Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97784.t1 | XP_013447784.1 | 98.4 | 502 | 8 | 0 | 36 | 537 | 39 | 540 | 3.90E-265 | 923.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97784.t1 | Q53P98 | 56.3 | 487 | 210 | 3 | 38 | 523 | 39 | 523 | 1.6e-158 | 560.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97784.t1 | A0A072TVJ2 | 98.4 | 502 | 8 | 0 | 36 | 537 | 39 | 540 | 2.8e-265 | 923.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene97784 | 0.82902 | 6.50E-55 | -1.69E-46 |
| MS.gene049159 | MS.gene97784 | 0.813867 | 2.06E-51 | -1.69E-46 |
| MS.gene049254 | MS.gene97784 | 0.827708 | 1.35E-54 | -1.69E-46 |
| MS.gene049404 | MS.gene97784 | 0.867673 | 1.15E-65 | -1.69E-46 |
| MS.gene049711 | MS.gene97784 | 0.826603 | 2.48E-54 | -1.69E-46 |
| MS.gene04976 | MS.gene97784 | 0.801607 | 8.31E-49 | -1.69E-46 |
| MS.gene049807 | MS.gene97784 | 0.809656 | 1.70E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene97784 | 0.815885 | 7.35E-52 | -1.69E-46 |
| MS.gene05016 | MS.gene97784 | 0.830242 | 3.28E-55 | -1.69E-46 |
| MS.gene050237 | MS.gene97784 | 0.805092 | 1.58E-49 | -1.69E-46 |
| MS.gene050241 | MS.gene97784 | 0.805492 | 1.30E-49 | -1.69E-46 |
| MS.gene050273 | MS.gene97784 | 0.841979 | 3.42E-58 | -1.69E-46 |
| MS.gene050384 | MS.gene97784 | 0.830211 | 3.34E-55 | -1.69E-46 |
| MS.gene050386 | MS.gene97784 | 0.813167 | 2.94E-51 | -1.69E-46 |
| MS.gene050551 | MS.gene97784 | 0.80496 | 1.68E-49 | -1.69E-46 |
| MS.gene050559 | MS.gene97784 | 0.832087 | 1.15E-55 | -1.69E-46 |
| MS.gene050561 | MS.gene97784 | 0.831155 | 1.96E-55 | -1.69E-46 |
| MS.gene050562 | MS.gene97784 | 0.819554 | 1.09E-52 | -1.69E-46 |
| MS.gene050646 | MS.gene97784 | 0.817729 | 2.84E-52 | -1.69E-46 |
| MS.gene050689 | MS.gene97784 | 0.83134 | 1.76E-55 | -1.69E-46 |
| MS.gene050807 | MS.gene97784 | 0.843129 | 1.69E-58 | -1.69E-46 |
| MS.gene051102 | MS.gene97784 | 0.826073 | 3.31E-54 | -1.69E-46 |
| MS.gene051198 | MS.gene97784 | 0.875042 | 4.21E-68 | -1.69E-46 |
| MS.gene051279 | MS.gene97784 | 0.835968 | 1.23E-56 | -1.69E-46 |
| MS.gene051343 | MS.gene97784 | 0.801104 | 1.05E-48 | -1.69E-46 |
| MS.gene051628 | MS.gene97784 | 0.815442 | 9.23E-52 | -1.69E-46 |
| MS.gene051744 | MS.gene97784 | 0.848179 | 7.23E-60 | -1.69E-46 |
| MS.gene051800 | MS.gene97784 | 0.829261 | 5.68E-55 | -1.69E-46 |
| MS.gene052036 | MS.gene97784 | 0.837869 | 4.03E-57 | -1.69E-46 |
| MS.gene052037 | MS.gene97784 | 0.813799 | 2.13E-51 | -1.69E-46 |
| MS.gene052239 | MS.gene97784 | -0.86988 | 2.22E-66 | -1.69E-46 |
| MS.gene052242 | MS.gene97784 | -0.813362 | 2.66E-51 | -1.69E-46 |
| MS.gene052307 | MS.gene97784 | 0.825134 | 5.53E-54 | -1.69E-46 |
