Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88886.t1 | XP_013469604.1 | 99.7 | 389 | 1 | 0 | 1 | 389 | 1 | 389 | 1.20E-220 | 775.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88886.t1 | P30076 | 99.5 | 389 | 2 | 0 | 1 | 389 | 1 | 389 | 1.5e-222 | 773.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88886.t1 | A0A072VPA5 | 99.7 | 389 | 1 | 0 | 1 | 389 | 1 | 389 | 9.0e-221 | 775.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049171 | MS.gene88886 | -0.820829 | 5.58E-53 | -1.69E-46 |
MS.gene049232 | MS.gene88886 | -0.807769 | 4.30E-50 | -1.69E-46 |
MS.gene049259 | MS.gene88886 | 0.80901 | 2.34E-50 | -1.69E-46 |
MS.gene049281 | MS.gene88886 | 0.816232 | 6.15E-52 | -1.69E-46 |
MS.gene049285 | MS.gene88886 | -0.804969 | 1.67E-49 | -1.69E-46 |
MS.gene049312 | MS.gene88886 | 0.82243 | 2.38E-53 | -1.69E-46 |
MS.gene049320 | MS.gene88886 | -0.831306 | 1.80E-55 | -1.69E-46 |
MS.gene049483 | MS.gene88886 | 0.806154 | 9.44E-50 | -1.69E-46 |
MS.gene049611 | MS.gene88886 | 0.812202 | 4.77E-51 | -1.69E-46 |
MS.gene049634 | MS.gene88886 | 0.809572 | 1.77E-50 | -1.69E-46 |
MS.gene049710 | MS.gene88886 | 0.805642 | 1.21E-49 | -1.69E-46 |
MS.gene05010 | MS.gene88886 | -0.802413 | 5.68E-49 | -1.69E-46 |
MS.gene05015 | MS.gene88886 | 0.816105 | 6.57E-52 | -1.69E-46 |
MS.gene050216 | MS.gene88886 | -0.819896 | 9.13E-53 | -1.69E-46 |
MS.gene050323 | MS.gene88886 | -0.806246 | 9.03E-50 | -1.69E-46 |
MS.gene050363 | MS.gene88886 | 0.834818 | 2.41E-56 | -1.69E-46 |
MS.gene050381 | MS.gene88886 | 0.896749 | 2.74E-76 | -1.69E-46 |
MS.gene050504 | MS.gene88886 | -0.844583 | 6.91E-59 | -1.69E-46 |
MS.gene050577 | MS.gene88886 | -0.800159 | 1.64E-48 | -1.69E-46 |
MS.gene050612 | MS.gene88886 | -0.839351 | 1.67E-57 | -1.69E-46 |
MS.gene05080 | MS.gene88886 | -0.800335 | 1.51E-48 | -1.69E-46 |
MS.gene050868 | MS.gene88886 | -0.837655 | 4.57E-57 | -1.69E-46 |
MS.gene050871 | MS.gene88886 | -0.836592 | 8.55E-57 | -1.69E-46 |
MS.gene050883 | MS.gene88886 | 0.946144 | 8.07E-105 | -1.69E-46 |
MS.gene050986 | MS.gene88886 | -0.81643 | 5.55E-52 | -1.69E-46 |
MS.gene051044 | MS.gene88886 | 0.860745 | 1.67E-63 | -1.69E-46 |
MS.gene05104 | MS.gene88886 | 0.80768 | 4.49E-50 | -1.69E-46 |
MS.gene051127 | MS.gene88886 | 0.878629 | 2.41E-69 | -1.69E-46 |
MS.gene051138 | MS.gene88886 | 0.843338 | 1.49E-58 | -1.69E-46 |
MS.gene051364 | MS.gene88886 | 0.818671 | 1.74E-52 | -1.69E-46 |
MS.gene051366 | MS.gene88886 | 0.803064 | 4.17E-49 | -1.69E-46 |
MS.gene051410 | MS.gene88886 | 0.800837 | 1.19E-48 | -1.69E-46 |
MS.gene05141 | MS.gene88886 | 0.839214 | 1.81E-57 | -1.69E-46 |
MS.gene051946 | MS.gene88886 | 0.884537 | 1.76E-71 | -1.69E-46 |
MS.gene052053 | MS.gene88886 | 0.809214 | 2.11E-50 | -1.69E-46 |
MS.gene052164 | MS.gene88886 | -0.801058 | 1.08E-48 | -1.69E-46 |
MS.gene052329 | MS.gene88886 | 0.804715 | 1.89E-49 | -1.69E-46 |
MS.gene052482 | MS.gene88886 | -0.836769 | 7.71E-57 | -1.69E-46 |
MS.gene052486 | MS.gene88886 | -0.829333 | 5.46E-55 | -1.69E-46 |
MS.gene052566 | MS.gene88886 | 0.814006 | 1.92E-51 | -1.69E-46 |
MS.gene052802 | MS.gene88886 | 0.828409 | 9.14E-55 | -1.69E-46 |
MS.gene053069 | MS.gene88886 | 0.836582 | 8.60E-57 | -1.69E-46 |
MS.gene053203 | MS.gene88886 | -0.817831 | 2.69E-52 | -1.69E-46 |
MS.gene053420 | MS.gene88886 | 0.859198 | 4.88E-63 | -1.69E-46 |
MS.gene053488 | MS.gene88886 | 0.841835 | 3.74E-58 | -1.69E-46 |
MS.gene053549 | MS.gene88886 | 0.841045 | 6.03E-58 | -1.69E-46 |
MS.gene053561 | MS.gene88886 | 0.863979 | 1.69E-64 | -1.69E-46 |
MS.gene053826 | MS.gene88886 | 0.853299 | 2.62E-61 | -1.69E-46 |
