Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49181.t1 | RHN81724.1 | 98.3 | 297 | 5 | 0 | 1 | 297 | 1 | 297 | 6.90E-171 | 609.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49181.t1 | P23472 | 67.7 | 300 | 93 | 3 | 1 | 297 | 1 | 299 | 2.8e-120 | 433.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49181.t1 | G7IDV3 | 98.3 | 297 | 5 | 0 | 1 | 297 | 1 | 297 | 5.0e-171 | 609.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene49181 | -0.847157 | 1.38E-59 | -1.69E-46 |
| MS.gene049217 | MS.gene49181 | -0.830246 | 3.27E-55 | -1.69E-46 |
| MS.gene049222 | MS.gene49181 | -0.845676 | 3.50E-59 | -1.69E-46 |
| MS.gene049232 | MS.gene49181 | -0.829594 | 4.72E-55 | -1.69E-46 |
| MS.gene049259 | MS.gene49181 | 0.830005 | 3.75E-55 | -1.69E-46 |
| MS.gene049281 | MS.gene49181 | 0.838316 | 3.09E-57 | -1.69E-46 |
| MS.gene049285 | MS.gene49181 | -0.826325 | 2.89E-54 | -1.69E-46 |
| MS.gene049312 | MS.gene49181 | 0.812444 | 4.23E-51 | -1.69E-46 |
| MS.gene049320 | MS.gene49181 | -0.829658 | 4.55E-55 | -1.69E-46 |
| MS.gene049483 | MS.gene49181 | 0.810287 | 1.24E-50 | -1.69E-46 |
| MS.gene049609 | MS.gene49181 | -0.801112 | 1.05E-48 | -1.69E-46 |
| MS.gene049611 | MS.gene49181 | 0.845011 | 5.30E-59 | -1.69E-46 |
| MS.gene049627 | MS.gene49181 | -0.807301 | 5.40E-50 | -1.69E-46 |
| MS.gene049633 | MS.gene49181 | -0.822822 | 1.93E-53 | -1.69E-46 |
| MS.gene049634 | MS.gene49181 | 0.831404 | 1.70E-55 | -1.69E-46 |
| MS.gene05010 | MS.gene49181 | -0.827222 | 1.76E-54 | -1.69E-46 |
| MS.gene050129 | MS.gene49181 | 0.836872 | 7.25E-57 | -1.69E-46 |
| MS.gene050163 | MS.gene49181 | -0.82367 | 1.22E-53 | -1.69E-46 |
| MS.gene050165 | MS.gene49181 | -0.818074 | 2.37E-52 | -1.69E-46 |
| MS.gene050170 | MS.gene49181 | -0.824533 | 7.67E-54 | -1.69E-46 |
| MS.gene050216 | MS.gene49181 | -0.817805 | 2.73E-52 | -1.69E-46 |
| MS.gene050323 | MS.gene49181 | -0.834416 | 3.04E-56 | -1.69E-46 |
| MS.gene050363 | MS.gene49181 | 0.814097 | 1.83E-51 | -1.69E-46 |
| MS.gene050380 | MS.gene49181 | 0.85342 | 2.42E-61 | -1.69E-46 |
| MS.gene050381 | MS.gene49181 | 0.910125 | 2.66E-82 | -1.69E-46 |
| MS.gene050496 | MS.gene49181 | -0.824561 | 7.55E-54 | -1.69E-46 |
| MS.gene050504 | MS.gene49181 | -0.876679 | 1.15E-68 | -1.69E-46 |
| MS.gene050518 | MS.gene49181 | -0.819512 | 1.12E-52 | -1.69E-46 |
| MS.gene050538 | MS.gene49181 | -0.809366 | 1.96E-50 | -1.69E-46 |
| MS.gene050577 | MS.gene49181 | -0.823247 | 1.54E-53 | -1.69E-46 |
| MS.gene050612 | MS.gene49181 | -0.851197 | 1.04E-60 | -1.69E-46 |
| MS.gene050647 | MS.gene49181 | 0.81436 | 1.60E-51 | -1.69E-46 |
| MS.gene050675 | MS.gene49181 | -0.843966 | 1.01E-58 | -1.69E-46 |
| MS.gene050699 | MS.gene49181 | -0.813647 | 2.30E-51 | -1.69E-46 |
| MS.gene050747 | MS.gene49181 | -0.817622 | 3.00E-52 | -1.69E-46 |
| MS.gene050772 | MS.gene49181 | -0.806138 | 9.52E-50 | -1.69E-46 |
| MS.gene050809 | MS.gene49181 | 0.807066 | 6.06E-50 | -1.69E-46 |
| MS.gene05080 | MS.gene49181 | -0.839099 | 1.94E-57 | -1.69E-46 |
| MS.gene050868 | MS.gene49181 | -0.871594 | 6.07E-67 | -1.69E-46 |
| MS.gene050871 | MS.gene49181 | -0.87374 | 1.16E-67 | -1.69E-46 |
| MS.gene050883 | MS.gene49181 | 0.877844 | 4.54E-69 | -1.69E-46 |
| MS.gene050950 | MS.gene49181 | -0.812537 | 4.03E-51 | -1.69E-46 |
| MS.gene050986 | MS.gene49181 | -0.841491 | 4.60E-58 | -1.69E-46 |
| MS.gene051044 | MS.gene49181 | 0.856606 | 2.87E-62 | -1.69E-46 |
| MS.gene05104 | MS.gene49181 | 0.852664 | 3.98E-61 | -1.69E-46 |
| MS.gene051127 | MS.gene49181 | 0.877029 | 8.72E-69 | -1.69E-46 |
| MS.gene051138 | MS.gene49181 | 0.847651 | 1.01E-59 | -1.69E-46 |
| MS.gene051268 | MS.gene49181 | -0.83003 | 3.69E-55 | -1.69E-46 |
