AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene88886


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88886.t1 MTR_1g097935 99.743 389 1 0 1 389 1 389 0.0 803
MS.gene88886.t1 MTR_1g097910 99.486 389 2 0 1 389 1 389 0.0 803
MS.gene88886.t1 MTR_1g098140 99.486 389 2 0 1 389 1 389 0.0 801
MS.gene88886.t1 MTR_7g016800 98.201 389 7 0 1 389 1 389 0.0 791
MS.gene88886.t1 MTR_7g016720 98.458 389 6 0 1 389 1 389 0.0 791
MS.gene88886.t1 MTR_7g016820 98.201 389 7 0 1 389 1 389 0.0 791
MS.gene88886.t1 MTR_5g007730 97.686 389 9 0 1 389 1 389 0.0 791
MS.gene88886.t1 MTR_7g016700 97.686 389 9 0 1 389 1 389 0.0 790
MS.gene88886.t1 MTR_7g016780 97.686 389 9 0 1 389 1 389 0.0 788
MS.gene88886.t1 MTR_5g007760 97.429 389 10 0 1 389 1 389 0.0 788
MS.gene88886.t1 MTR_5g007713 96.401 389 14 0 1 389 1 389 0.0 781
MS.gene88886.t1 MTR_5g007717 96.144 389 15 0 1 389 1 389 0.0 780
MS.gene88886.t1 MTR_3g083920 90.722 388 36 0 1 388 1 388 0.0 748
MS.gene88886.t1 MTR_3g083910 89.948 388 39 0 1 388 1 388 0.0 745
MS.gene88886.t1 MTR_2g058470 87.147 389 50 0 1 389 1 389 0.0 714
MS.gene88886.t1 MTR_3g086260 81.701 388 71 0 1 388 1 388 0.0 676
MS.gene88886.t1 MTR_7g084300 80.206 389 77 0 1 389 1 389 0.0 671
MS.gene88886.t1 MTR_7g113405 96.040 303 12 0 87 389 1 303 0.0 598
MS.gene88886.t1 MTR_3g088675 66.067 389 132 0 1 389 1 389 0.0 572
MS.gene88886.t1 MTR_5g007740 80.061 326 65 0 64 389 1 326 0.0 547
MS.gene88886.t1 MTR_5g007723 67.910 402 80 5 7 389 27 398 0.0 531
MS.gene88886.t1 MTR_5g007770 77.667 300 34 2 70 369 1 267 9.84e-167 467
MS.gene88886.t1 MTR_3g088670 48.974 390 185 6 10 388 2 388 7.05e-130 379
MS.gene88886.t1 MTR_4g075560 42.408 382 213 4 9 387 11 388 6.72e-102 307
MS.gene88886.t1 MTR_4g078730 37.534 373 226 2 15 387 24 389 3.35e-92 282
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88886.t1 AT5G13930 82.474 388 67 1 3 389 8 395 0.0 672
MS.gene88886.t1 AT4G34850 40.584 377 220 3 15 389 18 392 7.23e-96 292
MS.gene88886.t1 AT4G00040 40.318 377 215 5 14 387 16 385 3.76e-94 287
MS.gene88886.t1 AT1G02050 39.628 376 217 5 15 387 24 392 2.76e-86 267
MS.gene88886.t1 AT4G34850 40.000 320 189 2 72 389 1 319 1.28e-80 250

Find 88 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATAGGTTTCTCAATTTC+TGG 0.101255 1.1:-70436503 None:intergenic
TGCAGTTCCAATGGCTAAAA+TGG 0.225262 1.1:-70435746 None:intergenic
