e-21 93.6
MS.gene79519.t1 MTR_6g464620 30.688 189 128 3 124 311 187 373 2.08e-21 93.6
MS.gene79519.t1 MTR_4g100600 27.358 318 189 12 1 294 1 300 2.45e-21 92.8
MS.gene79519.t1 MTR_5g059140 26.481 287 189 8 7 282 40 315 2.47e-21 92.8
MS.gene79519.t1 MTR_8g075830 27.839 273 183 7 31 295 59 325 2.71e-21 93.2
MS.gene79519.t1 MTR_1g062110 25.868 317 194 9 7 301 64 361 2.85e-21 93.2
MS.gene79519.t1 MTR_7g062600 28.013 307 199 10 8 304 50 344 3.13e-21 92.8
MS.gene79519.t1 MTR_8g075890 26.014 296 203 9 8 295 38 325 3.43e-21 92.8
MS.gene79519.t1 MTR_1g070110 32.418 182 92 3 116 297 68 218 3.70e-21 90.5
MS.gene79519.t1 MTR_4g100590 26.518 313 202 10 1 300 1 298 5.01e-21 91.7
MS.gene79519.t1 MTR_3g117420 28.475 295 195 14 1 287 44 330 5.51e-21 92.0
MS.gene79519.t1 MTR_7g063730 26.168 321 210 10 8 314 63 370 8.22e-21 92.0
MS.gene79519.t1 MTR_1g102070 33.333 180 115 4 120 296 176 353 8.53e-21 92.0
MS.gene79519.t1 MTR_3g058610 27.899 276 183 8 29 295 57 325 8.75e-21 91.7
MS.gene79519.t1 MTR_5g082750 25.994 327 205 10 4 310 44 353 1.43e-20 91.3
MS.gene79519.t1 MTR_3g072820 26.756 299 197 11 5 293 38 324 1.99e-20 90.5
MS.gene79519.t1 MTR_2g072890 27.451 306 211 9 4 304 47 346 2.63e-20 90.5
MS.gene79519.t1 MTR_1g034120 25.574 305 199 8 10 294 33 329 3.42e-20 90.1
MS.gene79519.t1 MTR_4g087110 28.028 289 177 9 28 294 48 327 6.16e-20 89.4
MS.gene79519.t1 MTR_8g064200 27.869 305 202 10 8 304 51 345 9.67e-20 88.6
MS.gene79519.t1 MTR_8g064200 27.869 305 202 10 8 304 56 350 1.11e-19 88.6
MS.gene79519.t1 MTR_5g022020 26.780 295 202 9 8 295 38 325 1.46e-19 88.2
MS.gene79519.t1 MTR_1g033810 29.221 308 203 10 4 304 42 341 1.54e-19 88.2
MS.gene79519.t1 MTR_5g048470 26.367 311 211 10 2 304 46 346 2.59e-19 87.4
MS.gene79519.t1 MTR_1g034060 25.246 305 200 8 10 294 33 329 2.94e-19 87.4
MS.gene79519.t1 MTR_5g048550 27.097 310 211 10 1 304 39 339 4.51e-19 86.7
MS.gene79519.t1 MTR_2g437380 30.612 196 131 4 116 308 64 257 5.91e-19 85.1
MS.gene79519.t1 MTR_4g123020 27.215 316 188 12 1 295 9 303 6.05e-19 85.9
MS.gene79519.t1 MTR_4g087100 26.298 289 182 8 28 294 48 327 8.75e-19 85.9
MS.gene79519.t1 MTR_2g083000 25.086 291 196 8 8 293 32 305 1.07e-18 85.5
MS.gene79519.t1 MTR_7g062550 27.419 310 204 11 8 308 59 356 1.20e-18 85.9
MS.gene79519.t1 MTR_5g055690 26.384 307 202 10 9 304 47 340 1.21e-18 85.5
MS.gene79519.t1 MTR_0328s0030 27.759 299 203 9 2 295 38 328 2.24e-18 84.7
MS.gene79519.t1 MTR_8g074070 27.760 317 196 15 1 311 44 333 2.92e-18 84.3
MS.gene79519.t1 MTR_3g043900 25.902 305 209 10 9 308 56 348 3.74e-18 84.3
MS.gene79519.t1 MTR_2g025120 24.671 304 207 8 9 301 4 296 3.86e-18 83.6
MS.gene79519.t1 MTR_8g093980 23.418 316 228 6 7 313 57 367 4.49e-18 84.3
MS.gene79519.t1 MTR_3g088745 24.590 305 207 10 7 296 34 330 4.90e-18 84.0
MS.gene79519.t1 MTR_4g087140 32.000 175 113 5 124 294 156 328 5.52e-18 83.6
MS.gene79519.t1 MTR_3g045230 25.163 306 213 9 9 309 56 350 5.56e-18 83.6
MS.gene79519.t1 MTR_5g055820 28.114 281 189 9 36 308 69 344 8.74e-18 83.2
MS.gene79519.t1 MTR_3g117485 28.333 180 123 6 116 291 86 263 1.46e-17 81.6
MS.gene79519.t1 MTR_5g055800 28.283 297 199 10 3 294 41 328 3.23e-17 81.6
MS.gene79519.t1 MTR_3g117485 28.333 180 123 6 116 291 158 335 3.47e-17 81.3
MS.gene79519.t1 MTR_2g072910 25.974 308 215 9 3 304 45 345 3.79e-17 81.3
MS.gene79519.t1 MTR_7g102720 24.841 314 202 8 9 308 37 330 4.01e-17 80.9
MS.gene79519.t1 MTR_0009s0480 26.821 302 208 8 3 299 40 333 5.78e-17 80.9
MS.gene79519.t1 MTR_8g063070 23.529 323 221 12 3 311 61 371 8.56e-17 80.5
MS.gene79519.t1 MTR_6g092620 26.780 295 163 9 7 276 1 267 9.74e-17 79.3
MS.gene79519.t1 MTR_7g016090 24.342 304 203 7 5 297 35 322 1.07e-16 79.7
MS.gene79519.t1 MTR_4g087120 27.303 304 201 11 9 294 26 327 1.40e-16 79.7
MS.gene79519.t1 MTR_7g016090 24.342 304 203 7 5 297 37 324 1.42e-16 79.3
MS.gene79519.t1 MTR_3g091360 26.246 301 200 9 4 294 47 335 1.86e-16 79.3
MS.gene79519.t1 MTR_3g026150 25.649 308 208 11 3 301 54 349 2.17e-16 79.3
MS.gene79519.t1 MTR_2g068950 30.769 195 124 7 125 311 176 367 2.38e-16 79.0