| MS.gene051364 | MS.gene49181 | 0.83798 | 3.77E-57 | -1.69E-46 |
| MS.gene051366 | MS.gene49181 | 0.8222 | 2.69E-53 | -1.69E-46 |
| MS.gene05141 | MS.gene49181 | 0.854174 | 1.47E-61 | -1.69E-46 |
| MS.gene051632 | MS.gene49181 | 0.821621 | 3.66E-53 | -1.69E-46 |
| MS.gene051694 | MS.gene49181 | -0.826183 | 3.12E-54 | -1.69E-46 |
| MS.gene051858 | MS.gene49181 | -0.800891 | 1.17E-48 | -1.69E-46 |
| MS.gene051863 | MS.gene49181 | 0.80484 | 1.78E-49 | -1.69E-46 |
| MS.gene051874 | MS.gene49181 | -0.803891 | 2.81E-49 | -1.69E-46 |
| MS.gene051946 | MS.gene49181 | 0.89089 | 6.54E-74 | -1.69E-46 |
| MS.gene051973 | MS.gene49181 | 0.804132 | 2.50E-49 | -1.69E-46 |
| MS.gene052164 | MS.gene49181 | -0.868094 | 8.43E-66 | -1.69E-46 |
| MS.gene052211 | MS.gene49181 | 0.814617 | 1.41E-51 | -1.69E-46 |
| MS.gene052329 | MS.gene49181 | 0.806268 | 8.93E-50 | -1.69E-46 |
| MS.gene05234 | MS.gene49181 | 0.843909 | 1.05E-58 | -1.69E-46 |
| MS.gene05240 | MS.gene49181 | 0.809042 | 2.30E-50 | -1.69E-46 |
| MS.gene052482 | MS.gene49181 | -0.827943 | 1.18E-54 | -1.69E-46 |
| MS.gene052486 | MS.gene49181 | -0.838501 | 2.77E-57 | -1.69E-46 |
| MS.gene052503 | MS.gene49181 | -0.812694 | 3.73E-51 | -1.69E-46 |
| MS.gene052566 | MS.gene49181 | 0.807768 | 4.30E-50 | -1.69E-46 |
| MS.gene052802 | MS.gene49181 | 0.832613 | 8.55E-56 | -1.69E-46 |
| MS.gene052823 | MS.gene49181 | -0.811758 | 5.97E-51 | -1.69E-46 |
| MS.gene052825 | MS.gene49181 | -0.809901 | 1.50E-50 | -1.69E-46 |
| MS.gene052966 | MS.gene49181 | -0.865082 | 7.64E-65 | -1.69E-46 |
| MS.gene053203 | MS.gene49181 | -0.866314 | 3.12E-65 | -1.69E-46 |
| MS.gene053213 | MS.gene49181 | -0.809607 | 1.74E-50 | -1.69E-46 |
| MS.gene053286 | MS.gene49181 | -0.80738 | 5.20E-50 | -1.69E-46 |
| MS.gene053406 | MS.gene49181 | 0.804009 | 2.65E-49 | -1.69E-46 |
| MS.gene053420 | MS.gene49181 | 0.872769 | 2.47E-67 | -1.69E-46 |
| MS.gene053421 | MS.gene49181 | 0.814268 | 1.68E-51 | -1.69E-46 |
| MS.gene053436 | MS.gene49181 | -0.812128 | 4.96E-51 | -1.69E-46 |
| MS.gene053488 | MS.gene49181 | 0.824833 | 6.52E-54 | -1.69E-46 |
| MS.gene053549 | MS.gene49181 | 0.838254 | 3.21E-57 | -1.69E-46 |
| MS.gene053561 | MS.gene49181 | 0.861144 | 1.26E-63 | -1.69E-46 |
| MS.gene053574 | MS.gene49181 | -0.825269 | 5.14E-54 | -1.69E-46 |
| MS.gene053626 | MS.gene49181 | -0.807022 | 6.19E-50 | -1.69E-46 |
| MS.gene053632 | MS.gene49181 | -0.802128 | 6.50E-49 | -1.69E-46 |
| MS.gene053824 | MS.gene49181 | -0.808032 | 3.78E-50 | -1.69E-46 |
| MS.gene053887 | MS.gene49181 | 0.805931 | 1.05E-49 | -1.69E-46 |
| MS.gene054003 | MS.gene49181 | -0.816695 | 4.84E-52 | -1.69E-46 |
| MS.gene054054 | MS.gene49181 | 0.813712 | 2.23E-51 | -1.69E-46 |
| MS.gene054056 | MS.gene49181 | 0.831485 | 1.63E-55 | -1.69E-46 |
| MS.gene054595 | MS.gene49181 | -0.838448 | 2.86E-57 | -1.69E-46 |
| MS.gene054616 | MS.gene49181 | 0.826644 | 2.42E-54 | -1.69E-46 |
| MS.gene054642 | MS.gene49181 | -0.82126 | 4.44E-53 | -1.69E-46 |
| MS.gene054706 | MS.gene49181 | 0.859113 | 5.18E-63 | -1.69E-46 |
| MS.gene054707 | MS.gene49181 | 0.818435 | 1.96E-52 | -1.69E-46 |
| MS.gene054708 | MS.gene49181 | 0.854429 | 1.24E-61 | -1.69E-46 |
| MS.gene05470 | MS.gene49181 | -0.834277 | 3.29E-56 | -1.69E-46 |
| MS.gene054954 | MS.gene49181 | -0.833334 | 5.66E-56 | -1.69E-46 |
| MS.gene054959 | MS.gene49181 | 0.8283 | 9.71E-55 | -1.69E-46 |
| MS.gene055124 | MS.gene49181 | 0.868227 | 7.64E-66 | -1.69E-46 |
| MS.gene055139 | MS.gene49181 | 0.836056 | 1.17E-56 | -1.69E-46 |
| MS.gene055154 | MS.gene49181 | 0.872752 | 2.50E-67 | -1.69E-46 |
| MS.gene055202 | MS.gene49181 | 0.87173 | 5.47E-67 | -1.69E-46 |