CTGATTACAATTCAATCTTT+TGG 0.254027 1.1:+70436693 MS.gene88886:CDS
TACCAACAAGGTTGCTTTGC+AGG 0.283953 1.1:+70436293 MS.gene88886:CDS
CTTTCAAAATCTCCTCTGTT+AGG 0.305425 1.1:-70436028 None:intergenic
TCAATGGCCCCTTCACTATC+TGG 0.309674 1.1:-70436557 None:intergenic
CTTGTTGGACAAGCACTATT+TGG 0.314421 1.1:+70436440 MS.gene88886:CDS
AGAGAAGTGCTCAGTGAATA+TGG 0.317887 1.1:+70436797 MS.gene88886:CDS
GCTTCGTTTGGCTAAAGATT+TGG 0.342769 1.1:+70436325 MS.gene88886:CDS
GTCTTCGTCCATACGTAAAA+AGG 0.344471 1.1:+70436261 MS.gene88886:CDS
TCTACTTGATCTAGAATTGC+AGG 0.346751 1.1:-70436734 None:intergenic
TGAATACATGGCACCTTCAT+TGG 0.347646 1.1:+70436067 MS.gene88886:CDS
GGTTTCTCAATTTCTGGTAC+TGG 0.362281 1.1:-70436497 None:intergenic
AAGTGAGTAATCTTTGACTT+TGG 0.381814 1.1:-70436173 None:intergenic
AGGAGGCACGGTGCTTCGTT+TGG 0.381968 1.1:+70436313 MS.gene88886:CDS
TACCAACTCACAAAACTCTT+AGG 0.382277 1.1:+70436239 MS.gene88886:CDS
CCAATGGCTAAAATGGTTGC+AGG 0.393820 1.1:-70435739 None:intergenic
CACCTTCTTAAAGATGTTCC+CGG 0.401953 1.1:+70436611 MS.gene88886:CDS
ATATTCACTGAGCACTTCTC+TGG 0.410278 1.1:-70436795 None:intergenic
GGAGCTGCTGCACTGATTGT+TGG 0.411529 1.1:+70436467 MS.gene88886:CDS
ACTCACTTGGACAGCCTTGT+TGG 0.426712 1.1:+70436425 MS.gene88886:CDS
ACGGGAGAAGGACTTGAGTT+TGG 0.429869 1.1:+70436896 MS.gene88886:CDS
AGTGAAAGCTATAAAAGAAT+GGG 0.430526 1.1:+70436145 MS.gene88886:CDS
GATAGTGAAGGGGCCATTGA+TGG 0.440309 1.1:+70436560 MS.gene88886:CDS
CTTTGTTCAACACAGTTGGC+TGG 0.449203 1.1:-70435772 None:intergenic
GTCACTGCAGTTACATTTCG+CGG 0.450823 1.1:+70436392 MS.gene88886:CDS
CTGAAATTCGCACTGCTCAA+AGG 0.456355 1.1:+70435707 MS.gene88886:CDS
GCGCAAAACAACGGTTTCAA+TGG 0.461439 1.1:-70436948 None:intergenic
TGAAATTCGCACTGCTCAAA+GGG 0.462102 1.1:+70435708 MS.gene88886:CDS
TTCACGAAGGTGACCATCAA+TGG 0.470504 1.1:-70436573 None:intergenic
GCAAGACATGGTGGTGGTAG+AGG 0.474656 1.1:+70436097 MS.gene88886:CDS
CTCCTGCAAAGCAACCTTGT+TGG 0.478750 1.1:-70436295 None:intergenic
GTGAGTTGGTAATCAGCTCC+AGG 0.479782 1.1:-70436227 None:intergenic
CAGTGAAAGCTATAAAAGAA+TGG 0.482912 1.1:+70436144 MS.gene88886:CDS
CTGTCCAAGTGAGTATCACT+AGG 0.483602 1.1:-70436416 None:intergenic
AAAGAACATCAATAAAGCAT+TGG 0.485622 1.1:+70436643 MS.gene88886:CDS
GATGGTCACCTTCGTGAAGC+TGG 0.486168 1.1:+70436578 MS.gene88886:CDS
TCTAGAATTGCAGGTCCACC+AGG 0.500155 1.1:-70436725 None:intergenic