| MS.gene052514 | MS.gene97784 | 0.801433 | 9.03E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene97784 | 0.865713 | 4.84E-65 | -1.69E-46 |
| MS.gene052609 | MS.gene97784 | 0.846147 | 2.61E-59 | -1.69E-46 |
| MS.gene052611 | MS.gene97784 | 0.812571 | 3.96E-51 | -1.69E-46 |
| MS.gene052616 | MS.gene97784 | 0.801847 | 7.42E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene97784 | 0.822366 | 2.46E-53 | -1.69E-46 |
| MS.gene053079 | MS.gene97784 | 0.864765 | 9.61E-65 | -1.69E-46 |
| MS.gene053144 | MS.gene97784 | 0.806681 | 7.31E-50 | -1.69E-46 |
| MS.gene053166 | MS.gene97784 | 0.822238 | 2.64E-53 | -1.69E-46 |
| MS.gene053188 | MS.gene97784 | 0.807303 | 5.40E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene97784 | 0.800841 | 1.19E-48 | -1.69E-46 |
| MS.gene053542 | MS.gene97784 | 0.804865 | 1.76E-49 | -1.69E-46 |
| MS.gene053565 | MS.gene97784 | 0.823131 | 1.63E-53 | -1.69E-46 |
| MS.gene053575 | MS.gene97784 | 0.831891 | 1.29E-55 | -1.69E-46 |
| MS.gene053599 | MS.gene97784 | 0.801279 | 9.70E-49 | -1.69E-46 |
| MS.gene05364 | MS.gene97784 | 0.842026 | 3.33E-58 | -1.69E-46 |
| MS.gene05415 | MS.gene97784 | 0.81682 | 4.54E-52 | -1.69E-46 |
| MS.gene054576 | MS.gene97784 | 0.808751 | 2.65E-50 | -1.69E-46 |
| MS.gene054584 | MS.gene97784 | 0.802157 | 6.41E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene97784 | 0.849418 | 3.27E-60 | -1.69E-46 |
| MS.gene054709 | MS.gene97784 | 0.841672 | 4.12E-58 | -1.69E-46 |
| MS.gene055227 | MS.gene97784 | 0.804636 | 1.96E-49 | -1.69E-46 |
| MS.gene055228 | MS.gene97784 | 0.808114 | 3.63E-50 | -1.69E-46 |
| MS.gene055464 | MS.gene97784 | 0.843296 | 1.53E-58 | -1.69E-46 |
| MS.gene055465 | MS.gene97784 | 0.800031 | 1.74E-48 | -1.69E-46 |
| MS.gene055469 | MS.gene97784 | 0.802775 | 4.78E-49 | -1.69E-46 |
| MS.gene055512 | MS.gene97784 | 0.810748 | 9.88E-51 | -1.69E-46 |
| MS.gene055724 | MS.gene97784 | 0.801188 | 1.01E-48 | -1.69E-46 |
| MS.gene055890 | MS.gene97784 | 0.825641 | 4.20E-54 | -1.69E-46 |
| MS.gene055891 | MS.gene97784 | 0.82161 | 3.68E-53 | -1.69E-46 |
| MS.gene05604 | MS.gene97784 | 0.809152 | 2.18E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene97784 | 0.813429 | 2.57E-51 | -1.69E-46 |
| MS.gene056308 | MS.gene97784 | 0.845095 | 5.03E-59 | -1.69E-46 |
| MS.gene056366 | MS.gene97784 | 0.837097 | 6.35E-57 | -1.69E-46 |
| MS.gene056507 | MS.gene97784 | 0.856668 | 2.75E-62 | -1.69E-46 |
| MS.gene056699 | MS.gene97784 | 0.822468 | 2.33E-53 | -1.69E-46 |
| MS.gene05686 | MS.gene97784 | 0.838861 | 2.24E-57 | -1.69E-46 |
| MS.gene056973 | MS.gene97784 | 0.807 | 6.26E-50 | -1.69E-46 |
| MS.gene057034 | MS.gene97784 | 0.804206 | 2.41E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene97784 | 0.808613 | 2.84E-50 | -1.69E-46 |
