AlfalfaGEDB | MS.gene065465

M. sativa cultivar XinJiangDaYe / MS.gene065465

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065465.t1	XP_003624398.1	97.6	125	3	0	1	125	2	126	2.70E-60	241.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065465.t1	G7KV85	97.6	125	3	0	1	125	2	126	2.0e-60	241.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049232	MS.gene065465	-0.800719	1.26E-48	-1.69E-46
MS.gene049281	MS.gene065465	0.815533	8.80E-52	-1.69E-46
MS.gene049312	MS.gene065465	0.812843	3.46E-51	-1.69E-46
MS.gene049611	MS.gene065465	0.818581	1.82E-52	-1.69E-46
MS.gene050216	MS.gene065465	-0.801521	8.66E-49	-1.69E-46
MS.gene050363	MS.gene065465	0.803621	3.19E-49	-1.69E-46
MS.gene050380	MS.gene065465	0.849803	2.56E-60	-1.69E-46
MS.gene050381	MS.gene065465	0.895091	1.33E-75	-1.69E-46
MS.gene050504	MS.gene065465	-0.809386	1.94E-50	-1.69E-46
MS.gene050868	MS.gene065465	-0.817755	2.80E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065465.t1	MTR_7g082760	97.600	125	3	0	1	125	2	126	6.16e-87	249
MS.gene065465.t1	MTR_7g082750	50.370	135	48	5	4	125	1	129	7.64e-36	119
MS.gene065465.t1	MTR_7g082740	52.756	127	45	4	14	125	4	130	6.06e-34	115
MS.gene065465.t1	MTR_7g082700	52.756	127	45	4	14	125	4	130	1.30e-33	114
MS.gene065465.t1	MTR_7g082730	55.200	125	41	5	15	125	5	128	4.50e-33	112

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 36 sgRNAs with CRISPR-Local

Find 35 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCAACGAGGTACTTACGG+AGG	0.715584	7.3:-25106258	MS.gene065465:CDS
ACGATCCTTAGTTCCAAAGA+TGG	0.563624	7.3:+25106039	None:intergenic
ACTTATATTTGAGATTTCTA+AGG	0.310038	7.3:-25105972	MS.gene065465:CDS
AGAAGGATTAAACTATTTCA+TGG	0.325765	7.3:+25105922	None:intergenic
AGCTTTGTCCACATCTTTAT+TGG	0.171024	7.3:+25106109	None:intergenic
AGGTTCTAAGGTTGAGAAGA+AGG	0.473602	7.3:-25106180	MS.gene065465:CDS
AGTAGTTCCAAGGTTAACAT+GGG	0.641526	7.3:-25106143	MS.gene065465:CDS
ATGAAAAGTGATACCATCTT+TGG	0.337936	7.3:-25106052	MS.gene065465:CDS
ATGCCATCACCGGTGATGGA+AGG	0.564522	7.3:-25106210	MS.gene065465:CDS
ATTTGAGATTTCTAAGGCCT+TGG	0.387808	7.3:-25105966	MS.gene065465:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGAAAAGTGATACCATCTT+TGG	-	chr7.3:25106174-25106193	MS.gene065465:CDS	30.0%
AGTAGTTCCAAGGTTAACAT+GGG	-	chr7.3:25106083-25106102	MS.gene065465:CDS	35.0%
TAAGGATCGTGTAGTTTCTA+AGG	-	chr7.3:25106200-25106219	MS.gene065465:CDS	35.0%
TAATTCATGAGAAGCAACCA+AGG	+	chr7.3:25106280-25106299	None:intergenic	35.0%
TTAGGTCACCAATAAAGATG+TGG	-	chr7.3:25106109-25106128	MS.gene065465:CDS	35.0%
ACGATCCTTAGTTCCAAAGA+TGG	+	chr7.3:25106190-25106209	None:intergenic	40.0%
CTAATAGCCCATGTTAACCT+TGG	+	chr7.3:25106093-25106112	None:intergenic	40.0%
GAGTAGTTCCAAGGTTAACA+TGG	-	chr7.3:25106082-25106101	MS.gene065465:CDS	40.0%
TCTTCTCAACCTTAGAACCT+TGG	+	chr7.3:25106046-25106065	None:intergenic	40.0%
GAAGGAAGACCAAGGTTCTA+AGG	-	chr7.3:25106034-25106053	MS.gene065465:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	25105934	25106314	25105934	ID=MS.gene065465
chr7.3	mRNA	25105934	25106314	25105934	ID=MS.gene065465.t1;Parent=MS.gene065465
chr7.3	exon	25105934	25106314	25105934	ID=MS.gene065465.t1.exon1;Parent=MS.gene065465.t1
chr7.3	CDS	25105934	25106314	25105934	ID=cds.MS.gene065465.t1;Parent=MS.gene065465.t1

Gene Sequence

>MS.gene065465

ATGAAAAGCGTGGAAATGGAGTCACTGATACCCAAACCAACGAGGTACTTACGGAGGCGGCGATATCAGCGACTCGACGAGGATGCCATCACCGGTGATGGAAGGAAGACCAAGGTTCTAAGGTTGAGAAGAAGGCAGTGGAGGATAAGAGTAGTTCCAAGGTTAACATGGGCTATTAGGTCACCAATAAAGATGTGGACAAAGCTTAAGAACACTTATGAGAAATTTATGTTGAAGTCCATGAAAAGTGATACCATCTTTGGAACTAAGGATCGTGTAGTTTCTAAGGAAAATTATTCTCGTGATGCTTTTGAGGCTAGACTTATATTTGAGATTTCTAAGGCCTTGGTTGCTTCTCATGAATTAAATTCCATGAAATAG

Protein sequence

>MS.gene065465.t1

MKSVEMESLIPKPTRYLRRRRYQRLDEDAITGDGRKTKVLRLRRRQWRIRVVPRLTWAIRSPIKMWTKLKNTYEKFMLKSMKSDTIFGTKDRVVSKENYSRDAFEARLIFEISKALVASHELNSMK