MS.gene053887 | MS.gene88886 | 0.801468 | 8.88E-49 | -1.69E-46 |
MS.gene054054 | MS.gene88886 | 0.828187 | 1.03E-54 | -1.69E-46 |
MS.gene054056 | MS.gene88886 | 0.839232 | 1.79E-57 | -1.69E-46 |
MS.gene054595 | MS.gene88886 | -0.823557 | 1.30E-53 | -1.69E-46 |
MS.gene054616 | MS.gene88886 | 0.812874 | 3.40E-51 | -1.69E-46 |
MS.gene054707 | MS.gene88886 | 0.823313 | 1.48E-53 | -1.69E-46 |
MS.gene054708 | MS.gene88886 | 0.863991 | 1.68E-64 | -1.69E-46 |
MS.gene05470 | MS.gene88886 | -0.812282 | 4.58E-51 | -1.69E-46 |
MS.gene054954 | MS.gene88886 | -0.81731 | 3.52E-52 | -1.69E-46 |
MS.gene055124 | MS.gene88886 | 0.873019 | 2.03E-67 | -1.69E-46 |
MS.gene055139 | MS.gene88886 | 0.842621 | 2.31E-58 | -1.69E-46 |
MS.gene055154 | MS.gene88886 | 0.886652 | 2.84E-72 | -1.69E-46 |
MS.gene055202 | MS.gene88886 | 0.835156 | 1.98E-56 | -1.69E-46 |
MS.gene055362 | MS.gene88886 | -0.821004 | 5.08E-53 | -1.69E-46 |
MS.gene055502 | MS.gene88886 | -0.842571 | 2.38E-58 | -1.69E-46 |
MS.gene055549 | MS.gene88886 | 0.840968 | 6.32E-58 | -1.69E-46 |
MS.gene055550 | MS.gene88886 | 0.837136 | 6.21E-57 | -1.69E-46 |
MS.gene055551 | MS.gene88886 | 0.823237 | 1.54E-53 | -1.69E-46 |
MS.gene055748 | MS.gene88886 | -0.802443 | 5.60E-49 | -1.69E-46 |
MS.gene055750 | MS.gene88886 | -0.814222 | 1.72E-51 | -1.69E-46 |
MS.gene055751 | MS.gene88886 | -0.809525 | 1.81E-50 | -1.69E-46 |
MS.gene05589 | MS.gene88886 | -0.833961 | 3.95E-56 | -1.69E-46 |
MS.gene055942 | MS.gene88886 | 0.827727 | 1.33E-54 | -1.69E-46 |
MS.gene055961 | MS.gene88886 | 0.834356 | 3.14E-56 | -1.69E-46 |
MS.gene056224 | MS.gene88886 | 0.818796 | 1.63E-52 | -1.69E-46 |
MS.gene056310 | MS.gene88886 | 0.89766 | 1.13E-76 | -1.69E-46 |
MS.gene056311 | MS.gene88886 | 0.917323 | 6.11E-86 | -1.69E-46 |
MS.gene056313 | MS.gene88886 | 0.884422 | 1.94E-71 | -1.69E-46 |
MS.gene056365 | MS.gene88886 | 0.800042 | 1.73E-48 | -1.69E-46 |
MS.gene056408 | MS.gene88886 | 0.82476 | 6.78E-54 | -1.69E-46 |
MS.gene056504 | MS.gene88886 | -0.847261 | 1.29E-59 | -1.69E-46 |
MS.gene056510 | MS.gene88886 | -0.814808 | 1.28E-51 | -1.69E-46 |
MS.gene056530 | MS.gene88886 | 0.806222 | 9.13E-50 | -1.69E-46 |
MS.gene056657 | MS.gene88886 | -0.802222 | 6.22E-49 | -1.69E-46 |
MS.gene056856 | MS.gene88886 | 0.805548 | 1.27E-49 | -1.69E-46 |
MS.gene057014 | MS.gene88886 | 0.896779 | 2.66E-76 | -1.69E-46 |
MS.gene057293 | MS.gene88886 | 0.803406 | 3.54E-49 | -1.69E-46 |
MS.gene058068 | MS.gene88886 | 0.821843 | 3.26E-53 | -1.69E-46 |
MS.gene058093 | MS.gene88886 | 0.820607 | 6.27E-53 | -1.69E-46 |
MS.gene058099 | MS.gene88886 | 0.864135 | 1.51E-64 | -1.69E-46 |
MS.gene058108 | MS.gene88886 | 0.839216 | 1.81E-57 | -1.69E-46 |
MS.gene058109 | MS.gene88886 | 0.884868 | 1.33E-71 | -1.69E-46 |
MS.gene058111 | MS.gene88886 | 0.902227 | 1.20E-78 | -1.69E-46 |
MS.gene058117 | MS.gene88886 | 0.824643 | 7.22E-54 | -1.69E-46 |
MS.gene058157 | MS.gene88886 | -0.802177 | 6.35E-49 | -1.69E-46 |
MS.gene058171 | MS.gene88886 | 0.903634 | 2.83E-79 | -1.69E-46 |
MS.gene058173 | MS.gene88886 | 0.900838 | 4.91E-78 | -1.69E-46 |
MS.gene058175 | MS.gene88886 | 0.906103 | 2.12E-80 | -1.69E-46 |
MS.gene058268 | MS.gene88886 | 0.818402 | 2.00E-52 | -1.69E-46 |
MS.gene058269 | MS.gene88886 | 0.801767 | 7.71E-49 | -1.69E-46 |
MS.gene058334 | MS.gene88886 | 0.802071 | 6.67E-49 | -1.69E-46 |
MS.gene05837 | MS.gene88886 | -0.81632 | 5.88E-52 | -1.69E-46 |
MS.gene058419 | MS.gene88886 | -0.813637 | 2.31E-51 | -1.69E-46 |
MS.gene058493 | MS.gene88886 | 0.864813 | 9.28E-65 | -1.69E-46 |
MS.gene058494 | MS.gene88886 | 0.861819 | 7.85E-64 | -1.69E-46 |