| MS.gene057444 | MS.gene97784 | 0.831095 | 2.03E-55 | -1.69E-46 |
| MS.gene057446 | MS.gene97784 | 0.809584 | 1.76E-50 | -1.69E-46 |
| MS.gene057869 | MS.gene97784 | 0.847434 | 1.16E-59 | -1.69E-46 |
| MS.gene058008 | MS.gene97784 | 0.821304 | 4.33E-53 | -1.69E-46 |
| MS.gene058009 | MS.gene97784 | 0.842757 | 2.13E-58 | -1.69E-46 |
| MS.gene058010 | MS.gene97784 | 0.881937 | 1.58E-70 | -1.69E-46 |
| MS.gene058054 | MS.gene97784 | 0.804691 | 1.91E-49 | -1.69E-46 |
| MS.gene058330 | MS.gene97784 | 0.802101 | 6.58E-49 | -1.69E-46 |
| MS.gene05847 | MS.gene97784 | 0.827979 | 1.16E-54 | -1.69E-46 |
| MS.gene058625 | MS.gene97784 | 0.811734 | 6.04E-51 | -1.69E-46 |
| MS.gene058634 | MS.gene97784 | 0.80494 | 1.70E-49 | -1.69E-46 |
| MS.gene058781 | MS.gene97784 | 0.823288 | 1.50E-53 | -1.69E-46 |
| MS.gene058783 | MS.gene97784 | 0.810032 | 1.41E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene97784 | 0.834417 | 3.03E-56 | -1.69E-46 |
| MS.gene059015 | MS.gene97784 | 0.806733 | 7.13E-50 | -1.69E-46 |
| MS.gene05978 | MS.gene97784 | 0.840584 | 7.96E-58 | -1.69E-46 |
| MS.gene059965 | MS.gene97784 | 0.829186 | 5.93E-55 | -1.69E-46 |
| MS.gene060167 | MS.gene97784 | 0.804134 | 2.50E-49 | -1.69E-46 |
| MS.gene060310 | MS.gene97784 | 0.82168 | 3.55E-53 | -1.69E-46 |
| MS.gene06052 | MS.gene97784 | 0.80418 | 2.45E-49 | -1.69E-46 |
| MS.gene060587 | MS.gene97784 | 0.825423 | 4.73E-54 | -1.69E-46 |
| MS.gene060840 | MS.gene97784 | 0.811066 | 8.43E-51 | -1.69E-46 |
| MS.gene060918 | MS.gene97784 | 0.825849 | 3.75E-54 | -1.69E-46 |
| MS.gene060933 | MS.gene97784 | 0.804308 | 2.30E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene97784 | 0.821856 | 3.23E-53 | -1.69E-46 |
| MS.gene060937 | MS.gene97784 | 0.817347 | 3.46E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene97784 | MS.gene056792 | PPI |
| MS.gene97784 | MS.gene66501 | PPI |
| MS.gene33224 | MS.gene97784 | PPI |
| MS.gene97784 | MS.gene019644 | PPI |
| MS.gene066433 | MS.gene97784 | PPI |
| MS.gene97784 | MS.gene81179 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97784.t1 | MTR_7g405780 | 96.125 | 542 | 14 | 2 | 1 | 537 | 1 | 540 | 0.0 | 1049 |
| MS.gene97784.t1 | MTR_7g405780 | 95.874 | 509 | 14 | 2 | 1 | 504 | 1 | 507 | 0.0 | 983 |
| MS.gene97784.t1 | MTR_7g405780 | 97.664 | 428 | 10 | 0 | 26 | 453 | 29 | 456 | 0.0 | 859 |
| MS.gene97784.t1 | MTR_7g405780 | 97.887 | 426 | 9 | 0 | 26 | 451 | 29 | 454 | 0.0 | 856 |
| MS.gene97784.t1 | MTR_1g116953 | 66.038 | 530 | 166 | 5 | 6 | 533 | 4 | 521 | 0.0 | 710 |
| MS.gene97784.t1 | MTR_8g030680 | 50.200 | 500 | 244 | 3 | 27 | 523 | 25 | 522 | 3.05e-173 | 500 |
| MS.gene97784.t1 | MTR_7g077800 | 50.291 | 515 | 249 | 3 | 11 | 523 | 10 | 519 | 6.80e-173 | 499 |