TTGCGCAGTGTCGCTATATG+AGG 0.502378 1.1:+70436965 MS.gene88886:CDS
GGCTGGATTTGCAGTTCCAA+TGG 0.506046 1.1:-70435755 None:intergenic
TGGCACCTTCATTGGATGCT+AGG 0.506096 1.1:+70436075 MS.gene88886:CDS
GATGTTCTTTGAAACAATCC+CGG 0.506109 1.1:-70436630 None:intergenic
TTCACTGAGCACTTCTCTGG+TGG 0.523654 1.1:-70436792 None:intergenic
GGACTGAAGACCACGGGAGA+AGG 0.524843 1.1:+70436884 MS.gene88886:CDS
TCCTAGTGTTTGTGAATACA+TGG 0.528394 1.1:+70436055 MS.gene88886:CDS
CGGCCCTAGTGATACTCACT+TGG 0.529910 1.1:+70436412 MS.gene88886:CDS
CATCAATAAAGCATTGGTTG+AGG 0.540608 1.1:+70436649 MS.gene88886:CDS
ACCTTCTTAAAGATGTTCCC+GGG 0.543150 1.1:+70436612 MS.gene88886:CDS
ATGTTCTTTGAAACAATCCC+GGG 0.547822 1.1:-70436629 None:intergenic
AGGTTGCTTTGCAGGAGGCA+CGG 0.555669 1.1:+70436301 MS.gene88886:CDS
AGAAAGAAGTCAGCTCAAGA+TGG 0.559235 1.1:+70436863 MS.gene88886:CDS
GGACAAGCACTATTTGGAGA+TGG 0.563405 1.1:+70436446 MS.gene88886:CDS
GCAGCCTCCTTGCCTAGTCT+AGG 0.568229 1.1:-70436122 None:intergenic
TCCCGGGAACATCTTTAAGA+AGG 0.569831 1.1:-70436613 None:intergenic
AGGCATGTCTACACCACTTG+TGG 0.569916 1.1:-70436207 None:intergenic
ACAAGTGGTGTAGACATGCC+TGG 0.572074 1.1:+70436209 MS.gene88886:CDS
CAAATAGTGCTTGTCCAACA+AGG 0.572762 1.1:-70436439 None:intergenic
AGCGACACTGCGCAAAACAA+CGG 0.575560 1.1:-70436957 None:intergenic
CGCACTGCTCAAAGGGCAGA+AGG 0.577617 1.1:+70435715 MS.gene88886:CDS
TCTTGCCTAGCATCCAATGA+AGG 0.579296 1.1:-70436080 None:intergenic
GTGATAAATCTATGATCAAG+AGG 0.584564 1.1:+70435994 MS.gene88886:CDS
CAATTGCTCCAGATAGTGAA+GGG 0.593639 1.1:+70436549 MS.gene88886:CDS
TTGATCGTTTGCACCACAAG+TGG 0.595788 1.1:+70436194 MS.gene88886:CDS
AGAGGTACCTAGACTAGGCA+AGG 0.600359 1.1:+70436115 MS.gene88886:CDS
CAAGATGGACTGAAGACCAC+GGG 0.604373 1.1:+70436878 MS.gene88886:CDS
ACAATTGCTCCAGATAGTGA+AGG 0.608112 1.1:+70436548 MS.gene88886:CDS
TGTGCTTTGTTCAACACAGT+TGG 0.612931 1.1:-70435776 None:intergenic
TTGTAATCAGAAATTCCCAA+TGG 0.619803 1.1:-70436680 None:intergenic
CAACAAAGGTGCTCGTGTGT+TGG 0.620198 1.1:+70436355 MS.gene88886:CDS
GTGGTAGAGGTACCTAGACT+AGG 0.623290 1.1:+70436110 MS.gene88886:CDS
CAACAAGGTTGCTTTGCAGG+AGG 0.634702 1.1:+70436296 MS.gene88886:CDS
AAACTCAAGTCCTTCTCCCG+TGG 0.634843 1.1:-70436894 None:intergenic
ATTGGATGCTAGGCAAGACA+TGG 0.648366 1.1:+70436085 MS.gene88886:CDS
CAATGGCTAAAATGGTTGCA+GGG 0.655281 1.1:-70435738 None:intergenic