MS.gene79519.t1 MTR_3g072810 25.182 274 194 8 28 293 51 321 2.58e-16 78.6
MS.gene79519.t1 MTR_1g086550 26.460 291 183 9 33 299 36 319 2.59e-16 79.0
MS.gene79519.t1 MTR_0009s0400 36.885 122 74 3 179 299 11 130 2.75e-16 75.1
MS.gene79519.t1 MTR_2g068840 24.765 319 204 10 9 308 55 356 2.75e-16 79.0
MS.gene79519.t1 MTR_5g065010 26.174 298 209 8 9 301 39 330 2.84e-16 78.6
MS.gene79519.t1 MTR_7g056347 22.571 319 221 10 7 311 65 371 2.89e-16 79.0
MS.gene79519.t1 MTR_2g033270 27.687 307 181 11 7 295 17 300 3.47e-16 78.2
MS.gene79519.t1 MTR_4g093840 30.220 182 121 5 118 295 169 348 3.61e-16 78.6
MS.gene79519.t1 MTR_4g115990 26.645 304 194 11 3 302 40 318 4.08e-16 78.2
MS.gene79519.t1 MTR_7g105070 26.101 318 207 12 3 307 53 355 4.27e-16 78.2
MS.gene79519.t1 MTR_3g088565 25.172 290 192 9 7 282 1 279 8.18e-16 77.0
MS.gene79519.t1 MTR_5g048850 30.256 195 132 4 116 308 151 343 8.62e-16 77.4
MS.gene79519.t1 MTR_3g040410 26.538 260 173 8 9 261 6 254 1.20e-15 76.6
MS.gene79519.t1 MTR_3g464530 27.698 278 157 11 35 293 49 301 1.32e-15 76.6
MS.gene79519.t1 MTR_3g091350 26.645 304 201 10 1 294 51 342 1.52e-15 76.6
MS.gene79519.t1 MTR_5g048740 26.490 302 210 7 8 304 44 338 2.03e-15 76.3
MS.gene79519.t1 MTR_2g068960 27.179 195 131 5 125 311 176 367 2.78e-15 75.9
MS.gene79519.t1 MTR_3g026150 26.210 248 173 8 60 301 3 246 2.98e-15 74.7
MS.gene79519.t1 MTR_0056s0160 26.667 195 139 4 116 308 36 228 3.00e-15 74.3
MS.gene79519.t1 MTR_2g069010 26.531 196 131 6 125 311 182 373 3.06e-15 75.9
MS.gene79519.t1 MTR_5g011250 25.333 300 208 9 8 296 46 340 3.52e-15 75.5
MS.gene79519.t1 MTR_0032s0040 23.701 308 208 10 3 297 64 357 4.29e-15 75.5
MS.gene79519.t1 MTR_4g087130 31.288 163 109 2 137 298 168 328 4.43e-15 75.5
MS.gene79519.t1 MTR_5g085330 25.962 312 201 11 6 301 2 299 6.75e-15 74.3
MS.gene79519.t1 MTR_6g088665 25.000 316 192 12 9 294 21 321 1.79e-14 73.6
MS.gene79519.t1 MTR_1g070135 27.039 233 143 6 9 229 38 255 2.40e-14 72.4
MS.gene79519.t1 MTR_7g062560 25.170 294 195 10 9 296 62 336 3.51e-14 72.8
MS.gene79519.t1 MTR_6g088665 25.159 314 195 12 9 294 21 322 3.56e-14 72.4
MS.gene79519.t1 MTR_8g461330 33.898 118 77 1 182 299 203 319 7.32e-14 71.6
MS.gene79519.t1 MTR_3g083370 24.104 307 213 9 9 309 4 296 1.97e-13 70.1
MS.gene79519.t1 MTR_8g028435 20.128 313 230 8 9 311 60 362 1.01e-12 68.6
MS.gene79519.t1 MTR_7g045650 29.365 252 149 12 8 246 59 294 1.50e-12 67.8
MS.gene79519.t1 MTR_4g096840 30.973 113 76 2 182 293 202 313 3.32e-12 66.6
MS.gene79519.t1 MTR_7g016080 22.667 300 205 8 8 300 40 319 7.84e-12 65.5
MS.gene79519.t1 MTR_4g132770 30.303 132 89 3 149 279 9 138 8.69e-12 62.8
MS.gene79519.t1 MTR_2g019370 30.508 118 79 3 182 298 203 318 9.44e-12 65.5
MS.gene79519.t1 MTR_1g070185 23.158 190 131 4 126 308 181 362 1.43e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79519.t1 AT1G52820 60.377 318 121 3 1 314 1 317 1.12e-142 405
MS.gene79519.t1 AT4G03070 52.751 309 134 4 7 308 12 315 7.45e-113 330
MS.gene79519.t1 AT1G28030 49.068 322 148 8 3 314 7 322 3.69e-102 302
MS.gene79519.t1 AT1G52820 59.916 237 91 2 1 234 1 236 2.97e-99 293
MS.gene79519.t1 AT1G52790 42.532 308 173 3 8 313 4 309 1.25e-90 273
MS.gene79519.t1 AT1G52800 43.042 309 171 4 8 314 9 314 1.91e-88 267
MS.gene79519.t1 AT1G52810 43.770 313 138 6 7 314 10 289 5.05e-82 250
MS.gene79519.t1 AT1G80320 35.556 315 189 6 9 314 9 318 2.75e-63 203
MS.gene79519.t1 AT1G15540 34.862 327 192 9 1 314 1 319 6.12e-58 189
MS.gene79519.t1 AT1G15540 34.862 327 192 9 1 314 1 319 6.12e-58 189
MS.gene79519.t1 AT1G15540 34.862 327 192 9 1 314 4 322 6.94e-58 189
MS.gene79519.t1 AT1G15540 34.862 327 192 9 1 314 8 326 8.34e-58 189
MS.gene79519.t1 AT4G03050 42.308 182 102 1 8 189 7 185 5.16e-43 153
MS.gene79519.t1 AT4G03050 47.826 138 69 3 179 314 271 407 9.28e-40 144
MS.gene79519.t1 AT4G03050 42.308 182 102 1 8 189 7 185 5.16e-43 153
MS.gene79519.t1 AT4G03050 47.826 138 69 3 179 314 271 407 9.28e-40 144
MS.gene79519.t1 AT4G23340 28.947 304 195 8 7 301 8 299 5.75e-32 121
MS.gene79519.t1 AT2G36690 27.974 311 190 9 7 301 59 351 1.59e-26 107