| MS.gene97784.t1 | MTR_6g463340 | 49.898 | 491 | 244 | 2 | 34 | 523 | 34 | 523 | 1.09e-169 | 491 |
| MS.gene97784.t1 | MTR_8g030680 | 51.716 | 437 | 206 | 3 | 90 | 523 | 2 | 436 | 2.57e-155 | 451 |
| MS.gene97784.t1 | MTR_6g463340 | 51.816 | 413 | 197 | 2 | 112 | 523 | 4 | 415 | 2.42e-146 | 428 |
| MS.gene97784.t1 | MTR_7g077800 | 49.103 | 446 | 220 | 3 | 11 | 454 | 10 | 450 | 1.09e-142 | 419 |
| MS.gene97784.t1 | MTR_7g077800 | 53.665 | 382 | 174 | 2 | 144 | 523 | 1 | 381 | 2.00e-138 | 406 |
| MS.gene97784.t1 | MTR_7g077800 | 43.011 | 372 | 205 | 3 | 11 | 380 | 10 | 376 | 1.39e-93 | 291 |
| MS.gene97784.t1 | MTR_1g100980 | 32.800 | 250 | 121 | 10 | 327 | 537 | 130 | 371 | 1.59e-26 | 111 |
| MS.gene97784.t1 | MTR_3g109932 | 35.176 | 199 | 107 | 9 | 339 | 536 | 154 | 331 | 5.83e-23 | 100 |
| MS.gene97784.t1 | MTR_3g109932 | 35.714 | 182 | 97 | 8 | 339 | 519 | 154 | 316 | 3.40e-21 | 95.1 |
| MS.gene97784.t1 | MTR_1g008280 | 33.171 | 205 | 110 | 10 | 335 | 536 | 151 | 331 | 1.67e-20 | 93.6 |
| MS.gene97784.t1 | MTR_1g008280 | 31.776 | 214 | 110 | 11 | 335 | 536 | 151 | 340 | 6.07e-18 | 85.9 |
| MS.gene97784.t1 | MTR_1g008280 | 35.461 | 141 | 72 | 6 | 339 | 477 | 154 | 277 | 1.77e-13 | 71.6 |
| MS.gene97784.t1 | MTR_3g109968 | 36.029 | 136 | 74 | 7 | 402 | 536 | 1 | 124 | 2.86e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97784.t1 | AT2G43070 | 57.730 | 511 | 214 | 2 | 25 | 534 | 26 | 535 | 0.0 | 605 |
| MS.gene97784.t1 | AT2G43070 | 57.730 | 511 | 214 | 2 | 25 | 534 | 85 | 594 | 0.0 | 605 |
| MS.gene97784.t1 | AT2G43070 | 56.977 | 516 | 216 | 3 | 25 | 534 | 26 | 541 | 0.0 | 602 |
| MS.gene97784.t1 | AT2G43070 | 56.977 | 516 | 216 | 3 | 25 | 534 | 85 | 600 | 0.0 | 601 |
| MS.gene97784.t1 | AT1G05820 | 57.624 | 505 | 208 | 2 | 34 | 537 | 31 | 530 | 0.0 | 600 |
| MS.gene97784.t1 | AT1G05820 | 57.983 | 476 | 199 | 1 | 34 | 508 | 31 | 506 | 0.0 | 573 |
| MS.gene97784.t1 | AT1G05820 | 60.253 | 395 | 151 | 2 | 144 | 537 | 1 | 390 | 2.39e-177 | 505 |
| MS.gene97784.t1 | AT1G01650 | 46.828 | 536 | 277 | 4 | 7 | 535 | 6 | 540 | 7.10e-168 | 486 |
| MS.gene97784.t1 | AT1G63690 | 48.394 | 498 | 254 | 2 | 27 | 523 | 27 | 522 | 8.54e-168 | 486 |
| MS.gene97784.t1 | AT1G63690 | 48.193 | 498 | 255 | 2 | 27 | 523 | 27 | 522 | 5.14e-167 | 484 |
| MS.gene97784.t1 | AT1G05820 | 53.743 | 374 | 172 | 1 | 34 | 406 | 31 | 404 | 2.10e-139 | 409 |
| MS.gene97784.t1 | AT1G01650 | 50.125 | 399 | 191 | 4 | 144 | 535 | 1 | 398 | 7.80e-132 | 389 |
| MS.gene97784.t1 | AT1G01650 | 50.125 | 399 | 191 | 4 | 144 | 535 | 1 | 398 | 7.80e-132 | 389 |
| MS.gene97784.t1 | AT1G01650 | 50.125 | 399 | 191 | 4 | 144 | 535 | 1 | 398 | 7.80e-132 | 389 |
| MS.gene97784.t1 | AT4G33410 | 31.687 | 243 | 118 | 8 | 332 | 536 | 136 | 368 | 2.30e-24 | 105 |