| MS.gene055362 | MS.gene49181 | -0.836593 | 8.54E-57 | -1.69E-46 |
| MS.gene055502 | MS.gene49181 | -0.863767 | 1.97E-64 | -1.69E-46 |
| MS.gene055577 | MS.gene49181 | -0.877416 | 6.40E-69 | -1.69E-46 |
| MS.gene055748 | MS.gene49181 | -0.819392 | 1.19E-52 | -1.69E-46 |
| MS.gene055750 | MS.gene49181 | -0.822927 | 1.82E-53 | -1.69E-46 |
| MS.gene055751 | MS.gene49181 | -0.820361 | 7.14E-53 | -1.69E-46 |
| MS.gene05589 | MS.gene49181 | -0.851886 | 6.63E-61 | -1.69E-46 |
| MS.gene055941 | MS.gene49181 | -0.808208 | 3.47E-50 | -1.69E-46 |
| MS.gene055942 | MS.gene49181 | 0.810939 | 8.98E-51 | -1.69E-46 |
| MS.gene056166 | MS.gene49181 | -0.811927 | 5.48E-51 | -1.69E-46 |
| MS.gene056218 | MS.gene49181 | 0.80214 | 6.46E-49 | -1.69E-46 |
| MS.gene056224 | MS.gene49181 | 0.827103 | 1.88E-54 | -1.69E-46 |
| MS.gene056310 | MS.gene49181 | 0.883289 | 5.09E-71 | -1.69E-46 |
| MS.gene056311 | MS.gene49181 | 0.880785 | 4.12E-70 | -1.69E-46 |
| MS.gene056313 | MS.gene49181 | 0.888079 | 8.11E-73 | -1.69E-46 |
| MS.gene056408 | MS.gene49181 | 0.814957 | 1.18E-51 | -1.69E-46 |
| MS.gene056504 | MS.gene49181 | -0.856278 | 3.58E-62 | -1.69E-46 |
| MS.gene056510 | MS.gene49181 | -0.838788 | 2.34E-57 | -1.69E-46 |
| MS.gene056550 | MS.gene49181 | 0.849973 | 2.29E-60 | -1.69E-46 |
| MS.gene056647 | MS.gene49181 | 0.811183 | 7.95E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene49181 | -0.817769 | 2.78E-52 | -1.69E-46 |
| MS.gene056692 | MS.gene49181 | -0.813059 | 3.10E-51 | -1.69E-46 |
| MS.gene056856 | MS.gene49181 | 0.833323 | 5.70E-56 | -1.69E-46 |
| MS.gene056988 | MS.gene49181 | 0.806558 | 7.76E-50 | -1.69E-46 |
| MS.gene057014 | MS.gene49181 | 0.878035 | 3.89E-69 | -1.69E-46 |
| MS.gene057086 | MS.gene49181 | -0.811372 | 7.24E-51 | -1.69E-46 |
| MS.gene057291 | MS.gene49181 | 0.801621 | 8.26E-49 | -1.69E-46 |
| MS.gene057473 | MS.gene49181 | 0.82106 | 4.94E-53 | -1.69E-46 |
| MS.gene057506 | MS.gene49181 | 0.806544 | 7.81E-50 | -1.69E-46 |
| MS.gene057658 | MS.gene49181 | -0.802313 | 5.95E-49 | -1.69E-46 |
| MS.gene057768 | MS.gene49181 | 0.802729 | 4.89E-49 | -1.69E-46 |
| MS.gene057831 | MS.gene49181 | -0.803114 | 4.07E-49 | -1.69E-46 |
| MS.gene058068 | MS.gene49181 | 0.822702 | 2.06E-53 | -1.69E-46 |
| MS.gene058093 | MS.gene49181 | 0.833964 | 3.94E-56 | -1.69E-46 |
| MS.gene058099 | MS.gene49181 | 0.868976 | 4.37E-66 | -1.69E-46 |
| MS.gene058108 | MS.gene49181 | 0.805776 | 1.13E-49 | -1.69E-46 |
| MS.gene058109 | MS.gene49181 | 0.847027 | 1.50E-59 | -1.69E-46 |
| MS.gene058111 | MS.gene49181 | 0.833549 | 5.00E-56 | -1.69E-46 |
| MS.gene058117 | MS.gene49181 | 0.817144 | 3.84E-52 | -1.69E-46 |
| MS.gene058157 | MS.gene49181 | -0.840828 | 6.87E-58 | -1.69E-46 |
| MS.gene058170 | MS.gene49181 | 0.81676 | 4.68E-52 | -1.69E-46 |
| MS.gene058171 | MS.gene49181 | 0.872783 | 2.44E-67 | -1.69E-46 |
| MS.gene058173 | MS.gene49181 | 0.86033 | 2.23E-63 | -1.69E-46 |
| MS.gene058174 | MS.gene49181 | 0.819017 | 1.45E-52 | -1.69E-46 |
| MS.gene058175 | MS.gene49181 | 0.872685 | 2.63E-67 | -1.69E-46 |
| MS.gene058180 | MS.gene49181 | 0.800315 | 1.53E-48 | -1.69E-46 |
| MS.gene058268 | MS.gene49181 | 0.837688 | 4.48E-57 | -1.69E-46 |
| MS.gene058269 | MS.gene49181 | 0.838476 | 2.81E-57 | -1.69E-46 |
| MS.gene058334 | MS.gene49181 | 0.823336 | 1.46E-53 | -1.69E-46 |
| MS.gene058338 | MS.gene49181 | -0.809658 | 1.70E-50 | -1.69E-46 |
| MS.gene05837 | MS.gene49181 | -0.856676 | 2.74E-62 | -1.69E-46 |
| MS.gene058419 | MS.gene49181 | -0.81902 | 1.45E-52 | -1.69E-46 |
| MS.gene058493 | MS.gene49181 | 0.821532 | 3.84E-53 | -1.69E-46 |
| MS.gene058544 | MS.gene49181 | -0.839246 | 1.78E-57 | -1.69E-46 |