MS.gene79519.t1 AT2G36690 27.974 311 190 9 7 301 59 351 1.59e-26 107
MS.gene79519.t1 AT4G23340 32.967 182 113 4 128 301 1 181 3.46e-24 98.2
MS.gene79519.t1 AT2G38240 29.430 316 202 13 3 308 42 346 1.42e-23 99.4
MS.gene79519.t1 AT5G24530 27.097 310 188 8 9 300 38 327 1.68e-23 99.0
MS.gene79519.t1 AT5G05600 27.217 327 205 11 3 311 56 367 4.47e-23 98.2
MS.gene79519.t1 AT5G51310 25.949 316 199 9 7 301 3 304 4.81e-23 97.4
MS.gene79519.t1 AT1G78550 26.821 302 210 9 8 304 52 347 5.53e-23 97.8
MS.gene79519.t1 AT4G21690 25.912 274 186 6 35 294 63 333 1.03e-22 97.1
MS.gene79519.t1 AT1G78550 28.400 250 171 7 60 304 23 269 6.62e-22 93.6
MS.gene79519.t1 AT1G15550 25.170 294 202 4 9 295 57 339 7.31e-22 94.7
MS.gene79519.t1 AT5G20550 26.168 321 201 11 6 308 42 344 1.50e-21 94.0
MS.gene79519.t1 AT1G14120 27.243 301 202 5 9 303 8 297 2.05e-21 92.8
MS.gene79519.t1 AT1G14120 27.243 301 202 5 9 303 8 297 2.05e-21 92.8
MS.gene79519.t1 AT1G14120 27.243 301 202 5 9 303 8 297 2.05e-21 92.8
MS.gene79519.t1 AT5G51810 25.581 301 204 9 7 296 61 352 3.23e-21 93.2
MS.gene79519.t1 AT1G14130 25.773 291 204 4 1 290 1 280 5.04e-21 91.7
MS.gene79519.t1 AT3G55970 25.776 322 195 10 9 307 52 352 7.00e-21 92.0
MS.gene79519.t1 AT3G51240 25.497 302 209 9 8 301 37 330 8.01e-21 92.0
MS.gene79519.t1 AT3G13610 28.125 320 197 12 3 308 56 356 8.35e-21 92.0
MS.gene79519.t1 AT1G80330 26.421 299 196 8 9 295 49 335 1.12e-20 91.3
MS.gene79519.t1 AT1G50960 28.626 262 175 7 7 264 38 291 1.14e-20 91.3
MS.gene79519.t1 AT5G63590 28.094 299 190 12 7 293 12 297 1.79e-20 90.1
MS.gene79519.t1 AT4G10490 26.837 313 180 11 9 297 42 329 2.72e-20 90.1
MS.gene79519.t1 AT3G21420 26.543 324 195 11 8 308 54 357 2.81e-20 90.5
MS.gene79519.t1 AT4G25420 25.914 301 207 9 7 296 59 354 3.17e-20 90.5
MS.gene79519.t1 AT1G55290 27.010 311 200 10 9 308 62 356 3.77e-20 90.1
MS.gene79519.t1 AT3G19010 25.325 308 197 9 8 293 27 323 4.06e-20 89.7
MS.gene79519.t1 AT3G19010 25.325 308 197 9 8 293 27 323 4.06e-20 89.7
MS.gene79519.t1 AT4G21200 27.007 274 177 8 7 272 40 298 4.39e-20 89.4
MS.gene79519.t1 AT3G11180 28.165 316 204 11 7 311 93 396 5.57e-20 90.1
MS.gene79519.t1 AT3G11180 27.900 319 207 11 7 314 93 399 9.85e-20 89.4
MS.gene79519.t1 AT4G16330 25.862 290 197 9 29 308 78 359 1.04e-19 89.0
MS.gene79519.t1 AT1G30040 26.241 282 181 9 29 293 41 312 2.14e-19 87.8
MS.gene79519.t1 AT2G44800 27.419 310 207 10 9 310 52 351 2.41e-19 87.8
MS.gene79519.t1 AT5G43935 23.891 293 190 9 8 294 18 283 2.70e-19 86.7
MS.gene79519.t1 AT5G63600 24.074 270 191 6 32 294 49 311 5.18e-19 86.3
MS.gene79519.t1 AT5G08640 23.129 294 206 8 9 293 43 325 5.34e-19 86.3
MS.gene79519.t1 AT5G08640 23.129 294 206 8 9 293 43 325 5.34e-19 86.3
MS.gene79519.t1 AT5G63600 23.792 269 192 5 32 294 49 310 9.59e-19 85.5
MS.gene79519.t1 AT3G51240 30.570 193 118 7 117 301 62 246 1.42e-18 84.3
MS.gene79519.t1 AT5G20400 26.623 308 197 11 7 298 43 337 2.97e-18 84.3
MS.gene79519.t1 AT5G54000 27.597 308 194 12 7 298 44 338 3.37e-18 84.3
MS.gene79519.t1 AT5G07200 32.919 161 105 3 119 278 177 335 3.47e-18 84.7
MS.gene79519.t1 AT3G60290 26.984 315 217 9 1 310 45 351 3.65e-18 84.3
MS.gene79519.t1 AT4G16330 27.979 193 132 5 117 308 67 253 6.22e-18 82.0
MS.gene79519.t1 AT4G10500 25.079 315 210 10 9 311 44 344 1.73e-17 82.4
MS.gene79519.t1 AT1G80340 26.190 294 197 6 9 294 50 331 2.91e-17 81.6
MS.gene79519.t1 AT5G54000 31.746 189 120 7 116 298 73 258 3.18e-17 80.5
MS.gene79519.t1 AT3G19000 24.595 309 201 8 8 294 31 329 5.10e-17 80.9
MS.gene79519.t1 AT1G60980 29.897 194 130 4 104 296 163 351 5.31e-17 81.3
MS.gene79519.t1 AT2G34555 24.579 297 196 8 9 293 27 307 6.30e-17 80.5
MS.gene79519.t1 AT1G02400 26.974 304 189 10 9 295 24 311 1.63e-16 79.3
MS.gene79519.t1 AT3G19010 23.875 289 195 7 8 293 27 293 5.45e-16 77.8
MS.gene79519.t1 AT1G77330 26.370 292 176 9 7 280 1 271 6.85e-16 77.0
MS.gene79519.t1 AT4G25300 25.329 304 207 10 8 301 51 344 7.64e-16 77.4
MS.gene79519.t1 AT4G25310 27.106 273 185 9 36 301 76 341 9.67e-16 77.4