| MS.gene97784.t1 | AT2G03120 | 33.168 | 202 | 108 | 8 | 335 | 536 | 151 | 325 | 1.61e-22 | 99.4 |
Find 102 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATTACAAGCCTTACTTTA+AGG | 0.126313 | 7.3:+82072683 | MS.gene97784:CDS |
| CCATTCAGATACCTTAATAT+TGG | 0.231560 | 7.3:-82073808 | None:intergenic |
| ACCGTGAATGTACCTCTATT+TGG | 0.270390 | 7.3:+82072845 | MS.gene97784:CDS |
| GGCTCAATTACCCAATATTA+AGG | 0.281634 | 7.3:+82073797 | MS.gene97784:CDS |
| AATAAGAAGGGAGTATTAAA+TGG | 0.282651 | 7.3:+82075988 | MS.gene97784:CDS |
| GAAGGGGTTATTGCAGGATT+TGG | 0.304237 | 7.3:-82069310 | None:intergenic |
| CCGTGAATGTACCTCTATTT+GGG | 0.311643 | 7.3:+82072846 | MS.gene97784:CDS |
| TGCTTGTTTCCTTTGCTCAT+AGG | 0.314787 | 7.3:+82075255 | MS.gene97784:CDS |
| AACAGGTGTCTTTATCATAC+TGG | 0.323193 | 7.3:+82077908 | MS.gene97784:intron |
| CATTCAGATACCTTAATATT+GGG | 0.336485 | 7.3:-82073807 | None:intergenic |
| TGTTCTTCTTCATGTCATCT+TGG | 0.341498 | 7.3:+82072309 | MS.gene97784:CDS |
| TTTGGAGATATCATCTTTCC+TGG | 0.348248 | 7.3:+82075230 | MS.gene97784:CDS |
| CAATTGGAAGGGGTTATTGC+AGG | 0.365992 | 7.3:-82069316 | None:intergenic |
| CTGAAGAGCCTTTGGAACTA+TGG | 0.375606 | 7.3:+82077948 | MS.gene97784:CDS |
| AGCGGTATGACTGCAAGATT+TGG | 0.390051 | 7.3:+82069457 | MS.gene97784:CDS |
| CTCAATGCATCTTTAACATC+TGG | 0.391847 | 7.3:+82070585 | MS.gene97784:CDS |
| GGTTATGACATGATTGGCTT+TGG | 0.398137 | 7.3:+82075212 | MS.gene97784:CDS |
| AGCAGGAAATGGCATAATAT+TGG | 0.401964 | 7.3:+82072815 | MS.gene97784:intron |
| CTTTGGTTGGTAATTGGCTA+TGG | 0.404300 | 7.3:+82076018 | MS.gene97784:CDS |
| CTATATCTGATGGACGGAAA+TGG | 0.410311 | 7.3:+82077753 | MS.gene97784:CDS |
| TTGGTAATTGGCTATGGAAT+TGG | 0.414421 | 7.3:+82076024 | MS.gene97784:CDS |
| TTATTGCAGGATTTGGACTT+GGG | 0.431374 | 7.3:-82069303 | None:intergenic |
| AAAGCTACCATTGCACAATC+TGG | 0.431460 | 7.3:+82069988 | MS.gene97784:CDS |
| CTGTTCATCTTCAACTTCAA+AGG | 0.431581 | 7.3:+82069549 | MS.gene97784:CDS |
| GAGGTGAGCTGAAGAGCCTT+TGG | 0.433531 | 7.3:+82077940 | MS.gene97784:CDS |
| TCATGTCATCTTGGTTTATG+TGG | 0.433677 | 7.3:+82072318 | MS.gene97784:CDS |
| CTGCAATCATGACACTTTCG+TGG | 0.440698 | 7.3:-82074008 | None:intergenic |
| GCACAATCTGGAGGTGCTAC+TGG | 0.444792 | 7.3:+82070000 | MS.gene97784:CDS |
| ATCGCGTTTCACATCGTTTG+AGG | 0.445256 | 7.3:-82069268 | None:intergenic |
| CTTGTCAGATCTTGTTGAGA+TGG | 0.448507 | 7.3:+82070491 | MS.gene97784:intron |
| GTTATTGCAGGATTTGGACT+TGG | 0.449116 | 7.3:-82069304 | None:intergenic |
| CATGAATCTTATTCGTGGAT+TGG | 0.453557 | 7.3:+82072941 | MS.gene97784:CDS |
| GATTGGTGTACCTTAAAGTA+AGG | 0.461098 | 7.3:-82072693 | None:intergenic |