| MS.gene058603 | MS.gene49181 | 0.83737 | 5.41E-57 | -1.69E-46 |
| MS.gene058629 | MS.gene49181 | 0.803288 | 3.75E-49 | -1.69E-46 |
| MS.gene058773 | MS.gene49181 | -0.833498 | 5.15E-56 | -1.69E-46 |
| MS.gene058838 | MS.gene49181 | -0.825471 | 4.60E-54 | -1.69E-46 |
| MS.gene05883 | MS.gene49181 | -0.805637 | 1.21E-49 | -1.69E-46 |
| MS.gene058840 | MS.gene49181 | 0.82209 | 2.85E-53 | -1.69E-46 |
| MS.gene058978 | MS.gene49181 | 0.820095 | 8.22E-53 | -1.69E-46 |
| MS.gene059022 | MS.gene49181 | -0.861587 | 9.24E-64 | -1.69E-46 |
| MS.gene059023 | MS.gene49181 | -0.836155 | 1.10E-56 | -1.69E-46 |
| MS.gene059037 | MS.gene49181 | 0.831087 | 2.04E-55 | -1.69E-46 |
| MS.gene059045 | MS.gene49181 | 0.853865 | 1.80E-61 | -1.69E-46 |
| MS.gene059223 | MS.gene49181 | 0.845517 | 3.87E-59 | -1.69E-46 |
| MS.gene059367 | MS.gene49181 | -0.840431 | 8.73E-58 | -1.69E-46 |
| MS.gene059677 | MS.gene49181 | -0.829116 | 6.16E-55 | -1.69E-46 |
| MS.gene059690 | MS.gene49181 | 0.841331 | 5.07E-58 | -1.69E-46 |
| MS.gene059691 | MS.gene49181 | 0.838636 | 2.56E-57 | -1.69E-46 |
| MS.gene059694 | MS.gene49181 | 0.852671 | 3.96E-61 | -1.69E-46 |
| MS.gene059697 | MS.gene49181 | 0.859817 | 3.18E-63 | -1.69E-46 |
| MS.gene059703 | MS.gene49181 | 0.804677 | 1.93E-49 | -1.69E-46 |
| MS.gene059718 | MS.gene49181 | -0.847381 | 1.20E-59 | -1.69E-46 |
| MS.gene059756 | MS.gene49181 | -0.801127 | 1.04E-48 | -1.69E-46 |
| MS.gene059801 | MS.gene49181 | -0.806628 | 7.50E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene49181 | -0.864753 | 9.69E-65 | -1.69E-46 |
| MS.gene059902 | MS.gene49181 | -0.80119 | 1.01E-48 | -1.69E-46 |
| MS.gene059916 | MS.gene49181 | 0.846998 | 1.53E-59 | -1.69E-46 |
| MS.gene059943 | MS.gene49181 | 0.816783 | 4.63E-52 | -1.69E-46 |
| MS.gene059944 | MS.gene49181 | 0.825842 | 3.76E-54 | -1.69E-46 |
| MS.gene06000 | MS.gene49181 | -0.823125 | 1.64E-53 | -1.69E-46 |
| MS.gene060187 | MS.gene49181 | 0.828309 | 9.66E-55 | -1.69E-46 |
| MS.gene060205 | MS.gene49181 | 0.808001 | 3.84E-50 | -1.69E-46 |
| MS.gene060482 | MS.gene49181 | -0.845488 | 3.94E-59 | -1.69E-46 |
| MS.gene060593 | MS.gene49181 | 0.825109 | 5.61E-54 | -1.69E-46 |
| MS.gene060595 | MS.gene49181 | 0.84387 | 1.07E-58 | -1.69E-46 |
| MS.gene060703 | MS.gene49181 | -0.814665 | 1.37E-51 | -1.69E-46 |
| MS.gene060762 | MS.gene49181 | -0.849862 | 2.46E-60 | -1.69E-46 |
| MS.gene060778 | MS.gene49181 | -0.837296 | 5.65E-57 | -1.69E-46 |
| MS.gene06077 | MS.gene49181 | -0.873762 | 1.14E-67 | -1.69E-46 |
| MS.gene060982 | MS.gene49181 | -0.839944 | 1.17E-57 | -1.69E-46 |
| MS.gene061044 | MS.gene49181 | 0.802721 | 4.90E-49 | -1.69E-46 |
| MS.gene061150 | MS.gene49181 | -0.806178 | 9.33E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49181.t1 | MTR_1g099320 | 98.316 | 297 | 5 | 0 | 1 | 297 | 1 | 297 | 0.0 | 600 |
| MS.gene49181.t1 | MTR_1g099350 | 70.805 | 298 | 79 | 4 | 1 | 297 | 1 | 291 | 1.28e-148 | 418 |
| MS.gene49181.t1 | MTR_0027s0260 | 67.241 | 290 | 89 | 4 | 5 | 293 | 10 | 294 | 1.73e-139 | 395 |
| MS.gene49181.t1 | MTR_8g055940 | 66.096 | 292 | 94 | 3 | 3 | 293 | 6 | 293 | 1.54e-136 | 388 |
| MS.gene49181.t1 | MTR_1g099310 | 64.846 | 293 | 97 | 6 | 7 | 297 | 8 | 296 | 5.96e-134 | 381 |
| MS.gene49181.t1 | MTR_5g043550 | 63.605 | 294 | 102 | 3 | 1 | 293 | 1 | 290 | 9.05e-133 | 378 |
| MS.gene49181.t1 | MTR_1g099290 | 63.509 | 285 | 99 | 5 | 13 | 295 | 15 | 296 | 2.37e-124 | 367 |
| MS.gene49181.t1 | MTR_7g116350 | 61.986 | 292 | 95 | 2 | 7 | 297 | 8 | 284 | 6.09e-124 | 373 |
| MS.gene49181.t1 | MTR_8g467650 | 62.284 | 289 | 105 | 3 | 7 | 293 | 8 | 294 | 6.51e-123 | 353 |
| MS.gene49181.t1 | MTR_2g102020 | 58.000 | 300 | 115 | 5 | 8 | 297 | 15 | 313 | 2.31e-120 | 349 |