MS.gene79519.t1 AT5G43440 23.127 307 195 8 7 293 60 345 1.17e-15 77.0
MS.gene79519.t1 AT1G44090 34.351 131 83 3 167 296 229 357 1.39e-15 77.0
MS.gene79519.t1 AT5G59540 25.962 312 200 11 2 297 54 350 2.74e-15 75.9
MS.gene79519.t1 AT5G43450 24.679 312 194 10 7 299 59 348 3.83e-15 75.5
MS.gene79519.t1 AT1G17010 26.045 311 212 9 3 304 48 349 4.11e-15 75.5
MS.gene79519.t1 AT1G49390 24.762 315 210 10 2 302 38 339 4.27e-15 75.5
MS.gene79519.t1 AT5G07480 28.042 189 127 5 116 297 42 228 4.47e-15 73.9
MS.gene79519.t1 AT5G59530 25.939 293 185 12 7 282 56 333 4.51e-15 75.5
MS.gene79519.t1 AT2G19590 26.552 290 174 9 4 277 6 272 5.81e-15 74.7
MS.gene79519.t1 AT5G63595 23.282 262 177 6 9 270 25 262 7.45e-15 73.9
MS.gene79519.t1 AT2G19590 30.682 176 111 5 110 277 85 257 7.52e-15 73.9
MS.gene79519.t1 AT5G07480 28.042 189 127 5 116 297 151 337 1.01e-14 74.3
MS.gene79519.t1 AT1G03410 30.000 180 119 6 126 300 172 349 1.15e-14 74.3
MS.gene79519.t1 AT1G03410 30.000 180 119 6 126 300 209 386 1.22e-14 74.3
MS.gene79519.t1 AT1G49390 27.076 277 169 10 40 302 3 260 1.49e-14 72.8
MS.gene79519.t1 AT1G06620 26.923 182 121 5 126 300 176 352 2.19e-14 73.6
MS.gene79519.t1 AT4G22880 25.163 306 201 11 8 296 46 340 3.23e-14 72.8
MS.gene79519.t1 AT4G22880 25.163 306 201 11 8 296 46 340 3.23e-14 72.8
MS.gene79519.t1 AT4G22880 25.163 306 201 11 8 296 46 340 3.23e-14 72.8
MS.gene79519.t1 AT1G47990 28.191 188 118 4 124 295 115 301 6.23e-14 71.6
MS.gene79519.t1 AT1G06650 28.571 175 118 6 131 300 184 356 1.25e-13 71.2
MS.gene79519.t1 AT1G78440 26.042 288 175 11 30 293 29 302 1.53e-13 70.5
MS.gene79519.t1 AT4G16765 26.984 189 127 5 117 295 50 237 1.63e-13 69.7
MS.gene79519.t1 AT4G16765 26.984 189 127 5 117 295 50 237 1.63e-13 69.7
MS.gene79519.t1 AT4G16765 26.984 189 127 5 117 295 50 237 1.63e-13 69.7
MS.gene79519.t1 AT3G12900 24.590 305 210 9 12 308 59 351 1.91e-13 70.5
MS.gene79519.t1 AT3G61400 28.022 182 124 6 126 301 179 359 8.53e-13 68.6
MS.gene79519.t1 AT5G05600 28.750 240 158 10 3 234 56 290 1.24e-12 67.8
MS.gene79519.t1 AT1G17020 25.095 263 182 10 7 261 51 306 1.44e-12 67.8
MS.gene79519.t1 AT3G50210 24.062 320 204 12 9 294 8 322 2.39e-12 67.0
MS.gene79519.t1 AT3G50210 24.062 320 204 12 9 294 8 322 2.39e-12 67.0
MS.gene79519.t1 AT3G50210 24.062 320 204 12 9 294 8 322 2.39e-12 67.0
MS.gene79519.t1 AT4G16765 34.483 116 72 2 183 295 77 191 2.73e-12 65.1
MS.gene79519.t1 AT3G55970 24.900 249 146 9 9 234 52 282 3.17e-12 66.6
MS.gene79519.t1 AT5G43440 24.291 247 149 7 7 236 60 285 5.57e-12 65.9
MS.gene79519.t1 AT3G46490 23.490 298 180 11 6 272 14 294 5.63e-12 65.9
MS.gene79519.t1 AT1G12010 23.077 299 212 7 4 297 2 287 6.90e-12 65.9
MS.gene79519.t1 AT4G16765 27.545 167 112 4 124 282 59 224 8.10e-12 64.3
MS.gene79519.t1 AT1G04350 22.785 316 201 12 3 297 52 345 2.51e-11 64.3
MS.gene79519.t1 AT2G30840 26.738 187 130 7 126 308 173 356 2.70e-11 64.3
MS.gene79519.t1 AT5G63580 27.966 236 146 9 9 234 19 240 7.21e-11 62.0
MS.gene79519.t1 AT1G03400 26.667 180 125 6 126 300 162 339 8.09e-11 62.8
MS.gene79519.t1 AT1G30040 25.225 222 139 9 30 234 42 253 8.99e-11 62.0

Find 79 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAAACCTTCCACTTGATTT+TGG 0.165013 4.2:+88674277 None:intergenic
CTCCTCGGAGAAGGAATTTA+TGG 0.165333 4.2:+88674488 None:intergenic
TTTATAATGTACCCTTCTTT+GGG 0.224285 4.2:+88673869 None:intergenic
CATAACCCTGAGATGGTAAT+TGG 0.227792 4.2:+88674380 None:intergenic
GCTTATCCATTGTCCATCTT+TGG 0.274641 4.2:+88674245 None:intergenic
TCCATCCGGCCACAAGATAT+TGG 0.302776 4.2:+88674880 None:intergenic
TAACTCCCAATTGGGACTTT+TGG 0.307103 4.2:+88675156 None:intergenic
CTCTTCTAGTGAAGTAAATA+TGG 0.310135 4.2:+88675048 None:intergenic
AGCTACAAGTCTTCTTCTTC+AGG 0.328794 4.2:-88674225 MS.gene79519:CDS
AGGTTATTGAAGTCAATTAT+TGG 0.351381 4.2:+88675190 None:intergenic
AGTGAAGTCCCAAGTCTATA+AGG 0.368829 4.2:-88675134 MS.gene79519:CDS
AAGCCTTATGATGGCTATCT+TGG 0.371205 4.2:-88674980 MS.gene79519:CDS
CTCATCATCACCCGGTGAAA+TGG 0.378285 4.2:+88673932 None:intergenic
GGACTTCACTAACTCCCAAT+TGG 0.386844 4.2:+88675147 None:intergenic