GTGAAAGCTATAAAAGAATG+GGG 0.667253 1.1:+70436146 MS.gene88886:CDS
GAGATACATGTACCTAACAG+AGG 0.667740 1.1:+70436016 MS.gene88886:CDS
TCAAGATGGACTGAAGACCA+CGG 0.668535 1.1:+70436877 MS.gene88886:CDS
TGTCCAAGTGAGTATCACTA+GGG 0.674277 1.1:-70436415 None:intergenic
ACGGTTTCAATGGTAAGACC+CGG 0.675121 1.1:-70436938 None:intergenic
TGCTAGGCAAGACATGGTGG+TGG 0.675229 1.1:+70436091 MS.gene88886:CDS
GCCATGTATTCACAAACACT+AGG 0.680230 1.1:-70436056 None:intergenic
GATTTGGCTGAGAACAACAA+AGG 0.683242 1.1:+70436341 MS.gene88886:CDS
GGTACCTAGACTAGGCAAGG+AGG 0.684618 1.1:+70436118 MS.gene88886:CDS
ATGTTAGTCCAGCTTCACGA+AGG 0.698828 1.1:-70436586 None:intergenic
AATTGCTCCAGATAGTGAAG+GGG 0.700404 1.1:+70436550 MS.gene88886:CDS
AGGTATATGATGTACCAACA+AGG 0.704257 1.1:+70436281 MS.gene88886:CDS
CTAGAATTGCAGGTCCACCA+GGG 0.711261 1.1:-70436724 None:intergenic
GGATGCTAGGCAAGACATGG+TGG 0.737305 1.1:+70436088 MS.gene88886:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATAGCAAAATATATTTAAA+TGG - chr1.1:70435909-70435928 None:intergenic 15.0%
!!! ATATTTTGCTATCTTTACAT+TGG + chr1.1:70435916-70435935 MS.gene88886:intron 20.0%
!!! ATTTAAATGGAAAGTATCTA+AGG - chr1.1:70435896-70435915 None:intergenic 20.0%
! AAAATAGGTTTCTCAATTTC+TGG - chr1.1:70436506-70436525 None:intergenic 25.0%
! AAAGAACATCAATAAAGCAT+TGG + chr1.1:70436643-70436662 MS.gene88886:CDS 25.0%
! AGTGAAAGCTATAAAAGAAT+GGG + chr1.1:70436145-70436164 MS.gene88886:CDS 25.0%
!! ATCATATACCTTTTTACGTA+TGG - chr1.1:70436272-70436291 None:intergenic 25.0%
!! CTGATTACAATTCAATCTTT+TGG + chr1.1:70436693-70436712 MS.gene88886:CDS 25.0%
!!! GTGATTTTAAAGTAGAAATC+AGG - chr1.1:70435805-70435824 None:intergenic 25.0%
AAAAATACTTACACATGCGT+TGG - chr1.1:70435864-70435883 None:intergenic 30.0%
ATCATAGATTTATCACCTGA+AGG - chr1.1:70435990-70436009 None:intergenic 30.0%
CAGTGAAAGCTATAAAAGAA+TGG + chr1.1:70436144-70436163 MS.gene88886:CDS 30.0%
GATATTAGTTCAGCAAACTT+AGG - chr1.1:70435952-70435971 None:intergenic 30.0%
GTGAAAGCTATAAAAGAATG+GGG + chr1.1:70436146-70436165 MS.gene88886:CDS 30.0%
GTGATAAATCTATGATCAAG+AGG + chr1.1:70435994-70436013 MS.gene88886:CDS 30.0%
TCATAGATTTATCACCTGAA+GGG - chr1.1:70435989-70436008 None:intergenic 30.0%
TTGTAATCAGAAATTCCCAA+TGG - chr1.1:70436683-70436702 None:intergenic 30.0%
! AAGTGAGTAATCTTTGACTT+TGG - chr1.1:70436176-70436195 None:intergenic 30.0%