| MS.gene49181.t1 | MTR_7g116850 | 57.045 | 291 | 120 | 4 | 11 | 297 | 37 | 326 | 9.92e-114 | 331 |
| MS.gene49181.t1 | MTR_2g040740 | 55.634 | 284 | 118 | 4 | 14 | 293 | 16 | 295 | 9.82e-105 | 308 |
| MS.gene49181.t1 | MTR_2g040830 | 53.333 | 285 | 124 | 5 | 14 | 293 | 16 | 296 | 1.58e-97 | 290 |
| MS.gene49181.t1 | MTR_2g040690 | 52.632 | 285 | 126 | 5 | 14 | 293 | 18 | 298 | 4.29e-97 | 289 |
| MS.gene49181.t1 | MTR_6g023340 | 51.237 | 283 | 129 | 7 | 21 | 297 | 23 | 302 | 3.68e-93 | 278 |
| MS.gene49181.t1 | MTR_2g040650 | 48.772 | 285 | 133 | 6 | 14 | 293 | 16 | 292 | 6.11e-86 | 260 |
| MS.gene49181.t1 | MTR_2g040870 | 50.993 | 151 | 70 | 2 | 16 | 166 | 15 | 161 | 1.00e-40 | 139 |
| MS.gene49181.t1 | MTR_2g040880 | 52.212 | 113 | 49 | 3 | 186 | 293 | 1 | 113 | 2.01e-35 | 125 |
| MS.gene49181.t1 | MTR_2g040890 | 42.683 | 164 | 83 | 6 | 9 | 166 | 8 | 166 | 4.12e-35 | 125 |
| MS.gene49181.t1 | MTR_2g040850 | 44.371 | 151 | 74 | 3 | 2 | 145 | 3 | 150 | 1.16e-30 | 115 |
| MS.gene49181.t1 | MTR_2g040900 | 46.774 | 124 | 60 | 4 | 180 | 297 | 18 | 141 | 7.71e-28 | 106 |
| MS.gene49181.t1 | MTR_4g077310 | 52.809 | 89 | 38 | 4 | 207 | 293 | 3 | 89 | 2.62e-23 | 92.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49181.t1 | AT5G24090 | 64.000 | 300 | 104 | 3 | 1 | 297 | 4 | 302 | 3.18e-143 | 405 |
Find 62 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTGAATTCATGGAATAAA+TGG | 0.244707 | 1.3:+68445508 | MS.gene49181:CDS |
| AACTTGGTTCCACCGAAAAT+TGG | 0.244758 | 1.3:+68445298 | MS.gene49181:CDS |
| CTTAAAGGGTATAGTAGATA+TGG | 0.254089 | 1.3:+68445339 | MS.gene49181:CDS |
| CTTTCTATTGGTGGTGGAAT+TGG | 0.283448 | 1.3:+68445144 | MS.gene49181:CDS |
| TGACCTGCAAGATTCATTTC+AGG | 0.286078 | 1.3:-68445039 | None:intergenic |
| AGGTTCCTTCGTTGCCATTT+TGG | 0.290608 | 1.3:-68444939 | None:intergenic |
| GCAATCTATTGGGGCCAAAA+TGG | 0.300822 | 1.3:+68444925 | MS.gene49181:CDS |
| GGGTATAGCACTTCTATTAT+TGG | 0.304491 | 1.3:+68445705 | MS.gene49181:CDS |
| ATTAAGAAGTCAAGAAAGTA+TGG | 0.318333 | 1.3:+68445642 | MS.gene49181:CDS |
| TAACCAACCTTGTGAATTCA+TGG | 0.337959 | 1.3:+68445499 | MS.gene49181:CDS |
| CTGGTGGCATAGCAATCTAT+TGG | 0.352724 | 1.3:+68444914 | MS.gene49181:CDS |
| ACCCCTGAAATGAATCTTGC+AGG | 0.353414 | 1.3:+68445036 | MS.gene49181:CDS |
| AATCCACCTTGTCAATATAA+TGG | 0.353574 | 1.3:+68445471 | MS.gene49181:CDS |
| GACCGTTACCGAATTTGTTT+AGG | 0.359199 | 1.3:-68445011 | None:intergenic |
| TTGGGCACTGCACTTGAAAC+AGG | 0.362436 | 1.3:+68445414 | MS.gene49181:CDS |
| CCGGCGTCTACGGCGGCGGC+CGG | 0.373512 | 1.3:+68445570 | MS.gene49181:CDS |
| TGGTGGCATAGCAATCTATT+GGG | 0.384033 | 1.3:+68444915 | MS.gene49181:CDS |
| GAAAATTGGCAACACCTTGC+AGG | 0.393402 | 1.3:+68445312 | MS.gene49181:CDS |
| AAACTTTGATTCCTTTACTT+TGG | 0.396936 | 1.3:-68445119 | None:intergenic |
| ATAGCTTTCCTAAACAAATT+CGG | 0.403876 | 1.3:+68445003 | MS.gene49181:CDS |
| TGCCGGAATAAAACCACTTC+CGG | 0.411953 | 1.3:-68445589 | None:intergenic |
| GGTTGCACATGCTTCGGATA+AGG | 0.416487 | 1.3:-68444959 | None:intergenic |
| GCTGCCGGCGTCTACGGCGG+CGG | 0.417348 | 1.3:+68445566 | MS.gene49181:CDS |
| TCTACGGCGGCGGCCGGAAG+TGG | 0.426613 | 1.3:+68445576 | MS.gene49181:CDS |
| AAGTCATCTTCAAGACCATT+AGG | 0.427426 | 1.3:+68445240 | MS.gene49181:CDS |
| TCTAAAACAGCATCACCTAA+TGG | 0.445847 | 1.3:-68445255 | None:intergenic |
| AGGTTTCATGATTTGCAGAC+TGG | 0.456803 | 1.3:+68445684 | MS.gene49181:CDS |
| TTTAGGGCTGCCGGCGTCTA+CGG | 0.464209 | 1.3:+68445560 | MS.gene49181:CDS |
| GTGCATGAATTTGGAAGTGA+TGG | 0.468935 | 1.3:-68445069 | None:intergenic |
| TTATCCGAAGCATGTGCAAC+CGG | 0.472372 | 1.3:+68444961 | MS.gene49181:CDS |