GGCTGCATTCGCCATTTCAC+CGG 0.398369 4.2:-88673943 MS.gene79519:CDS
TATAAGGCATTAGCAGAGTA+TGG 0.406334 4.2:-88675118 MS.gene79519:CDS
TCCTCATCCACCAGCTCCTC+CGG 0.417316 4.2:+88673842 None:intergenic
TGGAAGCCAAAAGTCCCAAT+TGG 0.421664 4.2:-88675162 MS.gene79519:CDS
ACTCAACCAATTACCATCTC+AGG 0.428477 4.2:-88674386 MS.gene79519:CDS
CTGCTAATGCCTTATAGACT+TGG 0.437929 4.2:+88675125 None:intergenic
TCCGGAGGAGCTGGTGGATG+AGG 0.453378 4.2:-88673843 MS.gene79519:CDS
TTGAGTAGCTTAGTCTCTAA+AGG 0.454248 4.2:+88675013 None:intergenic
CTCTCATAAAGTGGAACTAC+AGG 0.468829 4.2:+88674950 None:intergenic
TATAAAAGCTCCGGAGGAGC+TGG 0.478262 4.2:-88673852 MS.gene79519:CDS
CTCAATTAGCTCCTCGGAGA+AGG 0.480469 4.2:+88674479 None:intergenic
GACTTCACTAACTCCCAATT+GGG 0.486736 4.2:+88675148 None:intergenic
TGAGTAGCTTAGTCTCTAAA+GGG 0.493999 4.2:+88675014 None:intergenic
CTCCGAGGAGCTAATTGAGT+TGG 0.496308 4.2:-88674475 MS.gene79519:CDS
AGGAACTCAGCATAATCAAA+AGG 0.497152 4.2:+88673800 None:intergenic
ATCCAACTCAATTAGCTCCT+CGG 0.499257 4.2:+88674473 None:intergenic
TGACCAAGATAGCCATCATA+AGG 0.499656 4.2:+88674977 None:intergenic
ATGGCTTTGCGAAGGTGTAA+AGG 0.500853 4.2:+88675067 None:intergenic
ACCAATATCTTGTGGCCGGA+TGG 0.502522 4.2:-88674881 MS.gene79519:CDS
AATTATTGGAAGCTTTAGAA+TGG 0.504433 4.2:+88675204 None:intergenic
GTGTCTAATAAGCCTTATGA+TGG 0.509211 4.2:-88674989 MS.gene79519:CDS
CGGTCTGTGCGCACTTATTG+TGG 0.509968 4.2:-88673743 MS.gene79519:CDS
GGAAGCCAAAAGTCCCAATT+GGG 0.510341 4.2:-88675161 MS.gene79519:CDS
TGACTTCAATAACCTCAACT+TGG 0.518399 4.2:-88675182 MS.gene79519:CDS
AGGGTACATTATAAAAGCTC+CGG 0.518778 4.2:-88673861 MS.gene79519:CDS
TTTCACGCTCGAGAAGGCGT+GGG 0.522167 4.2:-88673770 MS.gene79519:CDS
GCTGCATTCGCCATTTCACC+GGG 0.528558 4.2:-88673942 MS.gene79519:CDS
TTCACGCTCGAGAAGGCGTG+GGG 0.534148 4.2:-88673769 MS.gene79519:CDS
AATGAGGCAAGGTATTCAGC+AGG 0.534999 4.2:-88673905 MS.gene79519:CDS
ATGGCCATCCTCTCATAAAG+TGG 0.539466 4.2:+88674941 None:intergenic
CACGACCAATATCTTGTGGC+CGG 0.542340 4.2:-88674885 MS.gene79519:CDS
TTATAATGTACCCTTCTTTG+GGG 0.548996 4.2:+88673870 None:intergenic
CAAACAAGTGACACAAAACT+AGG 0.550916 4.2:-88674342 MS.gene79519:CDS
AAAAGCTCCGGAGGAGCTGG+TGG 0.554268 4.2:-88673849 MS.gene79519:CDS
TTGTACCAAAATCAAGTGGA+AGG 0.554694 4.2:-88674282 MS.gene79519:CDS
TTTAGGTGTTGAAAAGTGCA+TGG 0.562544 4.2:-88674421 MS.gene79519:CDS
TTAGAGATGATGACCAAAGA+TGG 0.562948 4.2:-88674258 MS.gene79519:CDS
TGTACTTCATAACCCTGAGA+TGG 0.565517 4.2:+88674373 None:intergenic
TGCTAATGCCTTATAGACTT+GGG 0.570558 4.2:+88675126 None:intergenic
CTGTAGTTCCACTTTATGAG+AGG 0.580451 4.2:-88674949 MS.gene79519:CDS
AGTTCCACTTTATGAGAGGA+TGG 0.582196 4.2:-88674945 MS.gene79519:CDS
CATATTGTACCAAAATCAAG+TGG 0.585592 4.2:-88674286 MS.gene79519:CDS
TTTCACCGGGTGATGATGAG+TGG 0.590400 4.2:-88673929 MS.gene79519:CDS
CATTCCCACTCATCATCACC+CGG 0.593548 4.2:+88673924 None:intergenic
ACAAAGTTCTTGTCAGTGTG+TGG 0.594909 4.2:+88674312 None:intergenic
TATAATGTACCCTTCTTTGG+GGG 0.599958 4.2:+88673871 None:intergenic
CTCGAGCGTGAAAATACTTG+AGG 0.604032 4.2:+88673780 None:intergenic
CTCAACCAATTACCATCTCA+GGG 0.604591 4.2:-88674385 MS.gene79519:CDS
TGCAGGCATGGTCAAACGGG+AGG 0.605635 4.2:-88673964 MS.gene79519:intron
TTCACCGGGTGATGATGAGT+GGG 0.609819 4.2:-88673928 MS.gene79519:CDS
TGATGACCAAAGATGGACAA+TGG 0.610775 4.2:-88674251 MS.gene79519:CDS
TAAGATATTTGCATCCTCGA+TGG 0.613439 4.2:+88674922 None:intergenic
GGTGATGATGAGTGGGAATG+AGG 0.615235 4.2:-88673921 MS.gene79519:CDS
TCTTGTCAGTGTGTGGACTG+AGG 0.624048 4.2:+88674319 None:intergenic
CTCAGGGTTATGAAGTACAA+AGG 0.637097 4.2:-88674369 MS.gene79519:CDS
AAAGCACGACCAATATCTTG+TGG 0.639997 4.2:-88674889 MS.gene79519:CDS
TGATGAGTGGGAATGAGGCA+AGG 0.659052 4.2:-88673916 MS.gene79519:CDS
AAGTAAATATGGCTTTGCGA+AGG 0.659208 4.2:+88675059 None:intergenic
GTACATTATAAAAGCTCCGG+AGG 0.668840 4.2:-88673858 MS.gene79519:CDS
ATGAGGCAAGGTATTCAGCA+GGG 0.682721 4.2:-88673904 MS.gene79519:CDS
AACCATAAATTCCTTCTCCG+AGG 0.691780 4.2:-88674490 MS.gene79519:CDS
TCACGCTCGAGAAGGCGTGG+GGG 0.693622 4.2:-88673768 MS.gene79519:CDS