MS.gene058496 | MS.gene88886 | 0.813581 | 2.38E-51 | -1.69E-46 |
MS.gene058544 | MS.gene88886 | -0.802345 | 5.86E-49 | -1.69E-46 |
MS.gene058603 | MS.gene88886 | 0.806492 | 8.01E-50 | -1.69E-46 |
MS.gene058628 | MS.gene88886 | 0.865964 | 4.03E-65 | -1.69E-46 |
MS.gene058629 | MS.gene88886 | 0.86151 | 9.75E-64 | -1.69E-46 |
MS.gene058630 | MS.gene88886 | 0.861955 | 7.13E-64 | -1.69E-46 |
MS.gene058840 | MS.gene88886 | 0.80489 | 1.74E-49 | -1.69E-46 |
MS.gene05884 | MS.gene88886 | 0.805927 | 1.05E-49 | -1.69E-46 |
MS.gene059022 | MS.gene88886 | -0.841448 | 4.72E-58 | -1.69E-46 |
MS.gene059037 | MS.gene88886 | 0.815636 | 8.35E-52 | -1.69E-46 |
MS.gene059045 | MS.gene88886 | 0.842921 | 1.92E-58 | -1.69E-46 |
MS.gene059223 | MS.gene88886 | 0.85154 | 8.31E-61 | -1.69E-46 |
MS.gene059690 | MS.gene88886 | 0.877971 | 4.09E-69 | -1.69E-46 |
MS.gene059691 | MS.gene88886 | 0.855836 | 4.83E-62 | -1.69E-46 |
MS.gene059694 | MS.gene88886 | 0.883919 | 2.98E-71 | -1.69E-46 |
MS.gene059697 | MS.gene88886 | 0.887087 | 1.94E-72 | -1.69E-46 |
MS.gene059865 | MS.gene88886 | -0.847387 | 1.19E-59 | -1.69E-46 |
MS.gene059916 | MS.gene88886 | 0.816244 | 6.11E-52 | -1.69E-46 |
MS.gene060595 | MS.gene88886 | 0.818983 | 1.47E-52 | -1.69E-46 |
MS.gene060762 | MS.gene88886 | -0.808999 | 2.35E-50 | -1.69E-46 |
MS.gene060778 | MS.gene88886 | -0.816756 | 4.69E-52 | -1.69E-46 |
MS.gene06077 | MS.gene88886 | -0.851749 | 7.25E-61 | -1.69E-46 |
MS.gene060982 | MS.gene88886 | -0.806339 | 8.63E-50 | -1.69E-46 |
MS.gene061044 | MS.gene88886 | 0.807942 | 3.95E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88886.t1 | MTR_1g097935 | 99.743 | 389 | 1 | 0 | 1 | 389 | 1 | 389 | 0.0 | 803 |
MS.gene88886.t1 | MTR_1g097910 | 99.486 | 389 | 2 | 0 | 1 | 389 | 1 | 389 | 0.0 | 803 |
MS.gene88886.t1 | MTR_1g098140 | 99.486 | 389 | 2 | 0 | 1 | 389 | 1 | 389 | 0.0 | 801 |
MS.gene88886.t1 | MTR_7g016800 | 98.201 | 389 | 7 | 0 | 1 | 389 | 1 | 389 | 0.0 | 791 |
MS.gene88886.t1 | MTR_7g016720 | 98.458 | 389 | 6 | 0 | 1 | 389 | 1 | 389 | 0.0 | 791 |
MS.gene88886.t1 | MTR_7g016820 | 98.201 | 389 | 7 | 0 | 1 | 389 | 1 | 389 | 0.0 | 791 |
MS.gene88886.t1 | MTR_5g007730 | 97.686 | 389 | 9 | 0 | 1 | 389 | 1 | 389 | 0.0 | 791 |
MS.gene88886.t1 | MTR_7g016700 | 97.686 | 389 | 9 | 0 | 1 | 389 | 1 | 389 | 0.0 | 790 |
MS.gene88886.t1 | MTR_7g016780 | 97.686 | 389 | 9 | 0 | 1 | 389 | 1 | 389 | 0.0 | 788 |
MS.gene88886.t1 | MTR_5g007760 | 97.429 | 389 | 10 | 0 | 1 | 389 | 1 | 389 | 0.0 | 788 |
MS.gene88886.t1 | MTR_5g007713 | 96.401 | 389 | 14 | 0 | 1 | 389 | 1 | 389 | 0.0 | 781 |
MS.gene88886.t1 | MTR_5g007717 | 96.144 | 389 | 15 | 0 | 1 | 389 | 1 | 389 | 0.0 | 780 |
MS.gene88886.t1 | MTR_3g083920 | 90.722 | 388 | 36 | 0 | 1 | 388 | 1 | 388 | 0.0 | 748 |
MS.gene88886.t1 | MTR_3g083910 | 89.948 | 388 | 39 | 0 | 1 | 388 | 1 | 388 | 0.0 | 745 |
MS.gene88886.t1 | MTR_2g058470 | 87.147 | 389 | 50 | 0 | 1 | 389 | 1 | 389 | 0.0 | 714 |
MS.gene88886.t1 | MTR_3g086260 | 81.701 | 388 | 71 | 0 | 1 | 388 | 1 | 388 | 0.0 | 676 |
MS.gene88886.t1 | MTR_7g084300 | 80.206 | 389 | 77 | 0 | 1 | 389 | 1 | 389 | 0.0 | 671 |
MS.gene88886.t1 | MTR_7g113405 | 96.040 | 303 | 12 | 0 | 87 | 389 | 1 | 303 | 0.0 | 598 |
MS.gene88886.t1 | MTR_3g088675 | 66.067 | 389 | 132 | 0 | 1 | 389 | 1 | 389 | 0.0 | 572 |
MS.gene88886.t1 | MTR_5g007740 | 80.061 | 326 | 65 | 0 | 64 | 389 | 1 | 326 | 0.0 | 547 |
MS.gene88886.t1 | MTR_5g007723 | 67.910 | 402 | 80 | 5 | 7 | 389 | 27 | 398 | 0.0 | 531 |
MS.gene88886.t1 | MTR_5g007770 | 77.667 | 300 | 34 | 2 | 70 | 369 | 1 | 267 | 9.84e-167 | 467 |