| CTTGTTGCAACTTCCCATGC+TGG | 0.478479 | 1.3:+68444895 | MS.gene49181:CDS |
| AGTATGGAGGAGTGATGCTT+TGG | 0.487463 | 1.3:+68445658 | MS.gene49181:CDS |
| ATCAAAGATTGCCAAAGTAA+AGG | 0.491893 | 1.3:+68445108 | MS.gene49181:CDS |
| GACCTGCAAGATTCATTTCA+GGG | 0.492023 | 1.3:-68445038 | None:intergenic |
| TTTCTTGACTTCTTAATCAC+AGG | 0.493138 | 1.3:-68445636 | None:intergenic |
| ATTCCATGAATTCACAAGGT+TGG | 0.498536 | 1.3:-68445502 | None:intergenic |
| GATTGCTATGCCACCAGCAT+GGG | 0.506152 | 1.3:-68444908 | None:intergenic |
| TCTGAAGTCAACACATCTGC+CGG | 0.541684 | 1.3:-68445606 | None:intergenic |
| CCGGCCGCCGCCGTAGACGC+CGG | 0.543064 | 1.3:-68445570 | None:intergenic |
| TTATCTGGAATTGGACATTG+AGG | 0.543911 | 1.3:-68445387 | None:intergenic |
| CTTCCCTCTTGGAACAGTAC+TGG | 0.543952 | 1.3:-68445532 | None:intergenic |
| GGTTTCATGATTTGCAGACT+GGG | 0.544792 | 1.3:+68445685 | MS.gene49181:CDS |
| GAGGAGTGATGCTTTGGTCA+AGG | 0.544888 | 1.3:+68445664 | MS.gene49181:CDS |
| TTATGGAACACTTTCTTGGG+TGG | 0.560429 | 1.3:+68445216 | MS.gene49181:CDS |
| TTCCTAAACAAATTCGGTAA+CGG | 0.579160 | 1.3:+68445009 | MS.gene49181:CDS |
| AAGAAGTCAAGAAAGTATGG+AGG | 0.582814 | 1.3:+68445645 | MS.gene49181:CDS |
| TGGGGCCAAAATGGCAACGA+AGG | 0.591522 | 1.3:+68444934 | MS.gene49181:CDS |
| AGATTGCTATGCCACCAGCA+TGG | 0.592121 | 1.3:-68444909 | None:intergenic |
| GTTGCAACTTCCCATGCTGG+TGG | 0.594762 | 1.3:+68444898 | MS.gene49181:CDS |
| AGGGCTGCCGGCGTCTACGG+CGG | 0.600947 | 1.3:+68445563 | MS.gene49181:CDS |
| TTAGGAAAGCTATGTTAACA+TGG | 0.604430 | 1.3:-68444993 | None:intergenic |
| ACCTGCAAGATTCATTTCAG+GGG | 0.605659 | 1.3:-68445037 | None:intergenic |
| ATTTATTCCATGAATTCACA+AGG | 0.612674 | 1.3:-68445506 | None:intergenic |
| TTGCCATTATATTGACAAGG+TGG | 0.613084 | 1.3:-68445474 | None:intergenic |
| ACCCTTTAAGAAAACCTGCA+AGG | 0.616480 | 1.3:-68445326 | None:intergenic |
| ATGTTGCCATTATATTGACA+AGG | 0.624746 | 1.3:-68445477 | None:intergenic |
| TAGGAAAGCTATGTTAACAT+GGG | 0.626283 | 1.3:-68444992 | None:intergenic |
| TGCATGAATTTGGAAGTGAT+GGG | 0.638112 | 1.3:-68445068 | None:intergenic |
| GGGAAGTTGCAACAAGAGTG+AGG | 0.646970 | 1.3:-68444888 | None:intergenic |
| GGTGGCATAGCAATCTATTG+GGG | 0.654630 | 1.3:+68444916 | MS.gene49181:CDS |
| GGACCAGTACTGTTCCAAGA+GGG | 0.670941 | 1.3:+68445529 | MS.gene49181:CDS |
| TGGACCAGTACTGTTCCAAG+AGG | 0.699480 | 1.3:+68445528 | MS.gene49181:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGATTTTGATATTGAACT+TGG | + | chr1.3:68445282-68445301 | MS.gene49181:CDS | 20.0% |
| !!! | ATCAAAGTTTTACTTTCTAT+TGG | + | chr1.3:68445132-68445151 | MS.gene49181:CDS | 20.0% |
| !!! | GAAACGTTTCAAAATTTTTA+TGG | + | chr1.3:68445199-68445218 | MS.gene49181:CDS | 20.0% |
| ! | AAACTTTGATTCCTTTACTT+TGG | - | chr1.3:68445122-68445141 | None:intergenic | 25.0% |
| ! | ATAGCTTTCCTAAACAAATT+CGG | + | chr1.3:68445003-68445022 | MS.gene49181:CDS | 25.0% |
| ! | ATTAAGAAGTCAAGAAAGTA+TGG | + | chr1.3:68445642-68445661 | MS.gene49181:CDS | 25.0% |
| ! | ATTTATTCCATGAATTCACA+AGG | - | chr1.3:68445509-68445528 | None:intergenic | 25.0% |
| ! | GTATAGTAGATATGGAAAAA+AGG | + | chr1.3:68445347-68445366 | MS.gene49181:CDS | 25.0% |
| ! | TTGTGAATTCATGGAATAAA+TGG | + | chr1.3:68445508-68445527 | MS.gene49181:CDS | 25.0% |
| !! | AAAGTTTTACTTTCTATTGG+TGG | + | chr1.3:68445135-68445154 | MS.gene49181:CDS | 25.0% |
| !! | ATTTTTATGGAACACTTTCT+TGG | + | chr1.3:68445212-68445231 | MS.gene49181:CDS | 25.0% |
| !! | CCAATTCCAGATAAATTTTT+GGG | + | chr1.3:68445396-68445415 | MS.gene49181:CDS | 25.0% |
| !! | TCCAATTCCAGATAAATTTT+TGG | + | chr1.3:68445395-68445414 | MS.gene49181:CDS | 25.0% |