GTAGCTTAGTCTCTAAAGGG+AGG 0.695642 4.2:+88675017 None:intergenic
TTATGAGAGGATGGCCATCG+AGG 0.726896 4.2:-88674936 MS.gene79519:CDS
AGGTGTTGAAAAGTGCATGG+AGG 0.731560 4.2:-88674418 MS.gene79519:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTATTAAAAAGATGATTT+TGG - chr4.2:88674505-88674524 MS.gene79519:intron 10.0%
!!! TTTAAAATATTAACAACTTT+AGG + chr4.2:88674156-88674175 None:intergenic 10.0%
!! AAAAGCAAATCAAATTAATT+AGG + chr4.2:88674436-88674455 None:intergenic 15.0%
!! AAAGCAAATCAAATTAATTA+GGG + chr4.2:88674435-88674454 None:intergenic 15.0%
!! AATAATAAATTTCAACAACA+TGG + chr4.2:88674921-88674940 None:intergenic 15.0%
!! ATTTATAAATAACCATCAAT+TGG - chr4.2:88674808-88674827 MS.gene79519:intron 15.0%
!! GTTGTTGAAATTTATTATTA+TGG - chr4.2:88674922-88674941 MS.gene79519:CDS 15.0%
!!! TATTAGTTCTAATGATAAAT+AGG + chr4.2:88674398-88674417 None:intergenic 15.0%
!! TATAAATGATGAATAGTGAA+TGG + chr4.2:88674795-88674814 None:intergenic 20.0%
! AGGTTATTGAAGTCAATTAT+TGG + chr4.2:88673766-88673785 None:intergenic 25.0%
! TCAATCAAGATATAATGTTG+AGG + chr4.2:88674119-88674138 None:intergenic 25.0%
! TTTATAATGTACCCTTCTTT+GGG + chr4.2:88675087-88675106 None:intergenic 25.0%
!! AATTCTCATGTAAATTTTGC+AGG - chr4.2:88674972-88674991 MS.gene79519:CDS 25.0%
!! CTAAAAAATTTGTTTCCATC+CGG + chr4.2:88674090-88674109 None:intergenic 25.0%
!! TTTTATAATGTACCCTTCTT+TGG + chr4.2:88675088-88675107 None:intergenic 25.0%
!!! AAGATGATTTTGGAAAGTTT+AGG - chr4.2:88674515-88674534 MS.gene79519:intron 25.0%
!!! AATTATTGGAAGCTTTAGAA+TGG + chr4.2:88673752-88673771 None:intergenic 25.0%
CAAAAGGCTTAAAAAGCAAA+GGG + chr4.2:88675140-88675159 None:intergenic 30.0%
CATATTGTACCAAAATCAAG+TGG - chr4.2:88674667-88674686 MS.gene79519:intron 30.0%
CTCTTCTAGTGAAGTAAATA+TGG + chr4.2:88673908-88673927 None:intergenic 30.0%
CTTCATTAGTTACCAATTGA+TGG + chr4.2:88674823-88674842 None:intergenic 30.0%
GTCTCTTCAAACATCTTTAA+TGG - chr4.2:88674197-88674216 MS.gene79519:CDS 30.0%
TCAAAAGGCTTAAAAAGCAA+AGG + chr4.2:88675141-88675160 None:intergenic 30.0%
TTATAATGTACCCTTCTTTG+GGG + chr4.2:88675086-88675105 None:intergenic 30.0%
!! CACTTGATTTTGGTACAATA+TGG + chr4.2:88674669-88674688 None:intergenic 30.0%
!! GTTTACAAAGTTTTATAGCC+AGG + chr4.2:88674368-88674387 None:intergenic 30.0%
!!! CGGATGGAAACAAATTTTTT+AGG - chr4.2:88674088-88674107 MS.gene79519:intron 30.0%
AGGAACTCAGCATAATCAAA+AGG + chr4.2:88675156-88675175 None:intergenic 35.0%
AGGGTACATTATAAAAGCTC+CGG - chr4.2:88675092-88675111 MS.gene79519:CDS 35.0%
CAAACAAGTGACACAAAACT+AGG - chr4.2:88674611-88674630 MS.gene79519:intron 35.0%
TAAGATATTTGCATCCTCGA+TGG + chr4.2:88674034-88674053 None:intergenic 35.0%
TATAATGTACCCTTCTTTGG+GGG + chr4.2:88675085-88675104 None:intergenic 35.0%
TCCTTAACAAGTTTCGTCAT+TGG - chr4.2:88674255-88674274 MS.gene79519:CDS 35.0%
TGACTTCAATAACCTCAACT+TGG - chr4.2:88673771-88673790 MS.gene79519:CDS 35.0%
TGAGTAGCTTAGTCTCTAAA+GGG + chr4.2:88673942-88673961 None:intergenic 35.0%
TGCTAATGCCTTATAGACTT+GGG + chr4.2:88673830-88673849 None:intergenic 35.0%
TTAGAGATGATGACCAAAGA+TGG - chr4.2:88674695-88674714 MS.gene79519:intron 35.0%
TTGAGTAGCTTAGTCTCTAA+AGG + chr4.2:88673943-88673962 None:intergenic 35.0%
TTGTACCAAAATCAAGTGGA+AGG - chr4.2:88674671-88674690 MS.gene79519:intron 35.0%
! AAGTAAATATGGCTTTGCGA+AGG + chr4.2:88673897-88673916 None:intergenic 35.0%
! CTAAACCTTCCACTTGATTT+TGG + chr4.2:88674679-88674698 None:intergenic 35.0%
! GTGTCTAATAAGCCTTATGA+TGG - chr4.2:88673964-88673983 MS.gene79519:intron 35.0%
! TATAAGGCATTAGCAGAGTA+TGG - chr4.2:88673835-88673854 MS.gene79519:CDS 35.0%
! TCATGTAAATTTTGCAGGCA+TGG - chr4.2:88674977-88674996 MS.gene79519:CDS 35.0%
!! TCCAATGACGAAACTTGTTA+AGG + chr4.2:88674259-88674278 None:intergenic 35.0%
!! TTTAGGTGTTGAAAAGTGCA+TGG - chr4.2:88674532-88674551 MS.gene79519:intron 35.0%
!!! AGTTTTGTGTCACTTGTTTG+AGG + chr4.2:88674611-88674630 None:intergenic 35.0%
!!! GTTTTGTGTCACTTGTTTGA+GGG + chr4.2:88674610-88674629 None:intergenic 35.0%
AAAGCACGACCAATATCTTG+TGG - chr4.2:88674064-88674083 MS.gene79519:intron 40.0%