! ATCTTTTCATAATTCCCTTC+AGG + chr1.1:70435972-70435991 MS.gene88886:intron 30.0%
!! TTTCATCTTTTCAGGCTTTA+AGG - chr1.1:70436771-70436790 None:intergenic 30.0%
!!! AACCTATTTTTGAGATGGTT+TGG + chr1.1:70436516-70436535 MS.gene88886:CDS 30.0%
!!! CTTGAGTTTGGTGTTTTATT+TGG + chr1.1:70436908-70436927 MS.gene88886:CDS 30.0%
!!! TGAGAAACCTATTTTTGAGA+TGG + chr1.1:70436511-70436530 MS.gene88886:CDS 30.0%
!!! TTTGGTGTTTTATTTGGCTT+TGG + chr1.1:70436914-70436933 MS.gene88886:CDS 30.0%
AGGTATATGATGTACCAACA+AGG + chr1.1:70436281-70436300 MS.gene88886:CDS 35.0%
CTTTCAAAATCTCCTCTGTT+AGG - chr1.1:70436031-70436050 None:intergenic 35.0%
GTCCAAACCATCTCAAAAAT+AGG - chr1.1:70436521-70436540 None:intergenic 35.0%
TACCAACTCACAAAACTCTT+AGG + chr1.1:70436239-70436258 MS.gene88886:CDS 35.0%
TCCTAGTGTTTGTGAATACA+TGG + chr1.1:70436055-70436074 MS.gene88886:CDS 35.0%
! TCTACTTGATCTAGAATTGC+AGG - chr1.1:70436737-70436756 None:intergenic 35.0%
!! ATGGAAAGTATCTAAGGTAG+CGG - chr1.1:70435890-70435909 None:intergenic 35.0%
!! ATGTTCTTTGAAACAATCCC+GGG - chr1.1:70436632-70436651 None:intergenic 35.0%
!! CATCAATAAAGCATTGGTTG+AGG + chr1.1:70436649-70436668 MS.gene88886:CDS 35.0%
!! GATGTTCTTTGAAACAATCC+CGG - chr1.1:70436633-70436652 None:intergenic 35.0%
!!! TGTTTTATTTGGCTTTGGAC+CGG + chr1.1:70436919-70436938 MS.gene88886:CDS 35.0%
AATTGCTCCAGATAGTGAAG+GGG + chr1.1:70436550-70436569 MS.gene88886:CDS 40.0%
ACAATTGCTCCAGATAGTGA+AGG + chr1.1:70436548-70436567 MS.gene88886:CDS 40.0%
ACCTTCTTAAAGATGTTCCC+GGG + chr1.1:70436612-70436631 MS.gene88886:CDS 40.0%
AGAAAGAAGTCAGCTCAAGA+TGG + chr1.1:70436863-70436882 MS.gene88886:CDS 40.0%
ATATTCACTGAGCACTTCTC+TGG - chr1.1:70436798-70436817 None:intergenic 40.0%
CAAATAGTGCTTGTCCAACA+AGG - chr1.1:70436442-70436461 None:intergenic 40.0%
CAATGGCTAAAATGGTTGCA+GGG - chr1.1:70435741-70435760 None:intergenic 40.0%
CAATTGCTCCAGATAGTGAA+GGG + chr1.1:70436549-70436568 MS.gene88886:CDS 40.0%
CACCTTCTTAAAGATGTTCC+CGG + chr1.1:70436611-70436630 MS.gene88886:CDS 40.0%
CTTGTTGGACAAGCACTATT+TGG + chr1.1:70436440-70436459 MS.gene88886:CDS 40.0%
GAGATACATGTACCTAACAG+AGG + chr1.1:70436016-70436035 MS.gene88886:CDS 40.0%
GATTTGGCTGAGAACAACAA+AGG + chr1.1:70436341-70436360 MS.gene88886:CDS 40.0%
GCCATGTATTCACAAACACT+AGG - chr1.1:70436059-70436078 None:intergenic 40.0%
GCTTCGTTTGGCTAAAGATT+TGG + chr1.1:70436325-70436344 MS.gene88886:CDS 40.0%