| !! | TTTTTATGGAACACTTTCTT+GGG | + | chr1.3:68445213-68445232 | MS.gene49181:CDS | 25.0% |
| AATCCACCTTGTCAATATAA+TGG | + | chr1.3:68445471-68445490 | MS.gene49181:CDS | 30.0% | |
| ATCAAAGATTGCCAAAGTAA+AGG | + | chr1.3:68445108-68445127 | MS.gene49181:CDS | 30.0% | |
| ATGTTGCCATTATATTGACA+AGG | - | chr1.3:68445480-68445499 | None:intergenic | 30.0% | |
| TAGGAAAGCTATGTTAACAT+GGG | - | chr1.3:68444995-68445014 | None:intergenic | 30.0% | |
| TTAGGAAAGCTATGTTAACA+TGG | - | chr1.3:68444996-68445015 | None:intergenic | 30.0% | |
| TTCCTAAACAAATTCGGTAA+CGG | + | chr1.3:68445009-68445028 | MS.gene49181:CDS | 30.0% | |
| TTTCTTGACTTCTTAATCAC+AGG | - | chr1.3:68445639-68445658 | None:intergenic | 30.0% | |
| ! | CCCAAAAATTTATCTGGAAT+TGG | - | chr1.3:68445399-68445418 | None:intergenic | 30.0% |
| ! | CTGAATTTTGTGCATGAATT+TGG | - | chr1.3:68445081-68445100 | None:intergenic | 30.0% |
| ! | CTTAAAGGGTATAGTAGATA+TGG | + | chr1.3:68445339-68445358 | MS.gene49181:CDS | 30.0% |
| ! | TATGGAAAAAAGGTGTATCT+TGG | + | chr1.3:68445357-68445376 | MS.gene49181:CDS | 30.0% |
| !!! | AGGTCTTTTTGACTTTGTTT+GGG | + | chr1.3:68445434-68445453 | MS.gene49181:CDS | 30.0% |
| !!! | CAAGAGGGAAGTTATTTTTA+GGG | + | chr1.3:68445544-68445563 | MS.gene49181:CDS | 30.0% |
| AAGTCATCTTCAAGACCATT+AGG | + | chr1.3:68445240-68445259 | MS.gene49181:CDS | 35.0% | |
| ATTCCATGAATTCACAAGGT+TGG | - | chr1.3:68445505-68445524 | None:intergenic | 35.0% | |
| CCTAAAAATAACTTCCCTCT+TGG | - | chr1.3:68445546-68445565 | None:intergenic | 35.0% | |
| GGGTATAGCACTTCTATTAT+TGG | + | chr1.3:68445705-68445724 | MS.gene49181:CDS | 35.0% | |
| TAACCAACCTTGTGAATTCA+TGG | + | chr1.3:68445499-68445518 | MS.gene49181:CDS | 35.0% | |
| TGCATGAATTTGGAAGTGAT+GGG | - | chr1.3:68445071-68445090 | None:intergenic | 35.0% | |
| TTGCCATTATATTGACAAGG+TGG | - | chr1.3:68445477-68445496 | None:intergenic | 35.0% | |
| ! | AAGAAGTCAAGAAAGTATGG+AGG | + | chr1.3:68445645-68445664 | MS.gene49181:CDS | 35.0% |
| ! | ACCTTGCAGGTTTTCTTAAA+GGG | + | chr1.3:68445325-68445344 | MS.gene49181:CDS | 35.0% |
| ! | GTTTTACTTTCTATTGGTGG+TGG | + | chr1.3:68445138-68445157 | MS.gene49181:CDS | 35.0% |
| ! | TCTAAAACAGCATCACCTAA+TGG | - | chr1.3:68445258-68445277 | None:intergenic | 35.0% |
| ! | TTATCTGGAATTGGACATTG+AGG | - | chr1.3:68445390-68445409 | None:intergenic | 35.0% |
| !!! | CAGGTCTTTTTGACTTTGTT+TGG | + | chr1.3:68445433-68445452 | MS.gene49181:CDS | 35.0% |
| !!! | CCAAGAGGGAAGTTATTTTT+AGG | + | chr1.3:68445543-68445562 | MS.gene49181:CDS | 35.0% |
| !!! | GTTAACATGGGAGTATTTTC+CGG | - | chr1.3:68444983-68445002 | None:intergenic | 35.0% |
| !!! | TTAGGTGATGCTGTTTTAGA+TGG | + | chr1.3:68445258-68445277 | MS.gene49181:CDS | 35.0% |
| AACTTGGTTCCACCGAAAAT+TGG | + | chr1.3:68445298-68445317 | MS.gene49181:CDS | 40.0% | |
| ACCTGCAAGATTCATTTCAG+GGG | - | chr1.3:68445040-68445059 | None:intergenic | 40.0% | |
| GACCTGCAAGATTCATTTCA+GGG | - | chr1.3:68445041-68445060 | None:intergenic | 40.0% | |
| GCAGTGCCCAAAAATTTATC+TGG | - | chr1.3:68445405-68445424 | None:intergenic | 40.0% | |
| GTGCATGAATTTGGAAGTGA+TGG | - | chr1.3:68445072-68445091 | None:intergenic | 40.0% | |
| TGACCTGCAAGATTCATTTC+AGG | - | chr1.3:68445042-68445061 | None:intergenic | 40.0% | |
| TGGTGGCATAGCAATCTATT+GGG | + | chr1.3:68444915-68444934 | MS.gene49181:CDS | 40.0% | |
| TTATGGAACACTTTCTTGGG+TGG | + | chr1.3:68445216-68445235 | MS.gene49181:CDS | 40.0% | |
| ! | ACCCTTTAAGAAAACCTGCA+AGG | - | chr1.3:68445329-68445348 | None:intergenic | 40.0% |
| ! | AGGTTTCATGATTTGCAGAC+TGG | + | chr1.3:68445684-68445703 | MS.gene49181:CDS | 40.0% |
| ! | CACCTTGCAGGTTTTCTTAA+AGG | + | chr1.3:68445324-68445343 | MS.gene49181:CDS | 40.0% |