AACAAGTTTCGTCATTGGAG+AGG - chr4.2:88674260-88674279 MS.gene79519:CDS 40.0%
AACCATAAATTCCTTCTCCG+AGG - chr4.2:88674463-88674482 MS.gene79519:CDS 40.0%
ACAAAGTTCTTGTCAGTGTG+TGG + chr4.2:88674644-88674663 None:intergenic 40.0%
ACTCAACCAATTACCATCTC+AGG - chr4.2:88674567-88674586 MS.gene79519:intron 40.0%
AGCTACAAGTCTTCTTCTTC+AGG - chr4.2:88674728-88674747 MS.gene79519:intron 40.0%
AGTGAAGTCCCAAGTCTATA+AGG - chr4.2:88673819-88673838 MS.gene79519:CDS 40.0%
AGTTCCACTTTATGAGAGGA+TGG - chr4.2:88674008-88674027 MS.gene79519:intron 40.0%
ATCCAACTCAATTAGCTCCT+CGG + chr4.2:88674483-88674502 None:intergenic 40.0%
CAAGTTTCTTCAAAGTGACC+TGG - chr4.2:88674347-88674366 MS.gene79519:CDS 40.0%
CATAACCCTGAGATGGTAAT+TGG + chr4.2:88674576-88674595 None:intergenic 40.0%
CTCAACCAATTACCATCTCA+GGG - chr4.2:88674568-88674587 MS.gene79519:intron 40.0%
CTCAGGGTTATGAAGTACAA+AGG - chr4.2:88674584-88674603 MS.gene79519:intron 40.0%
CTCTCATAAAGTGGAACTAC+AGG + chr4.2:88674006-88674025 None:intergenic 40.0%
CTGCTAATGCCTTATAGACT+TGG + chr4.2:88673831-88673850 None:intergenic 40.0%
CTGTAGTTCCACTTTATGAG+AGG - chr4.2:88674004-88674023 MS.gene79519:intron 40.0%
GACTTCACTAACTCCCAATT+GGG + chr4.2:88673808-88673827 None:intergenic 40.0%
GCTTATCCATTGTCCATCTT+TGG + chr4.2:88674711-88674730 None:intergenic 40.0%
GTACATTATAAAAGCTCCGG+AGG - chr4.2:88675095-88675114 MS.gene79519:CDS 40.0%
TGACCAAGATAGCCATCATA+AGG + chr4.2:88673979-88673998 None:intergenic 40.0%
TGATGACCAAAGATGGACAA+TGG - chr4.2:88674702-88674721 MS.gene79519:intron 40.0%
TGTACTTCATAACCCTGAGA+TGG + chr4.2:88674583-88674602 None:intergenic 40.0%
! AAGCCTTATGATGGCTATCT+TGG - chr4.2:88673973-88673992 MS.gene79519:intron 40.0%
! AAGTATTTTCACGCTCGAGA+AGG - chr4.2:88675177-88675196 MS.gene79519:CDS 40.0%
! ATTTTGCAGGCATGGTCAAA+CGG - chr4.2:88674985-88675004 MS.gene79519:CDS 40.0%
! TAACTCCCAATTGGGACTTT+TGG + chr4.2:88673800-88673819 None:intergenic 40.0%
!! GGCAGTTTTGTAGTTGTGAT+TGG - chr4.2:88674749-88674768 MS.gene79519:intron 40.0%
AAATGCATGTGACCACGATC+TGG + chr4.2:88674892-88674911 None:intergenic 45.0%
AATGCATGTGACCACGATCT+GGG + chr4.2:88674891-88674910 None:intergenic 45.0%
ATGGCCATCCTCTCATAAAG+TGG + chr4.2:88674015-88674034 None:intergenic 45.0%
CTCCTCGGAGAAGGAATTTA+TGG + chr4.2:88674468-88674487 None:intergenic 45.0%
CTCGAGCGTGAAAATACTTG+AGG + chr4.2:88675176-88675195 None:intergenic 45.0%
GGAAGCCAAAAGTCCCAATT+GGG - chr4.2:88673792-88673811 MS.gene79519:CDS 45.0%
GGACTTCACTAACTCCCAAT+TGG + chr4.2:88673809-88673828 None:intergenic 45.0%
TGGAAGCCAAAAGTCCCAAT+TGG - chr4.2:88673791-88673810 MS.gene79519:CDS 45.0%
TGTTCTCTACCCCCAAAGAA+GGG - chr4.2:88675073-88675092 MS.gene79519:CDS 45.0%
TTGTTCTCTACCCCCAAAGA+AGG - chr4.2:88675072-88675091 MS.gene79519:CDS 45.0%
! AATGAGGCAAGGTATTCAGC+AGG - chr4.2:88675048-88675067 MS.gene79519:CDS 45.0%
! ATGAGGCAAGGTATTCAGCA+GGG - chr4.2:88675049-88675068 MS.gene79519:CDS 45.0%
! ATGGCTTTGCGAAGGTGTAA+AGG + chr4.2:88673889-88673908 None:intergenic 45.0%
! GTAGCTTAGTCTCTAAAGGG+AGG + chr4.2:88673939-88673958 None:intergenic 45.0%
! TTTTGCAGGCATGGTCAAAC+GGG - chr4.2:88674986-88675005 MS.gene79519:CDS 45.0%
!! AGGTGTTGAAAAGTGCATGG+AGG - chr4.2:88674535-88674554 MS.gene79519:intron 45.0%
!!! GACTTTTGGCTTCCAAGTTG+AGG + chr4.2:88673786-88673805 None:intergenic 45.0%
ACCAATATCTTGTGGCCGGA+TGG - chr4.2:88674072-88674091 MS.gene79519:intron 50.0%
CACGACCAATATCTTGTGGC+CGG - chr4.2:88674068-88674087 MS.gene79519:intron 50.0%
CATTCCCACTCATCATCACC+CGG + chr4.2:88675032-88675051 None:intergenic 50.0%
CTCAATTAGCTCCTCGGAGA+AGG + chr4.2:88674477-88674496 None:intergenic 50.0%
CTCATCATCACCCGGTGAAA+TGG + chr4.2:88675024-88675043 None:intergenic 50.0%
CTCCGAGGAGCTAATTGAGT+TGG - chr4.2:88674478-88674497 MS.gene79519:CDS 50.0%
TATAAAAGCTCCGGAGGAGC+TGG - chr4.2:88675101-88675120 MS.gene79519:CDS 50.0%
TCCATCCGGCCACAAGATAT+TGG + chr4.2:88674076-88674095 None:intergenic 50.0%
TGATGAGTGGGAATGAGGCA+AGG - chr4.2:88675037-88675056 MS.gene79519:CDS 50.0%