MS.gene88886.t1 | MTR_3g088670 | 48.974 | 390 | 185 | 6 | 10 | 388 | 2 | 388 | 7.05e-130 | 379 |
MS.gene88886.t1 | MTR_4g075560 | 42.408 | 382 | 213 | 4 | 9 | 387 | 11 | 388 | 6.72e-102 | 307 |
MS.gene88886.t1 | MTR_4g078730 | 37.534 | 373 | 226 | 2 | 15 | 387 | 24 | 389 | 3.35e-92 | 282 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88886.t1 | AT5G13930 | 82.474 | 388 | 67 | 1 | 3 | 389 | 8 | 395 | 0.0 | 672 |
MS.gene88886.t1 | AT4G34850 | 40.584 | 377 | 220 | 3 | 15 | 389 | 18 | 392 | 7.23e-96 | 292 |
MS.gene88886.t1 | AT4G00040 | 40.318 | 377 | 215 | 5 | 14 | 387 | 16 | 385 | 3.76e-94 | 287 |
MS.gene88886.t1 | AT1G02050 | 39.628 | 376 | 217 | 5 | 15 | 387 | 24 | 392 | 2.76e-86 | 267 |
MS.gene88886.t1 | AT4G34850 | 40.000 | 320 | 189 | 2 | 72 | 389 | 1 | 319 | 1.28e-80 | 250 |
Find 88 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAATAGGTTTCTCAATTTC+TGG | 0.101255 | 1.1:-70436503 | None:intergenic |
TGCAGTTCCAATGGCTAAAA+TGG | 0.225262 | 1.1:-70435746 | None:intergenic |
CTGATTACAATTCAATCTTT+TGG | 0.254027 | 1.1:+70436693 | MS.gene88886:CDS |
TACCAACAAGGTTGCTTTGC+AGG | 0.283953 | 1.1:+70436293 | MS.gene88886:CDS |
CTTTCAAAATCTCCTCTGTT+AGG | 0.305425 | 1.1:-70436028 | None:intergenic |
TCAATGGCCCCTTCACTATC+TGG | 0.309674 | 1.1:-70436557 | None:intergenic |
CTTGTTGGACAAGCACTATT+TGG | 0.314421 | 1.1:+70436440 | MS.gene88886:CDS |
AGAGAAGTGCTCAGTGAATA+TGG | 0.317887 | 1.1:+70436797 | MS.gene88886:CDS |
GCTTCGTTTGGCTAAAGATT+TGG | 0.342769 | 1.1:+70436325 | MS.gene88886:CDS |
GTCTTCGTCCATACGTAAAA+AGG | 0.344471 | 1.1:+70436261 | MS.gene88886:CDS |
TCTACTTGATCTAGAATTGC+AGG | 0.346751 | 1.1:-70436734 | None:intergenic |
TGAATACATGGCACCTTCAT+TGG | 0.347646 | 1.1:+70436067 | MS.gene88886:CDS |
GGTTTCTCAATTTCTGGTAC+TGG | 0.362281 | 1.1:-70436497 | None:intergenic |
AAGTGAGTAATCTTTGACTT+TGG | 0.381814 | 1.1:-70436173 | None:intergenic |
AGGAGGCACGGTGCTTCGTT+TGG | 0.381968 | 1.1:+70436313 | MS.gene88886:CDS |
TACCAACTCACAAAACTCTT+AGG | 0.382277 | 1.1:+70436239 | MS.gene88886:CDS |
CCAATGGCTAAAATGGTTGC+AGG | 0.393820 | 1.1:-70435739 | None:intergenic |
CACCTTCTTAAAGATGTTCC+CGG | 0.401953 | 1.1:+70436611 | MS.gene88886:CDS |
ATATTCACTGAGCACTTCTC+TGG | 0.410278 | 1.1:-70436795 | None:intergenic |
GGAGCTGCTGCACTGATTGT+TGG | 0.411529 | 1.1:+70436467 | MS.gene88886:CDS |
ACTCACTTGGACAGCCTTGT+TGG | 0.426712 | 1.1:+70436425 | MS.gene88886:CDS |
ACGGGAGAAGGACTTGAGTT+TGG | 0.429869 | 1.1:+70436896 | MS.gene88886:CDS |
AGTGAAAGCTATAAAAGAAT+GGG | 0.430526 | 1.1:+70436145 | MS.gene88886:CDS |
GATAGTGAAGGGGCCATTGA+TGG | 0.440309 | 1.1:+70436560 | MS.gene88886:CDS |
CTTTGTTCAACACAGTTGGC+TGG | 0.449203 | 1.1:-70435772 | None:intergenic |
GTCACTGCAGTTACATTTCG+CGG | 0.450823 | 1.1:+70436392 | MS.gene88886:CDS |
CTGAAATTCGCACTGCTCAA+AGG | 0.456355 | 1.1:+70435707 | MS.gene88886:CDS |
GCGCAAAACAACGGTTTCAA+TGG | 0.461439 | 1.1:-70436948 | None:intergenic |
TGAAATTCGCACTGCTCAAA+GGG | 0.462102 | 1.1:+70435708 | MS.gene88886:CDS |
TTCACGAAGGTGACCATCAA+TGG | 0.470504 | 1.1:-70436573 | None:intergenic |
GCAAGACATGGTGGTGGTAG+AGG | 0.474656 | 1.1:+70436097 | MS.gene88886:CDS |
CTCCTGCAAAGCAACCTTGT+TGG | 0.478750 | 1.1:-70436295 | None:intergenic |
GTGAGTTGGTAATCAGCTCC+AGG | 0.479782 | 1.1:-70436227 | None:intergenic |
CAGTGAAAGCTATAAAAGAA+TGG | 0.482912 | 1.1:+70436144 | MS.gene88886:CDS |
CTGTCCAAGTGAGTATCACT+AGG | 0.483602 | 1.1:-70436416 | None:intergenic |
AAAGAACATCAATAAAGCAT+TGG | 0.485622 | 1.1:+70436643 | MS.gene88886:CDS |
GATGGTCACCTTCGTGAAGC+TGG | 0.486168 | 1.1:+70436578 | MS.gene88886:CDS |