| CTCGACATGAATCTTATTCG+TGG | 0.464019 | 7.3:+82072936 | MS.gene97784:CDS |
| GTAGGATTAGAGAAAAGAAC+AGG | 0.464111 | 7.3:-82069520 | None:intergenic |
| CTGCAATAACCCCTTCCAAT+TGG | 0.473899 | 7.3:+82069317 | MS.gene97784:CDS |
| TAGCGTTCACCAGACTTCTC+TGG | 0.475884 | 7.3:-82071772 | None:intergenic |
| CAATTGTGTGTGCTTCACTA+TGG | 0.479326 | 7.3:+82071734 | MS.gene97784:CDS |
| CTTATTCTGTGTGGCATTTG+CGG | 0.479391 | 7.3:+82072898 | MS.gene97784:CDS |
| CTAACTACTCCAGAGAAGTC+TGG | 0.484549 | 7.3:+82071763 | MS.gene97784:CDS |
| TTTGACAAAGATAATAAGAA+GGG | 0.487887 | 7.3:+82075976 | MS.gene97784:CDS |
| CTGTTGCACTATGTATTCGT+GGG | 0.490034 | 7.3:+82069947 | MS.gene97784:CDS |
| AAGGCTCTGTGGACAAGGAC+GGG | 0.495704 | 7.3:-82077977 | None:intergenic |
| TTTCTGCATCGCTGGTATTG+AGG | 0.498054 | 7.3:+82072355 | MS.gene97784:CDS |
| AGTTCTTAACATTAATTCAA+AGG | 0.500692 | 7.3:+82072241 | MS.gene97784:CDS |
| AACTAATTACCTAGTGTACA+TGG | 0.508747 | 7.3:-82077801 | None:intergenic |
| ATAGAAATCTCCCCAAATAG+AGG | 0.515017 | 7.3:-82072857 | None:intergenic |
| GCAAAGGAAACAAGCAAACC+AGG | 0.520443 | 7.3:-82075248 | None:intergenic |
| ATCTGAAGGCTCTGTGGACA+AGG | 0.520593 | 7.3:-82077982 | None:intergenic |
| TCTGTTGCACTATGTATTCG+TGG | 0.520835 | 7.3:+82069946 | MS.gene97784:CDS |
| GAAGAACAACAGAACAAGAA+AGG | 0.523771 | 7.3:-82072294 | None:intergenic |
| CCCAAATAGAGGTACATTCA+CGG | 0.524619 | 7.3:-82072846 | None:intergenic |
| CAAAATGTTGCCGCAGCAAG+AGG | 0.530332 | 7.3:+82072203 | MS.gene97784:CDS |
| TGGGGTGGTTATGACATGAT+TGG | 0.531000 | 7.3:+82075206 | MS.gene97784:CDS |
| AACATAGATACCAATTGGAA+GGG | 0.538212 | 7.3:-82069327 | None:intergenic |
| TTGATCATAAATAATGAAGA+GGG | 0.540583 | 7.3:+82070027 | MS.gene97784:CDS |
| ATTTGACAAAGATAATAAGA+AGG | 0.542281 | 7.3:+82075975 | MS.gene97784:CDS |
| GAAGGCTCTGTGGACAAGGA+CGG | 0.551683 | 7.3:-82077978 | None:intergenic |
| TAACATAGATACCAATTGGA+AGG | 0.553951 | 7.3:-82069328 | None:intergenic |
| GTGTACATGGAACAAGGTAA+AGG | 0.560022 | 7.3:-82077788 | None:intergenic |
| CGAGGAAATCTCAAAAGCAT+AGG | 0.561111 | 7.3:-82075170 | None:intergenic |
| GTGATGATAACAAAATCAGC+AGG | 0.562351 | 7.3:+82070555 | MS.gene97784:CDS |
| GATGATAACAGTCTTGCAGT+TGG | 0.562665 | 7.3:+82073776 | MS.gene97784:CDS |
| CGTAGGCAAAGGCACAAGAA+AGG | 0.563267 | 7.3:-82073951 | None:intergenic |
| AACTGGGCAGATGGTGAGGA+AGG | 0.563889 | 7.3:+82069424 | MS.gene97784:CDS |
| GGAACAAGGTAAAGGAGTGC+AGG | 0.565273 | 7.3:-82077780 | None:intergenic |
| TGAAACTTACAAGAGTGTCT+TGG | 0.566650 | 7.3:-82072964 | None:intergenic |
| TACCTTGTTCCATGTACACT+AGG | 0.572010 | 7.3:+82077792 | MS.gene97784:CDS |
| GTTGCTCGAGGTGACAAGGC+TGG | 0.572106 | 7.3:+82075134 | MS.gene97784:CDS |
| TTTGATCATAAATAATGAAG+AGG | 0.572536 | 7.3:+82070026 | MS.gene97784:CDS |