TTATGAGAGGATGGCCATCG+AGG - chr4.2:88674017-88674036 MS.gene79519:intron 50.0%
! GGTGATGATGAGTGGGAATG+AGG - chr4.2:88675032-88675051 MS.gene79519:CDS 50.0%
! TCTTGTCAGTGTGTGGACTG+AGG + chr4.2:88674637-88674656 None:intergenic 50.0%
! TTCACCGGGTGATGATGAGT+GGG - chr4.2:88675025-88675044 MS.gene79519:CDS 50.0%
! TTTCACCGGGTGATGATGAG+TGG - chr4.2:88675024-88675043 MS.gene79519:CDS 50.0%
CGGTCTGTGCGCACTTATTG+TGG - chr4.2:88675210-88675229 MS.gene79519:CDS 55.0%
GCTGCATTCGCCATTTCACC+GGG - chr4.2:88675011-88675030 MS.gene79519:CDS 55.0%
GGCTGCATTCGCCATTTCAC+CGG - chr4.2:88675010-88675029 MS.gene79519:CDS 55.0%
! TTTCACGCTCGAGAAGGCGT+GGG - chr4.2:88675183-88675202 MS.gene79519:CDS 55.0%
! TTTTCACGCTCGAGAAGGCG+TGG - chr4.2:88675182-88675201 MS.gene79519:CDS 55.0%
AAAAGCTCCGGAGGAGCTGG+TGG - chr4.2:88675104-88675123 MS.gene79519:CDS 60.0%
TCCTCATCCACCAGCTCCTC+CGG + chr4.2:88675114-88675133 None:intergenic 60.0%
TGCAGGCATGGTCAAACGGG+AGG - chr4.2:88674989-88675008 MS.gene79519:CDS 60.0%
TGTGACCACGATCTGGGCTG+CGG + chr4.2:88674885-88674904 None:intergenic 60.0%
! TTCACGCTCGAGAAGGCGTG+GGG - chr4.2:88675184-88675203 MS.gene79519:CDS 60.0%
TGATGCCGCAGCCCAGATCG+TGG - chr4.2:88674877-88674896 MS.gene79519:CDS 65.0%
! TCACGCTCGAGAAGGCGTGG+GGG - chr4.2:88675185-88675204 MS.gene79519:CDS 65.0%
! TCCGGAGGAGCTGGTGGATG+AGG - chr4.2:88675110-88675129 MS.gene79519:CDS 65.0%
! CTCGAGAAGGCGTGGGGGCT+CGG - chr4.2:88675190-88675209 MS.gene79519:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 88673736 88675239 88673736 ID=MS.gene79519
chr4.2 mRNA 88673736 88675239 88673736 ID=MS.gene79519.t1;Parent=MS.gene79519
chr4.2 exon 88674866 88675239 88674866 ID=MS.gene79519.t1.exon1;Parent=MS.gene79519.t1
chr4.2 CDS 88674866 88675239 88674866 ID=cds.MS.gene79519.t1;Parent=MS.gene79519.t1
chr4.2 exon 88674191 88674515 88674191 ID=MS.gene79519.t1.exon2;Parent=MS.gene79519.t1
chr4.2 CDS 88674191 88674515 88674191 ID=cds.MS.gene79519.t1;Parent=MS.gene79519.t1
chr4.2 exon 88673736 88673981 88673736 ID=MS.gene79519.t1.exon3;Parent=MS.gene79519.t1
chr4.2 CDS 88673736 88673981 88673736 ID=cds.MS.gene79519.t1;Parent=MS.gene79519.t1
Gene Sequence

>MS.gene79519

ATGGGCTCAGAAACCATTCTAAAGCTTCCAATAATTGACTTCAATAACCTCAACTTGGAAGCCAAAAGTCCCAATTGGGAGTTAGTGAAGTCCCAAGTCTATAAGGCATTAGCAGAGTATGGTTGCTTCGAAGCAATTTTTGATAAAGTTCCTTTACACCTTCGCAAAGCCATATTTACTTCACTAGAAGAGCTCTTTGACCTCCCTTTAGAGACTAAGCTACTCAATGTGTCTAATAAGCCTTATGATGGCTATCTTGGTCAATATCCTGTAGTTCCACTTTATGAGAGGATGGCCATCGAGGATGCAAATATCTTAGAGAAAGTAAAAAGCACGACCAATATCTTGTGGCCGGATGGAAACAAATTTTTTAGGTACGTCCTCAACATTATATCTTGATTGAATCATCAGTTAGAACCTAAAGTTGTTAATATTTTAAAATAGTCTCTAACATCGAAAATGTCTCTTCAAACATCTTTAATGGTAGTCTTTAGAGAGTTTTAAACTTCAAAAAGTTTATCCTTAACAAGTTTCGTCATTGGAGAGGATTGATGCGACATAAAGTTGAAATGACGAATCATTACTAAAACAACTCGTCGTTAACAATATCTCAAGTTTCTTCAAAGTGACCTGGCTATAAAACTTTGTAAACTTTATATCCTATTTATCATTAGAACTAATATTTCATTAATTAGTCCCTAATTAATTTGATTTGCTTTTGCAGTGAAACCATAAATTCCTTCTCCGAGGAGCTAATTGAGTTGGATCAAATTATTAAAAAGATGATTTTGGAAAGTTTAGGTGTTGAAAAGTGCATGGAGGAACACATGAACTCAACCAATTACCATCTCAGGGTTATGAAGTACAAAGGCCCTCAAACAAGTGACACAAAACTAGGCCTCAGTCCACACACTGACAAGAACTTTGTGACCATATTGTACCAAAATCAAGTGGAAGGTTTAGAGATGATGACCAAAGATGGACAATGGATAAGCTACAAGTCTTCTTCTTCAGGCAGTTTTGTAGTTGTGATTGGTGATTCTATGCATGTAAATTCCATTCACTATTCATCATTTATAAATAACCATCAATTGGTAACTAATGAAGTTTTAAATCAGTGTCATGATAGCATAAAAATCTCTGATGCCGCAGCCCAGATCGTGGTCACATGCATTTATAAAACCATGTTGTTGAAATTTATTATTATGGCATTTGTTGAATTATTTTGAAAATTTTAATTCTCATGTAAATTTTGCAGGCATGGTCAAACGGGAGGCTGCATTCGCCATTTCACCGGGTGATGATGAGTGGGAATGAGGCAAGGTATTCAGCAGGGTTGTTCTCTACCCCCAAAGAAGGGTACATTATAAAAGCTCCGGAGGAGCTGGTGGATGAGGAGCACCCTTTGCTTTTTAAGCCTTTTGATTATGCTGAGTTCCTCAAGTATTTTCACGCTCGAGAAGGCGTGGGGGCTCGGTCTGTGCGCACTTATTGTGGTGTTTGA

Protein sequence

>MS.gene79519.t1

MGSETILKLPIIDFNNLNLEAKSPNWELVKSQVYKALAEYGCFEAIFDKVPLHLRKAIFTSLEELFDLPLETKLLNVSNKPYDGYLGQYPVVPLYERMAIEDANILEKVKSTTNILWPDGNKFFSETINSFSEELIELDQIIKKMILESLGVEKCMEEHMNSTNYHLRVMKYKGPQTSDTKLGLSPHTDKNFVTILYQNQVEGLEMMTKDGQWISYKSSSSGSFVVVIGDSMHAWSNGRLHSPFHRVMMSGNEARYSAGLFSTPKEGYIIKAPEELVDEEHPLLFKPFDYAEFLKYFHAREGVGARSVRTYCGV