TCTAGAATTGCAGGTCCACC+AGG | 0.500155 | 1.1:-70436725 | None:intergenic |
TTGCGCAGTGTCGCTATATG+AGG | 0.502378 | 1.1:+70436965 | MS.gene88886:CDS |
GGCTGGATTTGCAGTTCCAA+TGG | 0.506046 | 1.1:-70435755 | None:intergenic |
TGGCACCTTCATTGGATGCT+AGG | 0.506096 | 1.1:+70436075 | MS.gene88886:CDS |
GATGTTCTTTGAAACAATCC+CGG | 0.506109 | 1.1:-70436630 | None:intergenic |
TTCACTGAGCACTTCTCTGG+TGG | 0.523654 | 1.1:-70436792 | None:intergenic |
GGACTGAAGACCACGGGAGA+AGG | 0.524843 | 1.1:+70436884 | MS.gene88886:CDS |
TCCTAGTGTTTGTGAATACA+TGG | 0.528394 | 1.1:+70436055 | MS.gene88886:CDS |
CGGCCCTAGTGATACTCACT+TGG | 0.529910 | 1.1:+70436412 | MS.gene88886:CDS |
CATCAATAAAGCATTGGTTG+AGG | 0.540608 | 1.1:+70436649 | MS.gene88886:CDS |
ACCTTCTTAAAGATGTTCCC+GGG | 0.543150 | 1.1:+70436612 | MS.gene88886:CDS |
ATGTTCTTTGAAACAATCCC+GGG | 0.547822 | 1.1:-70436629 | None:intergenic |
AGGTTGCTTTGCAGGAGGCA+CGG | 0.555669 | 1.1:+70436301 | MS.gene88886:CDS |
AGAAAGAAGTCAGCTCAAGA+TGG | 0.559235 | 1.1:+70436863 | MS.gene88886:CDS |
GGACAAGCACTATTTGGAGA+TGG | 0.563405 | 1.1:+70436446 | MS.gene88886:CDS |
GCAGCCTCCTTGCCTAGTCT+AGG | 0.568229 | 1.1:-70436122 | None:intergenic |
TCCCGGGAACATCTTTAAGA+AGG | 0.569831 | 1.1:-70436613 | None:intergenic |
AGGCATGTCTACACCACTTG+TGG | 0.569916 | 1.1:-70436207 | None:intergenic |
ACAAGTGGTGTAGACATGCC+TGG | 0.572074 | 1.1:+70436209 | MS.gene88886:CDS |
CAAATAGTGCTTGTCCAACA+AGG | 0.572762 | 1.1:-70436439 | None:intergenic |
AGCGACACTGCGCAAAACAA+CGG | 0.575560 | 1.1:-70436957 | None:intergenic |
CGCACTGCTCAAAGGGCAGA+AGG | 0.577617 | 1.1:+70435715 | MS.gene88886:CDS |
TCTTGCCTAGCATCCAATGA+AGG | 0.579296 | 1.1:-70436080 | None:intergenic |
GTGATAAATCTATGATCAAG+AGG | 0.584564 | 1.1:+70435994 | MS.gene88886:CDS |
CAATTGCTCCAGATAGTGAA+GGG | 0.593639 | 1.1:+70436549 | MS.gene88886:CDS |
TTGATCGTTTGCACCACAAG+TGG | 0.595788 | 1.1:+70436194 | MS.gene88886:CDS |
AGAGGTACCTAGACTAGGCA+AGG | 0.600359 | 1.1:+70436115 | MS.gene88886:CDS |
CAAGATGGACTGAAGACCAC+GGG | 0.604373 | 1.1:+70436878 | MS.gene88886:CDS |
ACAATTGCTCCAGATAGTGA+AGG | 0.608112 | 1.1:+70436548 | MS.gene88886:CDS |
TGTGCTTTGTTCAACACAGT+TGG | 0.612931 | 1.1:-70435776 | None:intergenic |
TTGTAATCAGAAATTCCCAA+TGG | 0.619803 | 1.1:-70436680 | None:intergenic |
CAACAAAGGTGCTCGTGTGT+TGG | 0.620198 | 1.1:+70436355 | MS.gene88886:CDS |
GTGGTAGAGGTACCTAGACT+AGG | 0.623290 | 1.1:+70436110 | MS.gene88886:CDS |
CAACAAGGTTGCTTTGCAGG+AGG | 0.634702 | 1.1:+70436296 | MS.gene88886:CDS |
AAACTCAAGTCCTTCTCCCG+TGG | 0.634843 | 1.1:-70436894 | None:intergenic |
ATTGGATGCTAGGCAAGACA+TGG | 0.648366 | 1.1:+70436085 | MS.gene88886:CDS |
CAATGGCTAAAATGGTTGCA+GGG | 0.655281 | 1.1:-70435738 | None:intergenic |
GTGAAAGCTATAAAAGAATG+GGG | 0.667253 | 1.1:+70436146 | MS.gene88886:CDS |
GAGATACATGTACCTAACAG+AGG | 0.667740 | 1.1:+70436016 | MS.gene88886:CDS |
TCAAGATGGACTGAAGACCA+CGG | 0.668535 | 1.1:+70436877 | MS.gene88886:CDS |
TGTCCAAGTGAGTATCACTA+GGG | 0.674277 | 1.1:-70436415 | None:intergenic |
ACGGTTTCAATGGTAAGACC+CGG | 0.675121 | 1.1:-70436938 | None:intergenic |
TGCTAGGCAAGACATGGTGG+TGG | 0.675229 | 1.1:+70436091 | MS.gene88886:CDS |
GCCATGTATTCACAAACACT+AGG | 0.680230 | 1.1:-70436056 | None:intergenic |
GATTTGGCTGAGAACAACAA+AGG | 0.683242 | 1.1:+70436341 | MS.gene88886:CDS |
GGTACCTAGACTAGGCAAGG+AGG | 0.684618 | 1.1:+70436118 | MS.gene88886:CDS |
ATGTTAGTCCAGCTTCACGA+AGG | 0.698828 | 1.1:-70436586 | None:intergenic |
AATTGCTCCAGATAGTGAAG+GGG | 0.700404 | 1.1:+70436550 | MS.gene88886:CDS |
AGGTATATGATGTACCAACA+AGG | 0.704257 | 1.1:+70436281 | MS.gene88886:CDS |