| ! | GACCGTTACCGAATTTGTTT+AGG | - | chr1.3:68445014-68445033 | None:intergenic | 40.0% |
| ! | GGTTTCATGATTTGCAGACT+GGG | + | chr1.3:68445685-68445704 | MS.gene49181:CDS | 40.0% |
| !! | CTTTCTATTGGTGGTGGAAT+TGG | + | chr1.3:68445144-68445163 | MS.gene49181:CDS | 40.0% |
| !!! | GAAGTTATTTTTAGGGCTGC+CGG | + | chr1.3:68445551-68445570 | MS.gene49181:CDS | 40.0% |
| !!! | TGCAAGGTGTTGCCAATTTT+CGG | - | chr1.3:68445313-68445332 | None:intergenic | 40.0% |
| ACCCCTGAAATGAATCTTGC+AGG | + | chr1.3:68445036-68445055 | MS.gene49181:CDS | 45.0% | |
| AGTATGGAGGAGTGATGCTT+TGG | + | chr1.3:68445658-68445677 | MS.gene49181:CDS | 45.0% | |
| CTGGTGGCATAGCAATCTAT+TGG | + | chr1.3:68444914-68444933 | MS.gene49181:CDS | 45.0% | |
| GAAAATTGGCAACACCTTGC+AGG | + | chr1.3:68445312-68445331 | MS.gene49181:CDS | 45.0% | |
| GCAATCTATTGGGGCCAAAA+TGG | + | chr1.3:68444925-68444944 | MS.gene49181:CDS | 45.0% | |
| GGTGGCATAGCAATCTATTG+GGG | + | chr1.3:68444916-68444935 | MS.gene49181:CDS | 45.0% | |
| TGCCGGAATAAAACCACTTC+CGG | - | chr1.3:68445592-68445611 | None:intergenic | 45.0% | |
| TTATCCGAAGCATGTGCAAC+CGG | + | chr1.3:68444961-68444980 | MS.gene49181:CDS | 45.0% | |
| ! | TCTGAAGTCAACACATCTGC+CGG | - | chr1.3:68445609-68445628 | None:intergenic | 45.0% |
| ! | TTTTCCGGTTGCACATGCTT+CGG | - | chr1.3:68444968-68444987 | None:intergenic | 45.0% |
| !! | AGGTTCCTTCGTTGCCATTT+TGG | - | chr1.3:68444942-68444961 | None:intergenic | 45.0% |
| !!! | AAGGTGTTGCCAATTTTCGG+TGG | - | chr1.3:68445310-68445329 | None:intergenic | 45.0% |
| AGATTGCTATGCCACCAGCA+TGG | - | chr1.3:68444912-68444931 | None:intergenic | 50.0% | |
| CTTCCCTCTTGGAACAGTAC+TGG | - | chr1.3:68445535-68445554 | None:intergenic | 50.0% | |
| CTTGTTGCAACTTCCCATGC+TGG | + | chr1.3:68444895-68444914 | MS.gene49181:CDS | 50.0% | |
| GAGGAGTGATGCTTTGGTCA+AGG | + | chr1.3:68445664-68445683 | MS.gene49181:CDS | 50.0% | |
| GATTGCTATGCCACCAGCAT+GGG | - | chr1.3:68444911-68444930 | None:intergenic | 50.0% | |
| GGACCAGTACTGTTCCAAGA+GGG | + | chr1.3:68445529-68445548 | MS.gene49181:CDS | 50.0% | |
| GGGAAGTTGCAACAAGAGTG+AGG | - | chr1.3:68444891-68444910 | None:intergenic | 50.0% | |
| GGTTGCACATGCTTCGGATA+AGG | - | chr1.3:68444962-68444981 | None:intergenic | 50.0% | |
| TGGACCAGTACTGTTCCAAG+AGG | + | chr1.3:68445528-68445547 | MS.gene49181:CDS | 50.0% | |
| ! | TTGGGCACTGCACTTGAAAC+AGG | + | chr1.3:68445414-68445433 | MS.gene49181:CDS | 50.0% |
| !!! | GGCCGGAAGTGGTTTTATTC+CGG | + | chr1.3:68445587-68445606 | MS.gene49181:CDS | 50.0% |
| GTTGCAACTTCCCATGCTGG+TGG | + | chr1.3:68444898-68444917 | MS.gene49181:CDS | 55.0% | |
| TGGGGCCAAAATGGCAACGA+AGG | + | chr1.3:68444934-68444953 | MS.gene49181:CDS | 55.0% | |
| ! | TTTAGGGCTGCCGGCGTCTA+CGG | + | chr1.3:68445560-68445579 | MS.gene49181:CDS | 60.0% |
| AGGGCTGCCGGCGTCTACGG+CGG | + | chr1.3:68445563-68445582 | MS.gene49181:CDS | 75.0% | |
| TCTACGGCGGCGGCCGGAAG+TGG | + | chr1.3:68445576-68445595 | MS.gene49181:CDS | 75.0% | |
| ! | GCTGCCGGCGTCTACGGCGG+CGG | + | chr1.3:68445566-68445585 | MS.gene49181:CDS | 80.0% |
| ! | CCGGCCGCCGCCGTAGACGC+CGG | - | chr1.3:68445573-68445592 | None:intergenic | 85.0% |
| ! | CCGGCGTCTACGGCGGCGGC+CGG | + | chr1.3:68445570-68445589 | MS.gene49181:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 68444844 | 68445737 | 68444844 | ID=MS.gene49181 |
| chr1.3 | mRNA | 68444844 | 68445737 | 68444844 | ID=MS.gene49181.t1;Parent=MS.gene49181 |
| chr1.3 | exon | 68444844 | 68445737 | 68444844 | ID=MS.gene49181.t1.exon1;Parent=MS.gene49181.t1 |
| chr1.3 | CDS | 68444844 | 68445737 | 68444844 | ID=cds.MS.gene49181.t1;Parent=MS.gene49181.t1 |
| Gene Sequence |
| Protein sequence |