GTCTTCGTCCATACGTAAAA+AGG + chr1.1:70436261-70436280 MS.gene88886:CDS 40.0%
TGAAATTCGCACTGCTCAAA+GGG + chr1.1:70435708-70435727 MS.gene88886:CDS 40.0%
TGAATACATGGCACCTTCAT+TGG + chr1.1:70436067-70436086 MS.gene88886:CDS 40.0%
TGCAGTTCCAATGGCTAAAA+TGG - chr1.1:70435749-70435768 None:intergenic 40.0%
TGTCCAAGTGAGTATCACTA+GGG - chr1.1:70436418-70436437 None:intergenic 40.0%
! GTTGAGGCTTTTGAACCATT+GGG + chr1.1:70436665-70436684 MS.gene88886:CDS 40.0%
! TGTGCTTTGTTCAACACAGT+TGG - chr1.1:70435779-70435798 None:intergenic 40.0%
!! AGAGAAGTGCTCAGTGAATA+TGG + chr1.1:70436797-70436816 MS.gene88886:CDS 40.0%
!! GACCTAAGAGTTTTGTGAGT+TGG - chr1.1:70436244-70436263 None:intergenic 40.0%
!! GGTTTCTCAATTTCTGGTAC+TGG - chr1.1:70436500-70436519 None:intergenic 40.0%
!!! GTTTTATTTGGCTTTGGACC+GGG + chr1.1:70436920-70436939 MS.gene88886:CDS 40.0%
ACGGTTTCAATGGTAAGACC+CGG - chr1.1:70436941-70436960 None:intergenic 45.0%
ATGTTAGTCCAGCTTCACGA+AGG - chr1.1:70436589-70436608 None:intergenic 45.0%
ATTGGATGCTAGGCAAGACA+TGG + chr1.1:70436085-70436104 MS.gene88886:CDS 45.0%
CCAATGGCTAAAATGGTTGC+AGG - chr1.1:70435742-70435761 None:intergenic 45.0%
CTGAAATTCGCACTGCTCAA+AGG + chr1.1:70435707-70435726 MS.gene88886:CDS 45.0%
CTGTCCAAGTGAGTATCACT+AGG - chr1.1:70436419-70436438 None:intergenic 45.0%
CTTTGTTCAACACAGTTGGC+TGG - chr1.1:70435775-70435794 None:intergenic 45.0%
GCGCAAAACAACGGTTTCAA+TGG - chr1.1:70436951-70436970 None:intergenic 45.0%
GGACAAGCACTATTTGGAGA+TGG + chr1.1:70436446-70436465 MS.gene88886:CDS 45.0%
GTCACTGCAGTTACATTTCG+CGG + chr1.1:70436392-70436411 MS.gene88886:CDS 45.0%
TCTTGCCTAGCATCCAATGA+AGG - chr1.1:70436083-70436102 None:intergenic 45.0%
TTCACGAAGGTGACCATCAA+TGG - chr1.1:70436576-70436595 None:intergenic 45.0%
TTGATCGTTTGCACCACAAG+TGG + chr1.1:70436194-70436213 MS.gene88886:CDS 45.0%
! ATCTTTTGGATTGCACACCC+TGG + chr1.1:70436707-70436726 MS.gene88886:CDS 45.0%
! CTGGTGGCTTTCATCTTTTC+AGG - chr1.1:70436779-70436798 None:intergenic 45.0%
! GGTTGAGGCTTTTGAACCAT+TGG + chr1.1:70436664-70436683 MS.gene88886:CDS 45.0%
! TACCAACAAGGTTGCTTTGC+AGG + chr1.1:70436293-70436312 MS.gene88886:CDS 45.0%
! TCCCGGGAACATCTTTAAGA+AGG - chr1.1:70436616-70436635 None:intergenic 45.0%
!! CCTGCAACCATTTTAGCCAT+TGG + chr1.1:70435739-70435758 MS.gene88886:CDS 45.0%