CTAGAATTGCAGGTCCACCA+GGG | 0.711261 | 1.1:-70436724 | None:intergenic |
GGATGCTAGGCAAGACATGG+TGG | 0.737305 | 1.1:+70436088 | MS.gene88886:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GATAGCAAAATATATTTAAA+TGG | - | chr1.1:70435909-70435928 | None:intergenic | 15.0% |
!!! | ATATTTTGCTATCTTTACAT+TGG | + | chr1.1:70435916-70435935 | MS.gene88886:intron | 20.0% |
!!! | ATTTAAATGGAAAGTATCTA+AGG | - | chr1.1:70435896-70435915 | None:intergenic | 20.0% |
! | AAAATAGGTTTCTCAATTTC+TGG | - | chr1.1:70436506-70436525 | None:intergenic | 25.0% |
! | AAAGAACATCAATAAAGCAT+TGG | + | chr1.1:70436643-70436662 | MS.gene88886:CDS | 25.0% |
! | AGTGAAAGCTATAAAAGAAT+GGG | + | chr1.1:70436145-70436164 | MS.gene88886:CDS | 25.0% |
!! | ATCATATACCTTTTTACGTA+TGG | - | chr1.1:70436272-70436291 | None:intergenic | 25.0% |
!! | CTGATTACAATTCAATCTTT+TGG | + | chr1.1:70436693-70436712 | MS.gene88886:CDS | 25.0% |
!!! | GTGATTTTAAAGTAGAAATC+AGG | - | chr1.1:70435805-70435824 | None:intergenic | 25.0% |
AAAAATACTTACACATGCGT+TGG | - | chr1.1:70435864-70435883 | None:intergenic | 30.0% | |
ATCATAGATTTATCACCTGA+AGG | - | chr1.1:70435990-70436009 | None:intergenic | 30.0% | |
CAGTGAAAGCTATAAAAGAA+TGG | + | chr1.1:70436144-70436163 | MS.gene88886:CDS | 30.0% | |
GATATTAGTTCAGCAAACTT+AGG | - | chr1.1:70435952-70435971 | None:intergenic | 30.0% | |
GTGAAAGCTATAAAAGAATG+GGG | + | chr1.1:70436146-70436165 | MS.gene88886:CDS | 30.0% | |
GTGATAAATCTATGATCAAG+AGG | + | chr1.1:70435994-70436013 | MS.gene88886:CDS | 30.0% | |
TCATAGATTTATCACCTGAA+GGG | - | chr1.1:70435989-70436008 | None:intergenic | 30.0% | |
TTGTAATCAGAAATTCCCAA+TGG | - | chr1.1:70436683-70436702 | None:intergenic | 30.0% | |
! | AAGTGAGTAATCTTTGACTT+TGG | - | chr1.1:70436176-70436195 | None:intergenic | 30.0% |
! | ATCTTTTCATAATTCCCTTC+AGG | + | chr1.1:70435972-70435991 | MS.gene88886:intron | 30.0% |
!! | TTTCATCTTTTCAGGCTTTA+AGG | - | chr1.1:70436771-70436790 | None:intergenic | 30.0% |
!!! | AACCTATTTTTGAGATGGTT+TGG | + | chr1.1:70436516-70436535 | MS.gene88886:CDS | 30.0% |
!!! | CTTGAGTTTGGTGTTTTATT+TGG | + | chr1.1:70436908-70436927 | MS.gene88886:CDS | 30.0% |
!!! | TGAGAAACCTATTTTTGAGA+TGG | + | chr1.1:70436511-70436530 | MS.gene88886:CDS | 30.0% |
!!! | TTTGGTGTTTTATTTGGCTT+TGG | + | chr1.1:70436914-70436933 | MS.gene88886:CDS | 30.0% |
AGGTATATGATGTACCAACA+AGG | + | chr1.1:70436281-70436300 | MS.gene88886:CDS | 35.0% | |
CTTTCAAAATCTCCTCTGTT+AGG | - | chr1.1:70436031-70436050 | None:intergenic | 35.0% | |
GTCCAAACCATCTCAAAAAT+AGG | - | chr1.1:70436521-70436540 | None:intergenic | 35.0% | |
TACCAACTCACAAAACTCTT+AGG | + | chr1.1:70436239-70436258 | MS.gene88886:CDS | 35.0% | |
TCCTAGTGTTTGTGAATACA+TGG | + | chr1.1:70436055-70436074 | MS.gene88886:CDS | 35.0% | |
! | TCTACTTGATCTAGAATTGC+AGG | - | chr1.1:70436737-70436756 | None:intergenic | 35.0% |
!! | ATGGAAAGTATCTAAGGTAG+CGG | - | chr1.1:70435890-70435909 | None:intergenic | 35.0% |
!! | ATGTTCTTTGAAACAATCCC+GGG | - | chr1.1:70436632-70436651 | None:intergenic | 35.0% |
!! | CATCAATAAAGCATTGGTTG+AGG | + | chr1.1:70436649-70436668 | MS.gene88886:CDS | 35.0% |
!! | GATGTTCTTTGAAACAATCC+CGG | - | chr1.1:70436633-70436652 | None:intergenic | 35.0% |
!!! | TGTTTTATTTGGCTTTGGAC+CGG | + | chr1.1:70436919-70436938 | MS.gene88886:CDS | 35.0% |
AATTGCTCCAGATAGTGAAG+GGG | + | chr1.1:70436550-70436569 | MS.gene88886:CDS | 40.0% | |
ACAATTGCTCCAGATAGTGA+AGG | + | chr1.1:70436548-70436567 | MS.gene88886:CDS | 40.0% | |
ACCTTCTTAAAGATGTTCCC+GGG | + | chr1.1:70436612-70436631 | MS.gene88886:CDS | 40.0% | |