| ACAGGTGTCTTTATCATACT+GGG | 0.577795 | 7.3:+82077909 | MS.gene97784:intron |
| GAAGATGAACAGCAGTCAGT+AGG | 0.579933 | 7.3:-82069538 | None:intergenic |
| ACAGGTTGCTCGAGGTGACA+AGG | 0.580045 | 7.3:+82075130 | MS.gene97784:intron |
| TGTTGCACTATGTATTCGTG+GGG | 0.587147 | 7.3:+82069948 | MS.gene97784:CDS |
| ACTTAAACTTCTGAATCTGA+AGG | 0.591672 | 7.3:-82077996 | None:intergenic |
| GAGAAGTCTACAAGTGGTCG+AGG | 0.593645 | 7.3:-82071679 | None:intergenic |
| ATATTTGGGACTATATCTGA+TGG | 0.596954 | 7.3:+82077743 | MS.gene97784:CDS |
| TTCTGAATCTGAAGGCTCTG+TGG | 0.600028 | 7.3:-82077988 | None:intergenic |
| CTATAGTGAATTATATCCCA+AGG | 0.613141 | 7.3:+82071792 | MS.gene97784:CDS |
| ATCAGAACTGCCTCTTGCTG+CGG | 0.613780 | 7.3:-82072213 | None:intergenic |
| TCTTTAACATCTGGAAGGAG+AGG | 0.617879 | 7.3:+82070594 | MS.gene97784:CDS |
| GGCAGTGTTCTTATTCTGTG+TGG | 0.621833 | 7.3:+82072889 | MS.gene97784:CDS |
| ATGCATCTTTAACATCTGGA+AGG | 0.622526 | 7.3:+82070589 | MS.gene97784:CDS |
| AATTCAGTACCTATGAGCAA+AGG | 0.623886 | 7.3:-82075264 | None:intergenic |
| TGGAATTGTGATGTTTGCCT+CGG | 0.628100 | 7.3:-82070529 | None:intergenic |
| ACATAGATACCAATTGGAAG+GGG | 0.630946 | 7.3:-82069326 | None:intergenic |
| GGTCTGTGCCATAGTTCCAA+AGG | 0.631166 | 7.3:-82077956 | None:intergenic |
| ATCATACTGGGATGTGTGAG+AGG | 0.640789 | 7.3:+82077921 | MS.gene97784:CDS |
| TACCTAGTGTACATGGAACA+AGG | 0.648646 | 7.3:-82077794 | None:intergenic |
| GCAACTGAGAAGTCTACAAG+TGG | 0.652290 | 7.3:-82071685 | None:intergenic |
| AAGTCTACAAGTGGTCGAGG+TGG | 0.653317 | 7.3:-82071676 | None:intergenic |
| TTGGGACTATATCTGATGGA+CGG | 0.656493 | 7.3:+82077747 | MS.gene97784:CDS |
| AGCACCTCCAGATTGTGCAA+TGG | 0.659277 | 7.3:-82069995 | None:intergenic |
| GCTACCATTGCACAATCTGG+AGG | 0.659494 | 7.3:+82069991 | MS.gene97784:CDS |
| CGTGAATGTACCTCTATTTG+GGG | 0.661213 | 7.3:+82072847 | MS.gene97784:CDS |
| GCTCGAGGTGACAAGGCTGG+TGG | 0.663108 | 7.3:+82075137 | MS.gene97784:CDS |
| GTCCCAAATATGTGAAAACG+AGG | 0.667691 | 7.3:-82077731 | None:intergenic |
| TGCTGATATGACAAATACAA+CGG | 0.681417 | 7.3:-82072267 | None:intergenic |
| ACACTTTCGTGGAATATCAG+CGG | 0.689571 | 7.3:-82073997 | None:intergenic |
| GTTGCACTATGTATTCGTGG+GGG | 0.728676 | 7.3:+82069949 | MS.gene97784:CDS |
| GAGGAAGGTGTTATTCAAAG+CGG | 0.739490 | 7.3:+82069439 | MS.gene97784:CDS |
| GGTTTGCACTGATAGTACCG+AGG | 0.757624 | 7.3:+82070512 | MS.gene97784:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 82069192 | 82078016 | 82069192 | ID=MS.gene97784 |
| chr7.3 | mRNA | 82069192 | 82078016 | 82069192 | ID=MS.gene97784.t1;Parent=MS.gene97784 |
| chr7.3 | exon | 82069192 | 82069338 | 82069192 | ID=MS.gene97784.t1.exon1;Parent=MS.gene97784.t1 |