!! TCAAGATGGACTGAAGACCA+CGG + chr1.1:70436877-70436896 MS.gene88886:CDS 45.0%
AAACTCAAGTCCTTCTCCCG+TGG - chr1.1:70436897-70436916 None:intergenic 50.0%
ACAAGTGGTGTAGACATGCC+TGG + chr1.1:70436209-70436228 MS.gene88886:CDS 50.0%
ACGGGAGAAGGACTTGAGTT+TGG + chr1.1:70436896-70436915 MS.gene88886:CDS 50.0%
AGCGACACTGCGCAAAACAA+CGG - chr1.1:70436960-70436979 None:intergenic 50.0%
AGGCATGTCTACACCACTTG+TGG - chr1.1:70436210-70436229 None:intergenic 50.0%
CTAGAATTGCAGGTCCACCA+GGG - chr1.1:70436727-70436746 None:intergenic 50.0%
CTCCTGCAAAGCAACCTTGT+TGG - chr1.1:70436298-70436317 None:intergenic 50.0%
GATAGTGAAGGGGCCATTGA+TGG + chr1.1:70436560-70436579 MS.gene88886:CDS 50.0%
GGCTGGATTTGCAGTTCCAA+TGG - chr1.1:70435758-70435777 None:intergenic 50.0%
TCAATGGCCCCTTCACTATC+TGG - chr1.1:70436560-70436579 None:intergenic 50.0%
TGGCACCTTCATTGGATGCT+AGG + chr1.1:70436075-70436094 MS.gene88886:CDS 50.0%
TTCACTGAGCACTTCTCTGG+TGG - chr1.1:70436795-70436814 None:intergenic 50.0%
! ACTCACTTGGACAGCCTTGT+TGG + chr1.1:70436425-70436444 MS.gene88886:CDS 50.0%
! CAACAAGGTTGCTTTGCAGG+AGG + chr1.1:70436296-70436315 MS.gene88886:CDS 50.0%
! TCTAGAATTGCAGGTCCACC+AGG - chr1.1:70436728-70436747 None:intergenic 50.0%
! TTTTGGATTGCACACCCTGG+TGG + chr1.1:70436710-70436729 MS.gene88886:CDS 50.0%
!! AGAGGTACCTAGACTAGGCA+AGG + chr1.1:70436115-70436134 MS.gene88886:CDS 50.0%
!! CAACAAAGGTGCTCGTGTGT+TGG + chr1.1:70436355-70436374 MS.gene88886:CDS 50.0%
!! CAAGATGGACTGAAGACCAC+GGG + chr1.1:70436878-70436897 MS.gene88886:CDS 50.0%
!! GTGAGTTGGTAATCAGCTCC+AGG - chr1.1:70436230-70436249 None:intergenic 50.0%
!! GTGGTAGAGGTACCTAGACT+AGG + chr1.1:70436110-70436129 MS.gene88886:CDS 50.0%
CGGCCCTAGTGATACTCACT+TGG + chr1.1:70436412-70436431 MS.gene88886:CDS 55.0%
GATGGTCACCTTCGTGAAGC+TGG + chr1.1:70436578-70436597 MS.gene88886:CDS 55.0%
GGATGCTAGGCAAGACATGG+TGG + chr1.1:70436088-70436107 MS.gene88886:CDS 55.0%
GGTACCTAGACTAGGCAAGG+AGG + chr1.1:70436118-70436137 MS.gene88886:CDS 55.0%
TGCTAGGCAAGACATGGTGG+TGG + chr1.1:70436091-70436110 MS.gene88886:CDS 55.0%
! AGGTTGCTTTGCAGGAGGCA+CGG + chr1.1:70436301-70436320 MS.gene88886:CDS 55.0%
!! GCAAGACATGGTGGTGGTAG+AGG + chr1.1:70436097-70436116 MS.gene88886:CDS 55.0%
!! GGAGCTGCTGCACTGATTGT+TGG + chr1.1:70436467-70436486 MS.gene88886:CDS 55.0%
CGCACTGCTCAAAGGGCAGA+AGG + chr1.1:70435715-70435734 MS.gene88886:CDS 60.0%