AGAAAGAAGTCAGCTCAAGA+TGG | + | chr1.1:70436863-70436882 | MS.gene88886:CDS | 40.0% | |
ATATTCACTGAGCACTTCTC+TGG | - | chr1.1:70436798-70436817 | None:intergenic | 40.0% | |
CAAATAGTGCTTGTCCAACA+AGG | - | chr1.1:70436442-70436461 | None:intergenic | 40.0% | |
CAATGGCTAAAATGGTTGCA+GGG | - | chr1.1:70435741-70435760 | None:intergenic | 40.0% | |
CAATTGCTCCAGATAGTGAA+GGG | + | chr1.1:70436549-70436568 | MS.gene88886:CDS | 40.0% | |
CACCTTCTTAAAGATGTTCC+CGG | + | chr1.1:70436611-70436630 | MS.gene88886:CDS | 40.0% | |
CTTGTTGGACAAGCACTATT+TGG | + | chr1.1:70436440-70436459 | MS.gene88886:CDS | 40.0% | |
GAGATACATGTACCTAACAG+AGG | + | chr1.1:70436016-70436035 | MS.gene88886:CDS | 40.0% | |
GATTTGGCTGAGAACAACAA+AGG | + | chr1.1:70436341-70436360 | MS.gene88886:CDS | 40.0% | |
GCCATGTATTCACAAACACT+AGG | - | chr1.1:70436059-70436078 | None:intergenic | 40.0% | |
GCTTCGTTTGGCTAAAGATT+TGG | + | chr1.1:70436325-70436344 | MS.gene88886:CDS | 40.0% | |
GTCTTCGTCCATACGTAAAA+AGG | + | chr1.1:70436261-70436280 | MS.gene88886:CDS | 40.0% | |
TGAAATTCGCACTGCTCAAA+GGG | + | chr1.1:70435708-70435727 | MS.gene88886:CDS | 40.0% | |
TGAATACATGGCACCTTCAT+TGG | + | chr1.1:70436067-70436086 | MS.gene88886:CDS | 40.0% | |
TGCAGTTCCAATGGCTAAAA+TGG | - | chr1.1:70435749-70435768 | None:intergenic | 40.0% | |
TGTCCAAGTGAGTATCACTA+GGG | - | chr1.1:70436418-70436437 | None:intergenic | 40.0% | |
! | GTTGAGGCTTTTGAACCATT+GGG | + | chr1.1:70436665-70436684 | MS.gene88886:CDS | 40.0% |
! | TGTGCTTTGTTCAACACAGT+TGG | - | chr1.1:70435779-70435798 | None:intergenic | 40.0% |
!! | AGAGAAGTGCTCAGTGAATA+TGG | + | chr1.1:70436797-70436816 | MS.gene88886:CDS | 40.0% |
!! | GACCTAAGAGTTTTGTGAGT+TGG | - | chr1.1:70436244-70436263 | None:intergenic | 40.0% |
!! | GGTTTCTCAATTTCTGGTAC+TGG | - | chr1.1:70436500-70436519 | None:intergenic | 40.0% |
!!! | GTTTTATTTGGCTTTGGACC+GGG | + | chr1.1:70436920-70436939 | MS.gene88886:CDS | 40.0% |
ACGGTTTCAATGGTAAGACC+CGG | - | chr1.1:70436941-70436960 | None:intergenic | 45.0% | |
ATGTTAGTCCAGCTTCACGA+AGG | - | chr1.1:70436589-70436608 | None:intergenic | 45.0% | |
ATTGGATGCTAGGCAAGACA+TGG | + | chr1.1:70436085-70436104 | MS.gene88886:CDS | 45.0% | |
CCAATGGCTAAAATGGTTGC+AGG | - | chr1.1:70435742-70435761 | None:intergenic | 45.0% | |
CTGAAATTCGCACTGCTCAA+AGG | + | chr1.1:70435707-70435726 | MS.gene88886:CDS | 45.0% | |
CTGTCCAAGTGAGTATCACT+AGG | - | chr1.1:70436419-70436438 | None:intergenic | 45.0% | |
CTTTGTTCAACACAGTTGGC+TGG | - | chr1.1:70435775-70435794 | None:intergenic | 45.0% | |
GCGCAAAACAACGGTTTCAA+TGG | - | chr1.1:70436951-70436970 | None:intergenic | 45.0% | |
GGACAAGCACTATTTGGAGA+TGG | + | chr1.1:70436446-70436465 | MS.gene88886:CDS | 45.0% | |
GTCACTGCAGTTACATTTCG+CGG | + | chr1.1:70436392-70436411 | MS.gene88886:CDS | 45.0% | |
TCTTGCCTAGCATCCAATGA+AGG | - | chr1.1:70436083-70436102 | None:intergenic | 45.0% | |
TTCACGAAGGTGACCATCAA+TGG | - | chr1.1:70436576-70436595 | None:intergenic | 45.0% | |
TTGATCGTTTGCACCACAAG+TGG | + | chr1.1:70436194-70436213 | MS.gene88886:CDS | 45.0% | |
! | ATCTTTTGGATTGCACACCC+TGG | + | chr1.1:70436707-70436726 | MS.gene88886:CDS | 45.0% |
! | CTGGTGGCTTTCATCTTTTC+AGG | - | chr1.1:70436779-70436798 | None:intergenic | 45.0% |
! | GGTTGAGGCTTTTGAACCAT+TGG | + | chr1.1:70436664-70436683 | MS.gene88886:CDS | 45.0% |
! | TACCAACAAGGTTGCTTTGC+AGG | + | chr1.1:70436293-70436312 | MS.gene88886:CDS | 45.0% |
! | TCCCGGGAACATCTTTAAGA+AGG | - | chr1.1:70436616-70436635 | None:intergenic | 45.0% |
!! | CCTGCAACCATTTTAGCCAT+TGG | + | chr1.1:70435739-70435758 | MS.gene88886:CDS | 45.0% |