| chr7.3 | CDS | 82069192 | 82069338 | 82069192 | ID=cds.MS.gene97784.t1;Parent=MS.gene97784.t1 |
| chr7.3 | exon | 82069412 | 82069570 | 82069412 | ID=MS.gene97784.t1.exon2;Parent=MS.gene97784.t1 |
| chr7.3 | CDS | 82069412 | 82069570 | 82069412 | ID=cds.MS.gene97784.t1;Parent=MS.gene97784.t1 |
| chr7.3 | exon | 82069937 | 82070048 | 82069937 | ID=MS.gene97784.t1.exon3;Parent=MS.gene97784.t1 |
| chr7.3 | CDS | 82069937 | 82070048 | 82069937 | ID=cds.MS.gene97784.t1;Parent=MS.gene97784.t1 |
| chr7.3 | exon | 82070499 | 82070615 | 82070499 | ID=MS.gene97784.t1.exon4;Parent=MS.gene97784.t1 |
| chr7.3 | CDS | 82070499 | 82070615 | 82070499 | ID=cds.MS.gene97784.t1;Parent=MS.gene97784.t1 |
| chr7.3 | exon | 82071656 | 82071813 | 82071656 | ID=MS.gene97784.t1.exon5;Parent=MS.gene97784.t1 |
| chr7.3 | CDS | 82071656 | 82071813 | 82071656 | ID=cds.MS.gene97784.t1;Parent=MS.gene97784.t1 |
| chr7.3 | exon | 82072197 | 82072376 | 82072197 | ID=MS.gene97784.t1.exon6;Parent=MS.gene97784.t1 |
| chr7.3 | CDS | 82072197 | 82072376 | 82072197 | ID=cds.MS.gene97784.t1;Parent=MS.gene97784.t1 |
| chr7.3 | exon | 82072670 | 82072704 | 82072670 | ID=MS.gene97784.t1.exon7;Parent=MS.gene97784.t1 |
| chr7.3 | CDS | 82072670 | 82072704 | 82072670 | ID=cds.MS.gene97784.t1;Parent=MS.gene97784.t1 |
| chr7.3 | exon | 82072820 | 82072976 | 82072820 | ID=MS.gene97784.t1.exon8;Parent=MS.gene97784.t1 |
| chr7.3 | CDS | 82072820 | 82072976 | 82072820 | ID=cds.MS.gene97784.t1;Parent=MS.gene97784.t1 |
| chr7.3 | exon | 82073765 | 82073818 | 82073765 | ID=MS.gene97784.t1.exon9;Parent=MS.gene97784.t1 |
| chr7.3 | CDS | 82073765 | 82073818 | 82073765 | ID=cds.MS.gene97784.t1;Parent=MS.gene97784.t1 |
| chr7.3 | exon | 82073937 | 82074029 | 82073937 | ID=MS.gene97784.t1.exon10;Parent=MS.gene97784.t1 |
| chr7.3 | CDS | 82073937 | 82074029 | 82073937 | ID=cds.MS.gene97784.t1;Parent=MS.gene97784.t1 |
| chr7.3 | exon | 82075134 | 82075276 | 82075134 | ID=MS.gene97784.t1.exon11;Parent=MS.gene97784.t1 |
| chr7.3 | CDS | 82075134 | 82075276 | 82075134 | ID=cds.MS.gene97784.t1;Parent=MS.gene97784.t1 |
| chr7.3 | exon | 82075975 | 82076045 | 82075975 | ID=MS.gene97784.t1.exon12;Parent=MS.gene97784.t1 |
| chr7.3 | CDS | 82075975 | 82076045 | 82075975 | ID=cds.MS.gene97784.t1;Parent=MS.gene97784.t1 |
| chr7.3 | exon | 82077730 | 82077813 | 82077730 | ID=MS.gene97784.t1.exon13;Parent=MS.gene97784.t1 |
| chr7.3 | CDS | 82077730 | 82077813 | 82077730 | ID=cds.MS.gene97784.t1;Parent=MS.gene97784.t1 |
| chr7.3 | exon | 82077913 | 82078016 | 82077913 | ID=MS.gene97784.t1.exon14;Parent=MS.gene97784.t1 |
| chr7.3 | CDS | 82077913 | 82078016 | 82077913 | ID=cds.MS.gene97784.t1;Parent=MS.gene97784.t1 |
| Gene Sequence |
| Protein sequence |