GCAGCCTCCTTGCCTAGTCT+AGG - chr1.1:70436125-70436144 None:intergenic 60.0%
GGACTGAAGACCACGGGAGA+AGG + chr1.1:70436884-70436903 MS.gene88886:CDS 60.0%
! AGGAGGCACGGTGCTTCGTT+TGG + chr1.1:70436313-70436332 MS.gene88886:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 70435694 70436985 70435694 ID=MS.gene88886
chr1.1 mRNA 70435694 70436985 70435694 ID=MS.gene88886.t1;Parent=MS.gene88886
chr1.1 exon 70435694 70435871 70435694 ID=MS.gene88886.t1.exon1;Parent=MS.gene88886.t1
chr1.1 CDS 70435694 70435871 70435694 ID=cds.MS.gene88886.t1;Parent=MS.gene88886.t1
chr1.1 exon 70435994 70436985 70435994 ID=MS.gene88886.t1.exon2;Parent=MS.gene88886.t1
chr1.1 CDS 70435994 70436985 70435994 ID=cds.MS.gene88886.t1;Parent=MS.gene88886.t1
Gene Sequence

>MS.gene88886

ATGGTTAGTGTGTCTGAAATTCGCACTGCTCAAAGGGCAGAAGGCCCTGCAACCATTTTAGCCATTGGAACTGCAAATCCAGCCAACTGTGTTGAACAAAGCACATATCCTGATTTCTACTTTAAAATCACAAATAGTGAACACAAGACTGAACTCAAAGAGAAATTCCAACGCATGTGTAAGTATTTTTTTTCCGCTACCTTAGATACTTTCCATTTAAATATATTTTGCTATCTTTACATTGGTTTCGTGTCACCTAAGTTTGCTGAACTAATATCATCTTTTCATAATTCCCTTCAGGTGATAAATCTATGATCAAGAGGAGATACATGTACCTAACAGAGGAGATTTTGAAAGAGAATCCTAGTGTTTGTGAATACATGGCACCTTCATTGGATGCTAGGCAAGACATGGTGGTGGTAGAGGTACCTAGACTAGGCAAGGAGGCTGCAGTGAAAGCTATAAAAGAATGGGGTCAACCAAAGTCAAAGATTACTCACTTGATCGTTTGCACCACAAGTGGTGTAGACATGCCTGGAGCTGATTACCAACTCACAAAACTCTTAGGTCTTCGTCCATACGTAAAAAGGTATATGATGTACCAACAAGGTTGCTTTGCAGGAGGCACGGTGCTTCGTTTGGCTAAAGATTTGGCTGAGAACAACAAAGGTGCTCGTGTGTTGGTTGTCTGTTCTGAAGTCACTGCAGTTACATTTCGCGGCCCTAGTGATACTCACTTGGACAGCCTTGTTGGACAAGCACTATTTGGAGATGGAGCTGCTGCACTGATTGTTGGTTCAGATCCAGTACCAGAAATTGAGAAACCTATTTTTGAGATGGTTTGGACTGCACAAACAATTGCTCCAGATAGTGAAGGGGCCATTGATGGTCACCTTCGTGAAGCTGGACTAACATTTCACCTTCTTAAAGATGTTCCCGGGATTGTTTCAAAGAACATCAATAAAGCATTGGTTGAGGCTTTTGAACCATTGGGAATTTCTGATTACAATTCAATCTTTTGGATTGCACACCCTGGTGGACCTGCAATTCTAGATCAAGTAGAGCAAAAGTTAGCCTTAAAGCCTGAAAAGATGAAAGCCACCAGAGAAGTGCTCAGTGAATATGGAAATATGTCAAGTGCATGTGTTTTGTTTATCTTAGATGAAATGAGAAAGAAGTCAGCTCAAGATGGACTGAAGACCACGGGAGAAGGACTTGAGTTTGGTGTTTTATTTGGCTTTGGACCGGGTCTTACCATTGAAACCGTTGTTTTGCGCAGTGTCGCTATATGA

Protein sequence

>MS.gene88886.t1

MVSVSEIRTAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPSVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNINKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMKATREVLSEYGNMSSACVLFILDEMRKKSAQDGLKTTGEGLEFGVLFGFGPGLTIETVVLRSVAI