!! | TCAAGATGGACTGAAGACCA+CGG | + | chr1.1:70436877-70436896 | MS.gene88886:CDS | 45.0% |
AAACTCAAGTCCTTCTCCCG+TGG | - | chr1.1:70436897-70436916 | None:intergenic | 50.0% | |
ACAAGTGGTGTAGACATGCC+TGG | + | chr1.1:70436209-70436228 | MS.gene88886:CDS | 50.0% | |
ACGGGAGAAGGACTTGAGTT+TGG | + | chr1.1:70436896-70436915 | MS.gene88886:CDS | 50.0% | |
AGCGACACTGCGCAAAACAA+CGG | - | chr1.1:70436960-70436979 | None:intergenic | 50.0% | |
AGGCATGTCTACACCACTTG+TGG | - | chr1.1:70436210-70436229 | None:intergenic | 50.0% | |
CTAGAATTGCAGGTCCACCA+GGG | - | chr1.1:70436727-70436746 | None:intergenic | 50.0% | |
CTCCTGCAAAGCAACCTTGT+TGG | - | chr1.1:70436298-70436317 | None:intergenic | 50.0% | |
GATAGTGAAGGGGCCATTGA+TGG | + | chr1.1:70436560-70436579 | MS.gene88886:CDS | 50.0% | |
GGCTGGATTTGCAGTTCCAA+TGG | - | chr1.1:70435758-70435777 | None:intergenic | 50.0% | |
TCAATGGCCCCTTCACTATC+TGG | - | chr1.1:70436560-70436579 | None:intergenic | 50.0% | |
TGGCACCTTCATTGGATGCT+AGG | + | chr1.1:70436075-70436094 | MS.gene88886:CDS | 50.0% | |
TTCACTGAGCACTTCTCTGG+TGG | - | chr1.1:70436795-70436814 | None:intergenic | 50.0% | |
! | ACTCACTTGGACAGCCTTGT+TGG | + | chr1.1:70436425-70436444 | MS.gene88886:CDS | 50.0% |
! | CAACAAGGTTGCTTTGCAGG+AGG | + | chr1.1:70436296-70436315 | MS.gene88886:CDS | 50.0% |
! | TCTAGAATTGCAGGTCCACC+AGG | - | chr1.1:70436728-70436747 | None:intergenic | 50.0% |
! | TTTTGGATTGCACACCCTGG+TGG | + | chr1.1:70436710-70436729 | MS.gene88886:CDS | 50.0% |
!! | AGAGGTACCTAGACTAGGCA+AGG | + | chr1.1:70436115-70436134 | MS.gene88886:CDS | 50.0% |
!! | CAACAAAGGTGCTCGTGTGT+TGG | + | chr1.1:70436355-70436374 | MS.gene88886:CDS | 50.0% |
!! | CAAGATGGACTGAAGACCAC+GGG | + | chr1.1:70436878-70436897 | MS.gene88886:CDS | 50.0% |
!! | GTGAGTTGGTAATCAGCTCC+AGG | - | chr1.1:70436230-70436249 | None:intergenic | 50.0% |
!! | GTGGTAGAGGTACCTAGACT+AGG | + | chr1.1:70436110-70436129 | MS.gene88886:CDS | 50.0% |
CGGCCCTAGTGATACTCACT+TGG | + | chr1.1:70436412-70436431 | MS.gene88886:CDS | 55.0% | |
GATGGTCACCTTCGTGAAGC+TGG | + | chr1.1:70436578-70436597 | MS.gene88886:CDS | 55.0% | |
GGATGCTAGGCAAGACATGG+TGG | + | chr1.1:70436088-70436107 | MS.gene88886:CDS | 55.0% | |
GGTACCTAGACTAGGCAAGG+AGG | + | chr1.1:70436118-70436137 | MS.gene88886:CDS | 55.0% | |
TGCTAGGCAAGACATGGTGG+TGG | + | chr1.1:70436091-70436110 | MS.gene88886:CDS | 55.0% | |
! | AGGTTGCTTTGCAGGAGGCA+CGG | + | chr1.1:70436301-70436320 | MS.gene88886:CDS | 55.0% |
!! | GCAAGACATGGTGGTGGTAG+AGG | + | chr1.1:70436097-70436116 | MS.gene88886:CDS | 55.0% |
!! | GGAGCTGCTGCACTGATTGT+TGG | + | chr1.1:70436467-70436486 | MS.gene88886:CDS | 55.0% |
CGCACTGCTCAAAGGGCAGA+AGG | + | chr1.1:70435715-70435734 | MS.gene88886:CDS | 60.0% | |
GCAGCCTCCTTGCCTAGTCT+AGG | - | chr1.1:70436125-70436144 | None:intergenic | 60.0% | |
GGACTGAAGACCACGGGAGA+AGG | + | chr1.1:70436884-70436903 | MS.gene88886:CDS | 60.0% | |
! | AGGAGGCACGGTGCTTCGTT+TGG | + | chr1.1:70436313-70436332 | MS.gene88886:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 70435694 | 70436985 | 70435694 | ID=MS.gene88886 |
chr1.1 | mRNA | 70435694 | 70436985 | 70435694 | ID=MS.gene88886.t1;Parent=MS.gene88886 |
chr1.1 | exon | 70435694 | 70435871 | 70435694 | ID=MS.gene88886.t1.exon1;Parent=MS.gene88886.t1 |
chr1.1 | CDS | 70435694 | 70435871 | 70435694 | ID=cds.MS.gene88886.t1;Parent=MS.gene88886.t1 |
chr1.1 | exon | 70435994 | 70436985 | 70435994 | ID=MS.gene88886.t1.exon2;Parent=MS.gene88886.t1 |
chr1.1 | CDS | 70435994 | 70436985 | 70435994 | ID=cds.MS.gene88886.t1;Parent=MS.gene88886.t1 |
Gene Sequence |
Protein sequence |